Multiple sequence alignment - TraesCS1D01G443100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G443100 chr1D 100.000 5314 0 0 484 5797 487176310 487170997 0.000000e+00 9814.0
1 TraesCS1D01G443100 chr1D 100.000 258 0 0 1 258 487176793 487176536 1.460000e-130 477.0
2 TraesCS1D01G443100 chr1D 98.876 89 0 1 3241 3329 487173469 487173382 2.160000e-34 158.0
3 TraesCS1D01G443100 chr1D 98.876 89 0 1 3325 3412 487173553 487173465 2.160000e-34 158.0
4 TraesCS1D01G443100 chr1D 90.123 81 6 2 5716 5795 463589442 463589521 2.860000e-18 104.0
5 TraesCS1D01G443100 chr1D 87.500 80 4 6 5719 5792 463343606 463343527 2.880000e-13 87.9
6 TraesCS1D01G443100 chr1A 93.309 2735 117 20 630 3332 584683813 584681113 0.000000e+00 3976.0
7 TraesCS1D01G443100 chr1A 93.833 1508 54 11 4304 5783 584680313 584678817 0.000000e+00 2233.0
8 TraesCS1D01G443100 chr1A 94.737 513 24 3 3325 3834 584681204 584680692 0.000000e+00 795.0
9 TraesCS1D01G443100 chr1A 84.282 439 55 8 484 909 584684137 584683700 3.230000e-112 416.0
10 TraesCS1D01G443100 chr1A 87.931 290 24 4 631 909 584683932 584683643 1.200000e-86 331.0
11 TraesCS1D01G443100 chr1A 97.222 180 5 0 1 180 584684486 584684307 7.300000e-79 305.0
12 TraesCS1D01G443100 chr1A 90.583 223 17 3 3829 4048 584680660 584680439 5.680000e-75 292.0
13 TraesCS1D01G443100 chr1A 90.968 155 11 3 4023 4175 516009577 516009730 7.610000e-49 206.0
14 TraesCS1D01G443100 chr1A 79.167 192 28 6 5333 5516 521251730 521251543 7.890000e-24 122.0
15 TraesCS1D01G443100 chr1B 94.644 1475 63 7 631 2092 678267520 678266049 0.000000e+00 2272.0
16 TraesCS1D01G443100 chr1B 86.924 1583 87 61 4210 5715 678263451 678261912 0.000000e+00 1666.0
17 TraesCS1D01G443100 chr1B 89.428 1277 72 28 2089 3329 678265620 678264371 0.000000e+00 1552.0
18 TraesCS1D01G443100 chr1B 95.136 514 22 3 3324 3834 678264460 678263947 0.000000e+00 808.0
19 TraesCS1D01G443100 chr1B 86.681 473 50 5 3333 3804 678055281 678055741 4.010000e-141 512.0
20 TraesCS1D01G443100 chr1B 91.866 209 16 1 3836 4044 678263904 678263697 2.040000e-74 291.0
21 TraesCS1D01G443100 chr1B 86.245 269 15 8 1 258 678268076 678267819 7.400000e-69 272.0
22 TraesCS1D01G443100 chr1B 85.944 249 31 3 4320 4566 678064296 678064542 4.450000e-66 263.0
23 TraesCS1D01G443100 chr1B 85.772 246 30 3 630 871 678267579 678267335 7.450000e-64 255.0
24 TraesCS1D01G443100 chr1B 81.447 318 40 10 1583 1883 678054851 678055166 5.800000e-60 243.0
25 TraesCS1D01G443100 chr1B 95.652 138 4 2 4036 4173 623731977 623732112 2.720000e-53 220.0
26 TraesCS1D01G443100 chr2D 94.040 151 4 4 4049 4195 536091150 536091001 2.100000e-54 224.0
27 TraesCS1D01G443100 chr3D 96.269 134 5 0 4039 4172 210622416 210622549 2.720000e-53 220.0
28 TraesCS1D01G443100 chr3D 96.269 134 4 1 4043 4175 496172753 496172886 9.780000e-53 219.0
29 TraesCS1D01G443100 chr3D 93.662 142 8 1 4031 4172 351086611 351086751 1.640000e-50 211.0
30 TraesCS1D01G443100 chr3A 95.556 135 6 0 4043 4177 642715813 642715947 3.520000e-52 217.0
31 TraesCS1D01G443100 chr3A 92.414 145 10 1 4032 4175 580812826 580812682 7.610000e-49 206.0
32 TraesCS1D01G443100 chr3A 95.312 64 2 1 5715 5778 510852208 510852270 3.700000e-17 100.0
33 TraesCS1D01G443100 chr3B 93.103 145 9 1 4032 4175 60398901 60398757 1.640000e-50 211.0
34 TraesCS1D01G443100 chr4B 81.159 207 35 4 5292 5495 148951058 148950853 4.650000e-36 163.0
35 TraesCS1D01G443100 chr6D 80.676 207 28 7 5292 5489 4546995 4547198 3.620000e-32 150.0
36 TraesCS1D01G443100 chr6D 89.333 75 7 1 5718 5792 290903885 290903812 6.190000e-15 93.5
37 TraesCS1D01G443100 chr4D 80.000 200 35 4 5292 5487 105146873 105146675 6.060000e-30 143.0
38 TraesCS1D01G443100 chr6A 78.151 238 36 12 5292 5516 2938894 2939128 2.820000e-28 137.0
39 TraesCS1D01G443100 chr6A 79.817 109 16 6 5308 5412 617067794 617067688 2.240000e-09 75.0
40 TraesCS1D01G443100 chr4A 79.897 194 33 5 5309 5497 470676821 470677013 2.820000e-28 137.0
41 TraesCS1D01G443100 chr2A 88.372 86 4 5 5716 5795 31181429 31181514 1.330000e-16 99.0
42 TraesCS1D01G443100 chr2B 87.209 86 5 6 5716 5795 47421153 47421068 6.190000e-15 93.5
43 TraesCS1D01G443100 chr2B 88.312 77 8 1 5715 5790 663047944 663048020 2.220000e-14 91.6
44 TraesCS1D01G443100 chr7B 87.179 78 7 2 5716 5793 656425035 656425109 1.030000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G443100 chr1D 487170997 487176793 5796 True 2651.750000 9814 99.438000 1 5797 4 chr1D.!!$R2 5796
1 TraesCS1D01G443100 chr1A 584678817 584684486 5669 True 1192.571429 3976 91.699571 1 5783 7 chr1A.!!$R2 5782
2 TraesCS1D01G443100 chr1B 678261912 678268076 6164 True 1016.571429 2272 90.002143 1 5715 7 chr1B.!!$R1 5714
3 TraesCS1D01G443100 chr1B 678054851 678055741 890 False 377.500000 512 84.064000 1583 3804 2 chr1B.!!$F3 2221

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 139 0.036875 CCACTCCCCAGGTTCTTGAC 59.963 60.000 0.00 0.0 0.00 3.18 F
1230 1502 1.284657 CAGTAGATGAAGTGCGCCAG 58.715 55.000 4.18 0.0 0.00 4.85 F
1347 1619 0.033504 TGGTCAGGACAAAGTCGAGC 59.966 55.000 1.41 0.0 32.65 5.03 F
1491 1763 0.250234 CCGCATCTCCTCTTGTTGGA 59.750 55.000 0.00 0.0 0.00 3.53 F
1497 1769 0.615850 CTCCTCTTGTTGGACTCCCC 59.384 60.000 0.00 0.0 0.00 4.81 F
2460 3229 1.628846 AGCATTTCCTCCACGGTACTT 59.371 47.619 0.00 0.0 0.00 2.24 F
2765 3543 1.911057 AGCTAAGTTGGTGGAAAGGC 58.089 50.000 0.00 0.0 0.00 4.35 F
4208 5127 0.107361 TGCATGCTCAGGAGTCCATG 60.107 55.000 20.33 7.0 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1272 1544 0.868406 GTTTCTCCTGCACCGTCAAG 59.132 55.000 0.00 0.0 0.00 3.02 R
2460 3229 1.394618 GTACCACAGTTTGCCAACCA 58.605 50.000 0.00 0.0 32.70 3.67 R
3135 3930 1.764134 ACACTGTTCCCGTAGAAACCA 59.236 47.619 0.00 0.0 35.85 3.67 R
3297 4093 2.363306 ACACAAGCATCCTGGAACAA 57.637 45.000 0.00 0.0 38.70 2.83 R
3324 4120 2.833943 AGTCACAGACCATATGCTCACA 59.166 45.455 0.00 0.0 32.18 3.58 R
3890 4729 0.261696 GGGGGCCACATACCTGAAAT 59.738 55.000 7.65 0.0 0.00 2.17 R
4664 5595 0.406750 TCCTCCGGTCCTTCAGTACA 59.593 55.000 0.00 0.0 0.00 2.90 R
5112 6076 2.859165 AAATGAAGCGAGGAAGGACA 57.141 45.000 0.00 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 0.568888 TATGCGCGATTCGTTTCGTC 59.431 50.000 12.10 1.09 41.16 4.20
99 100 1.439679 GATTCGTTTCGTCCTTGCCT 58.560 50.000 0.00 0.00 0.00 4.75
138 139 0.036875 CCACTCCCCAGGTTCTTGAC 59.963 60.000 0.00 0.00 0.00 3.18
180 181 2.808543 CCAGGAGTTCACAGTTAGTTGC 59.191 50.000 0.00 0.00 0.00 4.17
182 183 3.496130 CAGGAGTTCACAGTTAGTTGCAG 59.504 47.826 0.00 0.00 0.00 4.41
183 184 3.134804 AGGAGTTCACAGTTAGTTGCAGT 59.865 43.478 0.00 0.00 0.00 4.40
184 185 3.495001 GGAGTTCACAGTTAGTTGCAGTC 59.505 47.826 0.00 0.00 0.00 3.51
185 186 4.119862 GAGTTCACAGTTAGTTGCAGTCA 58.880 43.478 0.00 0.00 0.00 3.41
186 187 4.513442 AGTTCACAGTTAGTTGCAGTCAA 58.487 39.130 0.00 0.00 0.00 3.18
189 190 4.450976 TCACAGTTAGTTGCAGTCAATGT 58.549 39.130 0.00 0.00 34.29 2.71
190 191 4.273235 TCACAGTTAGTTGCAGTCAATGTG 59.727 41.667 11.52 11.52 38.53 3.21
191 192 4.035558 CACAGTTAGTTGCAGTCAATGTGT 59.964 41.667 10.21 0.00 35.28 3.72
194 195 4.881273 AGTTAGTTGCAGTCAATGTGTTGA 59.119 37.500 0.00 0.00 41.89 3.18
204 205 3.479489 TCAATGTGTTGACTGATGCTGT 58.521 40.909 0.00 0.00 39.36 4.40
205 206 3.251487 TCAATGTGTTGACTGATGCTGTG 59.749 43.478 0.00 0.00 39.36 3.66
206 207 2.330440 TGTGTTGACTGATGCTGTGT 57.670 45.000 0.00 0.00 0.00 3.72
247 265 4.514441 GGAGCAGACGATTCATCATCAATT 59.486 41.667 0.00 0.00 0.00 2.32
525 543 3.189287 GCCATAAACTTCAGTGGACACAG 59.811 47.826 5.14 0.00 33.53 3.66
579 600 8.722480 TTATGTTGTCCTCATTCAGATAAGTG 57.278 34.615 0.00 0.00 0.00 3.16
623 644 3.368739 CCTTTTCATCCCAACTCCAATGC 60.369 47.826 0.00 0.00 0.00 3.56
735 995 7.065803 TCCTTTTGTCTTTCTTACTGTGTTCAG 59.934 37.037 0.00 0.00 46.18 3.02
748 1008 3.138304 TGTGTTCAGTGAAGTGTATGCC 58.862 45.455 5.62 0.00 0.00 4.40
756 1016 4.005650 AGTGAAGTGTATGCCATGTTCTG 58.994 43.478 0.00 0.00 0.00 3.02
1191 1463 3.580458 AGATCCCAGTATCTCAAATCCCG 59.420 47.826 0.00 0.00 30.09 5.14
1215 1487 6.291377 GGATGTATCAAAGGAGATTGCAGTA 58.709 40.000 0.00 0.00 0.00 2.74
1230 1502 1.284657 CAGTAGATGAAGTGCGCCAG 58.715 55.000 4.18 0.00 0.00 4.85
1251 1523 4.155462 CAGCATGCTGTTGTTGAGAACTAT 59.845 41.667 34.76 0.00 39.10 2.12
1256 1528 4.214119 TGCTGTTGTTGAGAACTATCAAGC 59.786 41.667 0.00 0.00 39.78 4.01
1257 1529 4.453819 GCTGTTGTTGAGAACTATCAAGCT 59.546 41.667 0.00 0.00 39.78 3.74
1272 1544 1.000938 CAAGCTCAAGAAAGCCACACC 60.001 52.381 0.00 0.00 43.56 4.16
1347 1619 0.033504 TGGTCAGGACAAAGTCGAGC 59.966 55.000 1.41 0.00 32.65 5.03
1353 1625 1.696832 GGACAAAGTCGAGCGATGCC 61.697 60.000 0.00 0.00 32.65 4.40
1410 1682 2.563179 CGATAGGGCTGGTAGTGCTTAT 59.437 50.000 0.00 0.00 0.00 1.73
1491 1763 0.250234 CCGCATCTCCTCTTGTTGGA 59.750 55.000 0.00 0.00 0.00 3.53
1497 1769 0.615850 CTCCTCTTGTTGGACTCCCC 59.384 60.000 0.00 0.00 0.00 4.81
1755 2044 6.293004 TGTGATGTCACCATACTGATTGTA 57.707 37.500 10.40 0.00 45.88 2.41
1895 2184 4.811969 TCCACAGGTTAGCTATTTTCGA 57.188 40.909 0.00 0.00 0.00 3.71
1966 2255 7.537715 TGTTTACATCAAATGGCTACTGATTG 58.462 34.615 0.00 0.00 33.60 2.67
2027 2316 9.696917 AATTCTTCACCACAAAATATGACTTTC 57.303 29.630 0.00 0.00 0.00 2.62
2068 2357 5.828299 TTTTTCTTCGTGGAACTGTCAAT 57.172 34.783 0.00 0.00 31.75 2.57
2215 2946 6.939132 TGTTGTAAAACCTTTTCCATCGTA 57.061 33.333 0.00 0.00 0.00 3.43
2222 2953 6.555812 AAACCTTTTCCATCGTAGAACTTC 57.444 37.500 0.00 0.00 43.58 3.01
2240 2971 3.054361 ACTTCGGGGAATATTGTGCTCTT 60.054 43.478 0.00 0.00 0.00 2.85
2241 2972 2.917933 TCGGGGAATATTGTGCTCTTG 58.082 47.619 0.00 0.00 0.00 3.02
2274 3043 3.648067 TGATAAGAAGGGCCCTGTCATAG 59.352 47.826 29.50 0.00 0.00 2.23
2295 3064 9.073475 TCATAGCTTTACAAGTGTTTAAATGGT 57.927 29.630 0.00 0.00 0.00 3.55
2313 3082 5.587388 ATGGTCCAAGCATATCAAAACTG 57.413 39.130 0.00 0.00 34.09 3.16
2420 3189 2.697751 CTGCTCTCTGTAATAGGCCTGT 59.302 50.000 17.99 5.57 0.00 4.00
2422 3191 4.483950 TGCTCTCTGTAATAGGCCTGTAT 58.516 43.478 17.99 0.00 0.00 2.29
2454 3223 3.012518 AGAATCAAGCATTTCCTCCACG 58.987 45.455 0.00 0.00 0.00 4.94
2460 3229 1.628846 AGCATTTCCTCCACGGTACTT 59.371 47.619 0.00 0.00 0.00 2.24
2666 3441 8.578308 TGTCTTCTTCAAGCATGTTAAATTTG 57.422 30.769 0.00 0.00 0.00 2.32
2688 3463 4.570369 TGATCAGCCAATACAATGTACACG 59.430 41.667 0.00 0.00 0.00 4.49
2694 3469 5.701750 AGCCAATACAATGTACACGTGTTAA 59.298 36.000 28.55 15.87 0.00 2.01
2765 3543 1.911057 AGCTAAGTTGGTGGAAAGGC 58.089 50.000 0.00 0.00 0.00 4.35
2812 3590 5.588648 CAGGTTTTGGTTCTCTACAACTTGA 59.411 40.000 0.00 0.00 0.00 3.02
2870 3649 7.879070 TGTACTTCGTATTAGGTATCCATCAC 58.121 38.462 0.00 0.00 0.00 3.06
2879 3658 7.698163 ATTAGGTATCCATCACTTTCTTCCT 57.302 36.000 0.00 0.00 0.00 3.36
2909 3688 3.892284 TGGCTACAGAAACAGGAAAACA 58.108 40.909 0.00 0.00 0.00 2.83
2911 3690 4.892934 TGGCTACAGAAACAGGAAAACAAT 59.107 37.500 0.00 0.00 0.00 2.71
2912 3691 5.009610 TGGCTACAGAAACAGGAAAACAATC 59.990 40.000 0.00 0.00 0.00 2.67
2913 3692 5.009610 GGCTACAGAAACAGGAAAACAATCA 59.990 40.000 0.00 0.00 0.00 2.57
2914 3693 6.294731 GGCTACAGAAACAGGAAAACAATCAT 60.295 38.462 0.00 0.00 0.00 2.45
2915 3694 7.147976 GCTACAGAAACAGGAAAACAATCATT 58.852 34.615 0.00 0.00 0.00 2.57
2916 3695 7.653311 GCTACAGAAACAGGAAAACAATCATTT 59.347 33.333 0.00 0.00 0.00 2.32
2990 3772 4.343239 ACATATTTACGGTAGGGGTCTGAC 59.657 45.833 0.00 0.00 0.00 3.51
3009 3797 6.742718 GTCTGACAATTGTTTCGTATCATTGG 59.257 38.462 13.36 0.00 0.00 3.16
3135 3930 5.483685 TCTGTAGGACATAAGCAGTTTGT 57.516 39.130 0.00 0.00 0.00 2.83
3146 3941 2.218603 AGCAGTTTGTGGTTTCTACGG 58.781 47.619 0.00 0.00 30.62 4.02
3232 4027 6.465781 GTGAATGTACATTGTGCAAATCTACG 59.534 38.462 25.42 0.00 31.17 3.51
3293 4089 8.167392 TCATCTTCCATCCCTTTGTTAAACTTA 58.833 33.333 0.00 0.00 0.00 2.24
3294 4090 8.971073 CATCTTCCATCCCTTTGTTAAACTTAT 58.029 33.333 0.00 0.00 0.00 1.73
3295 4091 8.950007 TCTTCCATCCCTTTGTTAAACTTATT 57.050 30.769 0.00 0.00 0.00 1.40
3296 4092 9.374711 TCTTCCATCCCTTTGTTAAACTTATTT 57.625 29.630 0.00 0.00 0.00 1.40
3297 4093 9.996554 CTTCCATCCCTTTGTTAAACTTATTTT 57.003 29.630 0.00 0.00 0.00 1.82
3299 4095 9.771534 TCCATCCCTTTGTTAAACTTATTTTTG 57.228 29.630 0.00 0.00 0.00 2.44
3300 4096 9.554395 CCATCCCTTTGTTAAACTTATTTTTGT 57.446 29.630 0.00 0.00 0.00 2.83
3303 4099 9.602568 TCCCTTTGTTAAACTTATTTTTGTTCC 57.397 29.630 0.00 0.00 0.00 3.62
3304 4100 9.384764 CCCTTTGTTAAACTTATTTTTGTTCCA 57.615 29.630 0.00 0.00 0.00 3.53
3309 4105 9.757227 TGTTAAACTTATTTTTGTTCCAGGATG 57.243 29.630 0.00 0.00 0.00 3.51
3310 4106 8.708742 GTTAAACTTATTTTTGTTCCAGGATGC 58.291 33.333 0.00 0.00 31.97 3.91
3311 4107 6.670695 AACTTATTTTTGTTCCAGGATGCT 57.329 33.333 0.00 0.00 31.97 3.79
3312 4108 6.670695 ACTTATTTTTGTTCCAGGATGCTT 57.329 33.333 0.00 0.00 31.97 3.91
3313 4109 6.458210 ACTTATTTTTGTTCCAGGATGCTTG 58.542 36.000 0.00 0.00 31.97 4.01
3314 4110 4.961438 ATTTTTGTTCCAGGATGCTTGT 57.039 36.364 0.00 0.00 31.97 3.16
3315 4111 3.731652 TTTTGTTCCAGGATGCTTGTG 57.268 42.857 0.00 0.00 31.97 3.33
3316 4112 2.363306 TTGTTCCAGGATGCTTGTGT 57.637 45.000 0.00 0.00 31.97 3.72
3317 4113 3.500448 TTGTTCCAGGATGCTTGTGTA 57.500 42.857 0.00 0.00 31.97 2.90
3318 4114 3.719268 TGTTCCAGGATGCTTGTGTAT 57.281 42.857 0.00 0.00 31.97 2.29
3319 4115 3.346315 TGTTCCAGGATGCTTGTGTATG 58.654 45.455 0.00 0.00 31.97 2.39
3320 4116 3.008923 TGTTCCAGGATGCTTGTGTATGA 59.991 43.478 0.00 0.00 31.97 2.15
3321 4117 3.548745 TCCAGGATGCTTGTGTATGAG 57.451 47.619 0.00 0.00 31.97 2.90
3322 4118 2.840038 TCCAGGATGCTTGTGTATGAGT 59.160 45.455 0.00 0.00 31.97 3.41
3323 4119 4.030216 TCCAGGATGCTTGTGTATGAGTA 58.970 43.478 0.00 0.00 31.97 2.59
3324 4120 4.655649 TCCAGGATGCTTGTGTATGAGTAT 59.344 41.667 0.00 0.00 31.97 2.12
3325 4121 4.753610 CCAGGATGCTTGTGTATGAGTATG 59.246 45.833 0.00 0.00 31.97 2.39
3326 4122 5.363101 CAGGATGCTTGTGTATGAGTATGT 58.637 41.667 0.00 0.00 0.00 2.29
3327 4123 5.235831 CAGGATGCTTGTGTATGAGTATGTG 59.764 44.000 0.00 0.00 0.00 3.21
3328 4124 5.129320 AGGATGCTTGTGTATGAGTATGTGA 59.871 40.000 0.00 0.00 0.00 3.58
3329 4125 5.464722 GGATGCTTGTGTATGAGTATGTGAG 59.535 44.000 0.00 0.00 0.00 3.51
3330 4126 4.183865 TGCTTGTGTATGAGTATGTGAGC 58.816 43.478 0.00 0.00 0.00 4.26
3331 4127 4.183865 GCTTGTGTATGAGTATGTGAGCA 58.816 43.478 0.00 0.00 0.00 4.26
3332 4128 4.813161 GCTTGTGTATGAGTATGTGAGCAT 59.187 41.667 0.00 0.00 39.03 3.79
3333 4129 5.985530 GCTTGTGTATGAGTATGTGAGCATA 59.014 40.000 0.00 0.00 36.58 3.14
3334 4130 6.648310 GCTTGTGTATGAGTATGTGAGCATAT 59.352 38.462 0.00 0.00 39.49 1.78
3335 4131 7.359849 GCTTGTGTATGAGTATGTGAGCATATG 60.360 40.741 0.00 0.00 39.49 1.78
3336 4132 6.458210 TGTGTATGAGTATGTGAGCATATGG 58.542 40.000 4.56 0.00 39.49 2.74
3337 4133 6.041979 TGTGTATGAGTATGTGAGCATATGGT 59.958 38.462 7.23 7.23 39.49 3.55
3338 4134 6.587990 GTGTATGAGTATGTGAGCATATGGTC 59.412 42.308 24.74 24.74 39.49 4.02
3339 4135 6.494835 TGTATGAGTATGTGAGCATATGGTCT 59.505 38.462 29.49 16.03 42.60 3.85
3340 4136 5.205759 TGAGTATGTGAGCATATGGTCTG 57.794 43.478 29.49 0.00 42.60 3.51
3341 4137 4.651045 TGAGTATGTGAGCATATGGTCTGT 59.349 41.667 29.49 19.28 42.60 3.41
3342 4138 4.953667 AGTATGTGAGCATATGGTCTGTG 58.046 43.478 29.49 0.00 42.60 3.66
3343 4139 4.651045 AGTATGTGAGCATATGGTCTGTGA 59.349 41.667 29.49 11.66 42.60 3.58
3344 4140 3.251479 TGTGAGCATATGGTCTGTGAC 57.749 47.619 29.49 21.14 42.60 3.67
3345 4141 2.833943 TGTGAGCATATGGTCTGTGACT 59.166 45.455 29.49 5.78 42.60 3.41
3346 4142 3.261643 TGTGAGCATATGGTCTGTGACTT 59.738 43.478 29.49 0.00 42.60 3.01
3347 4143 4.466015 TGTGAGCATATGGTCTGTGACTTA 59.534 41.667 29.49 9.35 42.60 2.24
3348 4144 5.129320 TGTGAGCATATGGTCTGTGACTTAT 59.871 40.000 29.49 0.00 42.60 1.73
3349 4145 6.051717 GTGAGCATATGGTCTGTGACTTATT 58.948 40.000 29.49 0.00 42.60 1.40
3350 4146 6.540189 GTGAGCATATGGTCTGTGACTTATTT 59.460 38.462 29.49 0.00 42.60 1.40
3351 4147 6.763135 TGAGCATATGGTCTGTGACTTATTTC 59.237 38.462 29.49 5.24 42.60 2.17
3352 4148 6.653020 AGCATATGGTCTGTGACTTATTTCA 58.347 36.000 0.40 0.00 32.47 2.69
3353 4149 7.285566 AGCATATGGTCTGTGACTTATTTCAT 58.714 34.615 0.40 0.00 32.47 2.57
3354 4150 7.443575 AGCATATGGTCTGTGACTTATTTCATC 59.556 37.037 0.40 0.00 32.47 2.92
3355 4151 7.443575 GCATATGGTCTGTGACTTATTTCATCT 59.556 37.037 4.56 0.00 32.47 2.90
3356 4152 9.334947 CATATGGTCTGTGACTTATTTCATCTT 57.665 33.333 0.00 0.00 32.47 2.40
3357 4153 7.856145 ATGGTCTGTGACTTATTTCATCTTC 57.144 36.000 0.00 0.00 32.47 2.87
3358 4154 6.173339 TGGTCTGTGACTTATTTCATCTTCC 58.827 40.000 0.00 0.00 32.47 3.46
3359 4155 6.173339 GGTCTGTGACTTATTTCATCTTCCA 58.827 40.000 0.00 0.00 32.47 3.53
3360 4156 6.825721 GGTCTGTGACTTATTTCATCTTCCAT 59.174 38.462 0.00 0.00 32.47 3.41
3361 4157 7.011857 GGTCTGTGACTTATTTCATCTTCCATC 59.988 40.741 0.00 0.00 32.47 3.51
3362 4158 7.011857 GTCTGTGACTTATTTCATCTTCCATCC 59.988 40.741 0.00 0.00 0.00 3.51
3363 4159 6.122277 TGTGACTTATTTCATCTTCCATCCC 58.878 40.000 0.00 0.00 0.00 3.85
3364 4160 6.069440 TGTGACTTATTTCATCTTCCATCCCT 60.069 38.462 0.00 0.00 0.00 4.20
3365 4161 6.830838 GTGACTTATTTCATCTTCCATCCCTT 59.169 38.462 0.00 0.00 0.00 3.95
3366 4162 7.340487 GTGACTTATTTCATCTTCCATCCCTTT 59.660 37.037 0.00 0.00 0.00 3.11
3367 4163 7.340232 TGACTTATTTCATCTTCCATCCCTTTG 59.660 37.037 0.00 0.00 0.00 2.77
3368 4164 7.184862 ACTTATTTCATCTTCCATCCCTTTGT 58.815 34.615 0.00 0.00 0.00 2.83
3369 4165 7.675619 ACTTATTTCATCTTCCATCCCTTTGTT 59.324 33.333 0.00 0.00 0.00 2.83
3370 4166 9.189156 CTTATTTCATCTTCCATCCCTTTGTTA 57.811 33.333 0.00 0.00 0.00 2.41
3371 4167 9.540538 TTATTTCATCTTCCATCCCTTTGTTAA 57.459 29.630 0.00 0.00 0.00 2.01
3372 4168 7.847711 TTTCATCTTCCATCCCTTTGTTAAA 57.152 32.000 0.00 0.00 0.00 1.52
3373 4169 6.834168 TCATCTTCCATCCCTTTGTTAAAC 57.166 37.500 0.00 0.00 0.00 2.01
3374 4170 6.552008 TCATCTTCCATCCCTTTGTTAAACT 58.448 36.000 0.00 0.00 0.00 2.66
3375 4171 7.010160 TCATCTTCCATCCCTTTGTTAAACTT 58.990 34.615 0.00 0.00 0.00 2.66
3573 4369 2.545742 GCACACTTTTAGTTGGGCAAGG 60.546 50.000 0.00 0.00 29.93 3.61
3715 4511 2.094026 GCTTTCCGATTTTGGATTGGCT 60.094 45.455 0.00 0.00 38.00 4.75
3782 4578 2.007608 GAACTTTCGGGTATGCCACTC 58.992 52.381 1.04 0.00 36.17 3.51
3815 4613 4.699925 TTTACAGTACCTGGCTTCAGTT 57.300 40.909 0.00 0.00 36.81 3.16
3816 4614 2.550830 ACAGTACCTGGCTTCAGTTG 57.449 50.000 0.00 0.00 36.81 3.16
3824 4622 2.629617 CCTGGCTTCAGTTGTGGAAATT 59.370 45.455 0.00 0.00 36.81 1.82
3831 4629 6.260714 GGCTTCAGTTGTGGAAATTTTTGATT 59.739 34.615 0.00 0.00 0.00 2.57
3834 4632 9.493206 CTTCAGTTGTGGAAATTTTTGATTTTG 57.507 29.630 0.00 0.00 0.00 2.44
3835 4633 8.558973 TCAGTTGTGGAAATTTTTGATTTTGT 57.441 26.923 0.00 0.00 0.00 2.83
3836 4634 9.007901 TCAGTTGTGGAAATTTTTGATTTTGTT 57.992 25.926 0.00 0.00 0.00 2.83
3837 4635 9.276397 CAGTTGTGGAAATTTTTGATTTTGTTC 57.724 29.630 0.00 0.00 0.00 3.18
3838 4636 9.007901 AGTTGTGGAAATTTTTGATTTTGTTCA 57.992 25.926 0.00 0.00 0.00 3.18
3887 4726 2.030007 GCACTGAACTTTTATGCTGCCA 60.030 45.455 0.00 0.00 33.44 4.92
3890 4729 4.081406 ACTGAACTTTTATGCTGCCATCA 58.919 39.130 0.00 0.00 32.85 3.07
3909 4748 0.261696 ATTTCAGGTATGTGGCCCCC 59.738 55.000 0.00 0.00 0.00 5.40
3912 4751 2.768344 AGGTATGTGGCCCCCGAG 60.768 66.667 0.00 0.00 0.00 4.63
3945 4784 4.341520 ACAGGTCTGTTAAACGAGAAGAGT 59.658 41.667 0.00 0.00 41.83 3.24
3951 4790 5.920840 TCTGTTAAACGAGAAGAGTGATGTG 59.079 40.000 0.00 0.00 0.00 3.21
3960 4799 5.692204 CGAGAAGAGTGATGTGTACAGTTTT 59.308 40.000 0.00 0.00 0.00 2.43
3972 4811 1.370900 CAGTTTTGGCGTGCTGCTC 60.371 57.895 0.00 0.00 45.43 4.26
4002 4841 0.119155 TGACTGGGAGGGATCCTGTT 59.881 55.000 12.58 0.00 36.74 3.16
4059 4898 5.548181 ATTTCTAGTATTCCCTCCGTTCC 57.452 43.478 0.00 0.00 0.00 3.62
4060 4899 3.675348 TCTAGTATTCCCTCCGTTCCA 57.325 47.619 0.00 0.00 0.00 3.53
4061 4900 3.985127 TCTAGTATTCCCTCCGTTCCAA 58.015 45.455 0.00 0.00 0.00 3.53
4062 4901 4.355549 TCTAGTATTCCCTCCGTTCCAAA 58.644 43.478 0.00 0.00 0.00 3.28
4063 4902 4.778958 TCTAGTATTCCCTCCGTTCCAAAA 59.221 41.667 0.00 0.00 0.00 2.44
4064 4903 4.586306 AGTATTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
4065 4904 4.930696 AGTATTCCCTCCGTTCCAAAATT 58.069 39.130 0.00 0.00 0.00 1.82
4068 4907 3.518992 TCCCTCCGTTCCAAAATTCTT 57.481 42.857 0.00 0.00 0.00 2.52
4069 4908 3.153919 TCCCTCCGTTCCAAAATTCTTG 58.846 45.455 0.00 0.00 0.00 3.02
4070 4909 2.890945 CCCTCCGTTCCAAAATTCTTGT 59.109 45.455 0.00 0.00 0.00 3.16
4072 4911 3.821033 CCTCCGTTCCAAAATTCTTGTCT 59.179 43.478 0.00 0.00 0.00 3.41
4073 4912 4.278419 CCTCCGTTCCAAAATTCTTGTCTT 59.722 41.667 0.00 0.00 0.00 3.01
4074 4913 5.472137 CCTCCGTTCCAAAATTCTTGTCTTA 59.528 40.000 0.00 0.00 0.00 2.10
4075 4914 6.348540 CCTCCGTTCCAAAATTCTTGTCTTAG 60.349 42.308 0.00 0.00 0.00 2.18
4077 4916 6.940298 TCCGTTCCAAAATTCTTGTCTTAGAT 59.060 34.615 0.00 0.00 0.00 1.98
4080 4919 8.905702 CGTTCCAAAATTCTTGTCTTAGATTTG 58.094 33.333 0.00 0.00 29.84 2.32
4081 4920 9.750125 GTTCCAAAATTCTTGTCTTAGATTTGT 57.250 29.630 0.00 0.00 28.79 2.83
4082 4921 9.965824 TTCCAAAATTCTTGTCTTAGATTTGTC 57.034 29.630 0.00 0.00 28.79 3.18
4092 4931 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
4093 4932 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
4094 4933 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
4095 4934 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
4096 4935 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
4113 4952 8.792831 ACGGATGTATCTAATACTAAAACGTG 57.207 34.615 0.00 0.00 36.70 4.49
4114 4953 8.623903 ACGGATGTATCTAATACTAAAACGTGA 58.376 33.333 0.00 0.00 36.70 4.35
4115 4954 8.899776 CGGATGTATCTAATACTAAAACGTGAC 58.100 37.037 0.00 0.00 36.70 3.67
4116 4955 9.962783 GGATGTATCTAATACTAAAACGTGACT 57.037 33.333 0.00 0.00 36.70 3.41
4126 4965 6.963049 ACTAAAACGTGACTTGATACATCC 57.037 37.500 0.00 0.00 0.00 3.51
4128 4967 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
4129 4968 3.146618 ACGTGACTTGATACATCCGTC 57.853 47.619 0.00 0.00 0.00 4.79
4130 4969 2.753452 ACGTGACTTGATACATCCGTCT 59.247 45.455 0.00 0.00 31.56 4.18
4132 4971 4.174009 CGTGACTTGATACATCCGTCTTT 58.826 43.478 9.00 0.00 31.56 2.52
4133 4972 5.106038 ACGTGACTTGATACATCCGTCTTTA 60.106 40.000 0.00 0.00 31.56 1.85
4135 4974 6.561614 GTGACTTGATACATCCGTCTTTAGA 58.438 40.000 9.00 0.00 31.56 2.10
4136 4975 6.472808 GTGACTTGATACATCCGTCTTTAGAC 59.527 42.308 0.00 0.00 41.47 2.59
4137 4976 6.152154 TGACTTGATACATCCGTCTTTAGACA 59.848 38.462 10.27 0.00 44.99 3.41
4143 4982 8.909923 TGATACATCCGTCTTTAGACAAATCTA 58.090 33.333 10.27 0.00 44.99 1.98
4144 4983 9.745880 GATACATCCGTCTTTAGACAAATCTAA 57.254 33.333 10.27 0.00 44.17 2.10
4146 4985 7.837863 ACATCCGTCTTTAGACAAATCTAAGA 58.162 34.615 10.27 0.00 45.93 2.10
4147 4986 7.760340 ACATCCGTCTTTAGACAAATCTAAGAC 59.240 37.037 10.27 0.00 45.93 3.01
4148 4987 7.223260 TCCGTCTTTAGACAAATCTAAGACA 57.777 36.000 10.27 5.74 45.93 3.41
4150 4989 7.813148 TCCGTCTTTAGACAAATCTAAGACAAG 59.187 37.037 10.27 12.05 45.93 3.16
4151 4990 7.813148 CCGTCTTTAGACAAATCTAAGACAAGA 59.187 37.037 10.27 8.54 45.93 3.02
4152 4991 9.193133 CGTCTTTAGACAAATCTAAGACAAGAA 57.807 33.333 10.27 0.00 45.93 2.52
4159 4998 9.354673 AGACAAATCTAAGACAAGAATTTTGGA 57.645 29.630 0.00 0.00 33.04 3.53
4160 4999 9.965824 GACAAATCTAAGACAAGAATTTTGGAA 57.034 29.630 0.00 0.00 33.04 3.53
4161 5000 9.750125 ACAAATCTAAGACAAGAATTTTGGAAC 57.250 29.630 0.00 0.00 33.04 3.62
4163 5002 6.554334 TCTAAGACAAGAATTTTGGAACGG 57.446 37.500 0.00 0.00 0.00 4.44
4164 5003 6.292923 TCTAAGACAAGAATTTTGGAACGGA 58.707 36.000 0.00 0.00 0.00 4.69
4165 5004 5.438761 AAGACAAGAATTTTGGAACGGAG 57.561 39.130 0.00 0.00 0.00 4.63
4166 5005 3.821033 AGACAAGAATTTTGGAACGGAGG 59.179 43.478 0.00 0.00 0.00 4.30
4169 5008 3.073274 AGAATTTTGGAACGGAGGGAG 57.927 47.619 0.00 0.00 0.00 4.30
4170 5009 2.375509 AGAATTTTGGAACGGAGGGAGT 59.624 45.455 0.00 0.00 0.00 3.85
4172 5011 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
4174 5013 2.019807 TTGGAACGGAGGGAGTACTT 57.980 50.000 0.00 0.00 0.00 2.24
4175 5014 1.263356 TGGAACGGAGGGAGTACTTG 58.737 55.000 0.00 0.00 0.00 3.16
4176 5015 1.264295 GGAACGGAGGGAGTACTTGT 58.736 55.000 0.00 0.00 0.00 3.16
4177 5016 1.204231 GGAACGGAGGGAGTACTTGTC 59.796 57.143 0.00 0.00 0.00 3.18
4178 5017 1.891150 GAACGGAGGGAGTACTTGTCA 59.109 52.381 0.00 0.00 0.00 3.58
4184 5091 3.067833 GAGGGAGTACTTGTCAAAGTGC 58.932 50.000 0.00 0.25 46.30 4.40
4192 5099 2.624364 ACTTGTCAAAGTGCATCATGCA 59.376 40.909 8.71 8.71 45.12 3.96
4205 5124 0.179702 TCATGCATGCTCAGGAGTCC 59.820 55.000 22.25 0.00 0.00 3.85
4208 5127 0.107361 TGCATGCTCAGGAGTCCATG 60.107 55.000 20.33 7.00 0.00 3.66
4213 5132 1.153208 CTCAGGAGTCCATGCCAGC 60.153 63.158 12.86 0.00 0.00 4.85
4222 5141 0.254462 TCCATGCCAGCGTCCATTTA 59.746 50.000 0.00 0.00 0.00 1.40
4223 5142 1.133823 TCCATGCCAGCGTCCATTTAT 60.134 47.619 0.00 0.00 0.00 1.40
4227 5146 4.202101 CCATGCCAGCGTCCATTTATTTTA 60.202 41.667 0.00 0.00 0.00 1.52
4229 5148 4.739195 TGCCAGCGTCCATTTATTTTAAC 58.261 39.130 0.00 0.00 0.00 2.01
4230 5149 4.218635 TGCCAGCGTCCATTTATTTTAACA 59.781 37.500 0.00 0.00 0.00 2.41
4231 5150 4.798387 GCCAGCGTCCATTTATTTTAACAG 59.202 41.667 0.00 0.00 0.00 3.16
4232 5151 4.798387 CCAGCGTCCATTTATTTTAACAGC 59.202 41.667 0.00 0.00 0.00 4.40
4233 5152 5.398169 CAGCGTCCATTTATTTTAACAGCA 58.602 37.500 0.00 0.00 0.00 4.41
4237 5161 7.602265 AGCGTCCATTTATTTTAACAGCAAAAT 59.398 29.630 0.00 0.00 40.37 1.82
4257 5181 9.678941 GCAAAATATCATTTAAACCTAGTAGCC 57.321 33.333 0.00 0.00 0.00 3.93
4262 5186 5.997843 TCATTTAAACCTAGTAGCCCTTCC 58.002 41.667 0.00 0.00 0.00 3.46
4268 5192 1.685517 CCTAGTAGCCCTTCCGTTACC 59.314 57.143 0.00 0.00 0.00 2.85
4271 5195 2.263545 AGTAGCCCTTCCGTTACCTTT 58.736 47.619 0.00 0.00 0.00 3.11
4278 5202 2.621526 CCTTCCGTTACCTTTGCAACTT 59.378 45.455 0.00 0.00 0.00 2.66
4279 5203 3.067601 CCTTCCGTTACCTTTGCAACTTT 59.932 43.478 0.00 0.00 0.00 2.66
4286 5210 7.435784 TCCGTTACCTTTGCAACTTTATTTTTC 59.564 33.333 0.00 0.00 0.00 2.29
4287 5211 7.436970 CCGTTACCTTTGCAACTTTATTTTTCT 59.563 33.333 0.00 0.00 0.00 2.52
4288 5212 8.476925 CGTTACCTTTGCAACTTTATTTTTCTC 58.523 33.333 0.00 0.00 0.00 2.87
4289 5213 8.761497 GTTACCTTTGCAACTTTATTTTTCTCC 58.239 33.333 0.00 0.00 0.00 3.71
4291 5215 8.245195 ACCTTTGCAACTTTATTTTTCTCCTA 57.755 30.769 0.00 0.00 0.00 2.94
4292 5216 8.870116 ACCTTTGCAACTTTATTTTTCTCCTAT 58.130 29.630 0.00 0.00 0.00 2.57
4296 5220 9.474920 TTGCAACTTTATTTTTCTCCTATTGTG 57.525 29.630 0.00 0.00 0.00 3.33
4297 5221 7.598493 TGCAACTTTATTTTTCTCCTATTGTGC 59.402 33.333 0.00 0.00 0.00 4.57
4298 5222 7.814587 GCAACTTTATTTTTCTCCTATTGTGCT 59.185 33.333 0.00 0.00 0.00 4.40
4299 5223 9.132521 CAACTTTATTTTTCTCCTATTGTGCTG 57.867 33.333 0.00 0.00 0.00 4.41
4300 5224 8.409358 ACTTTATTTTTCTCCTATTGTGCTGT 57.591 30.769 0.00 0.00 0.00 4.40
4301 5225 8.860088 ACTTTATTTTTCTCCTATTGTGCTGTT 58.140 29.630 0.00 0.00 0.00 3.16
4304 5228 9.515226 TTATTTTTCTCCTATTGTGCTGTTAGT 57.485 29.630 0.00 0.00 0.00 2.24
4305 5229 7.817418 TTTTTCTCCTATTGTGCTGTTAGTT 57.183 32.000 0.00 0.00 0.00 2.24
4306 5230 7.817418 TTTTCTCCTATTGTGCTGTTAGTTT 57.183 32.000 0.00 0.00 0.00 2.66
4307 5231 6.801539 TTCTCCTATTGTGCTGTTAGTTTG 57.198 37.500 0.00 0.00 0.00 2.93
4308 5232 5.865085 TCTCCTATTGTGCTGTTAGTTTGT 58.135 37.500 0.00 0.00 0.00 2.83
4309 5233 6.296026 TCTCCTATTGTGCTGTTAGTTTGTT 58.704 36.000 0.00 0.00 0.00 2.83
4310 5234 7.446769 TCTCCTATTGTGCTGTTAGTTTGTTA 58.553 34.615 0.00 0.00 0.00 2.41
4311 5235 7.602644 TCTCCTATTGTGCTGTTAGTTTGTTAG 59.397 37.037 0.00 0.00 0.00 2.34
4355 5286 8.212317 TGTATGTTGATCAAACTATGACATGG 57.788 34.615 10.35 0.00 41.93 3.66
4495 5426 4.742201 CTAGTGGCGCTGCGGTGT 62.742 66.667 24.61 0.00 0.00 4.16
4606 5537 0.970937 CTTACCCACCGCTCCTCTCA 60.971 60.000 0.00 0.00 0.00 3.27
4618 5549 2.098770 GCTCCTCTCACAATGGCATTTC 59.901 50.000 10.65 0.00 0.00 2.17
4635 5566 4.599041 CATTTCCTACCATTTCCTGACCA 58.401 43.478 0.00 0.00 0.00 4.02
4650 5581 6.174720 TCCTGACCAATATACCTGAATGTC 57.825 41.667 0.00 0.00 0.00 3.06
4664 5595 6.302269 ACCTGAATGTCTTGTTCTGATCTTT 58.698 36.000 0.00 0.00 0.00 2.52
4665 5596 6.206243 ACCTGAATGTCTTGTTCTGATCTTTG 59.794 38.462 0.00 0.00 0.00 2.77
4866 5800 4.565861 CCGAGGGTAGTAGAGATAGCATGA 60.566 50.000 0.00 0.00 0.00 3.07
4867 5801 5.189928 CGAGGGTAGTAGAGATAGCATGAT 58.810 45.833 0.00 0.00 0.00 2.45
4868 5802 5.065859 CGAGGGTAGTAGAGATAGCATGATG 59.934 48.000 0.00 0.00 0.00 3.07
5326 6316 5.678483 GCATGCTAGATGTGTGTAAAATTCG 59.322 40.000 11.37 0.00 0.00 3.34
5585 6576 4.569719 ACCAACTTCTACAATACTGGGG 57.430 45.455 0.00 0.00 0.00 4.96
5763 6762 0.330604 ATGCTCCTGCCATGAACAGT 59.669 50.000 12.83 0.00 38.71 3.55
5778 6777 9.691362 GCCATGAACAGTAAAATAGAAAGAAAA 57.309 29.630 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 2.278330 GGGGCAAGAACAGGCAAGG 61.278 63.158 0.00 0.00 0.00 3.61
99 100 0.960364 GAGCGAATGGGGCAAGAACA 60.960 55.000 0.00 0.00 0.00 3.18
183 184 3.251487 CACAGCATCAGTCAACACATTGA 59.749 43.478 0.00 0.00 42.73 2.57
184 185 3.004002 ACACAGCATCAGTCAACACATTG 59.996 43.478 0.00 0.00 37.14 2.82
185 186 3.004002 CACACAGCATCAGTCAACACATT 59.996 43.478 0.00 0.00 0.00 2.71
186 187 2.551032 CACACAGCATCAGTCAACACAT 59.449 45.455 0.00 0.00 0.00 3.21
189 190 1.941975 CACACACAGCATCAGTCAACA 59.058 47.619 0.00 0.00 0.00 3.33
190 191 1.334419 GCACACACAGCATCAGTCAAC 60.334 52.381 0.00 0.00 0.00 3.18
191 192 0.946528 GCACACACAGCATCAGTCAA 59.053 50.000 0.00 0.00 0.00 3.18
194 195 0.887836 CCTGCACACACAGCATCAGT 60.888 55.000 0.00 0.00 41.82 3.41
195 196 0.887836 ACCTGCACACACAGCATCAG 60.888 55.000 0.00 0.00 41.82 2.90
196 197 0.396060 TACCTGCACACACAGCATCA 59.604 50.000 0.00 0.00 41.82 3.07
197 198 1.081892 CTACCTGCACACACAGCATC 58.918 55.000 0.00 0.00 41.82 3.91
198 199 0.397941 ACTACCTGCACACACAGCAT 59.602 50.000 0.00 0.00 41.82 3.79
203 204 1.002250 CGACGACTACCTGCACACAC 61.002 60.000 0.00 0.00 0.00 3.82
204 205 1.284715 CGACGACTACCTGCACACA 59.715 57.895 0.00 0.00 0.00 3.72
205 206 1.443872 CCGACGACTACCTGCACAC 60.444 63.158 0.00 0.00 0.00 3.82
206 207 2.632544 CCCGACGACTACCTGCACA 61.633 63.158 0.00 0.00 0.00 4.57
525 543 5.123027 AGCACTAATAAGAACAGAAAGCAGC 59.877 40.000 0.00 0.00 0.00 5.25
579 600 2.680841 TGCATTACGTTGGAAGCATACC 59.319 45.455 0.00 0.00 0.00 2.73
623 644 3.520290 ATCAGAACATGGCATGCTTTG 57.480 42.857 26.70 19.58 0.00 2.77
735 995 4.002982 TCAGAACATGGCATACACTTCAC 58.997 43.478 0.00 0.00 0.00 3.18
748 1008 9.053840 ACAAGCTGAGATTAATATCAGAACATG 57.946 33.333 33.73 26.28 46.23 3.21
756 1016 7.727331 AGCAAGACAAGCTGAGATTAATATC 57.273 36.000 3.04 3.04 41.61 1.63
1191 1463 5.128919 ACTGCAATCTCCTTTGATACATCC 58.871 41.667 0.00 0.00 0.00 3.51
1215 1487 2.348620 TGCTGGCGCACTTCATCT 59.651 55.556 10.83 0.00 42.25 2.90
1230 1502 4.154737 TGATAGTTCTCAACAACAGCATGC 59.845 41.667 10.51 10.51 42.53 4.06
1251 1523 1.949525 GTGTGGCTTTCTTGAGCTTGA 59.050 47.619 0.00 0.00 42.32 3.02
1256 1528 2.291741 GTCAAGGTGTGGCTTTCTTGAG 59.708 50.000 11.26 0.00 43.92 3.02
1257 1529 2.297701 GTCAAGGTGTGGCTTTCTTGA 58.702 47.619 0.00 0.00 41.96 3.02
1272 1544 0.868406 GTTTCTCCTGCACCGTCAAG 59.132 55.000 0.00 0.00 0.00 3.02
1347 1619 1.872952 TGGCTCAAATTATCGGCATCG 59.127 47.619 0.00 0.00 37.82 3.84
1353 1625 2.540361 GCTGCACTGGCTCAAATTATCG 60.540 50.000 0.00 0.00 41.91 2.92
1410 1682 1.746615 GCTGCCTTCATCGCCAGAA 60.747 57.895 0.00 0.00 0.00 3.02
1755 2044 2.756760 CCTGCAGTGCCATATCAAAACT 59.243 45.455 13.72 0.00 0.00 2.66
1842 2131 2.293677 ACAATATCCTAGCAGACGGACG 59.706 50.000 0.00 0.00 30.90 4.79
1895 2184 1.687054 CCATCCATTGGTGCAGGTGAT 60.687 52.381 1.86 0.00 40.99 3.06
1966 2255 4.310769 ACTCTAGTGTGCAAGTGAACATC 58.689 43.478 0.00 0.00 35.73 3.06
2045 2334 5.828299 TTGACAGTTCCACGAAGAAAAAT 57.172 34.783 0.00 0.00 0.00 1.82
2215 2946 3.054361 AGCACAATATTCCCCGAAGTTCT 60.054 43.478 0.56 0.00 0.00 3.01
2222 2953 2.917933 TCAAGAGCACAATATTCCCCG 58.082 47.619 0.00 0.00 0.00 5.73
2262 3031 2.710096 TGTAAAGCTATGACAGGGCC 57.290 50.000 0.00 0.00 0.00 5.80
2295 3064 7.232534 ACCTTTAACAGTTTTGATATGCTTGGA 59.767 33.333 0.00 0.00 0.00 3.53
2313 3082 3.509575 TCATGCCACCATTGACCTTTAAC 59.490 43.478 0.00 0.00 0.00 2.01
2420 3189 8.913487 AATGCTTGATTCTGATGACACATATA 57.087 30.769 0.00 0.00 0.00 0.86
2422 3191 7.201758 GGAAATGCTTGATTCTGATGACACATA 60.202 37.037 0.00 0.00 0.00 2.29
2454 3223 2.028876 ACAGTTTGCCAACCAAGTACC 58.971 47.619 0.00 0.00 34.34 3.34
2460 3229 1.394618 GTACCACAGTTTGCCAACCA 58.605 50.000 0.00 0.00 32.70 3.67
2518 3287 2.047274 GCCGTGACAGCTTAGGCA 60.047 61.111 0.00 0.00 46.48 4.75
2554 3326 6.174720 TCCTATCTTGATGGCGATTTAAGT 57.825 37.500 0.00 0.00 0.00 2.24
2624 3399 5.719085 AGAAGACATCACTGACCATTAGAGT 59.281 40.000 0.00 0.00 0.00 3.24
2666 3441 4.570772 ACGTGTACATTGTATTGGCTGATC 59.429 41.667 0.00 0.00 0.00 2.92
2740 3518 4.367039 TTCCACCAACTTAGCTAAGCTT 57.633 40.909 29.39 20.09 40.44 3.74
2741 3519 4.327680 CTTTCCACCAACTTAGCTAAGCT 58.672 43.478 29.39 17.67 43.41 3.74
2870 3649 5.033589 AGCCAGATATGTCAGGAAGAAAG 57.966 43.478 5.01 0.00 33.04 2.62
2879 3658 5.395657 CCTGTTTCTGTAGCCAGATATGTCA 60.396 44.000 0.00 0.00 46.80 3.58
2945 3727 3.009033 TCGGATGTTTGTCAAAGGGAGAT 59.991 43.478 0.00 0.00 0.00 2.75
2990 3772 4.266029 GCTGCCAATGATACGAAACAATTG 59.734 41.667 3.24 3.24 0.00 2.32
3009 3797 8.255394 AGTGGAAAACAAAAATATATTGCTGC 57.745 30.769 0.00 0.00 0.00 5.25
3102 3897 9.632807 GCTTATGTCCTACAGAATATCTTACTG 57.367 37.037 0.00 0.00 37.62 2.74
3103 3898 9.368416 TGCTTATGTCCTACAGAATATCTTACT 57.632 33.333 0.00 0.00 28.14 2.24
3104 3899 9.632807 CTGCTTATGTCCTACAGAATATCTTAC 57.367 37.037 0.00 0.00 28.14 2.34
3120 3915 5.438761 AGAAACCACAAACTGCTTATGTC 57.561 39.130 0.00 0.00 0.00 3.06
3135 3930 1.764134 ACACTGTTCCCGTAGAAACCA 59.236 47.619 0.00 0.00 35.85 3.67
3168 3963 4.259356 CACAGAGCTGAATCTTCATGGAA 58.741 43.478 4.21 0.00 36.46 3.53
3293 4089 4.101430 ACACAAGCATCCTGGAACAAAAAT 59.899 37.500 0.00 0.00 38.70 1.82
3294 4090 3.450457 ACACAAGCATCCTGGAACAAAAA 59.550 39.130 0.00 0.00 38.70 1.94
3295 4091 3.030291 ACACAAGCATCCTGGAACAAAA 58.970 40.909 0.00 0.00 38.70 2.44
3296 4092 2.665165 ACACAAGCATCCTGGAACAAA 58.335 42.857 0.00 0.00 38.70 2.83
3297 4093 2.363306 ACACAAGCATCCTGGAACAA 57.637 45.000 0.00 0.00 38.70 2.83
3298 4094 3.008923 TCATACACAAGCATCCTGGAACA 59.991 43.478 0.00 0.00 0.00 3.18
3299 4095 3.609853 TCATACACAAGCATCCTGGAAC 58.390 45.455 0.00 0.00 0.00 3.62
3300 4096 3.264193 ACTCATACACAAGCATCCTGGAA 59.736 43.478 0.00 0.00 0.00 3.53
3301 4097 2.840038 ACTCATACACAAGCATCCTGGA 59.160 45.455 0.00 0.00 0.00 3.86
3302 4098 3.272574 ACTCATACACAAGCATCCTGG 57.727 47.619 0.00 0.00 0.00 4.45
3303 4099 5.235831 CACATACTCATACACAAGCATCCTG 59.764 44.000 0.00 0.00 0.00 3.86
3304 4100 5.129320 TCACATACTCATACACAAGCATCCT 59.871 40.000 0.00 0.00 0.00 3.24
3305 4101 5.359756 TCACATACTCATACACAAGCATCC 58.640 41.667 0.00 0.00 0.00 3.51
3306 4102 5.050499 GCTCACATACTCATACACAAGCATC 60.050 44.000 0.00 0.00 0.00 3.91
3307 4103 4.813161 GCTCACATACTCATACACAAGCAT 59.187 41.667 0.00 0.00 0.00 3.79
3308 4104 4.183865 GCTCACATACTCATACACAAGCA 58.816 43.478 0.00 0.00 0.00 3.91
3309 4105 4.183865 TGCTCACATACTCATACACAAGC 58.816 43.478 0.00 0.00 0.00 4.01
3310 4106 7.117379 CCATATGCTCACATACTCATACACAAG 59.883 40.741 0.00 0.00 41.50 3.16
3311 4107 6.930722 CCATATGCTCACATACTCATACACAA 59.069 38.462 0.00 0.00 41.50 3.33
3312 4108 6.041979 ACCATATGCTCACATACTCATACACA 59.958 38.462 0.00 0.00 41.50 3.72
3313 4109 6.459066 ACCATATGCTCACATACTCATACAC 58.541 40.000 0.00 0.00 41.50 2.90
3314 4110 6.494835 AGACCATATGCTCACATACTCATACA 59.505 38.462 0.00 0.00 41.50 2.29
3315 4111 6.810676 CAGACCATATGCTCACATACTCATAC 59.189 42.308 0.00 0.00 41.50 2.39
3316 4112 6.494835 ACAGACCATATGCTCACATACTCATA 59.505 38.462 0.00 0.00 41.50 2.15
3317 4113 5.306419 ACAGACCATATGCTCACATACTCAT 59.694 40.000 0.00 0.00 41.50 2.90
3318 4114 4.651045 ACAGACCATATGCTCACATACTCA 59.349 41.667 0.00 0.00 41.50 3.41
3319 4115 4.987285 CACAGACCATATGCTCACATACTC 59.013 45.833 0.00 0.00 41.50 2.59
3320 4116 4.651045 TCACAGACCATATGCTCACATACT 59.349 41.667 0.00 0.00 41.50 2.12
3321 4117 4.747108 GTCACAGACCATATGCTCACATAC 59.253 45.833 0.00 0.00 41.50 2.39
3322 4118 4.651045 AGTCACAGACCATATGCTCACATA 59.349 41.667 0.00 0.00 36.89 2.29
3323 4119 3.453717 AGTCACAGACCATATGCTCACAT 59.546 43.478 0.00 0.00 35.21 3.21
3324 4120 2.833943 AGTCACAGACCATATGCTCACA 59.166 45.455 0.00 0.00 32.18 3.58
3325 4121 3.533606 AGTCACAGACCATATGCTCAC 57.466 47.619 0.00 0.00 32.18 3.51
3326 4122 5.876651 ATAAGTCACAGACCATATGCTCA 57.123 39.130 0.00 0.00 32.18 4.26
3327 4123 6.763135 TGAAATAAGTCACAGACCATATGCTC 59.237 38.462 0.00 0.00 32.18 4.26
3328 4124 6.653020 TGAAATAAGTCACAGACCATATGCT 58.347 36.000 0.00 0.00 32.18 3.79
3329 4125 6.925610 TGAAATAAGTCACAGACCATATGC 57.074 37.500 0.00 0.00 32.18 3.14
3330 4126 8.899427 AGATGAAATAAGTCACAGACCATATG 57.101 34.615 0.00 0.00 32.18 1.78
3331 4127 9.553064 GAAGATGAAATAAGTCACAGACCATAT 57.447 33.333 0.00 0.00 32.18 1.78
3332 4128 7.987458 GGAAGATGAAATAAGTCACAGACCATA 59.013 37.037 0.00 0.00 32.18 2.74
3333 4129 6.825721 GGAAGATGAAATAAGTCACAGACCAT 59.174 38.462 0.00 0.00 32.18 3.55
3334 4130 6.173339 GGAAGATGAAATAAGTCACAGACCA 58.827 40.000 0.00 0.00 32.18 4.02
3335 4131 6.173339 TGGAAGATGAAATAAGTCACAGACC 58.827 40.000 0.00 0.00 32.18 3.85
3336 4132 7.011857 GGATGGAAGATGAAATAAGTCACAGAC 59.988 40.741 0.00 0.00 0.00 3.51
3337 4133 7.050377 GGATGGAAGATGAAATAAGTCACAGA 58.950 38.462 0.00 0.00 0.00 3.41
3338 4134 6.261826 GGGATGGAAGATGAAATAAGTCACAG 59.738 42.308 0.00 0.00 0.00 3.66
3339 4135 6.069440 AGGGATGGAAGATGAAATAAGTCACA 60.069 38.462 0.00 0.00 0.00 3.58
3340 4136 6.360618 AGGGATGGAAGATGAAATAAGTCAC 58.639 40.000 0.00 0.00 0.00 3.67
3341 4137 6.581388 AGGGATGGAAGATGAAATAAGTCA 57.419 37.500 0.00 0.00 0.00 3.41
3342 4138 7.340487 ACAAAGGGATGGAAGATGAAATAAGTC 59.660 37.037 0.00 0.00 0.00 3.01
3343 4139 7.184862 ACAAAGGGATGGAAGATGAAATAAGT 58.815 34.615 0.00 0.00 0.00 2.24
3344 4140 7.651027 ACAAAGGGATGGAAGATGAAATAAG 57.349 36.000 0.00 0.00 0.00 1.73
3345 4141 9.540538 TTAACAAAGGGATGGAAGATGAAATAA 57.459 29.630 0.00 0.00 0.00 1.40
3346 4142 9.540538 TTTAACAAAGGGATGGAAGATGAAATA 57.459 29.630 0.00 0.00 0.00 1.40
3347 4143 8.314021 GTTTAACAAAGGGATGGAAGATGAAAT 58.686 33.333 0.00 0.00 0.00 2.17
3348 4144 7.508977 AGTTTAACAAAGGGATGGAAGATGAAA 59.491 33.333 0.00 0.00 0.00 2.69
3349 4145 7.010160 AGTTTAACAAAGGGATGGAAGATGAA 58.990 34.615 0.00 0.00 0.00 2.57
3350 4146 6.552008 AGTTTAACAAAGGGATGGAAGATGA 58.448 36.000 0.00 0.00 0.00 2.92
3351 4147 6.840780 AGTTTAACAAAGGGATGGAAGATG 57.159 37.500 0.00 0.00 0.00 2.90
3352 4148 9.547279 AATAAGTTTAACAAAGGGATGGAAGAT 57.453 29.630 0.00 0.00 0.00 2.40
3353 4149 8.950007 AATAAGTTTAACAAAGGGATGGAAGA 57.050 30.769 0.00 0.00 0.00 2.87
3354 4150 9.996554 AAAATAAGTTTAACAAAGGGATGGAAG 57.003 29.630 0.00 0.00 0.00 3.46
3356 4152 9.771534 CAAAAATAAGTTTAACAAAGGGATGGA 57.228 29.630 0.00 0.00 0.00 3.41
3357 4153 9.554395 ACAAAAATAAGTTTAACAAAGGGATGG 57.446 29.630 0.00 0.00 0.00 3.51
3360 4156 9.602568 GGAACAAAAATAAGTTTAACAAAGGGA 57.397 29.630 0.00 0.00 0.00 4.20
3361 4157 9.384764 TGGAACAAAAATAAGTTTAACAAAGGG 57.615 29.630 0.00 0.00 31.92 3.95
3366 4162 9.757227 CATCCTGGAACAAAAATAAGTTTAACA 57.243 29.630 0.00 0.00 38.70 2.41
3367 4163 8.708742 GCATCCTGGAACAAAAATAAGTTTAAC 58.291 33.333 0.00 0.00 38.70 2.01
3368 4164 8.646900 AGCATCCTGGAACAAAAATAAGTTTAA 58.353 29.630 0.00 0.00 38.70 1.52
3369 4165 8.189119 AGCATCCTGGAACAAAAATAAGTTTA 57.811 30.769 0.00 0.00 38.70 2.01
3370 4166 7.066307 AGCATCCTGGAACAAAAATAAGTTT 57.934 32.000 0.00 0.00 38.70 2.66
3371 4167 6.670695 AGCATCCTGGAACAAAAATAAGTT 57.329 33.333 0.00 0.00 38.70 2.66
3372 4168 6.041979 ACAAGCATCCTGGAACAAAAATAAGT 59.958 34.615 0.00 0.00 38.70 2.24
3373 4169 6.366877 CACAAGCATCCTGGAACAAAAATAAG 59.633 38.462 0.00 0.00 38.70 1.73
3374 4170 6.183360 ACACAAGCATCCTGGAACAAAAATAA 60.183 34.615 0.00 0.00 38.70 1.40
3375 4171 5.304101 ACACAAGCATCCTGGAACAAAAATA 59.696 36.000 0.00 0.00 38.70 1.40
3610 4406 2.369860 TGGCTCTATGGCTTCATGTAGG 59.630 50.000 1.21 0.00 42.34 3.18
3810 4608 8.558973 ACAAAATCAAAAATTTCCACAACTGA 57.441 26.923 0.00 0.00 0.00 3.41
3811 4609 9.276397 GAACAAAATCAAAAATTTCCACAACTG 57.724 29.630 0.00 0.00 0.00 3.16
3815 4613 8.954350 ACATGAACAAAATCAAAAATTTCCACA 58.046 25.926 0.00 0.00 32.06 4.17
3831 4629 8.964420 GCTAACTGCTTTAATACATGAACAAA 57.036 30.769 0.00 0.00 38.95 2.83
3860 4699 5.412594 CAGCATAAAAGTTCAGTGCTCCTAA 59.587 40.000 6.02 0.00 43.68 2.69
3887 4726 2.424812 GGGGCCACATACCTGAAATGAT 60.425 50.000 4.39 0.00 0.00 2.45
3890 4729 0.261696 GGGGGCCACATACCTGAAAT 59.738 55.000 7.65 0.00 0.00 2.17
3909 4748 1.066858 AGACCTGTGTTGGCATACTCG 60.067 52.381 0.00 0.00 0.00 4.18
3912 4751 2.185004 ACAGACCTGTGTTGGCATAC 57.815 50.000 1.31 0.00 43.11 2.39
3945 4784 2.289274 CACGCCAAAACTGTACACATCA 59.711 45.455 0.00 0.00 0.00 3.07
3951 4790 0.660300 GCAGCACGCCAAAACTGTAC 60.660 55.000 0.00 0.00 32.65 2.90
3972 4811 1.002868 CCCAGTCACTGCTTCCAGG 60.003 63.158 0.00 0.00 43.53 4.45
4040 4879 3.675348 TGGAACGGAGGGAATACTAGA 57.325 47.619 0.00 0.00 0.00 2.43
4041 4880 4.748277 TTTGGAACGGAGGGAATACTAG 57.252 45.455 0.00 0.00 0.00 2.57
4042 4881 5.703730 ATTTTGGAACGGAGGGAATACTA 57.296 39.130 0.00 0.00 0.00 1.82
4043 4882 4.586306 ATTTTGGAACGGAGGGAATACT 57.414 40.909 0.00 0.00 0.00 2.12
4044 4883 4.948004 AGAATTTTGGAACGGAGGGAATAC 59.052 41.667 0.00 0.00 0.00 1.89
4045 4884 5.187621 AGAATTTTGGAACGGAGGGAATA 57.812 39.130 0.00 0.00 0.00 1.75
4048 4887 3.153919 CAAGAATTTTGGAACGGAGGGA 58.846 45.455 0.00 0.00 0.00 4.20
4049 4888 2.890945 ACAAGAATTTTGGAACGGAGGG 59.109 45.455 0.00 0.00 0.00 4.30
4050 4889 3.821033 AGACAAGAATTTTGGAACGGAGG 59.179 43.478 0.00 0.00 0.00 4.30
4051 4890 5.438761 AAGACAAGAATTTTGGAACGGAG 57.561 39.130 0.00 0.00 0.00 4.63
4052 4891 6.292923 TCTAAGACAAGAATTTTGGAACGGA 58.707 36.000 0.00 0.00 0.00 4.69
4053 4892 6.554334 TCTAAGACAAGAATTTTGGAACGG 57.446 37.500 0.00 0.00 0.00 4.44
4054 4893 8.905702 CAAATCTAAGACAAGAATTTTGGAACG 58.094 33.333 5.68 0.00 28.49 3.95
4055 4894 9.750125 ACAAATCTAAGACAAGAATTTTGGAAC 57.250 29.630 0.00 0.00 33.04 3.62
4056 4895 9.965824 GACAAATCTAAGACAAGAATTTTGGAA 57.034 29.630 0.00 0.00 33.04 3.53
4057 4896 9.354673 AGACAAATCTAAGACAAGAATTTTGGA 57.645 29.630 0.00 0.00 33.04 3.53
4065 4904 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
4068 4907 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
4069 4908 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
4070 4909 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
4087 4926 9.882996 CACGTTTTAGTATTAGATACATCCGTA 57.117 33.333 0.00 0.00 38.21 4.02
4088 4927 8.623903 TCACGTTTTAGTATTAGATACATCCGT 58.376 33.333 0.00 0.00 38.21 4.69
4089 4928 8.899776 GTCACGTTTTAGTATTAGATACATCCG 58.100 37.037 0.00 0.00 38.21 4.18
4090 4929 9.962783 AGTCACGTTTTAGTATTAGATACATCC 57.037 33.333 0.00 0.00 38.21 3.51
4100 4939 9.095065 GGATGTATCAAGTCACGTTTTAGTATT 57.905 33.333 0.00 0.00 0.00 1.89
4101 4940 7.434307 CGGATGTATCAAGTCACGTTTTAGTAT 59.566 37.037 0.00 0.00 0.00 2.12
4102 4941 6.748658 CGGATGTATCAAGTCACGTTTTAGTA 59.251 38.462 0.00 0.00 0.00 1.82
4103 4942 5.575606 CGGATGTATCAAGTCACGTTTTAGT 59.424 40.000 0.00 0.00 0.00 2.24
4104 4943 5.575606 ACGGATGTATCAAGTCACGTTTTAG 59.424 40.000 0.00 0.00 0.00 1.85
4105 4944 5.472148 ACGGATGTATCAAGTCACGTTTTA 58.528 37.500 0.00 0.00 0.00 1.52
4106 4945 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
4110 4949 3.422417 AGACGGATGTATCAAGTCACG 57.578 47.619 16.43 0.00 37.98 4.35
4111 4950 6.472808 GTCTAAAGACGGATGTATCAAGTCAC 59.527 42.308 16.43 6.81 37.98 3.67
4112 4951 6.561614 GTCTAAAGACGGATGTATCAAGTCA 58.438 40.000 16.43 2.52 37.98 3.41
4133 4972 9.354673 TCCAAAATTCTTGTCTTAGATTTGTCT 57.645 29.630 0.00 0.00 28.79 3.41
4135 4974 9.750125 GTTCCAAAATTCTTGTCTTAGATTTGT 57.250 29.630 0.00 0.00 28.79 2.83
4136 4975 8.905702 CGTTCCAAAATTCTTGTCTTAGATTTG 58.094 33.333 0.00 0.00 29.84 2.32
4137 4976 8.082242 CCGTTCCAAAATTCTTGTCTTAGATTT 58.918 33.333 0.00 0.00 0.00 2.17
4143 4982 4.278419 CCTCCGTTCCAAAATTCTTGTCTT 59.722 41.667 0.00 0.00 0.00 3.01
4144 4983 3.821033 CCTCCGTTCCAAAATTCTTGTCT 59.179 43.478 0.00 0.00 0.00 3.41
4146 4985 2.890945 CCCTCCGTTCCAAAATTCTTGT 59.109 45.455 0.00 0.00 0.00 3.16
4147 4986 3.153919 TCCCTCCGTTCCAAAATTCTTG 58.846 45.455 0.00 0.00 0.00 3.02
4148 4987 3.181433 ACTCCCTCCGTTCCAAAATTCTT 60.181 43.478 0.00 0.00 0.00 2.52
4150 4989 2.791655 ACTCCCTCCGTTCCAAAATTC 58.208 47.619 0.00 0.00 0.00 2.17
4151 4990 2.971901 ACTCCCTCCGTTCCAAAATT 57.028 45.000 0.00 0.00 0.00 1.82
4152 4991 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
4153 4992 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
4155 4994 1.621814 CAAGTACTCCCTCCGTTCCAA 59.378 52.381 0.00 0.00 0.00 3.53
4156 4995 1.263356 CAAGTACTCCCTCCGTTCCA 58.737 55.000 0.00 0.00 0.00 3.53
4158 4997 1.891150 TGACAAGTACTCCCTCCGTTC 59.109 52.381 0.00 0.00 0.00 3.95
4159 4998 2.005370 TGACAAGTACTCCCTCCGTT 57.995 50.000 0.00 0.00 0.00 4.44
4160 4999 2.005370 TTGACAAGTACTCCCTCCGT 57.995 50.000 0.00 0.00 0.00 4.69
4161 5000 2.299297 ACTTTGACAAGTACTCCCTCCG 59.701 50.000 0.00 0.00 41.81 4.63
4163 5002 3.067833 GCACTTTGACAAGTACTCCCTC 58.932 50.000 0.00 0.00 41.69 4.30
4164 5003 2.438021 TGCACTTTGACAAGTACTCCCT 59.562 45.455 0.00 0.00 41.69 4.20
4165 5004 2.846193 TGCACTTTGACAAGTACTCCC 58.154 47.619 0.00 0.00 41.69 4.30
4166 5005 4.065088 TGATGCACTTTGACAAGTACTCC 58.935 43.478 0.00 0.00 41.69 3.85
4169 5008 4.161333 GCATGATGCACTTTGACAAGTAC 58.839 43.478 13.36 0.00 41.69 2.73
4170 5009 4.424061 GCATGATGCACTTTGACAAGTA 57.576 40.909 13.36 0.00 41.69 2.24
4184 5091 1.874231 GACTCCTGAGCATGCATGATG 59.126 52.381 30.64 13.97 34.84 3.07
4192 5099 1.276859 TGGCATGGACTCCTGAGCAT 61.277 55.000 0.00 0.00 0.00 3.79
4200 5107 2.512515 GGACGCTGGCATGGACTC 60.513 66.667 0.00 0.00 0.00 3.36
4205 5124 3.441496 AAATAAATGGACGCTGGCATG 57.559 42.857 0.00 0.00 0.00 4.06
4208 5127 4.739195 TGTTAAAATAAATGGACGCTGGC 58.261 39.130 0.00 0.00 0.00 4.85
4231 5150 9.678941 GGCTACTAGGTTTAAATGATATTTTGC 57.321 33.333 0.00 0.00 0.00 3.68
4237 5161 7.472381 CGGAAGGGCTACTAGGTTTAAATGATA 60.472 40.741 0.00 0.00 0.00 2.15
4254 5178 0.608308 GCAAAGGTAACGGAAGGGCT 60.608 55.000 0.00 0.00 46.39 5.19
4255 5179 0.891904 TGCAAAGGTAACGGAAGGGC 60.892 55.000 0.00 0.00 46.39 5.19
4257 5181 2.227194 AGTTGCAAAGGTAACGGAAGG 58.773 47.619 0.00 0.00 43.42 3.46
4258 5182 3.982576 AAGTTGCAAAGGTAACGGAAG 57.017 42.857 0.00 0.00 43.42 3.46
4262 5186 8.347729 AGAAAAATAAAGTTGCAAAGGTAACG 57.652 30.769 0.00 0.00 43.42 3.18
4271 5195 7.598493 GCACAATAGGAGAAAAATAAAGTTGCA 59.402 33.333 0.00 0.00 0.00 4.08
4278 5202 9.515226 ACTAACAGCACAATAGGAGAAAAATAA 57.485 29.630 0.00 0.00 0.00 1.40
4279 5203 9.515226 AACTAACAGCACAATAGGAGAAAAATA 57.485 29.630 0.00 0.00 0.00 1.40
4286 5210 6.560253 AACAAACTAACAGCACAATAGGAG 57.440 37.500 0.00 0.00 0.00 3.69
4287 5211 6.148811 GCTAACAAACTAACAGCACAATAGGA 59.851 38.462 0.00 0.00 32.46 2.94
4288 5212 6.314784 GCTAACAAACTAACAGCACAATAGG 58.685 40.000 0.00 0.00 32.46 2.57
4289 5213 6.149474 AGGCTAACAAACTAACAGCACAATAG 59.851 38.462 0.00 0.00 33.86 1.73
4291 5215 4.827284 AGGCTAACAAACTAACAGCACAAT 59.173 37.500 0.00 0.00 33.86 2.71
4292 5216 4.036262 CAGGCTAACAAACTAACAGCACAA 59.964 41.667 0.00 0.00 33.86 3.33
4296 5220 4.537015 CAACAGGCTAACAAACTAACAGC 58.463 43.478 0.00 0.00 0.00 4.40
4297 5221 4.556699 GCCAACAGGCTAACAAACTAACAG 60.557 45.833 0.00 0.00 45.21 3.16
4298 5222 3.316868 GCCAACAGGCTAACAAACTAACA 59.683 43.478 0.00 0.00 45.21 2.41
4299 5223 3.897325 GCCAACAGGCTAACAAACTAAC 58.103 45.455 0.00 0.00 45.21 2.34
4618 5549 6.044404 AGGTATATTGGTCAGGAAATGGTAGG 59.956 42.308 0.00 0.00 0.00 3.18
4635 5566 9.553064 GATCAGAACAAGACATTCAGGTATATT 57.447 33.333 0.00 0.00 0.00 1.28
4650 5581 6.931281 TCCTTCAGTACAAAGATCAGAACAAG 59.069 38.462 9.03 0.00 0.00 3.16
4664 5595 0.406750 TCCTCCGGTCCTTCAGTACA 59.593 55.000 0.00 0.00 0.00 2.90
4665 5596 1.104630 CTCCTCCGGTCCTTCAGTAC 58.895 60.000 0.00 0.00 0.00 2.73
5112 6076 2.859165 AAATGAAGCGAGGAAGGACA 57.141 45.000 0.00 0.00 0.00 4.02
5119 6083 4.731773 GCATAGTGGAAAAATGAAGCGAGG 60.732 45.833 0.00 0.00 0.00 4.63
5120 6084 4.095483 AGCATAGTGGAAAAATGAAGCGAG 59.905 41.667 0.00 0.00 0.00 5.03
5326 6316 7.024340 AGCACATCAGAACATATTTCATGAC 57.976 36.000 0.00 0.00 0.00 3.06
5429 6419 7.069208 TGCAAGGTTTCATGGCATTTATATACA 59.931 33.333 0.00 0.00 0.00 2.29
5581 6572 5.129650 TGATGAATCTAACGATACAACCCCA 59.870 40.000 0.00 0.00 0.00 4.96
5715 6714 7.136119 AGCTCGAGATTAGAAGAATACTTTCG 58.864 38.462 18.75 0.00 36.93 3.46
5721 6720 7.383572 GCATTTGAGCTCGAGATTAGAAGAATA 59.616 37.037 18.75 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.