Multiple sequence alignment - TraesCS1D01G442700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G442700 chr1D 100.000 2333 0 0 1 2333 486921475 486923807 0.000000e+00 4309.0
1 TraesCS1D01G442700 chr1B 90.434 1244 22 26 990 2204 678112513 678113688 0.000000e+00 1548.0
2 TraesCS1D01G442700 chr1B 93.889 360 10 10 655 1002 678107378 678107737 1.230000e-147 532.0
3 TraesCS1D01G442700 chr1B 100.000 80 0 0 2232 2311 678113686 678113765 5.190000e-32 148.0
4 TraesCS1D01G442700 chr7D 91.351 659 36 11 1 652 174292146 174292790 0.000000e+00 881.0
5 TraesCS1D01G442700 chr7D 80.547 1316 109 62 799 2037 66513331 66514576 0.000000e+00 876.0
6 TraesCS1D01G442700 chr7D 82.755 1009 81 53 799 1736 66484565 66485551 0.000000e+00 813.0
7 TraesCS1D01G442700 chr7D 81.647 850 86 44 731 1526 68935427 68934594 1.950000e-180 641.0
8 TraesCS1D01G442700 chr7D 80.485 784 56 41 730 1471 68806224 68805496 5.750000e-141 510.0
9 TraesCS1D01G442700 chr7D 84.162 543 51 26 733 1253 68924435 68923906 5.790000e-136 494.0
10 TraesCS1D01G442700 chr7D 82.625 541 50 19 1632 2135 68923041 68922508 2.750000e-119 438.0
11 TraesCS1D01G442700 chr7D 95.337 193 8 1 2141 2333 66514702 66514893 2.910000e-79 305.0
12 TraesCS1D01G442700 chr7D 94.819 193 9 1 2141 2333 68804233 68804042 1.360000e-77 300.0
13 TraesCS1D01G442700 chr7D 87.817 197 17 2 1841 2037 68804539 68804350 8.390000e-55 224.0
14 TraesCS1D01G442700 chr7D 85.093 161 16 7 2173 2333 66545331 66545483 8.630000e-35 158.0
15 TraesCS1D01G442700 chr7D 95.000 80 4 0 2037 2116 68804309 68804230 2.430000e-25 126.0
16 TraesCS1D01G442700 chr7B 84.788 848 59 24 977 1809 10241549 10240757 0.000000e+00 787.0
17 TraesCS1D01G442700 chr7B 94.262 366 20 1 977 1341 7727880 7728245 2.020000e-155 558.0
18 TraesCS1D01G442700 chr7B 82.512 629 50 36 739 1340 10175201 10174606 4.480000e-137 497.0
19 TraesCS1D01G442700 chr7B 85.422 391 41 7 1648 2037 9814745 9814370 2.170000e-105 392.0
20 TraesCS1D01G442700 chr7B 81.299 508 54 17 1632 2105 10104899 10104399 7.870000e-100 374.0
21 TraesCS1D01G442700 chr7B 93.750 192 11 1 2142 2333 9814252 9814062 1.050000e-73 287.0
22 TraesCS1D01G442700 chr7B 93.011 186 12 1 2148 2333 10104392 10104208 1.060000e-68 270.0
23 TraesCS1D01G442700 chr7B 82.803 314 29 12 1438 1736 7728319 7728622 8.270000e-65 257.0
24 TraesCS1D01G442700 chr7B 77.667 300 45 12 1627 1919 10584236 10583952 1.850000e-36 163.0
25 TraesCS1D01G442700 chr7B 86.822 129 11 4 1531 1659 9814895 9814773 3.130000e-29 139.0
26 TraesCS1D01G442700 chr7B 93.750 48 3 0 807 854 10190834 10190787 3.220000e-09 73.1
27 TraesCS1D01G442700 chr5D 88.030 660 39 23 1 657 320305619 320306241 0.000000e+00 745.0
28 TraesCS1D01G442700 chr5D 92.704 233 13 2 429 657 398553727 398553495 1.340000e-87 333.0
29 TraesCS1D01G442700 chr5D 91.824 159 9 2 503 657 382012511 382012353 3.900000e-53 219.0
30 TraesCS1D01G442700 chr7A 85.471 647 54 19 731 1341 74611074 74610432 2.530000e-179 638.0
31 TraesCS1D01G442700 chr7A 85.895 553 49 19 799 1337 70893991 70894528 1.570000e-156 562.0
32 TraesCS1D01G442700 chr7A 86.258 473 51 10 857 1320 74596622 74596155 3.460000e-138 501.0
33 TraesCS1D01G442700 chr7A 86.532 297 21 7 2037 2333 71120121 71120398 2.250000e-80 309.0
34 TraesCS1D01G442700 chr7A 86.879 282 26 4 1769 2042 74604428 74604150 2.910000e-79 305.0
35 TraesCS1D01G442700 chr7A 92.228 193 14 1 2141 2333 74604038 74603847 2.950000e-69 272.0
36 TraesCS1D01G442700 chr7A 92.737 179 12 1 1559 1736 71110815 71110993 8.270000e-65 257.0
37 TraesCS1D01G442700 chr7A 94.040 151 5 2 511 657 729054473 729054323 2.330000e-55 226.0
38 TraesCS1D01G442700 chr7A 89.080 174 11 1 1644 1809 74608670 74608497 2.350000e-50 209.0
39 TraesCS1D01G442700 chr7A 77.157 394 44 18 1653 2011 74671216 74670834 1.100000e-43 187.0
40 TraesCS1D01G442700 chr7A 85.484 186 18 2 1632 1808 70780678 70780863 3.960000e-43 185.0
41 TraesCS1D01G442700 chr7A 90.991 111 10 0 1662 1772 70894859 70894969 1.440000e-32 150.0
42 TraesCS1D01G442700 chr7A 80.288 208 33 5 2037 2238 645738264 645738469 1.440000e-32 150.0
43 TraesCS1D01G442700 chr7A 90.566 106 8 2 1538 1641 70894697 70894802 3.130000e-29 139.0
44 TraesCS1D01G442700 chr7A 86.364 110 11 2 1438 1543 74610299 74610190 1.460000e-22 117.0
45 TraesCS1D01G442700 chr7A 100.000 28 0 0 1374 1401 70894583 70894610 4.000000e-03 52.8
46 TraesCS1D01G442700 chr3A 91.860 172 10 2 487 657 744176587 744176755 1.080000e-58 237.0
47 TraesCS1D01G442700 chr3A 91.824 159 9 2 503 657 235364446 235364604 3.900000e-53 219.0
48 TraesCS1D01G442700 chr3A 90.850 153 10 2 503 651 30184388 30184540 3.930000e-48 202.0
49 TraesCS1D01G442700 chr1A 91.824 159 9 2 503 657 562929711 562929553 3.900000e-53 219.0
50 TraesCS1D01G442700 chr4B 72.806 581 106 29 1769 2324 258794107 258794660 1.440000e-32 150.0
51 TraesCS1D01G442700 chr2A 96.629 89 1 1 1 87 491461255 491461343 1.870000e-31 147.0
52 TraesCS1D01G442700 chr6B 94.382 89 3 1 1 87 404361984 404361896 4.040000e-28 135.0
53 TraesCS1D01G442700 chr3B 94.186 86 3 1 4 87 46798020 46797935 1.880000e-26 130.0
54 TraesCS1D01G442700 chr3B 92.135 89 5 1 1 87 158154782 158154870 8.750000e-25 124.0
55 TraesCS1D01G442700 chrUn 83.688 141 15 4 2113 2247 84524905 84524767 2.430000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G442700 chr1D 486921475 486923807 2332 False 4309.000000 4309 100.000000 1 2333 1 chr1D.!!$F1 2332
1 TraesCS1D01G442700 chr1B 678112513 678113765 1252 False 848.000000 1548 95.217000 990 2311 2 chr1B.!!$F2 1321
2 TraesCS1D01G442700 chr7D 174292146 174292790 644 False 881.000000 881 91.351000 1 652 1 chr7D.!!$F3 651
3 TraesCS1D01G442700 chr7D 66484565 66485551 986 False 813.000000 813 82.755000 799 1736 1 chr7D.!!$F1 937
4 TraesCS1D01G442700 chr7D 68934594 68935427 833 True 641.000000 641 81.647000 731 1526 1 chr7D.!!$R1 795
5 TraesCS1D01G442700 chr7D 66513331 66514893 1562 False 590.500000 876 87.942000 799 2333 2 chr7D.!!$F4 1534
6 TraesCS1D01G442700 chr7D 68922508 68924435 1927 True 466.000000 494 83.393500 733 2135 2 chr7D.!!$R3 1402
7 TraesCS1D01G442700 chr7D 68804042 68806224 2182 True 290.000000 510 89.530250 730 2333 4 chr7D.!!$R2 1603
8 TraesCS1D01G442700 chr7B 10240757 10241549 792 True 787.000000 787 84.788000 977 1809 1 chr7B.!!$R3 832
9 TraesCS1D01G442700 chr7B 10174606 10175201 595 True 497.000000 497 82.512000 739 1340 1 chr7B.!!$R1 601
10 TraesCS1D01G442700 chr7B 7727880 7728622 742 False 407.500000 558 88.532500 977 1736 2 chr7B.!!$F1 759
11 TraesCS1D01G442700 chr7B 10104208 10104899 691 True 322.000000 374 87.155000 1632 2333 2 chr7B.!!$R6 701
12 TraesCS1D01G442700 chr7B 9814062 9814895 833 True 272.666667 392 88.664667 1531 2333 3 chr7B.!!$R5 802
13 TraesCS1D01G442700 chr5D 320305619 320306241 622 False 745.000000 745 88.030000 1 657 1 chr5D.!!$F1 656
14 TraesCS1D01G442700 chr7A 74608497 74611074 2577 True 321.333333 638 86.971667 731 1809 3 chr7A.!!$R5 1078
15 TraesCS1D01G442700 chr7A 74603847 74604428 581 True 288.500000 305 89.553500 1769 2333 2 chr7A.!!$R4 564
16 TraesCS1D01G442700 chr7A 70893991 70894969 978 False 225.950000 562 91.863000 799 1772 4 chr7A.!!$F5 973

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
726 738 0.034337 TTTCCCACCGCTGACAGTAC 59.966 55.0 3.99 0.0 0.0 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1641 3191 1.59813 GTCTGCTTCGCCCTTGTGT 60.598 57.895 0.0 0.0 0.0 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 90 5.411831 AGCCTTTCTTTGATTGAAATCCC 57.588 39.130 0.72 0.00 33.65 3.85
107 110 8.990163 AATCCCGAAATCTTATTTAGCCTTTA 57.010 30.769 0.00 0.00 0.00 1.85
138 149 6.522946 TGATTGATTGTGCAGGAAATTCAAA 58.477 32.000 0.00 0.00 0.00 2.69
143 154 4.669206 TGTGCAGGAAATTCAAATGTGT 57.331 36.364 0.00 0.00 0.00 3.72
172 183 7.821359 GCTCCTGATTATACTCTGCAAATGATA 59.179 37.037 0.00 0.00 0.00 2.15
208 219 1.155042 CTCTGCAGGAAGACACTTGC 58.845 55.000 15.13 0.00 41.97 4.01
223 234 8.798859 AAGACACTTGCAAATGATTATACTCT 57.201 30.769 15.88 1.95 0.00 3.24
237 248 7.440198 TGATTATACTCTGCTCCTTCATCTTG 58.560 38.462 0.00 0.00 0.00 3.02
255 266 1.913317 TGAGACGTGCATTGAGATCG 58.087 50.000 0.00 0.00 0.00 3.69
295 306 8.511465 TTGAGACAAAATTACTGTAGACGTAC 57.489 34.615 0.00 0.00 0.00 3.67
296 307 7.879070 TGAGACAAAATTACTGTAGACGTACT 58.121 34.615 0.00 0.00 0.00 2.73
297 308 8.019669 TGAGACAAAATTACTGTAGACGTACTC 58.980 37.037 0.00 0.00 0.00 2.59
299 310 6.088824 ACAAAATTACTGTAGACGTACTCCG 58.911 40.000 0.00 0.00 44.03 4.63
300 311 6.072508 ACAAAATTACTGTAGACGTACTCCGA 60.073 38.462 0.00 0.00 40.70 4.55
302 313 5.921004 ATTACTGTAGACGTACTCCGATC 57.079 43.478 0.00 0.00 40.70 3.69
303 314 2.200067 ACTGTAGACGTACTCCGATCG 58.800 52.381 8.51 8.51 40.70 3.69
306 317 3.461061 TGTAGACGTACTCCGATCGATT 58.539 45.455 18.66 2.28 40.70 3.34
307 318 3.246936 TGTAGACGTACTCCGATCGATTG 59.753 47.826 18.66 5.59 40.70 2.67
308 319 1.002684 AGACGTACTCCGATCGATTGC 60.003 52.381 18.66 2.66 40.70 3.56
309 320 1.002684 GACGTACTCCGATCGATTGCT 60.003 52.381 18.66 0.00 40.70 3.91
310 321 1.002684 ACGTACTCCGATCGATTGCTC 60.003 52.381 18.66 1.59 40.70 4.26
311 322 1.002792 CGTACTCCGATCGATTGCTCA 60.003 52.381 18.66 0.00 39.56 4.26
312 323 2.540973 CGTACTCCGATCGATTGCTCAA 60.541 50.000 18.66 0.00 39.56 3.02
313 324 1.927895 ACTCCGATCGATTGCTCAAC 58.072 50.000 18.66 0.00 0.00 3.18
314 325 1.204704 ACTCCGATCGATTGCTCAACA 59.795 47.619 18.66 0.00 0.00 3.33
315 326 2.159043 ACTCCGATCGATTGCTCAACAT 60.159 45.455 18.66 0.00 0.00 2.71
316 327 2.204237 TCCGATCGATTGCTCAACATG 58.796 47.619 18.66 0.00 0.00 3.21
348 359 9.739276 TGATCAGTAATTTTCCTAACATGTCTT 57.261 29.630 0.00 0.00 0.00 3.01
371 382 0.448990 TCGAATGCTCAACATGCTGC 59.551 50.000 0.00 0.00 39.60 5.25
614 626 4.400961 GGCGGCTGACCTTGAGCT 62.401 66.667 0.00 0.00 36.63 4.09
615 627 2.817396 GCGGCTGACCTTGAGCTC 60.817 66.667 6.82 6.82 36.63 4.09
616 628 2.977178 CGGCTGACCTTGAGCTCT 59.023 61.111 16.19 0.00 36.63 4.09
617 629 1.294780 CGGCTGACCTTGAGCTCTT 59.705 57.895 16.19 0.00 36.63 2.85
618 630 1.018226 CGGCTGACCTTGAGCTCTTG 61.018 60.000 16.19 7.39 36.63 3.02
619 631 0.322975 GGCTGACCTTGAGCTCTTGA 59.677 55.000 16.19 0.00 36.63 3.02
620 632 1.065564 GGCTGACCTTGAGCTCTTGAT 60.066 52.381 16.19 0.00 36.63 2.57
621 633 2.617532 GGCTGACCTTGAGCTCTTGATT 60.618 50.000 16.19 0.00 36.63 2.57
622 634 2.419324 GCTGACCTTGAGCTCTTGATTG 59.581 50.000 16.19 1.34 33.37 2.67
623 635 3.008330 CTGACCTTGAGCTCTTGATTGG 58.992 50.000 16.19 9.92 0.00 3.16
624 636 2.639347 TGACCTTGAGCTCTTGATTGGA 59.361 45.455 16.19 0.00 0.00 3.53
625 637 3.269178 GACCTTGAGCTCTTGATTGGAG 58.731 50.000 16.19 0.47 0.00 3.86
626 638 2.641815 ACCTTGAGCTCTTGATTGGAGT 59.358 45.455 16.19 0.00 33.73 3.85
627 639 3.008330 CCTTGAGCTCTTGATTGGAGTG 58.992 50.000 16.19 0.00 33.73 3.51
628 640 2.775911 TGAGCTCTTGATTGGAGTGG 57.224 50.000 16.19 0.00 33.73 4.00
629 641 2.259917 TGAGCTCTTGATTGGAGTGGA 58.740 47.619 16.19 0.00 33.73 4.02
630 642 2.235650 TGAGCTCTTGATTGGAGTGGAG 59.764 50.000 16.19 0.00 33.73 3.86
631 643 1.558756 AGCTCTTGATTGGAGTGGAGG 59.441 52.381 0.00 0.00 33.73 4.30
632 644 1.407989 GCTCTTGATTGGAGTGGAGGG 60.408 57.143 0.00 0.00 33.73 4.30
633 645 2.191400 CTCTTGATTGGAGTGGAGGGA 58.809 52.381 0.00 0.00 0.00 4.20
634 646 2.170187 CTCTTGATTGGAGTGGAGGGAG 59.830 54.545 0.00 0.00 0.00 4.30
635 647 1.211457 CTTGATTGGAGTGGAGGGAGG 59.789 57.143 0.00 0.00 0.00 4.30
636 648 1.274703 TGATTGGAGTGGAGGGAGGC 61.275 60.000 0.00 0.00 0.00 4.70
637 649 2.317149 GATTGGAGTGGAGGGAGGCG 62.317 65.000 0.00 0.00 0.00 5.52
658 670 4.292178 GGCGAGGGATCTGCGGAG 62.292 72.222 0.00 0.00 0.00 4.63
659 671 3.219928 GCGAGGGATCTGCGGAGA 61.220 66.667 9.76 9.76 0.00 3.71
660 672 2.786495 GCGAGGGATCTGCGGAGAA 61.786 63.158 11.77 0.00 0.00 2.87
661 673 1.361993 CGAGGGATCTGCGGAGAAG 59.638 63.158 11.77 0.00 0.00 2.85
662 674 1.103987 CGAGGGATCTGCGGAGAAGA 61.104 60.000 11.77 0.00 0.00 2.87
663 675 1.115467 GAGGGATCTGCGGAGAAGAA 58.885 55.000 11.77 0.00 0.00 2.52
664 676 1.068434 GAGGGATCTGCGGAGAAGAAG 59.932 57.143 11.77 0.00 0.00 2.85
665 677 1.115467 GGGATCTGCGGAGAAGAAGA 58.885 55.000 11.77 0.00 0.00 2.87
666 678 1.482593 GGGATCTGCGGAGAAGAAGAA 59.517 52.381 11.77 0.00 0.00 2.52
667 679 2.482839 GGGATCTGCGGAGAAGAAGAAG 60.483 54.545 11.77 0.00 0.00 2.85
668 680 2.200899 GATCTGCGGAGAAGAAGAAGC 58.799 52.381 11.77 0.00 0.00 3.86
669 681 0.109086 TCTGCGGAGAAGAAGAAGCG 60.109 55.000 3.28 0.00 0.00 4.68
670 682 0.389166 CTGCGGAGAAGAAGAAGCGT 60.389 55.000 0.00 0.00 0.00 5.07
671 683 0.885879 TGCGGAGAAGAAGAAGCGTA 59.114 50.000 0.00 0.00 0.00 4.42
672 684 1.135373 TGCGGAGAAGAAGAAGCGTAG 60.135 52.381 0.00 0.00 0.00 3.51
673 685 1.135344 GCGGAGAAGAAGAAGCGTAGT 60.135 52.381 0.00 0.00 0.00 2.73
674 686 2.671632 GCGGAGAAGAAGAAGCGTAGTT 60.672 50.000 0.00 0.00 0.00 2.24
675 687 3.576648 CGGAGAAGAAGAAGCGTAGTTT 58.423 45.455 0.00 0.00 0.00 2.66
676 688 3.988517 CGGAGAAGAAGAAGCGTAGTTTT 59.011 43.478 0.00 0.00 0.00 2.43
677 689 4.090210 CGGAGAAGAAGAAGCGTAGTTTTC 59.910 45.833 0.00 0.00 0.00 2.29
678 690 4.389382 GGAGAAGAAGAAGCGTAGTTTTCC 59.611 45.833 0.00 0.00 0.00 3.13
679 691 4.316645 AGAAGAAGAAGCGTAGTTTTCCC 58.683 43.478 0.00 0.00 0.00 3.97
680 692 2.685100 AGAAGAAGCGTAGTTTTCCCG 58.315 47.619 0.00 0.00 0.00 5.14
685 697 2.535588 GCGTAGTTTTCCCGCAAGA 58.464 52.632 0.00 0.00 46.26 3.02
686 698 0.869730 GCGTAGTTTTCCCGCAAGAA 59.130 50.000 0.00 0.00 46.26 2.52
687 699 1.264826 GCGTAGTTTTCCCGCAAGAAA 59.735 47.619 0.00 0.00 46.26 2.52
688 700 2.287129 GCGTAGTTTTCCCGCAAGAAAA 60.287 45.455 6.75 6.75 46.26 2.29
689 701 3.551551 CGTAGTTTTCCCGCAAGAAAAG 58.448 45.455 10.30 0.00 44.23 2.27
690 702 3.249080 CGTAGTTTTCCCGCAAGAAAAGA 59.751 43.478 10.30 1.40 44.23 2.52
691 703 4.260866 CGTAGTTTTCCCGCAAGAAAAGAA 60.261 41.667 10.30 1.31 44.23 2.52
692 704 4.729227 AGTTTTCCCGCAAGAAAAGAAA 57.271 36.364 10.30 0.00 44.23 2.52
693 705 4.682787 AGTTTTCCCGCAAGAAAAGAAAG 58.317 39.130 10.30 0.00 44.23 2.62
694 706 3.726291 TTTCCCGCAAGAAAAGAAAGG 57.274 42.857 0.00 0.00 43.02 3.11
695 707 2.649531 TCCCGCAAGAAAAGAAAGGA 57.350 45.000 0.00 0.00 43.02 3.36
696 708 2.938838 TCCCGCAAGAAAAGAAAGGAA 58.061 42.857 0.00 0.00 43.02 3.36
697 709 3.292460 TCCCGCAAGAAAAGAAAGGAAA 58.708 40.909 0.00 0.00 43.02 3.13
698 710 3.702045 TCCCGCAAGAAAAGAAAGGAAAA 59.298 39.130 0.00 0.00 43.02 2.29
699 711 4.160626 TCCCGCAAGAAAAGAAAGGAAAAA 59.839 37.500 0.00 0.00 43.02 1.94
719 731 3.934457 AAAATAGTTTTCCCACCGCTG 57.066 42.857 0.00 0.00 0.00 5.18
720 732 2.871096 AATAGTTTTCCCACCGCTGA 57.129 45.000 0.00 0.00 0.00 4.26
721 733 2.109425 ATAGTTTTCCCACCGCTGAC 57.891 50.000 0.00 0.00 0.00 3.51
722 734 0.759959 TAGTTTTCCCACCGCTGACA 59.240 50.000 0.00 0.00 0.00 3.58
723 735 0.535102 AGTTTTCCCACCGCTGACAG 60.535 55.000 0.00 0.00 0.00 3.51
724 736 0.818040 GTTTTCCCACCGCTGACAGT 60.818 55.000 3.99 0.00 0.00 3.55
725 737 0.759959 TTTTCCCACCGCTGACAGTA 59.240 50.000 3.99 0.00 0.00 2.74
726 738 0.034337 TTTCCCACCGCTGACAGTAC 59.966 55.000 3.99 0.00 0.00 2.73
727 739 2.126071 CCCACCGCTGACAGTACG 60.126 66.667 3.99 0.00 0.00 3.67
728 740 2.649034 CCACCGCTGACAGTACGT 59.351 61.111 3.99 0.00 0.00 3.57
766 778 3.148412 GTAGCCCAGGTAGACTAGCTAC 58.852 54.545 13.68 12.97 45.80 3.58
835 854 1.517832 CAGAATCCGGCTCCGACTT 59.482 57.895 10.28 2.60 42.83 3.01
889 951 2.799371 CGGAGTCGGAGTAGGCAC 59.201 66.667 0.00 0.00 0.00 5.01
890 952 2.799371 GGAGTCGGAGTAGGCACG 59.201 66.667 0.00 0.00 0.00 5.34
895 957 1.303888 TCGGAGTAGGCACGTCCTT 60.304 57.895 11.09 0.00 44.75 3.36
899 961 2.620115 CGGAGTAGGCACGTCCTTTATA 59.380 50.000 11.09 0.00 44.75 0.98
901 963 4.366586 GGAGTAGGCACGTCCTTTATAAC 58.633 47.826 11.09 4.46 44.75 1.89
904 968 5.173664 AGTAGGCACGTCCTTTATAACAAC 58.826 41.667 11.09 2.71 44.75 3.32
944 1014 1.781555 GAACACACATCGCGTCTGG 59.218 57.895 5.77 2.59 0.00 3.86
945 1015 0.666274 GAACACACATCGCGTCTGGA 60.666 55.000 5.77 0.00 0.00 3.86
960 1030 0.660488 CTGGACGACTCTCCTGATCG 59.340 60.000 0.00 0.00 41.60 3.69
961 1031 1.357334 GGACGACTCTCCTGATCGC 59.643 63.158 0.00 0.00 39.47 4.58
962 1032 1.010574 GACGACTCTCCTGATCGCG 60.011 63.158 0.00 0.00 39.47 5.87
963 1033 1.429927 GACGACTCTCCTGATCGCGA 61.430 60.000 13.09 13.09 39.47 5.87
964 1034 1.025113 ACGACTCTCCTGATCGCGAA 61.025 55.000 15.24 0.00 39.47 4.70
965 1035 0.316607 CGACTCTCCTGATCGCGAAG 60.317 60.000 15.24 6.91 0.00 3.79
1365 1544 1.068585 GTGTCCGGTCGTGTCCTTT 59.931 57.895 0.00 0.00 0.00 3.11
1372 1551 1.525619 CGGTCGTGTCCTTTTCTTGAC 59.474 52.381 0.00 0.00 0.00 3.18
1409 1645 0.039437 GTGTCTCTCGAGTTTCCGCA 60.039 55.000 13.13 1.94 0.00 5.69
1410 1646 0.888619 TGTCTCTCGAGTTTCCGCAT 59.111 50.000 13.13 0.00 0.00 4.73
1411 1647 1.135373 TGTCTCTCGAGTTTCCGCATC 60.135 52.381 13.13 0.00 0.00 3.91
1414 1660 2.614520 TCTCTCGAGTTTCCGCATCTAG 59.385 50.000 13.13 0.00 0.00 2.43
1416 1662 2.355132 TCTCGAGTTTCCGCATCTAGTC 59.645 50.000 13.13 0.00 0.00 2.59
1432 1678 4.113085 TCTAGTCCTCCTCTACCTCTGTT 58.887 47.826 0.00 0.00 0.00 3.16
1433 1679 3.094484 AGTCCTCCTCTACCTCTGTTG 57.906 52.381 0.00 0.00 0.00 3.33
1434 1680 1.478916 GTCCTCCTCTACCTCTGTTGC 59.521 57.143 0.00 0.00 0.00 4.17
1435 1681 1.077169 TCCTCCTCTACCTCTGTTGCA 59.923 52.381 0.00 0.00 0.00 4.08
1436 1682 1.480137 CCTCCTCTACCTCTGTTGCAG 59.520 57.143 0.00 0.00 0.00 4.41
1641 3191 1.867233 GACGCTCTGCAAGTTCAGAAA 59.133 47.619 0.00 0.00 41.99 2.52
1764 4189 9.577110 TCTCAATGCAAATTGTATTTCTGAATC 57.423 29.630 6.57 0.00 30.23 2.52
1767 4192 9.361315 CAATGCAAATTGTATTTCTGAATCTCA 57.639 29.630 6.57 0.00 30.23 3.27
1932 4382 4.015084 ACAGGCAATCTTTGGAGAAGATG 58.985 43.478 2.34 0.00 37.11 2.90
2032 4493 7.872483 ACAACCTGAATTTGGTATCATCAAAAC 59.128 33.333 4.78 0.00 37.60 2.43
2118 4644 3.976015 TGGGTTTCTGAGTTCCAAAGTT 58.024 40.909 0.00 0.00 0.00 2.66
2130 4656 3.059352 TCCAAAGTTTCTCCTAGCAGC 57.941 47.619 0.00 0.00 0.00 5.25
2135 4661 5.415701 CCAAAGTTTCTCCTAGCAGCAAATA 59.584 40.000 0.00 0.00 0.00 1.40
2136 4662 6.404074 CCAAAGTTTCTCCTAGCAGCAAATAG 60.404 42.308 0.00 0.00 0.00 1.73
2137 4663 5.428184 AGTTTCTCCTAGCAGCAAATAGT 57.572 39.130 0.00 0.00 0.00 2.12
2138 4664 6.546428 AGTTTCTCCTAGCAGCAAATAGTA 57.454 37.500 0.00 0.00 0.00 1.82
2139 4665 6.947464 AGTTTCTCCTAGCAGCAAATAGTAA 58.053 36.000 0.00 0.00 0.00 2.24
2140 4666 6.819146 AGTTTCTCCTAGCAGCAAATAGTAAC 59.181 38.462 0.00 0.00 0.00 2.50
2141 4667 5.932619 TCTCCTAGCAGCAAATAGTAACA 57.067 39.130 0.00 0.00 0.00 2.41
2142 4668 6.294361 TCTCCTAGCAGCAAATAGTAACAA 57.706 37.500 0.00 0.00 0.00 2.83
2143 4669 6.707290 TCTCCTAGCAGCAAATAGTAACAAA 58.293 36.000 0.00 0.00 0.00 2.83
2222 4748 7.907214 AGGTTTAGTGTGAATATGTGACTTC 57.093 36.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 102 9.806203 CACAATCAATCAATCAAATAAAGGCTA 57.194 29.630 0.00 0.00 0.00 3.93
107 110 6.288941 TCCTGCACAATCAATCAATCAAAT 57.711 33.333 0.00 0.00 0.00 2.32
138 149 7.665690 CAGAGTATAATCAGGAGCTAACACAT 58.334 38.462 2.62 0.00 0.00 3.21
143 154 6.731292 TTGCAGAGTATAATCAGGAGCTAA 57.269 37.500 2.62 0.00 0.00 3.09
172 183 5.389520 TGCAGAGTATAATCAGGAGCTACT 58.610 41.667 0.00 0.00 0.00 2.57
208 219 8.618702 ATGAAGGAGCAGAGTATAATCATTTG 57.381 34.615 2.62 0.00 0.00 2.32
223 234 1.895798 ACGTCTCAAGATGAAGGAGCA 59.104 47.619 6.24 0.00 35.16 4.26
237 248 2.194800 TCGATCTCAATGCACGTCTC 57.805 50.000 0.00 0.00 0.00 3.36
295 306 1.926561 TGTTGAGCAATCGATCGGAG 58.073 50.000 16.41 6.64 0.00 4.63
296 307 2.204237 CATGTTGAGCAATCGATCGGA 58.796 47.619 16.41 2.25 0.00 4.55
297 308 1.333524 GCATGTTGAGCAATCGATCGG 60.334 52.381 16.41 0.00 0.00 4.18
299 310 2.983166 CAGCATGTTGAGCAATCGATC 58.017 47.619 2.97 0.00 0.00 3.69
313 324 6.032094 GGAAAATTACTGATCACACAGCATG 58.968 40.000 0.00 0.00 46.00 4.06
314 325 5.948162 AGGAAAATTACTGATCACACAGCAT 59.052 36.000 0.00 0.00 41.06 3.79
315 326 5.316167 AGGAAAATTACTGATCACACAGCA 58.684 37.500 0.00 0.00 41.06 4.41
316 327 5.886960 AGGAAAATTACTGATCACACAGC 57.113 39.130 0.00 0.00 41.06 4.40
348 359 3.805971 CAGCATGTTGAGCATTCGATCTA 59.194 43.478 2.97 0.00 35.19 1.98
572 584 1.136695 CTCGATGCTCCTTTCTGCTCT 59.863 52.381 0.00 0.00 0.00 4.09
597 609 4.400961 AGCTCAAGGTCAGCCGCC 62.401 66.667 0.00 0.00 37.63 6.13
598 610 2.794820 AAGAGCTCAAGGTCAGCCGC 62.795 60.000 17.77 0.00 44.42 6.53
599 611 1.018226 CAAGAGCTCAAGGTCAGCCG 61.018 60.000 17.77 0.00 44.42 5.52
600 612 0.322975 TCAAGAGCTCAAGGTCAGCC 59.677 55.000 17.77 0.00 44.42 4.85
601 613 2.399916 ATCAAGAGCTCAAGGTCAGC 57.600 50.000 17.77 0.00 44.42 4.26
602 614 3.008330 CCAATCAAGAGCTCAAGGTCAG 58.992 50.000 17.77 0.00 44.42 3.51
603 615 2.639347 TCCAATCAAGAGCTCAAGGTCA 59.361 45.455 17.77 0.00 44.42 4.02
604 616 3.269178 CTCCAATCAAGAGCTCAAGGTC 58.731 50.000 17.77 0.94 42.47 3.85
605 617 2.641815 ACTCCAATCAAGAGCTCAAGGT 59.358 45.455 17.77 0.16 34.56 3.50
606 618 3.008330 CACTCCAATCAAGAGCTCAAGG 58.992 50.000 17.77 8.02 34.56 3.61
607 619 3.008330 CCACTCCAATCAAGAGCTCAAG 58.992 50.000 17.77 7.84 34.56 3.02
608 620 2.639347 TCCACTCCAATCAAGAGCTCAA 59.361 45.455 17.77 0.69 34.56 3.02
609 621 2.235650 CTCCACTCCAATCAAGAGCTCA 59.764 50.000 17.77 0.00 34.56 4.26
610 622 2.419851 CCTCCACTCCAATCAAGAGCTC 60.420 54.545 5.27 5.27 34.56 4.09
611 623 1.558756 CCTCCACTCCAATCAAGAGCT 59.441 52.381 0.00 0.00 34.56 4.09
612 624 1.407989 CCCTCCACTCCAATCAAGAGC 60.408 57.143 0.00 0.00 34.56 4.09
613 625 2.170187 CTCCCTCCACTCCAATCAAGAG 59.830 54.545 0.00 0.00 37.39 2.85
614 626 2.191400 CTCCCTCCACTCCAATCAAGA 58.809 52.381 0.00 0.00 0.00 3.02
615 627 1.211457 CCTCCCTCCACTCCAATCAAG 59.789 57.143 0.00 0.00 0.00 3.02
616 628 1.289160 CCTCCCTCCACTCCAATCAA 58.711 55.000 0.00 0.00 0.00 2.57
617 629 1.274703 GCCTCCCTCCACTCCAATCA 61.275 60.000 0.00 0.00 0.00 2.57
618 630 1.529309 GCCTCCCTCCACTCCAATC 59.471 63.158 0.00 0.00 0.00 2.67
619 631 2.370445 CGCCTCCCTCCACTCCAAT 61.370 63.158 0.00 0.00 0.00 3.16
620 632 3.003173 CGCCTCCCTCCACTCCAA 61.003 66.667 0.00 0.00 0.00 3.53
641 653 4.292178 CTCCGCAGATCCCTCGCC 62.292 72.222 0.00 0.00 0.00 5.54
642 654 2.691674 CTTCTCCGCAGATCCCTCGC 62.692 65.000 0.00 0.00 0.00 5.03
643 655 1.103987 TCTTCTCCGCAGATCCCTCG 61.104 60.000 0.00 0.00 0.00 4.63
644 656 1.068434 CTTCTTCTCCGCAGATCCCTC 59.932 57.143 0.00 0.00 0.00 4.30
645 657 1.118838 CTTCTTCTCCGCAGATCCCT 58.881 55.000 0.00 0.00 0.00 4.20
646 658 1.115467 TCTTCTTCTCCGCAGATCCC 58.885 55.000 0.00 0.00 0.00 3.85
647 659 2.820330 CTTCTTCTTCTCCGCAGATCC 58.180 52.381 0.00 0.00 0.00 3.36
648 660 2.200899 GCTTCTTCTTCTCCGCAGATC 58.799 52.381 0.00 0.00 0.00 2.75
649 661 1.470632 CGCTTCTTCTTCTCCGCAGAT 60.471 52.381 0.00 0.00 0.00 2.90
650 662 0.109086 CGCTTCTTCTTCTCCGCAGA 60.109 55.000 0.00 0.00 0.00 4.26
651 663 0.389166 ACGCTTCTTCTTCTCCGCAG 60.389 55.000 0.00 0.00 0.00 5.18
652 664 0.885879 TACGCTTCTTCTTCTCCGCA 59.114 50.000 0.00 0.00 0.00 5.69
653 665 1.135344 ACTACGCTTCTTCTTCTCCGC 60.135 52.381 0.00 0.00 0.00 5.54
654 666 2.923605 ACTACGCTTCTTCTTCTCCG 57.076 50.000 0.00 0.00 0.00 4.63
655 667 4.389382 GGAAAACTACGCTTCTTCTTCTCC 59.611 45.833 0.00 0.00 0.00 3.71
656 668 4.389382 GGGAAAACTACGCTTCTTCTTCTC 59.611 45.833 0.00 0.00 0.00 2.87
657 669 4.316645 GGGAAAACTACGCTTCTTCTTCT 58.683 43.478 0.00 0.00 0.00 2.85
658 670 3.123116 CGGGAAAACTACGCTTCTTCTTC 59.877 47.826 0.00 0.00 0.00 2.87
659 671 3.064931 CGGGAAAACTACGCTTCTTCTT 58.935 45.455 0.00 0.00 0.00 2.52
660 672 2.685100 CGGGAAAACTACGCTTCTTCT 58.315 47.619 0.00 0.00 0.00 2.85
668 680 3.249080 TCTTTTCTTGCGGGAAAACTACG 59.751 43.478 11.04 4.48 39.37 3.51
669 681 4.823790 TCTTTTCTTGCGGGAAAACTAC 57.176 40.909 11.04 0.00 39.37 2.73
670 682 5.221165 CCTTTCTTTTCTTGCGGGAAAACTA 60.221 40.000 11.04 2.90 39.37 2.24
671 683 4.441495 CCTTTCTTTTCTTGCGGGAAAACT 60.441 41.667 11.04 0.00 39.37 2.66
672 684 3.802139 CCTTTCTTTTCTTGCGGGAAAAC 59.198 43.478 11.04 0.00 39.37 2.43
673 685 3.702045 TCCTTTCTTTTCTTGCGGGAAAA 59.298 39.130 13.41 13.41 41.17 2.29
674 686 3.292460 TCCTTTCTTTTCTTGCGGGAAA 58.708 40.909 0.67 0.67 33.98 3.13
675 687 2.938838 TCCTTTCTTTTCTTGCGGGAA 58.061 42.857 0.00 0.00 0.00 3.97
676 688 2.649531 TCCTTTCTTTTCTTGCGGGA 57.350 45.000 0.00 0.00 0.00 5.14
677 689 3.726291 TTTCCTTTCTTTTCTTGCGGG 57.274 42.857 0.00 0.00 0.00 6.13
698 710 3.892588 TCAGCGGTGGGAAAACTATTTTT 59.107 39.130 15.67 0.00 37.65 1.94
699 711 3.254903 GTCAGCGGTGGGAAAACTATTTT 59.745 43.478 15.67 0.00 35.12 1.82
700 712 2.817844 GTCAGCGGTGGGAAAACTATTT 59.182 45.455 15.67 0.00 0.00 1.40
701 713 2.224670 TGTCAGCGGTGGGAAAACTATT 60.225 45.455 15.67 0.00 0.00 1.73
702 714 1.349688 TGTCAGCGGTGGGAAAACTAT 59.650 47.619 15.67 0.00 0.00 2.12
703 715 0.759959 TGTCAGCGGTGGGAAAACTA 59.240 50.000 15.67 0.00 0.00 2.24
704 716 0.535102 CTGTCAGCGGTGGGAAAACT 60.535 55.000 15.67 0.00 0.00 2.66
705 717 0.818040 ACTGTCAGCGGTGGGAAAAC 60.818 55.000 15.67 5.58 31.98 2.43
706 718 0.759959 TACTGTCAGCGGTGGGAAAA 59.240 50.000 15.67 0.00 35.51 2.29
707 719 0.034337 GTACTGTCAGCGGTGGGAAA 59.966 55.000 15.67 0.00 35.51 3.13
708 720 1.669440 GTACTGTCAGCGGTGGGAA 59.331 57.895 15.67 0.00 35.51 3.97
709 721 2.632544 CGTACTGTCAGCGGTGGGA 61.633 63.158 15.67 0.31 35.51 4.37
710 722 2.126071 CGTACTGTCAGCGGTGGG 60.126 66.667 15.67 8.06 35.51 4.61
711 723 1.733041 CACGTACTGTCAGCGGTGG 60.733 63.158 15.67 0.85 35.51 4.61
712 724 2.372690 GCACGTACTGTCAGCGGTG 61.373 63.158 8.67 8.67 35.51 4.94
713 725 2.049433 GCACGTACTGTCAGCGGT 60.049 61.111 0.00 0.00 37.98 5.68
714 726 2.809601 GGCACGTACTGTCAGCGG 60.810 66.667 0.00 0.00 0.00 5.52
715 727 2.809601 GGGCACGTACTGTCAGCG 60.810 66.667 0.00 0.00 0.00 5.18
716 728 1.738099 CTGGGCACGTACTGTCAGC 60.738 63.158 0.00 0.00 0.00 4.26
717 729 1.738099 GCTGGGCACGTACTGTCAG 60.738 63.158 0.00 0.00 0.00 3.51
718 730 2.342279 GCTGGGCACGTACTGTCA 59.658 61.111 0.00 0.00 0.00 3.58
719 731 2.434359 GGCTGGGCACGTACTGTC 60.434 66.667 0.00 0.00 0.00 3.51
720 732 3.238497 TGGCTGGGCACGTACTGT 61.238 61.111 0.00 0.00 0.00 3.55
721 733 2.434884 CTGGCTGGGCACGTACTG 60.435 66.667 0.00 0.00 0.00 2.74
722 734 4.394712 GCTGGCTGGGCACGTACT 62.395 66.667 0.00 0.00 0.00 2.73
723 735 4.697756 TGCTGGCTGGGCACGTAC 62.698 66.667 0.00 0.00 34.56 3.67
724 736 3.266686 ATTGCTGGCTGGGCACGTA 62.267 57.895 0.00 0.00 39.55 3.57
725 737 4.666253 ATTGCTGGCTGGGCACGT 62.666 61.111 0.00 0.00 39.55 4.49
726 738 4.124351 CATTGCTGGCTGGGCACG 62.124 66.667 0.00 0.00 39.55 5.34
727 739 4.446413 GCATTGCTGGCTGGGCAC 62.446 66.667 0.16 0.00 39.55 5.01
766 778 3.227276 CCGGGAGATGACGGGAGG 61.227 72.222 0.00 0.00 46.08 4.30
835 854 1.268352 GGTGCAACGAAGCCATTAACA 59.732 47.619 0.00 0.00 38.12 2.41
889 951 3.437741 GGGTGTGGTTGTTATAAAGGACG 59.562 47.826 0.00 0.00 0.00 4.79
890 952 4.400120 TGGGTGTGGTTGTTATAAAGGAC 58.600 43.478 0.00 0.00 0.00 3.85
895 957 2.553172 GCGTTGGGTGTGGTTGTTATAA 59.447 45.455 0.00 0.00 0.00 0.98
899 961 0.968393 AAGCGTTGGGTGTGGTTGTT 60.968 50.000 0.00 0.00 0.00 2.83
901 963 0.248866 GAAAGCGTTGGGTGTGGTTG 60.249 55.000 0.00 0.00 0.00 3.77
904 968 2.561037 GGGAAAGCGTTGGGTGTGG 61.561 63.158 0.00 0.00 0.00 4.17
944 1014 1.010574 CGCGATCAGGAGAGTCGTC 60.011 63.158 0.00 0.00 37.66 4.20
945 1015 1.025113 TTCGCGATCAGGAGAGTCGT 61.025 55.000 10.88 0.00 37.66 4.34
1343 1513 1.080974 GACACGACCGGACACGATT 60.081 57.895 21.66 10.99 44.60 3.34
1345 1515 3.663176 GGACACGACCGGACACGA 61.663 66.667 21.66 0.00 44.60 4.35
1346 1516 2.688526 AAAGGACACGACCGGACACG 62.689 60.000 9.46 13.68 40.55 4.49
1347 1517 0.531311 AAAAGGACACGACCGGACAC 60.531 55.000 9.46 0.00 34.73 3.67
1348 1518 0.249573 GAAAAGGACACGACCGGACA 60.250 55.000 9.46 0.00 34.73 4.02
1349 1519 0.033090 AGAAAAGGACACGACCGGAC 59.967 55.000 9.46 0.00 34.73 4.79
1350 1520 0.754472 AAGAAAAGGACACGACCGGA 59.246 50.000 9.46 0.00 34.73 5.14
1351 1521 0.865769 CAAGAAAAGGACACGACCGG 59.134 55.000 0.00 0.00 34.73 5.28
1352 1522 1.525619 GTCAAGAAAAGGACACGACCG 59.474 52.381 0.00 0.00 34.22 4.79
1353 1523 2.835027 AGTCAAGAAAAGGACACGACC 58.165 47.619 0.00 0.00 36.50 4.79
1354 1524 4.618965 ACTAGTCAAGAAAAGGACACGAC 58.381 43.478 0.00 0.00 36.50 4.34
1365 1544 7.441157 ACGATCAAACATCAAACTAGTCAAGAA 59.559 33.333 0.00 0.00 0.00 2.52
1372 1551 6.587990 AGAGACACGATCAAACATCAAACTAG 59.412 38.462 0.00 0.00 0.00 2.57
1409 1645 4.312487 ACAGAGGTAGAGGAGGACTAGAT 58.688 47.826 0.00 0.00 0.00 1.98
1410 1646 3.738434 ACAGAGGTAGAGGAGGACTAGA 58.262 50.000 0.00 0.00 0.00 2.43
1411 1647 4.204012 CAACAGAGGTAGAGGAGGACTAG 58.796 52.174 0.00 0.00 0.00 2.57
1414 1660 1.478916 GCAACAGAGGTAGAGGAGGAC 59.521 57.143 0.00 0.00 0.00 3.85
1416 1662 1.480137 CTGCAACAGAGGTAGAGGAGG 59.520 57.143 0.00 0.00 32.44 4.30
1435 1681 0.388649 GCTACACAGTACGCAGCACT 60.389 55.000 0.00 0.00 32.46 4.40
1436 1682 0.388649 AGCTACACAGTACGCAGCAC 60.389 55.000 0.00 0.00 34.65 4.40
1602 3120 1.673920 TCTTTGTTCTTGAACGGTGCC 59.326 47.619 8.68 0.00 0.00 5.01
1641 3191 1.598130 GTCTGCTTCGCCCTTGTGT 60.598 57.895 0.00 0.00 0.00 3.72
1942 4394 8.806429 TGTCCAATACAGTGATGACATTTAAT 57.194 30.769 0.00 0.00 33.01 1.40
1949 4401 6.546395 GTCAATTGTCCAATACAGTGATGAC 58.454 40.000 5.13 0.00 39.87 3.06
1966 4427 3.885484 AGCTGTCTTGTTCGTCAATTG 57.115 42.857 0.00 0.00 35.35 2.32
2032 4493 5.888105 CAGATTTCTGGCTGATTTAGGTTG 58.112 41.667 0.00 0.00 40.20 3.77
2118 4644 6.294361 TGTTACTATTTGCTGCTAGGAGAA 57.706 37.500 16.44 0.15 0.00 2.87
2139 4665 9.956640 TGCAGATAATTAAATTTTCCCATTTGT 57.043 25.926 0.00 0.00 0.00 2.83
2141 4667 9.394767 GGTGCAGATAATTAAATTTTCCCATTT 57.605 29.630 0.00 0.00 0.00 2.32
2142 4668 8.547173 TGGTGCAGATAATTAAATTTTCCCATT 58.453 29.630 0.00 0.00 0.00 3.16
2143 4669 8.088463 TGGTGCAGATAATTAAATTTTCCCAT 57.912 30.769 0.00 0.00 0.00 4.00
2222 4748 5.016173 TGTTGGGGGAGAAAATCATTACTG 58.984 41.667 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.