Multiple sequence alignment - TraesCS1D01G440700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G440700 chr1D 100.000 2512 0 0 869 3380 486116061 486118572 0 4639
1 TraesCS1D01G440700 chr1D 84.792 2525 352 19 873 3380 19341173 19343682 0 2507
2 TraesCS1D01G440700 chr1D 100.000 486 0 0 1 486 486115193 486115678 0 898
3 TraesCS1D01G440700 chr1B 88.038 2508 279 10 873 3373 676810081 676812574 0 2950
4 TraesCS1D01G440700 chr1B 87.267 2521 289 18 873 3380 676949811 676952312 0 2848
5 TraesCS1D01G440700 chr1B 86.820 2519 304 18 873 3380 676851819 676854320 0 2787
6 TraesCS1D01G440700 chr1B 84.822 2385 347 10 993 3371 29823975 29826350 0 2385
7 TraesCS1D01G440700 chr1B 83.776 2410 362 18 993 3380 29898388 29900790 0 2257
8 TraesCS1D01G440700 chr1B 83.464 1536 238 14 1836 3364 29085866 29087392 0 1415
9 TraesCS1D01G440700 chrUn 83.859 2441 373 19 950 3380 116819362 116821791 0 2305
10 TraesCS1D01G440700 chrUn 83.849 2328 339 23 1079 3380 180337352 180339668 0 2182
11 TraesCS1D01G440700 chr1A 83.664 1359 200 11 873 2218 21075516 21076865 0 1260
12 TraesCS1D01G440700 chr1A 82.517 1184 182 15 2220 3380 21076955 21078136 0 1016


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G440700 chr1D 486115193 486118572 3379 False 2768.5 4639 100.0000 1 3380 2 chr1D.!!$F2 3379
1 TraesCS1D01G440700 chr1D 19341173 19343682 2509 False 2507.0 2507 84.7920 873 3380 1 chr1D.!!$F1 2507
2 TraesCS1D01G440700 chr1B 676810081 676812574 2493 False 2950.0 2950 88.0380 873 3373 1 chr1B.!!$F4 2500
3 TraesCS1D01G440700 chr1B 676949811 676952312 2501 False 2848.0 2848 87.2670 873 3380 1 chr1B.!!$F6 2507
4 TraesCS1D01G440700 chr1B 676851819 676854320 2501 False 2787.0 2787 86.8200 873 3380 1 chr1B.!!$F5 2507
5 TraesCS1D01G440700 chr1B 29823975 29826350 2375 False 2385.0 2385 84.8220 993 3371 1 chr1B.!!$F2 2378
6 TraesCS1D01G440700 chr1B 29898388 29900790 2402 False 2257.0 2257 83.7760 993 3380 1 chr1B.!!$F3 2387
7 TraesCS1D01G440700 chr1B 29085866 29087392 1526 False 1415.0 1415 83.4640 1836 3364 1 chr1B.!!$F1 1528
8 TraesCS1D01G440700 chrUn 116819362 116821791 2429 False 2305.0 2305 83.8590 950 3380 1 chrUn.!!$F1 2430
9 TraesCS1D01G440700 chrUn 180337352 180339668 2316 False 2182.0 2182 83.8490 1079 3380 1 chrUn.!!$F2 2301
10 TraesCS1D01G440700 chr1A 21075516 21078136 2620 False 1138.0 1260 83.0905 873 3380 2 chr1A.!!$F1 2507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
382 383 0.035317 AGCACAATCGAGTGAGCCAA 59.965 50.0 27.21 0.0 42.05 4.52 F
1062 1093 0.977395 ACAAGGTGTCCAGCTACCTC 59.023 55.0 6.37 0.0 46.28 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1754 1788 0.238289 CAATGCCTTGTCACGGTCAC 59.762 55.0 0.00 0.00 0.0 3.67 R
2772 2923 0.313987 GGTGTTGTAAGTGCCTTGGC 59.686 55.0 4.43 4.43 0.0 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.964958 ACTTCTCACATGGTAAATTGGTG 57.035 39.130 0.00 0.00 0.00 4.17
24 25 5.630121 ACTTCTCACATGGTAAATTGGTGA 58.370 37.500 0.00 0.00 37.02 4.02
25 26 6.248433 ACTTCTCACATGGTAAATTGGTGAT 58.752 36.000 0.00 0.00 37.79 3.06
26 27 6.151648 ACTTCTCACATGGTAAATTGGTGATG 59.848 38.462 0.00 0.00 37.79 3.07
27 28 5.814481 TCTCACATGGTAAATTGGTGATGA 58.186 37.500 0.00 0.00 37.79 2.92
28 29 6.425735 TCTCACATGGTAAATTGGTGATGAT 58.574 36.000 0.00 0.00 37.79 2.45
29 30 6.319405 TCTCACATGGTAAATTGGTGATGATG 59.681 38.462 0.00 0.00 37.79 3.07
30 31 5.951148 TCACATGGTAAATTGGTGATGATGT 59.049 36.000 0.00 0.00 33.88 3.06
31 32 7.115414 TCACATGGTAAATTGGTGATGATGTA 58.885 34.615 0.00 0.00 33.88 2.29
32 33 7.066887 TCACATGGTAAATTGGTGATGATGTAC 59.933 37.037 0.00 0.00 33.88 2.90
33 34 6.321181 ACATGGTAAATTGGTGATGATGTACC 59.679 38.462 0.00 0.00 37.48 3.34
34 35 6.073447 TGGTAAATTGGTGATGATGTACCT 57.927 37.500 4.78 0.00 37.84 3.08
35 36 6.489603 TGGTAAATTGGTGATGATGTACCTT 58.510 36.000 4.78 0.00 37.84 3.50
36 37 7.634718 TGGTAAATTGGTGATGATGTACCTTA 58.365 34.615 4.78 0.00 37.84 2.69
37 38 8.278639 TGGTAAATTGGTGATGATGTACCTTAT 58.721 33.333 4.78 0.00 37.84 1.73
38 39 9.131791 GGTAAATTGGTGATGATGTACCTTATT 57.868 33.333 0.00 0.00 37.84 1.40
39 40 9.950680 GTAAATTGGTGATGATGTACCTTATTG 57.049 33.333 0.00 0.00 37.84 1.90
40 41 8.593945 AAATTGGTGATGATGTACCTTATTGT 57.406 30.769 0.00 0.00 37.84 2.71
41 42 7.807977 ATTGGTGATGATGTACCTTATTGTC 57.192 36.000 0.00 0.00 37.84 3.18
42 43 6.560003 TGGTGATGATGTACCTTATTGTCT 57.440 37.500 0.00 0.00 37.84 3.41
43 44 6.957631 TGGTGATGATGTACCTTATTGTCTT 58.042 36.000 0.00 0.00 37.84 3.01
44 45 6.823182 TGGTGATGATGTACCTTATTGTCTTG 59.177 38.462 0.00 0.00 37.84 3.02
45 46 7.047891 GGTGATGATGTACCTTATTGTCTTGA 58.952 38.462 0.00 0.00 34.11 3.02
46 47 7.225538 GGTGATGATGTACCTTATTGTCTTGAG 59.774 40.741 0.00 0.00 34.11 3.02
47 48 7.981789 GTGATGATGTACCTTATTGTCTTGAGA 59.018 37.037 0.00 0.00 0.00 3.27
48 49 8.708378 TGATGATGTACCTTATTGTCTTGAGAT 58.292 33.333 0.00 0.00 0.00 2.75
49 50 9.202273 GATGATGTACCTTATTGTCTTGAGATC 57.798 37.037 0.00 0.00 0.00 2.75
50 51 8.311395 TGATGTACCTTATTGTCTTGAGATCT 57.689 34.615 0.00 0.00 0.00 2.75
51 52 8.417106 TGATGTACCTTATTGTCTTGAGATCTC 58.583 37.037 16.21 16.21 0.00 2.75
52 53 6.796426 TGTACCTTATTGTCTTGAGATCTCG 58.204 40.000 17.76 4.81 0.00 4.04
53 54 6.602009 TGTACCTTATTGTCTTGAGATCTCGA 59.398 38.462 17.76 15.02 0.00 4.04
54 55 6.723298 ACCTTATTGTCTTGAGATCTCGAT 57.277 37.500 17.76 3.44 0.00 3.59
55 56 6.744112 ACCTTATTGTCTTGAGATCTCGATC 58.256 40.000 17.76 12.00 38.09 3.69
67 68 5.850557 AGATCTCGATCTCACAGACAAAT 57.149 39.130 3.63 0.00 44.37 2.32
68 69 5.830912 AGATCTCGATCTCACAGACAAATC 58.169 41.667 3.63 0.00 44.37 2.17
69 70 5.359292 AGATCTCGATCTCACAGACAAATCA 59.641 40.000 3.63 0.00 44.37 2.57
70 71 5.588958 TCTCGATCTCACAGACAAATCAT 57.411 39.130 0.00 0.00 0.00 2.45
71 72 6.699575 TCTCGATCTCACAGACAAATCATA 57.300 37.500 0.00 0.00 0.00 2.15
72 73 6.499172 TCTCGATCTCACAGACAAATCATAC 58.501 40.000 0.00 0.00 0.00 2.39
73 74 5.592054 TCGATCTCACAGACAAATCATACC 58.408 41.667 0.00 0.00 0.00 2.73
74 75 4.442403 CGATCTCACAGACAAATCATACCG 59.558 45.833 0.00 0.00 0.00 4.02
75 76 3.521560 TCTCACAGACAAATCATACCGC 58.478 45.455 0.00 0.00 0.00 5.68
76 77 3.195610 TCTCACAGACAAATCATACCGCT 59.804 43.478 0.00 0.00 0.00 5.52
77 78 3.261580 TCACAGACAAATCATACCGCTG 58.738 45.455 0.00 0.00 0.00 5.18
78 79 3.056179 TCACAGACAAATCATACCGCTGA 60.056 43.478 0.00 0.00 0.00 4.26
79 80 3.873361 CACAGACAAATCATACCGCTGAT 59.127 43.478 0.00 0.00 37.47 2.90
80 81 3.873361 ACAGACAAATCATACCGCTGATG 59.127 43.478 0.00 0.00 36.03 3.07
81 82 4.122046 CAGACAAATCATACCGCTGATGA 58.878 43.478 0.00 0.00 36.03 2.92
82 83 4.571984 CAGACAAATCATACCGCTGATGAA 59.428 41.667 0.00 0.00 36.90 2.57
83 84 5.065090 CAGACAAATCATACCGCTGATGAAA 59.935 40.000 0.00 0.00 36.90 2.69
84 85 5.065218 AGACAAATCATACCGCTGATGAAAC 59.935 40.000 0.00 0.00 36.90 2.78
85 86 4.699735 ACAAATCATACCGCTGATGAAACA 59.300 37.500 0.00 0.00 36.90 2.83
86 87 5.182950 ACAAATCATACCGCTGATGAAACAA 59.817 36.000 0.00 0.00 36.90 2.83
87 88 5.895636 AATCATACCGCTGATGAAACAAA 57.104 34.783 0.00 0.00 36.90 2.83
88 89 5.895636 ATCATACCGCTGATGAAACAAAA 57.104 34.783 0.00 0.00 36.90 2.44
89 90 5.697473 TCATACCGCTGATGAAACAAAAA 57.303 34.783 0.00 0.00 30.35 1.94
90 91 6.266168 TCATACCGCTGATGAAACAAAAAT 57.734 33.333 0.00 0.00 30.35 1.82
91 92 6.686630 TCATACCGCTGATGAAACAAAAATT 58.313 32.000 0.00 0.00 30.35 1.82
92 93 7.821652 TCATACCGCTGATGAAACAAAAATTA 58.178 30.769 0.00 0.00 30.35 1.40
93 94 8.465999 TCATACCGCTGATGAAACAAAAATTAT 58.534 29.630 0.00 0.00 30.35 1.28
94 95 8.745837 CATACCGCTGATGAAACAAAAATTATC 58.254 33.333 0.00 0.00 0.00 1.75
95 96 6.924111 ACCGCTGATGAAACAAAAATTATCT 58.076 32.000 0.00 0.00 0.00 1.98
96 97 8.050778 ACCGCTGATGAAACAAAAATTATCTA 57.949 30.769 0.00 0.00 0.00 1.98
97 98 8.519526 ACCGCTGATGAAACAAAAATTATCTAA 58.480 29.630 0.00 0.00 0.00 2.10
98 99 9.352784 CCGCTGATGAAACAAAAATTATCTAAA 57.647 29.630 0.00 0.00 0.00 1.85
144 145 9.567776 TCAAATTAGACACCTCTTAAAACATGA 57.432 29.630 0.00 0.00 0.00 3.07
145 146 9.612620 CAAATTAGACACCTCTTAAAACATGAC 57.387 33.333 0.00 0.00 0.00 3.06
146 147 8.918202 AATTAGACACCTCTTAAAACATGACA 57.082 30.769 0.00 0.00 0.00 3.58
147 148 7.724305 TTAGACACCTCTTAAAACATGACAC 57.276 36.000 0.00 0.00 0.00 3.67
148 149 5.680619 AGACACCTCTTAAAACATGACACA 58.319 37.500 0.00 0.00 0.00 3.72
149 150 5.527582 AGACACCTCTTAAAACATGACACAC 59.472 40.000 0.00 0.00 0.00 3.82
150 151 4.272504 ACACCTCTTAAAACATGACACACG 59.727 41.667 0.00 0.00 0.00 4.49
151 152 3.813166 ACCTCTTAAAACATGACACACGG 59.187 43.478 0.00 0.00 0.00 4.94
152 153 3.364964 CCTCTTAAAACATGACACACGGC 60.365 47.826 0.00 0.00 0.00 5.68
153 154 3.206964 TCTTAAAACATGACACACGGCA 58.793 40.909 0.00 0.00 0.00 5.69
154 155 3.628032 TCTTAAAACATGACACACGGCAA 59.372 39.130 0.00 0.00 0.00 4.52
155 156 4.277174 TCTTAAAACATGACACACGGCAAT 59.723 37.500 0.00 0.00 0.00 3.56
156 157 5.470437 TCTTAAAACATGACACACGGCAATA 59.530 36.000 0.00 0.00 0.00 1.90
157 158 3.552604 AAACATGACACACGGCAATAC 57.447 42.857 0.00 0.00 0.00 1.89
158 159 1.448985 ACATGACACACGGCAATACC 58.551 50.000 0.00 0.00 0.00 2.73
159 160 1.271108 ACATGACACACGGCAATACCA 60.271 47.619 0.00 0.00 39.03 3.25
160 161 1.809547 CATGACACACGGCAATACCAA 59.190 47.619 0.00 0.00 39.03 3.67
161 162 2.192664 TGACACACGGCAATACCAAT 57.807 45.000 0.00 0.00 39.03 3.16
162 163 2.080693 TGACACACGGCAATACCAATC 58.919 47.619 0.00 0.00 39.03 2.67
163 164 2.290008 TGACACACGGCAATACCAATCT 60.290 45.455 0.00 0.00 39.03 2.40
164 165 2.351726 GACACACGGCAATACCAATCTC 59.648 50.000 0.00 0.00 39.03 2.75
165 166 2.290008 ACACACGGCAATACCAATCTCA 60.290 45.455 0.00 0.00 39.03 3.27
166 167 2.746904 CACACGGCAATACCAATCTCAA 59.253 45.455 0.00 0.00 39.03 3.02
167 168 3.190327 CACACGGCAATACCAATCTCAAA 59.810 43.478 0.00 0.00 39.03 2.69
168 169 3.440173 ACACGGCAATACCAATCTCAAAG 59.560 43.478 0.00 0.00 39.03 2.77
169 170 3.440173 CACGGCAATACCAATCTCAAAGT 59.560 43.478 0.00 0.00 39.03 2.66
170 171 4.634004 CACGGCAATACCAATCTCAAAGTA 59.366 41.667 0.00 0.00 39.03 2.24
171 172 4.634443 ACGGCAATACCAATCTCAAAGTAC 59.366 41.667 0.00 0.00 39.03 2.73
172 173 4.876107 CGGCAATACCAATCTCAAAGTACT 59.124 41.667 0.00 0.00 39.03 2.73
173 174 5.354234 CGGCAATACCAATCTCAAAGTACTT 59.646 40.000 1.12 1.12 39.03 2.24
174 175 6.537301 CGGCAATACCAATCTCAAAGTACTTA 59.463 38.462 8.92 0.00 39.03 2.24
175 176 7.226720 CGGCAATACCAATCTCAAAGTACTTAT 59.773 37.037 8.92 0.00 39.03 1.73
176 177 8.560374 GGCAATACCAATCTCAAAGTACTTATC 58.440 37.037 8.92 0.00 38.86 1.75
177 178 9.331282 GCAATACCAATCTCAAAGTACTTATCT 57.669 33.333 8.92 0.00 0.00 1.98
203 204 9.860898 TCTTAACGTTATCTTAAGTCTTAACCC 57.139 33.333 9.18 0.00 34.23 4.11
204 205 9.643693 CTTAACGTTATCTTAAGTCTTAACCCA 57.356 33.333 9.18 0.00 0.00 4.51
206 207 8.713737 AACGTTATCTTAAGTCTTAACCCATC 57.286 34.615 0.00 0.00 0.00 3.51
207 208 8.075761 ACGTTATCTTAAGTCTTAACCCATCT 57.924 34.615 1.63 0.00 0.00 2.90
208 209 7.980099 ACGTTATCTTAAGTCTTAACCCATCTG 59.020 37.037 1.63 0.00 0.00 2.90
209 210 7.042658 CGTTATCTTAAGTCTTAACCCATCTGC 60.043 40.741 1.63 0.00 0.00 4.26
210 211 6.567602 ATCTTAAGTCTTAACCCATCTGCT 57.432 37.500 1.63 0.00 0.00 4.24
211 212 5.978814 TCTTAAGTCTTAACCCATCTGCTC 58.021 41.667 1.63 0.00 0.00 4.26
212 213 3.636153 AAGTCTTAACCCATCTGCTCC 57.364 47.619 0.00 0.00 0.00 4.70
213 214 2.839228 AGTCTTAACCCATCTGCTCCT 58.161 47.619 0.00 0.00 0.00 3.69
214 215 2.769095 AGTCTTAACCCATCTGCTCCTC 59.231 50.000 0.00 0.00 0.00 3.71
215 216 2.769095 GTCTTAACCCATCTGCTCCTCT 59.231 50.000 0.00 0.00 0.00 3.69
216 217 3.198853 GTCTTAACCCATCTGCTCCTCTT 59.801 47.826 0.00 0.00 0.00 2.85
217 218 3.452627 TCTTAACCCATCTGCTCCTCTTC 59.547 47.826 0.00 0.00 0.00 2.87
218 219 1.963985 AACCCATCTGCTCCTCTTCT 58.036 50.000 0.00 0.00 0.00 2.85
219 220 2.856760 ACCCATCTGCTCCTCTTCTA 57.143 50.000 0.00 0.00 0.00 2.10
220 221 2.393646 ACCCATCTGCTCCTCTTCTAC 58.606 52.381 0.00 0.00 0.00 2.59
221 222 2.023501 ACCCATCTGCTCCTCTTCTACT 60.024 50.000 0.00 0.00 0.00 2.57
222 223 3.037549 CCCATCTGCTCCTCTTCTACTT 58.962 50.000 0.00 0.00 0.00 2.24
223 224 3.069443 CCCATCTGCTCCTCTTCTACTTC 59.931 52.174 0.00 0.00 0.00 3.01
224 225 3.069443 CCATCTGCTCCTCTTCTACTTCC 59.931 52.174 0.00 0.00 0.00 3.46
225 226 2.741145 TCTGCTCCTCTTCTACTTCCC 58.259 52.381 0.00 0.00 0.00 3.97
226 227 2.043115 TCTGCTCCTCTTCTACTTCCCA 59.957 50.000 0.00 0.00 0.00 4.37
227 228 2.834549 CTGCTCCTCTTCTACTTCCCAA 59.165 50.000 0.00 0.00 0.00 4.12
228 229 3.454082 CTGCTCCTCTTCTACTTCCCAAT 59.546 47.826 0.00 0.00 0.00 3.16
229 230 3.198635 TGCTCCTCTTCTACTTCCCAATG 59.801 47.826 0.00 0.00 0.00 2.82
230 231 3.452627 GCTCCTCTTCTACTTCCCAATGA 59.547 47.826 0.00 0.00 0.00 2.57
231 232 4.102367 GCTCCTCTTCTACTTCCCAATGAT 59.898 45.833 0.00 0.00 0.00 2.45
232 233 5.397334 GCTCCTCTTCTACTTCCCAATGATT 60.397 44.000 0.00 0.00 0.00 2.57
233 234 6.240549 TCCTCTTCTACTTCCCAATGATTC 57.759 41.667 0.00 0.00 0.00 2.52
234 235 5.131142 TCCTCTTCTACTTCCCAATGATTCC 59.869 44.000 0.00 0.00 0.00 3.01
235 236 5.104360 CCTCTTCTACTTCCCAATGATTCCA 60.104 44.000 0.00 0.00 0.00 3.53
236 237 6.410157 CCTCTTCTACTTCCCAATGATTCCAT 60.410 42.308 0.00 0.00 33.66 3.41
237 238 6.973642 TCTTCTACTTCCCAATGATTCCATT 58.026 36.000 0.00 0.00 43.37 3.16
238 239 8.101309 TCTTCTACTTCCCAATGATTCCATTA 57.899 34.615 0.00 0.00 40.81 1.90
239 240 8.556589 TCTTCTACTTCCCAATGATTCCATTAA 58.443 33.333 0.00 0.00 40.81 1.40
240 241 9.359653 CTTCTACTTCCCAATGATTCCATTAAT 57.640 33.333 0.00 0.00 40.81 1.40
241 242 8.696043 TCTACTTCCCAATGATTCCATTAATG 57.304 34.615 8.58 8.58 40.81 1.90
242 243 8.501904 TCTACTTCCCAATGATTCCATTAATGA 58.498 33.333 17.23 0.00 40.81 2.57
243 244 7.592885 ACTTCCCAATGATTCCATTAATGAG 57.407 36.000 17.23 7.24 40.81 2.90
244 245 6.041296 ACTTCCCAATGATTCCATTAATGAGC 59.959 38.462 17.23 1.23 40.81 4.26
245 246 5.456779 TCCCAATGATTCCATTAATGAGCA 58.543 37.500 17.23 7.26 40.81 4.26
246 247 5.537295 TCCCAATGATTCCATTAATGAGCAG 59.463 40.000 17.23 0.08 40.81 4.24
247 248 5.303589 CCCAATGATTCCATTAATGAGCAGT 59.696 40.000 17.23 3.38 40.81 4.40
248 249 6.491062 CCCAATGATTCCATTAATGAGCAGTA 59.509 38.462 17.23 0.00 40.81 2.74
249 250 7.365741 CCAATGATTCCATTAATGAGCAGTAC 58.634 38.462 17.23 2.79 40.81 2.73
250 251 7.013559 CCAATGATTCCATTAATGAGCAGTACA 59.986 37.037 17.23 7.76 40.81 2.90
251 252 6.925610 TGATTCCATTAATGAGCAGTACAC 57.074 37.500 17.23 0.08 0.00 2.90
252 253 6.413892 TGATTCCATTAATGAGCAGTACACA 58.586 36.000 17.23 2.39 0.00 3.72
253 254 6.539826 TGATTCCATTAATGAGCAGTACACAG 59.460 38.462 17.23 0.00 0.00 3.66
254 255 4.191544 TCCATTAATGAGCAGTACACAGC 58.808 43.478 17.23 0.00 0.00 4.40
255 256 4.080919 TCCATTAATGAGCAGTACACAGCT 60.081 41.667 17.23 7.13 41.57 4.24
256 257 4.637534 CCATTAATGAGCAGTACACAGCTT 59.362 41.667 17.23 0.00 38.88 3.74
257 258 5.448225 CCATTAATGAGCAGTACACAGCTTG 60.448 44.000 17.23 3.14 38.88 4.01
258 259 2.847327 ATGAGCAGTACACAGCTTGT 57.153 45.000 8.57 6.74 38.88 3.16
275 276 4.635223 GCTTGTGCTATATGAGTCCATGA 58.365 43.478 0.00 0.00 33.73 3.07
276 277 4.450419 GCTTGTGCTATATGAGTCCATGAC 59.550 45.833 0.00 0.00 33.73 3.06
277 278 5.741383 GCTTGTGCTATATGAGTCCATGACT 60.741 44.000 0.00 0.00 39.92 3.41
278 279 5.876651 TGTGCTATATGAGTCCATGACTT 57.123 39.130 0.00 0.00 43.53 3.01
279 280 5.847304 TGTGCTATATGAGTCCATGACTTC 58.153 41.667 0.00 0.00 43.53 3.01
280 281 5.363580 TGTGCTATATGAGTCCATGACTTCA 59.636 40.000 0.00 0.00 43.53 3.02
281 282 5.925397 GTGCTATATGAGTCCATGACTTCAG 59.075 44.000 0.00 0.00 43.53 3.02
282 283 5.600069 TGCTATATGAGTCCATGACTTCAGT 59.400 40.000 0.00 0.00 43.53 3.41
283 284 5.925397 GCTATATGAGTCCATGACTTCAGTG 59.075 44.000 0.00 0.00 43.53 3.66
284 285 3.623906 ATGAGTCCATGACTTCAGTGG 57.376 47.619 0.00 0.00 43.53 4.00
285 286 1.625315 TGAGTCCATGACTTCAGTGGG 59.375 52.381 0.00 0.00 43.53 4.61
286 287 1.902508 GAGTCCATGACTTCAGTGGGA 59.097 52.381 0.00 0.00 43.53 4.37
287 288 2.303022 GAGTCCATGACTTCAGTGGGAA 59.697 50.000 0.00 0.00 43.53 3.97
288 289 2.711009 AGTCCATGACTTCAGTGGGAAA 59.289 45.455 0.00 0.00 40.28 3.13
289 290 2.814336 GTCCATGACTTCAGTGGGAAAC 59.186 50.000 0.00 0.00 34.44 2.78
290 291 2.441375 TCCATGACTTCAGTGGGAAACA 59.559 45.455 0.00 0.00 34.44 2.83
291 292 3.117701 TCCATGACTTCAGTGGGAAACAA 60.118 43.478 0.00 0.00 34.44 2.83
292 293 3.636300 CCATGACTTCAGTGGGAAACAAA 59.364 43.478 0.00 0.00 34.44 2.83
293 294 4.099266 CCATGACTTCAGTGGGAAACAAAA 59.901 41.667 0.00 0.00 34.44 2.44
294 295 5.221501 CCATGACTTCAGTGGGAAACAAAAT 60.222 40.000 0.00 0.00 34.44 1.82
295 296 6.015519 CCATGACTTCAGTGGGAAACAAAATA 60.016 38.462 0.00 0.00 34.44 1.40
296 297 6.633500 TGACTTCAGTGGGAAACAAAATAG 57.367 37.500 0.00 0.00 34.44 1.73
297 298 6.126409 TGACTTCAGTGGGAAACAAAATAGT 58.874 36.000 0.00 0.00 34.44 2.12
298 299 6.605594 TGACTTCAGTGGGAAACAAAATAGTT 59.394 34.615 0.00 0.00 34.44 2.24
299 300 7.123547 TGACTTCAGTGGGAAACAAAATAGTTT 59.876 33.333 0.00 0.00 43.90 2.66
315 316 9.840427 CAAAATAGTTTGTCTTACCATACAAGG 57.160 33.333 7.47 0.00 39.49 3.61
316 317 9.802039 AAAATAGTTTGTCTTACCATACAAGGA 57.198 29.630 0.00 0.00 36.96 3.36
317 318 9.449719 AAATAGTTTGTCTTACCATACAAGGAG 57.550 33.333 0.00 0.00 36.96 3.69
318 319 5.246307 AGTTTGTCTTACCATACAAGGAGC 58.754 41.667 0.00 0.00 36.96 4.70
319 320 5.013183 AGTTTGTCTTACCATACAAGGAGCT 59.987 40.000 0.00 0.00 36.96 4.09
320 321 4.737855 TGTCTTACCATACAAGGAGCTC 57.262 45.455 4.71 4.71 0.00 4.09
321 322 3.451178 TGTCTTACCATACAAGGAGCTCC 59.549 47.826 26.22 26.22 0.00 4.70
322 323 3.451178 GTCTTACCATACAAGGAGCTCCA 59.549 47.826 33.90 14.51 38.89 3.86
323 324 4.081087 GTCTTACCATACAAGGAGCTCCAA 60.081 45.833 33.90 16.63 38.89 3.53
324 325 4.162320 TCTTACCATACAAGGAGCTCCAAG 59.838 45.833 33.90 26.06 38.89 3.61
325 326 2.269940 ACCATACAAGGAGCTCCAAGT 58.730 47.619 33.90 29.79 38.89 3.16
326 327 3.450904 ACCATACAAGGAGCTCCAAGTA 58.549 45.455 33.90 30.79 38.89 2.24
327 328 3.844211 ACCATACAAGGAGCTCCAAGTAA 59.156 43.478 33.90 18.39 38.89 2.24
328 329 4.080863 ACCATACAAGGAGCTCCAAGTAAG 60.081 45.833 33.90 27.08 38.89 2.34
329 330 4.162320 CCATACAAGGAGCTCCAAGTAAGA 59.838 45.833 33.90 16.51 38.89 2.10
330 331 3.686916 ACAAGGAGCTCCAAGTAAGAC 57.313 47.619 33.90 4.03 38.89 3.01
331 332 2.972713 ACAAGGAGCTCCAAGTAAGACA 59.027 45.455 33.90 0.00 38.89 3.41
332 333 3.584848 ACAAGGAGCTCCAAGTAAGACAT 59.415 43.478 33.90 6.77 38.89 3.06
333 334 3.902881 AGGAGCTCCAAGTAAGACATG 57.097 47.619 33.90 0.00 38.89 3.21
334 335 3.177228 AGGAGCTCCAAGTAAGACATGT 58.823 45.455 33.90 5.98 38.89 3.21
335 336 3.055530 AGGAGCTCCAAGTAAGACATGTG 60.056 47.826 33.90 0.00 38.89 3.21
336 337 3.055819 GGAGCTCCAAGTAAGACATGTGA 60.056 47.826 28.43 0.00 35.64 3.58
337 338 4.180057 GAGCTCCAAGTAAGACATGTGAG 58.820 47.826 1.15 1.79 0.00 3.51
338 339 3.580458 AGCTCCAAGTAAGACATGTGAGT 59.420 43.478 1.15 0.00 0.00 3.41
339 340 4.772624 AGCTCCAAGTAAGACATGTGAGTA 59.227 41.667 1.15 0.00 0.00 2.59
340 341 4.865365 GCTCCAAGTAAGACATGTGAGTAC 59.135 45.833 1.15 2.48 0.00 2.73
341 342 5.566826 GCTCCAAGTAAGACATGTGAGTACA 60.567 44.000 1.15 0.00 41.89 2.90
342 343 6.413783 TCCAAGTAAGACATGTGAGTACAA 57.586 37.500 1.15 0.00 40.84 2.41
343 344 6.455647 TCCAAGTAAGACATGTGAGTACAAG 58.544 40.000 1.15 0.00 40.84 3.16
344 345 5.120830 CCAAGTAAGACATGTGAGTACAAGC 59.879 44.000 1.15 0.00 40.84 4.01
345 346 5.730296 AGTAAGACATGTGAGTACAAGCT 57.270 39.130 1.15 0.00 40.84 3.74
346 347 6.835819 AGTAAGACATGTGAGTACAAGCTA 57.164 37.500 1.15 0.00 40.84 3.32
347 348 7.228314 AGTAAGACATGTGAGTACAAGCTAA 57.772 36.000 1.15 0.00 40.84 3.09
348 349 7.667557 AGTAAGACATGTGAGTACAAGCTAAA 58.332 34.615 1.15 0.00 40.84 1.85
349 350 8.148351 AGTAAGACATGTGAGTACAAGCTAAAA 58.852 33.333 1.15 0.00 40.84 1.52
350 351 7.801716 AAGACATGTGAGTACAAGCTAAAAA 57.198 32.000 1.15 0.00 40.84 1.94
351 352 7.986085 AGACATGTGAGTACAAGCTAAAAAT 57.014 32.000 1.15 0.00 40.84 1.82
352 353 9.502091 AAGACATGTGAGTACAAGCTAAAAATA 57.498 29.630 1.15 0.00 40.84 1.40
353 354 9.502091 AGACATGTGAGTACAAGCTAAAAATAA 57.498 29.630 1.15 0.00 40.84 1.40
354 355 9.543018 GACATGTGAGTACAAGCTAAAAATAAC 57.457 33.333 1.15 0.00 40.84 1.89
355 356 8.512138 ACATGTGAGTACAAGCTAAAAATAACC 58.488 33.333 0.00 0.00 40.84 2.85
356 357 8.511321 CATGTGAGTACAAGCTAAAAATAACCA 58.489 33.333 0.00 0.00 40.84 3.67
357 358 8.453238 TGTGAGTACAAGCTAAAAATAACCAA 57.547 30.769 0.00 0.00 32.88 3.67
358 359 9.073475 TGTGAGTACAAGCTAAAAATAACCAAT 57.927 29.630 0.00 0.00 32.88 3.16
359 360 9.341899 GTGAGTACAAGCTAAAAATAACCAATG 57.658 33.333 0.00 0.00 0.00 2.82
360 361 9.290988 TGAGTACAAGCTAAAAATAACCAATGA 57.709 29.630 0.00 0.00 0.00 2.57
365 366 7.814587 ACAAGCTAAAAATAACCAATGAAGAGC 59.185 33.333 0.00 0.00 0.00 4.09
366 367 7.466746 AGCTAAAAATAACCAATGAAGAGCA 57.533 32.000 0.00 0.00 0.00 4.26
367 368 7.315890 AGCTAAAAATAACCAATGAAGAGCAC 58.684 34.615 0.00 0.00 0.00 4.40
368 369 7.039784 AGCTAAAAATAACCAATGAAGAGCACA 60.040 33.333 0.00 0.00 0.00 4.57
369 370 7.598493 GCTAAAAATAACCAATGAAGAGCACAA 59.402 33.333 0.00 0.00 0.00 3.33
370 371 9.643693 CTAAAAATAACCAATGAAGAGCACAAT 57.356 29.630 0.00 0.00 0.00 2.71
371 372 8.538409 AAAAATAACCAATGAAGAGCACAATC 57.462 30.769 0.00 0.00 0.00 2.67
372 373 3.837213 AACCAATGAAGAGCACAATCG 57.163 42.857 0.00 0.00 0.00 3.34
373 374 3.057969 ACCAATGAAGAGCACAATCGA 57.942 42.857 0.00 0.00 0.00 3.59
374 375 3.005554 ACCAATGAAGAGCACAATCGAG 58.994 45.455 0.00 0.00 0.00 4.04
375 376 3.005554 CCAATGAAGAGCACAATCGAGT 58.994 45.455 0.00 0.00 0.00 4.18
376 377 3.181513 CCAATGAAGAGCACAATCGAGTG 60.182 47.826 11.98 11.98 42.37 3.51
377 378 3.599730 ATGAAGAGCACAATCGAGTGA 57.400 42.857 21.18 0.00 42.05 3.41
378 379 2.951726 TGAAGAGCACAATCGAGTGAG 58.048 47.619 21.18 13.29 42.05 3.51
379 380 1.658095 GAAGAGCACAATCGAGTGAGC 59.342 52.381 24.44 24.44 42.05 4.26
380 381 0.108424 AGAGCACAATCGAGTGAGCC 60.108 55.000 27.21 19.46 42.05 4.70
381 382 0.390340 GAGCACAATCGAGTGAGCCA 60.390 55.000 27.21 0.00 42.05 4.75
382 383 0.035317 AGCACAATCGAGTGAGCCAA 59.965 50.000 27.21 0.00 42.05 4.52
383 384 1.089920 GCACAATCGAGTGAGCCAAT 58.910 50.000 22.00 0.00 42.05 3.16
384 385 1.470098 GCACAATCGAGTGAGCCAATT 59.530 47.619 22.00 0.00 42.05 2.32
385 386 2.677836 GCACAATCGAGTGAGCCAATTA 59.322 45.455 22.00 0.00 42.05 1.40
386 387 3.126858 GCACAATCGAGTGAGCCAATTAA 59.873 43.478 22.00 0.00 42.05 1.40
387 388 4.379394 GCACAATCGAGTGAGCCAATTAAA 60.379 41.667 22.00 0.00 42.05 1.52
388 389 5.677091 GCACAATCGAGTGAGCCAATTAAAT 60.677 40.000 22.00 0.00 42.05 1.40
389 390 6.324819 CACAATCGAGTGAGCCAATTAAATT 58.675 36.000 21.18 0.00 42.05 1.82
390 391 6.252015 CACAATCGAGTGAGCCAATTAAATTG 59.748 38.462 21.18 1.16 42.05 2.32
404 405 7.919313 CAATTAAATTGGAATCCACATCGAG 57.081 36.000 0.00 0.00 36.63 4.04
405 406 7.706159 CAATTAAATTGGAATCCACATCGAGA 58.294 34.615 0.00 0.00 36.63 4.04
406 407 8.355169 CAATTAAATTGGAATCCACATCGAGAT 58.645 33.333 0.00 0.00 36.63 2.75
407 408 7.880160 TTAAATTGGAATCCACATCGAGATT 57.120 32.000 0.00 0.00 35.43 2.40
408 409 5.762825 AATTGGAATCCACATCGAGATTG 57.237 39.130 0.00 0.00 32.91 2.67
409 410 3.198409 TGGAATCCACATCGAGATTGG 57.802 47.619 0.00 3.24 32.91 3.16
410 411 2.505407 TGGAATCCACATCGAGATTGGT 59.495 45.455 0.00 0.00 32.91 3.67
411 412 2.874701 GGAATCCACATCGAGATTGGTG 59.125 50.000 9.02 4.00 32.91 4.17
417 418 4.327982 CACATCGAGATTGGTGGATACT 57.672 45.455 0.00 0.00 37.61 2.12
418 419 4.302455 CACATCGAGATTGGTGGATACTC 58.698 47.826 0.00 0.00 37.61 2.59
419 420 3.960755 ACATCGAGATTGGTGGATACTCA 59.039 43.478 0.00 0.00 37.61 3.41
420 421 4.202161 ACATCGAGATTGGTGGATACTCAC 60.202 45.833 0.00 0.00 36.95 3.51
421 422 2.357952 TCGAGATTGGTGGATACTCACG 59.642 50.000 0.00 0.00 38.46 4.35
422 423 2.357952 CGAGATTGGTGGATACTCACGA 59.642 50.000 0.00 0.00 38.46 4.35
423 424 3.549019 CGAGATTGGTGGATACTCACGAG 60.549 52.174 0.00 0.00 38.46 4.18
424 425 3.632333 AGATTGGTGGATACTCACGAGA 58.368 45.455 0.00 0.00 38.46 4.04
425 426 4.023980 AGATTGGTGGATACTCACGAGAA 58.976 43.478 0.00 0.00 38.46 2.87
426 427 3.868757 TTGGTGGATACTCACGAGAAG 57.131 47.619 0.00 0.00 38.46 2.85
427 428 1.476891 TGGTGGATACTCACGAGAAGC 59.523 52.381 0.00 0.00 38.46 3.86
428 429 1.751924 GGTGGATACTCACGAGAAGCT 59.248 52.381 0.00 0.00 38.46 3.74
429 430 2.950309 GGTGGATACTCACGAGAAGCTA 59.050 50.000 0.00 0.00 38.46 3.32
430 431 3.003897 GGTGGATACTCACGAGAAGCTAG 59.996 52.174 0.00 0.00 38.46 3.42
431 432 2.619177 TGGATACTCACGAGAAGCTAGC 59.381 50.000 6.62 6.62 37.61 3.42
432 433 2.882137 GGATACTCACGAGAAGCTAGCT 59.118 50.000 12.68 12.68 0.00 3.32
433 434 3.316868 GGATACTCACGAGAAGCTAGCTT 59.683 47.826 29.71 29.71 39.23 3.74
434 435 4.202070 GGATACTCACGAGAAGCTAGCTTT 60.202 45.833 29.84 19.30 36.26 3.51
435 436 2.953020 ACTCACGAGAAGCTAGCTTTG 58.047 47.619 29.84 22.90 36.26 2.77
436 437 1.658095 CTCACGAGAAGCTAGCTTTGC 59.342 52.381 29.84 22.11 36.26 3.68
437 438 1.000843 TCACGAGAAGCTAGCTTTGCA 59.999 47.619 29.84 11.80 36.26 4.08
438 439 2.005451 CACGAGAAGCTAGCTTTGCAT 58.995 47.619 29.84 16.59 36.26 3.96
439 440 3.119137 TCACGAGAAGCTAGCTTTGCATA 60.119 43.478 29.84 12.36 36.26 3.14
440 441 3.618594 CACGAGAAGCTAGCTTTGCATAA 59.381 43.478 29.84 0.00 36.26 1.90
441 442 4.093408 CACGAGAAGCTAGCTTTGCATAAA 59.907 41.667 29.84 0.00 36.26 1.40
442 443 4.695455 ACGAGAAGCTAGCTTTGCATAAAA 59.305 37.500 29.84 0.00 36.26 1.52
443 444 5.181245 ACGAGAAGCTAGCTTTGCATAAAAA 59.819 36.000 29.84 0.00 36.26 1.94
444 445 5.736358 CGAGAAGCTAGCTTTGCATAAAAAG 59.264 40.000 29.84 9.66 39.66 2.27
445 446 6.402550 CGAGAAGCTAGCTTTGCATAAAAAGA 60.403 38.462 29.84 0.00 39.12 2.52
446 447 6.850555 AGAAGCTAGCTTTGCATAAAAAGAG 58.149 36.000 29.84 0.00 39.12 2.85
447 448 6.656693 AGAAGCTAGCTTTGCATAAAAAGAGA 59.343 34.615 29.84 0.00 39.12 3.10
448 449 6.434018 AGCTAGCTTTGCATAAAAAGAGAG 57.566 37.500 12.68 0.00 39.12 3.20
449 450 6.176183 AGCTAGCTTTGCATAAAAAGAGAGA 58.824 36.000 12.68 0.00 39.12 3.10
450 451 6.315891 AGCTAGCTTTGCATAAAAAGAGAGAG 59.684 38.462 12.68 0.00 39.12 3.20
451 452 5.307926 AGCTTTGCATAAAAAGAGAGAGC 57.692 39.130 0.00 0.00 39.12 4.09
452 453 4.763793 AGCTTTGCATAAAAAGAGAGAGCA 59.236 37.500 0.00 0.00 39.12 4.26
453 454 5.094134 GCTTTGCATAAAAAGAGAGAGCAG 58.906 41.667 0.00 0.00 39.12 4.24
454 455 5.633830 TTTGCATAAAAAGAGAGAGCAGG 57.366 39.130 0.00 0.00 0.00 4.85
455 456 3.012518 TGCATAAAAAGAGAGAGCAGGC 58.987 45.455 0.00 0.00 0.00 4.85
456 457 2.357323 GCATAAAAAGAGAGAGCAGGCC 59.643 50.000 0.00 0.00 0.00 5.19
457 458 3.883669 CATAAAAAGAGAGAGCAGGCCT 58.116 45.455 0.00 0.00 0.00 5.19
458 459 2.967745 AAAAAGAGAGAGCAGGCCTT 57.032 45.000 0.00 0.00 0.00 4.35
459 460 2.197283 AAAAGAGAGAGCAGGCCTTG 57.803 50.000 0.00 0.00 0.00 3.61
460 461 1.063183 AAAGAGAGAGCAGGCCTTGT 58.937 50.000 0.00 0.00 0.00 3.16
461 462 1.944177 AAGAGAGAGCAGGCCTTGTA 58.056 50.000 0.00 0.00 0.00 2.41
462 463 2.173126 AGAGAGAGCAGGCCTTGTAT 57.827 50.000 0.00 0.00 0.00 2.29
463 464 2.476199 AGAGAGAGCAGGCCTTGTATT 58.524 47.619 0.00 0.00 0.00 1.89
464 465 3.647636 AGAGAGAGCAGGCCTTGTATTA 58.352 45.455 0.00 0.00 0.00 0.98
465 466 4.230455 AGAGAGAGCAGGCCTTGTATTAT 58.770 43.478 0.00 0.00 0.00 1.28
466 467 5.398236 AGAGAGAGCAGGCCTTGTATTATA 58.602 41.667 0.00 0.00 0.00 0.98
467 468 5.480073 AGAGAGAGCAGGCCTTGTATTATAG 59.520 44.000 0.00 0.00 0.00 1.31
468 469 5.151454 AGAGAGCAGGCCTTGTATTATAGT 58.849 41.667 0.00 0.00 0.00 2.12
469 470 6.315714 AGAGAGCAGGCCTTGTATTATAGTA 58.684 40.000 0.00 0.00 0.00 1.82
470 471 6.435904 AGAGAGCAGGCCTTGTATTATAGTAG 59.564 42.308 0.00 0.00 0.00 2.57
471 472 5.482175 AGAGCAGGCCTTGTATTATAGTAGG 59.518 44.000 0.00 0.00 0.00 3.18
472 473 5.403512 AGCAGGCCTTGTATTATAGTAGGA 58.596 41.667 0.00 0.00 0.00 2.94
473 474 6.026186 AGCAGGCCTTGTATTATAGTAGGAT 58.974 40.000 0.00 0.00 0.00 3.24
474 475 6.502158 AGCAGGCCTTGTATTATAGTAGGATT 59.498 38.462 0.00 0.00 0.00 3.01
475 476 7.017651 AGCAGGCCTTGTATTATAGTAGGATTT 59.982 37.037 0.00 0.00 0.00 2.17
476 477 8.319146 GCAGGCCTTGTATTATAGTAGGATTTA 58.681 37.037 0.00 0.00 0.00 1.40
477 478 9.654663 CAGGCCTTGTATTATAGTAGGATTTAC 57.345 37.037 0.00 0.00 0.00 2.01
478 479 9.617053 AGGCCTTGTATTATAGTAGGATTTACT 57.383 33.333 0.00 0.00 0.00 2.24
889 890 2.099921 AGCTAACACACGCTCATCTAGG 59.900 50.000 0.00 0.00 0.00 3.02
910 920 3.551863 GGTGTCCTTGATCTAGATCTGCG 60.552 52.174 28.51 17.74 38.60 5.18
913 923 2.295629 TCCTTGATCTAGATCTGCGCAG 59.704 50.000 31.53 31.53 38.60 5.18
916 926 3.341291 TGATCTAGATCTGCGCAGCCG 62.341 57.143 32.44 16.93 44.24 5.52
944 964 5.471456 CCCATATACCATTTCTCTTCTGCAC 59.529 44.000 0.00 0.00 0.00 4.57
946 966 6.017605 CCATATACCATTTCTCTTCTGCACAC 60.018 42.308 0.00 0.00 0.00 3.82
947 967 3.213206 ACCATTTCTCTTCTGCACACA 57.787 42.857 0.00 0.00 0.00 3.72
969 990 3.199071 ACTTGTGTTTCCCTGTGTCTGTA 59.801 43.478 0.00 0.00 0.00 2.74
982 1013 2.540101 GTGTCTGTACAGTGTGAGTTGC 59.460 50.000 21.99 4.15 35.91 4.17
983 1014 2.167487 TGTCTGTACAGTGTGAGTTGCA 59.833 45.455 21.99 6.34 0.00 4.08
985 1016 3.621268 GTCTGTACAGTGTGAGTTGCAAA 59.379 43.478 21.99 0.00 0.00 3.68
998 1029 2.825205 GTTGCAAACTGTTGGAGCAAT 58.175 42.857 22.33 0.00 45.53 3.56
1062 1093 0.977395 ACAAGGTGTCCAGCTACCTC 59.023 55.000 6.37 0.00 46.28 3.85
1146 1177 5.942236 GCTTCCAGCCATCTTGAATATCATA 59.058 40.000 0.00 0.00 34.48 2.15
1162 1193 1.615883 TCATAGAAGATGCGGAGGAGC 59.384 52.381 0.00 0.00 37.71 4.70
1337 1368 1.078567 GCCTCTTCCCTGCTCACAG 60.079 63.158 0.00 0.00 44.05 3.66
1345 1376 1.609239 CCTGCTCACAGCCCCATTA 59.391 57.895 0.00 0.00 43.02 1.90
1353 1384 3.750371 TCACAGCCCCATTATATTTCGG 58.250 45.455 0.00 0.00 0.00 4.30
1375 1406 1.379576 AGGATGGGCAAGAAGCTGC 60.380 57.895 0.00 0.00 44.79 5.25
1405 1436 1.098050 GCGCATCATTGAGGTCCTTT 58.902 50.000 0.30 0.00 0.00 3.11
1431 1462 6.373495 TCACAGAGATGAATGAACTTGGATTG 59.627 38.462 0.00 0.00 0.00 2.67
1444 1475 2.655090 TGGATTGAAACACCTGCAGA 57.345 45.000 17.39 0.00 0.00 4.26
1521 1552 3.776969 AGAAGGATATTGTCAGCAGGTCA 59.223 43.478 0.00 0.00 0.00 4.02
1545 1576 7.608376 TCAAGAGACGAAGAGAAGAAGAAGATA 59.392 37.037 0.00 0.00 0.00 1.98
1641 1675 1.972872 AGACCACCTTTGCTCAACTG 58.027 50.000 0.00 0.00 0.00 3.16
1677 1711 5.185635 CCCTGCAATCAAGGAGTATTTTCAA 59.814 40.000 0.00 0.00 0.00 2.69
1758 1792 1.957177 TGTCAGGACAGTGAGAGTGAC 59.043 52.381 0.00 5.05 36.21 3.67
1804 1838 5.705609 TCAAAATGAAGTAAGTGGGAAGC 57.294 39.130 0.00 0.00 0.00 3.86
1827 1861 5.277345 GCGATACCTTATTGTGTTGGATGAC 60.277 44.000 0.00 0.00 0.00 3.06
1929 1963 3.744426 CGACCACTCGTAATGAAAAGGTT 59.256 43.478 0.00 0.00 35.00 3.50
1937 1971 5.757886 TCGTAATGAAAAGGTTGCTCAAAG 58.242 37.500 0.00 0.00 0.00 2.77
1938 1972 4.382754 CGTAATGAAAAGGTTGCTCAAAGC 59.617 41.667 0.00 0.00 42.82 3.51
1951 1987 3.499048 GCTCAAAGCATGAAGATGTGTG 58.501 45.455 0.00 0.00 41.89 3.82
1957 1993 5.717078 AAGCATGAAGATGTGTGTTGATT 57.283 34.783 0.00 0.00 31.50 2.57
1989 2025 9.855361 CATAATCTCGAAAAGCTACATAAAGTG 57.145 33.333 0.00 0.00 0.00 3.16
2035 2071 3.141398 AGAGCATTCTGTTCGCAAAAGA 58.859 40.909 0.00 0.00 32.57 2.52
2036 2072 3.755378 AGAGCATTCTGTTCGCAAAAGAT 59.245 39.130 0.00 0.00 32.57 2.40
2044 2080 4.937620 TCTGTTCGCAAAAGATAGATGCTT 59.062 37.500 0.00 0.00 37.92 3.91
2050 2086 4.807834 CGCAAAAGATAGATGCTTCTGAGA 59.192 41.667 12.19 0.00 37.92 3.27
2068 2104 8.547967 TTCTGAGATAAGTAACATGGTTGAAC 57.452 34.615 0.00 0.00 0.00 3.18
2073 2109 9.817809 GAGATAAGTAACATGGTTGAACAGATA 57.182 33.333 0.00 0.00 0.00 1.98
2077 2113 5.643777 AGTAACATGGTTGAACAGATACTGC 59.356 40.000 0.00 0.00 34.37 4.40
2166 2202 2.649331 AAGAATGGACGGACGTACTG 57.351 50.000 8.69 0.00 0.00 2.74
2199 2235 2.697654 AGCTGCAATGAGAAGACAGAC 58.302 47.619 1.02 0.00 0.00 3.51
2304 2428 8.350722 CCAAAAGATTATGAGATTGATGTGGAG 58.649 37.037 0.00 0.00 0.00 3.86
2377 2501 4.985538 TGACAATCTTGAAAAGGTAGGCT 58.014 39.130 0.00 0.00 46.24 4.58
2460 2599 4.502950 CCTCAAAGAGAACAGAGTGAGCTT 60.503 45.833 0.00 0.00 32.86 3.74
2511 2656 3.867857 TCTTATGCATGACGTTGCCTTA 58.132 40.909 10.16 0.00 42.06 2.69
2513 2658 4.273235 TCTTATGCATGACGTTGCCTTATG 59.727 41.667 10.16 4.87 42.06 1.90
2532 2677 6.980397 CCTTATGTGTTATGGGAAAAGATTGC 59.020 38.462 0.00 0.00 0.00 3.56
2538 2683 5.420739 TGTTATGGGAAAAGATTGCCTTACC 59.579 40.000 0.85 0.00 46.54 2.85
2546 2691 6.405842 GGAAAAGATTGCCTTACCATAGTTGG 60.406 42.308 0.00 0.00 40.74 3.77
2584 2729 1.970114 CTGTTGTCAGCAGGCCCTG 60.970 63.158 6.32 6.32 34.79 4.45
2600 2745 1.302033 CTGCTCGCCACCTGTTCTT 60.302 57.895 0.00 0.00 0.00 2.52
2605 2750 2.935238 GCTCGCCACCTGTTCTTATCAA 60.935 50.000 0.00 0.00 0.00 2.57
2606 2751 2.932614 CTCGCCACCTGTTCTTATCAAG 59.067 50.000 0.00 0.00 0.00 3.02
2611 2756 3.679980 CCACCTGTTCTTATCAAGTCGTG 59.320 47.826 0.00 0.00 0.00 4.35
2635 2780 5.007136 GTCATCGGAACTCTTTTGGATGATC 59.993 44.000 5.01 0.00 41.35 2.92
2668 2813 2.496871 CAGTCTCCAGCTCTTCAGACAT 59.503 50.000 11.54 0.00 38.20 3.06
2702 2847 1.972588 ATAAGGCCTCTTGGTCCAGT 58.027 50.000 5.23 0.00 39.18 4.00
2760 2905 6.417044 CACTGCAACTCTTTGAATTGAGAAAG 59.583 38.462 0.00 0.00 34.24 2.62
2763 2908 5.628606 GCAACTCTTTGAATTGAGAAAGCTC 59.371 40.000 0.00 0.00 36.95 4.09
2772 2923 0.321671 TGAGAAAGCTCCCACTTCGG 59.678 55.000 0.00 0.00 40.55 4.30
2820 2974 8.324306 AGGTATCTTGATCTCTCAAACAATGAA 58.676 33.333 0.00 0.00 40.78 2.57
2922 3076 5.800296 TGTCGACTTCCAAAGGATATGAAA 58.200 37.500 17.92 0.00 0.00 2.69
2950 3104 4.142160 TGACAAATCTCCGTCACCTCTATG 60.142 45.833 0.00 0.00 37.23 2.23
2970 3124 4.420522 TGCTAGTGGATGCACATCATTA 57.579 40.909 20.21 1.70 39.54 1.90
2991 3145 1.748122 GTGCATGCCTCCAGACCTG 60.748 63.158 16.68 0.00 0.00 4.00
3040 3194 5.467035 AACATATTTTGTGGTGGGTTCTG 57.533 39.130 0.00 0.00 38.99 3.02
3070 3224 8.534954 TGGTTGCAGTACTATTAGAGAACTAT 57.465 34.615 0.00 0.00 0.00 2.12
3072 3226 8.414778 GGTTGCAGTACTATTAGAGAACTATGT 58.585 37.037 0.00 0.00 0.00 2.29
3074 3228 7.941919 TGCAGTACTATTAGAGAACTATGTGG 58.058 38.462 0.00 0.00 0.00 4.17
3093 3247 3.191371 GTGGCTTAAATCTTGGTGGTGAG 59.809 47.826 0.00 0.00 0.00 3.51
3094 3248 2.164422 GGCTTAAATCTTGGTGGTGAGC 59.836 50.000 0.00 0.00 0.00 4.26
3282 3436 7.607250 CGCTGGAGTTTCTAGGAATATATTCT 58.393 38.462 21.80 12.19 37.00 2.40
3320 3474 2.374839 TCCCAACATGGATGACAAGTCA 59.625 45.455 5.24 5.24 40.96 3.41
3376 3530 1.011968 TGGTTGTACGATGTGCGAGC 61.012 55.000 0.00 0.00 44.57 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.244654 TCATCACCAATTTACCATGTGAGAA 58.755 36.000 0.00 0.00 39.12 2.87
4 5 5.814481 TCATCACCAATTTACCATGTGAGA 58.186 37.500 0.00 0.00 39.12 3.27
5 6 6.095860 ACATCATCACCAATTTACCATGTGAG 59.904 38.462 0.00 0.00 39.12 3.51
7 8 6.211587 ACATCATCACCAATTTACCATGTG 57.788 37.500 0.00 0.00 0.00 3.21
8 9 6.321181 GGTACATCATCACCAATTTACCATGT 59.679 38.462 0.00 0.00 34.77 3.21
9 10 6.547141 AGGTACATCATCACCAATTTACCATG 59.453 38.462 0.00 0.00 37.28 3.66
10 11 6.672593 AGGTACATCATCACCAATTTACCAT 58.327 36.000 0.00 0.00 37.28 3.55
11 12 6.073447 AGGTACATCATCACCAATTTACCA 57.927 37.500 0.00 0.00 37.28 3.25
12 13 8.691661 ATAAGGTACATCATCACCAATTTACC 57.308 34.615 0.00 0.00 37.28 2.85
13 14 9.950680 CAATAAGGTACATCATCACCAATTTAC 57.049 33.333 0.00 0.00 37.28 2.01
14 15 9.693739 ACAATAAGGTACATCATCACCAATTTA 57.306 29.630 0.00 0.00 37.28 1.40
15 16 8.593945 ACAATAAGGTACATCATCACCAATTT 57.406 30.769 0.00 0.00 37.28 1.82
16 17 8.055181 AGACAATAAGGTACATCATCACCAATT 58.945 33.333 0.00 0.00 37.28 2.32
17 18 7.577303 AGACAATAAGGTACATCATCACCAAT 58.423 34.615 0.00 0.00 37.28 3.16
18 19 6.957631 AGACAATAAGGTACATCATCACCAA 58.042 36.000 0.00 0.00 37.28 3.67
19 20 6.560003 AGACAATAAGGTACATCATCACCA 57.440 37.500 0.00 0.00 37.28 4.17
20 21 7.047891 TCAAGACAATAAGGTACATCATCACC 58.952 38.462 0.00 0.00 34.86 4.02
21 22 7.981789 TCTCAAGACAATAAGGTACATCATCAC 59.018 37.037 0.00 0.00 0.00 3.06
22 23 8.078060 TCTCAAGACAATAAGGTACATCATCA 57.922 34.615 0.00 0.00 0.00 3.07
23 24 9.202273 GATCTCAAGACAATAAGGTACATCATC 57.798 37.037 0.00 0.00 0.00 2.92
24 25 8.932610 AGATCTCAAGACAATAAGGTACATCAT 58.067 33.333 0.00 0.00 0.00 2.45
25 26 8.311395 AGATCTCAAGACAATAAGGTACATCA 57.689 34.615 0.00 0.00 0.00 3.07
26 27 7.593273 CGAGATCTCAAGACAATAAGGTACATC 59.407 40.741 22.31 0.00 0.00 3.06
27 28 7.285629 TCGAGATCTCAAGACAATAAGGTACAT 59.714 37.037 22.31 0.00 0.00 2.29
28 29 6.602009 TCGAGATCTCAAGACAATAAGGTACA 59.398 38.462 22.31 0.00 0.00 2.90
29 30 7.028926 TCGAGATCTCAAGACAATAAGGTAC 57.971 40.000 22.31 0.00 0.00 3.34
30 31 7.721842 AGATCGAGATCTCAAGACAATAAGGTA 59.278 37.037 22.31 0.00 44.37 3.08
31 32 6.549364 AGATCGAGATCTCAAGACAATAAGGT 59.451 38.462 22.31 0.00 44.37 3.50
32 33 6.980593 AGATCGAGATCTCAAGACAATAAGG 58.019 40.000 22.31 1.84 44.37 2.69
46 47 5.586339 TGATTTGTCTGTGAGATCGAGATC 58.414 41.667 5.00 5.00 38.09 2.75
47 48 5.588958 TGATTTGTCTGTGAGATCGAGAT 57.411 39.130 0.00 0.00 0.00 2.75
48 49 5.588958 ATGATTTGTCTGTGAGATCGAGA 57.411 39.130 0.00 0.00 0.00 4.04
49 50 5.689514 GGTATGATTTGTCTGTGAGATCGAG 59.310 44.000 0.00 0.00 0.00 4.04
50 51 5.592054 GGTATGATTTGTCTGTGAGATCGA 58.408 41.667 0.00 0.00 0.00 3.59
51 52 4.442403 CGGTATGATTTGTCTGTGAGATCG 59.558 45.833 0.00 0.00 0.00 3.69
52 53 4.210120 GCGGTATGATTTGTCTGTGAGATC 59.790 45.833 0.00 0.00 0.00 2.75
53 54 4.122776 GCGGTATGATTTGTCTGTGAGAT 58.877 43.478 0.00 0.00 0.00 2.75
54 55 3.195610 AGCGGTATGATTTGTCTGTGAGA 59.804 43.478 0.00 0.00 0.00 3.27
55 56 3.308053 CAGCGGTATGATTTGTCTGTGAG 59.692 47.826 0.00 0.00 0.00 3.51
56 57 3.056179 TCAGCGGTATGATTTGTCTGTGA 60.056 43.478 0.00 0.00 0.00 3.58
57 58 3.261580 TCAGCGGTATGATTTGTCTGTG 58.738 45.455 0.00 0.00 0.00 3.66
58 59 3.610040 TCAGCGGTATGATTTGTCTGT 57.390 42.857 0.00 0.00 0.00 3.41
59 60 4.122046 TCATCAGCGGTATGATTTGTCTG 58.878 43.478 0.00 0.00 37.84 3.51
60 61 4.406648 TCATCAGCGGTATGATTTGTCT 57.593 40.909 0.00 0.00 37.84 3.41
61 62 5.163764 TGTTTCATCAGCGGTATGATTTGTC 60.164 40.000 7.32 0.00 37.84 3.18
62 63 4.699735 TGTTTCATCAGCGGTATGATTTGT 59.300 37.500 7.32 0.00 37.84 2.83
63 64 5.233957 TGTTTCATCAGCGGTATGATTTG 57.766 39.130 7.32 0.00 37.84 2.32
64 65 5.895636 TTGTTTCATCAGCGGTATGATTT 57.104 34.783 7.32 0.00 37.84 2.17
65 66 5.895636 TTTGTTTCATCAGCGGTATGATT 57.104 34.783 7.32 0.00 37.84 2.57
66 67 5.895636 TTTTGTTTCATCAGCGGTATGAT 57.104 34.783 7.32 0.00 40.59 2.45
67 68 5.697473 TTTTTGTTTCATCAGCGGTATGA 57.303 34.783 0.00 0.00 0.00 2.15
68 69 6.949578 AATTTTTGTTTCATCAGCGGTATG 57.050 33.333 0.00 0.00 0.00 2.39
69 70 8.686334 AGATAATTTTTGTTTCATCAGCGGTAT 58.314 29.630 0.00 0.00 0.00 2.73
70 71 8.050778 AGATAATTTTTGTTTCATCAGCGGTA 57.949 30.769 0.00 0.00 0.00 4.02
71 72 6.924111 AGATAATTTTTGTTTCATCAGCGGT 58.076 32.000 0.00 0.00 0.00 5.68
72 73 8.909708 TTAGATAATTTTTGTTTCATCAGCGG 57.090 30.769 0.00 0.00 0.00 5.52
118 119 9.567776 TCATGTTTTAAGAGGTGTCTAATTTGA 57.432 29.630 0.00 0.00 30.45 2.69
119 120 9.612620 GTCATGTTTTAAGAGGTGTCTAATTTG 57.387 33.333 0.00 0.00 30.45 2.32
120 121 9.349713 TGTCATGTTTTAAGAGGTGTCTAATTT 57.650 29.630 0.00 0.00 30.45 1.82
121 122 8.784043 GTGTCATGTTTTAAGAGGTGTCTAATT 58.216 33.333 0.00 0.00 30.45 1.40
122 123 7.936847 TGTGTCATGTTTTAAGAGGTGTCTAAT 59.063 33.333 0.00 0.00 30.45 1.73
123 124 7.225931 GTGTGTCATGTTTTAAGAGGTGTCTAA 59.774 37.037 0.00 0.00 30.45 2.10
124 125 6.704493 GTGTGTCATGTTTTAAGAGGTGTCTA 59.296 38.462 0.00 0.00 30.45 2.59
125 126 5.527582 GTGTGTCATGTTTTAAGAGGTGTCT 59.472 40.000 0.00 0.00 32.81 3.41
126 127 5.558273 CGTGTGTCATGTTTTAAGAGGTGTC 60.558 44.000 0.00 0.00 0.00 3.67
127 128 4.272504 CGTGTGTCATGTTTTAAGAGGTGT 59.727 41.667 0.00 0.00 0.00 4.16
128 129 4.319477 CCGTGTGTCATGTTTTAAGAGGTG 60.319 45.833 0.00 0.00 0.00 4.00
129 130 3.813166 CCGTGTGTCATGTTTTAAGAGGT 59.187 43.478 0.00 0.00 0.00 3.85
130 131 3.364964 GCCGTGTGTCATGTTTTAAGAGG 60.365 47.826 0.00 0.00 0.00 3.69
131 132 3.249799 TGCCGTGTGTCATGTTTTAAGAG 59.750 43.478 0.00 0.00 0.00 2.85
132 133 3.206964 TGCCGTGTGTCATGTTTTAAGA 58.793 40.909 0.00 0.00 0.00 2.10
133 134 3.617540 TGCCGTGTGTCATGTTTTAAG 57.382 42.857 0.00 0.00 0.00 1.85
134 135 4.576216 ATTGCCGTGTGTCATGTTTTAA 57.424 36.364 0.00 0.00 0.00 1.52
135 136 4.083217 GGTATTGCCGTGTGTCATGTTTTA 60.083 41.667 0.00 0.00 0.00 1.52
136 137 3.305064 GGTATTGCCGTGTGTCATGTTTT 60.305 43.478 0.00 0.00 0.00 2.43
137 138 2.227865 GGTATTGCCGTGTGTCATGTTT 59.772 45.455 0.00 0.00 0.00 2.83
138 139 1.810151 GGTATTGCCGTGTGTCATGTT 59.190 47.619 0.00 0.00 0.00 2.71
139 140 1.271108 TGGTATTGCCGTGTGTCATGT 60.271 47.619 0.00 0.00 41.21 3.21
140 141 1.447945 TGGTATTGCCGTGTGTCATG 58.552 50.000 0.00 0.00 41.21 3.07
141 142 2.192664 TTGGTATTGCCGTGTGTCAT 57.807 45.000 0.00 0.00 41.21 3.06
142 143 2.080693 GATTGGTATTGCCGTGTGTCA 58.919 47.619 0.00 0.00 41.21 3.58
143 144 2.351726 GAGATTGGTATTGCCGTGTGTC 59.648 50.000 0.00 0.00 41.21 3.67
144 145 2.290008 TGAGATTGGTATTGCCGTGTGT 60.290 45.455 0.00 0.00 41.21 3.72
145 146 2.355197 TGAGATTGGTATTGCCGTGTG 58.645 47.619 0.00 0.00 41.21 3.82
146 147 2.779755 TGAGATTGGTATTGCCGTGT 57.220 45.000 0.00 0.00 41.21 4.49
147 148 3.440173 ACTTTGAGATTGGTATTGCCGTG 59.560 43.478 0.00 0.00 41.21 4.94
148 149 3.686016 ACTTTGAGATTGGTATTGCCGT 58.314 40.909 0.00 0.00 41.21 5.68
149 150 4.876107 AGTACTTTGAGATTGGTATTGCCG 59.124 41.667 0.00 0.00 41.21 5.69
150 151 6.759497 AAGTACTTTGAGATTGGTATTGCC 57.241 37.500 1.12 0.00 37.90 4.52
151 152 9.331282 AGATAAGTACTTTGAGATTGGTATTGC 57.669 33.333 14.49 0.00 0.00 3.56
177 178 9.860898 GGGTTAAGACTTAAGATAACGTTAAGA 57.139 33.333 12.81 0.00 39.06 2.10
178 179 9.643693 TGGGTTAAGACTTAAGATAACGTTAAG 57.356 33.333 12.81 9.07 41.42 1.85
180 181 9.807649 GATGGGTTAAGACTTAAGATAACGTTA 57.192 33.333 11.02 11.02 0.00 3.18
181 182 8.537858 AGATGGGTTAAGACTTAAGATAACGTT 58.462 33.333 10.09 5.88 0.00 3.99
182 183 7.980099 CAGATGGGTTAAGACTTAAGATAACGT 59.020 37.037 10.09 5.75 0.00 3.99
183 184 7.042658 GCAGATGGGTTAAGACTTAAGATAACG 60.043 40.741 10.09 3.89 0.00 3.18
184 185 7.988028 AGCAGATGGGTTAAGACTTAAGATAAC 59.012 37.037 10.09 13.87 0.00 1.89
185 186 8.090788 AGCAGATGGGTTAAGACTTAAGATAA 57.909 34.615 10.09 3.07 0.00 1.75
186 187 7.202011 GGAGCAGATGGGTTAAGACTTAAGATA 60.202 40.741 10.09 0.00 0.00 1.98
187 188 6.408662 GGAGCAGATGGGTTAAGACTTAAGAT 60.409 42.308 10.09 1.57 0.00 2.40
188 189 5.104900 GGAGCAGATGGGTTAAGACTTAAGA 60.105 44.000 10.09 0.00 0.00 2.10
189 190 5.104735 AGGAGCAGATGGGTTAAGACTTAAG 60.105 44.000 7.93 0.00 0.00 1.85
190 191 4.783227 AGGAGCAGATGGGTTAAGACTTAA 59.217 41.667 3.44 3.44 0.00 1.85
191 192 4.362677 AGGAGCAGATGGGTTAAGACTTA 58.637 43.478 0.00 0.00 0.00 2.24
192 193 3.185455 AGGAGCAGATGGGTTAAGACTT 58.815 45.455 0.00 0.00 0.00 3.01
193 194 2.769095 GAGGAGCAGATGGGTTAAGACT 59.231 50.000 0.00 0.00 0.00 3.24
194 195 2.769095 AGAGGAGCAGATGGGTTAAGAC 59.231 50.000 0.00 0.00 0.00 3.01
195 196 3.121929 AGAGGAGCAGATGGGTTAAGA 57.878 47.619 0.00 0.00 0.00 2.10
196 197 3.454082 AGAAGAGGAGCAGATGGGTTAAG 59.546 47.826 0.00 0.00 0.00 1.85
197 198 3.454858 AGAAGAGGAGCAGATGGGTTAA 58.545 45.455 0.00 0.00 0.00 2.01
198 199 3.121929 AGAAGAGGAGCAGATGGGTTA 57.878 47.619 0.00 0.00 0.00 2.85
199 200 1.963985 AGAAGAGGAGCAGATGGGTT 58.036 50.000 0.00 0.00 0.00 4.11
200 201 2.023501 AGTAGAAGAGGAGCAGATGGGT 60.024 50.000 0.00 0.00 0.00 4.51
201 202 2.676748 AGTAGAAGAGGAGCAGATGGG 58.323 52.381 0.00 0.00 0.00 4.00
202 203 3.069443 GGAAGTAGAAGAGGAGCAGATGG 59.931 52.174 0.00 0.00 0.00 3.51
203 204 3.069443 GGGAAGTAGAAGAGGAGCAGATG 59.931 52.174 0.00 0.00 0.00 2.90
204 205 3.304829 GGGAAGTAGAAGAGGAGCAGAT 58.695 50.000 0.00 0.00 0.00 2.90
205 206 2.043115 TGGGAAGTAGAAGAGGAGCAGA 59.957 50.000 0.00 0.00 0.00 4.26
206 207 2.461695 TGGGAAGTAGAAGAGGAGCAG 58.538 52.381 0.00 0.00 0.00 4.24
207 208 2.623418 TGGGAAGTAGAAGAGGAGCA 57.377 50.000 0.00 0.00 0.00 4.26
208 209 3.452627 TCATTGGGAAGTAGAAGAGGAGC 59.547 47.826 0.00 0.00 0.00 4.70
209 210 5.885449 ATCATTGGGAAGTAGAAGAGGAG 57.115 43.478 0.00 0.00 0.00 3.69
210 211 5.131142 GGAATCATTGGGAAGTAGAAGAGGA 59.869 44.000 0.00 0.00 0.00 3.71
211 212 5.104360 TGGAATCATTGGGAAGTAGAAGAGG 60.104 44.000 0.00 0.00 0.00 3.69
212 213 5.994250 TGGAATCATTGGGAAGTAGAAGAG 58.006 41.667 0.00 0.00 0.00 2.85
213 214 6.581388 ATGGAATCATTGGGAAGTAGAAGA 57.419 37.500 0.00 0.00 0.00 2.87
214 215 8.752005 TTAATGGAATCATTGGGAAGTAGAAG 57.248 34.615 2.27 0.00 42.93 2.85
215 216 9.135189 CATTAATGGAATCATTGGGAAGTAGAA 57.865 33.333 7.62 0.00 42.93 2.10
216 217 8.501904 TCATTAATGGAATCATTGGGAAGTAGA 58.498 33.333 15.36 0.00 42.93 2.59
217 218 8.696043 TCATTAATGGAATCATTGGGAAGTAG 57.304 34.615 15.36 0.00 42.93 2.57
218 219 7.231317 GCTCATTAATGGAATCATTGGGAAGTA 59.769 37.037 15.36 0.00 42.93 2.24
219 220 6.041296 GCTCATTAATGGAATCATTGGGAAGT 59.959 38.462 15.36 0.00 42.93 3.01
220 221 6.041182 TGCTCATTAATGGAATCATTGGGAAG 59.959 38.462 15.36 2.14 42.93 3.46
221 222 5.898397 TGCTCATTAATGGAATCATTGGGAA 59.102 36.000 15.36 0.00 42.93 3.97
222 223 5.456779 TGCTCATTAATGGAATCATTGGGA 58.543 37.500 15.36 0.00 42.93 4.37
223 224 5.303589 ACTGCTCATTAATGGAATCATTGGG 59.696 40.000 15.36 0.00 42.93 4.12
224 225 6.401047 ACTGCTCATTAATGGAATCATTGG 57.599 37.500 15.36 1.19 42.93 3.16
225 226 7.859377 GTGTACTGCTCATTAATGGAATCATTG 59.141 37.037 15.36 1.77 42.93 2.82
226 227 7.557358 TGTGTACTGCTCATTAATGGAATCATT 59.443 33.333 15.36 5.71 44.87 2.57
227 228 7.056006 TGTGTACTGCTCATTAATGGAATCAT 58.944 34.615 15.36 0.80 34.56 2.45
228 229 6.413892 TGTGTACTGCTCATTAATGGAATCA 58.586 36.000 15.36 7.43 0.00 2.57
229 230 6.512415 GCTGTGTACTGCTCATTAATGGAATC 60.512 42.308 15.36 3.50 37.75 2.52
230 231 5.297776 GCTGTGTACTGCTCATTAATGGAAT 59.702 40.000 15.36 0.62 37.75 3.01
231 232 4.635765 GCTGTGTACTGCTCATTAATGGAA 59.364 41.667 15.36 0.50 37.75 3.53
232 233 4.080919 AGCTGTGTACTGCTCATTAATGGA 60.081 41.667 15.36 2.03 46.09 3.41
233 234 4.194640 AGCTGTGTACTGCTCATTAATGG 58.805 43.478 15.36 7.47 46.09 3.16
249 250 7.938901 CATGGACTCATATAGCACAAGCTGTG 61.939 46.154 10.75 10.75 42.60 3.66
250 251 5.971846 CATGGACTCATATAGCACAAGCTGT 60.972 44.000 0.00 0.00 44.89 4.40
251 252 4.451435 CATGGACTCATATAGCACAAGCTG 59.549 45.833 0.00 0.00 40.94 4.24
252 253 4.346127 TCATGGACTCATATAGCACAAGCT 59.654 41.667 0.00 0.00 42.42 3.74
253 254 4.450419 GTCATGGACTCATATAGCACAAGC 59.550 45.833 0.00 0.00 34.71 4.01
254 255 5.851720 AGTCATGGACTCATATAGCACAAG 58.148 41.667 0.00 0.00 38.71 3.16
255 256 5.876651 AGTCATGGACTCATATAGCACAA 57.123 39.130 0.00 0.00 38.71 3.33
256 257 5.363580 TGAAGTCATGGACTCATATAGCACA 59.636 40.000 0.00 0.00 42.59 4.57
257 258 5.847304 TGAAGTCATGGACTCATATAGCAC 58.153 41.667 0.00 0.00 42.59 4.40
258 259 5.600069 ACTGAAGTCATGGACTCATATAGCA 59.400 40.000 0.00 0.00 42.59 3.49
259 260 5.925397 CACTGAAGTCATGGACTCATATAGC 59.075 44.000 0.00 0.00 42.59 2.97
260 261 6.453943 CCACTGAAGTCATGGACTCATATAG 58.546 44.000 0.00 0.00 42.59 1.31
261 262 5.305386 CCCACTGAAGTCATGGACTCATATA 59.695 44.000 0.00 0.00 42.59 0.86
262 263 4.102210 CCCACTGAAGTCATGGACTCATAT 59.898 45.833 0.00 0.00 42.59 1.78
263 264 3.452264 CCCACTGAAGTCATGGACTCATA 59.548 47.826 0.00 0.00 42.59 2.15
264 265 2.238144 CCCACTGAAGTCATGGACTCAT 59.762 50.000 0.00 0.00 42.59 2.90
265 266 1.625315 CCCACTGAAGTCATGGACTCA 59.375 52.381 0.00 0.00 42.59 3.41
266 267 1.902508 TCCCACTGAAGTCATGGACTC 59.097 52.381 0.00 0.00 42.59 3.36
267 268 2.030027 TCCCACTGAAGTCATGGACT 57.970 50.000 9.85 0.00 45.64 3.85
268 269 2.814336 GTTTCCCACTGAAGTCATGGAC 59.186 50.000 9.85 0.00 35.33 4.02
269 270 2.441375 TGTTTCCCACTGAAGTCATGGA 59.559 45.455 9.85 2.26 35.33 3.41
270 271 2.862541 TGTTTCCCACTGAAGTCATGG 58.137 47.619 0.00 0.00 33.63 3.66
271 272 4.916983 TTTGTTTCCCACTGAAGTCATG 57.083 40.909 0.00 0.00 33.63 3.07
272 273 6.777580 ACTATTTTGTTTCCCACTGAAGTCAT 59.222 34.615 0.00 0.00 33.63 3.06
273 274 6.126409 ACTATTTTGTTTCCCACTGAAGTCA 58.874 36.000 0.00 0.00 33.63 3.41
274 275 6.635030 ACTATTTTGTTTCCCACTGAAGTC 57.365 37.500 0.00 0.00 33.63 3.01
275 276 7.264947 CAAACTATTTTGTTTCCCACTGAAGT 58.735 34.615 0.00 0.00 37.98 3.01
276 277 7.698836 CAAACTATTTTGTTTCCCACTGAAG 57.301 36.000 0.00 0.00 37.98 3.02
289 290 9.840427 CCTTGTATGGTAAGACAAACTATTTTG 57.160 33.333 4.15 4.15 46.61 2.44
290 291 9.802039 TCCTTGTATGGTAAGACAAACTATTTT 57.198 29.630 0.00 0.00 37.08 1.82
291 292 9.449719 CTCCTTGTATGGTAAGACAAACTATTT 57.550 33.333 0.00 0.00 37.08 1.40
292 293 7.553044 GCTCCTTGTATGGTAAGACAAACTATT 59.447 37.037 0.00 0.00 37.08 1.73
293 294 7.048512 GCTCCTTGTATGGTAAGACAAACTAT 58.951 38.462 0.00 0.00 37.08 2.12
294 295 6.212791 AGCTCCTTGTATGGTAAGACAAACTA 59.787 38.462 0.00 0.00 37.08 2.24
295 296 5.013183 AGCTCCTTGTATGGTAAGACAAACT 59.987 40.000 0.00 0.00 37.08 2.66
296 297 5.246307 AGCTCCTTGTATGGTAAGACAAAC 58.754 41.667 0.00 0.00 37.08 2.93
297 298 5.488341 GAGCTCCTTGTATGGTAAGACAAA 58.512 41.667 0.87 0.00 37.08 2.83
298 299 4.081087 GGAGCTCCTTGTATGGTAAGACAA 60.081 45.833 26.25 0.00 35.20 3.18
299 300 3.451178 GGAGCTCCTTGTATGGTAAGACA 59.549 47.826 26.25 0.00 0.00 3.41
300 301 3.451178 TGGAGCTCCTTGTATGGTAAGAC 59.549 47.826 32.28 1.40 36.82 3.01
301 302 3.719871 TGGAGCTCCTTGTATGGTAAGA 58.280 45.455 32.28 5.35 36.82 2.10
302 303 4.080863 ACTTGGAGCTCCTTGTATGGTAAG 60.081 45.833 32.28 23.93 36.82 2.34
303 304 3.844211 ACTTGGAGCTCCTTGTATGGTAA 59.156 43.478 32.28 14.40 36.82 2.85
304 305 3.450904 ACTTGGAGCTCCTTGTATGGTA 58.549 45.455 32.28 6.94 36.82 3.25
305 306 2.269940 ACTTGGAGCTCCTTGTATGGT 58.730 47.619 32.28 16.50 36.82 3.55
306 307 4.162320 TCTTACTTGGAGCTCCTTGTATGG 59.838 45.833 32.28 24.06 36.82 2.74
307 308 5.112686 GTCTTACTTGGAGCTCCTTGTATG 58.887 45.833 32.28 28.67 36.82 2.39
308 309 4.777896 TGTCTTACTTGGAGCTCCTTGTAT 59.222 41.667 32.28 15.92 36.82 2.29
309 310 4.157246 TGTCTTACTTGGAGCTCCTTGTA 58.843 43.478 32.28 27.70 36.82 2.41
310 311 2.972713 TGTCTTACTTGGAGCTCCTTGT 59.027 45.455 32.28 28.65 36.82 3.16
311 312 3.685139 TGTCTTACTTGGAGCTCCTTG 57.315 47.619 32.28 25.03 36.82 3.61
312 313 3.584848 ACATGTCTTACTTGGAGCTCCTT 59.415 43.478 32.28 18.95 36.82 3.36
313 314 3.055530 CACATGTCTTACTTGGAGCTCCT 60.056 47.826 32.28 16.00 36.82 3.69
314 315 3.055819 TCACATGTCTTACTTGGAGCTCC 60.056 47.826 26.78 26.78 0.00 4.70
315 316 4.180057 CTCACATGTCTTACTTGGAGCTC 58.820 47.826 4.71 4.71 0.00 4.09
316 317 3.580458 ACTCACATGTCTTACTTGGAGCT 59.420 43.478 0.00 0.00 30.84 4.09
317 318 3.931578 ACTCACATGTCTTACTTGGAGC 58.068 45.455 0.00 0.00 30.84 4.70
318 319 6.025749 TGTACTCACATGTCTTACTTGGAG 57.974 41.667 0.00 0.00 32.36 3.86
319 320 6.413783 TTGTACTCACATGTCTTACTTGGA 57.586 37.500 0.00 0.00 33.76 3.53
320 321 5.120830 GCTTGTACTCACATGTCTTACTTGG 59.879 44.000 0.00 0.00 33.76 3.61
321 322 5.928839 AGCTTGTACTCACATGTCTTACTTG 59.071 40.000 0.00 0.00 33.76 3.16
322 323 6.102897 AGCTTGTACTCACATGTCTTACTT 57.897 37.500 0.00 0.00 33.76 2.24
323 324 5.730296 AGCTTGTACTCACATGTCTTACT 57.270 39.130 0.00 0.00 33.76 2.24
324 325 7.884816 TTTAGCTTGTACTCACATGTCTTAC 57.115 36.000 0.00 0.00 33.76 2.34
325 326 8.896320 TTTTTAGCTTGTACTCACATGTCTTA 57.104 30.769 0.00 0.00 33.76 2.10
326 327 7.801716 TTTTTAGCTTGTACTCACATGTCTT 57.198 32.000 0.00 0.00 33.76 3.01
327 328 7.986085 ATTTTTAGCTTGTACTCACATGTCT 57.014 32.000 0.00 0.00 33.76 3.41
328 329 9.543018 GTTATTTTTAGCTTGTACTCACATGTC 57.457 33.333 0.00 0.00 33.76 3.06
329 330 8.512138 GGTTATTTTTAGCTTGTACTCACATGT 58.488 33.333 0.00 0.00 33.76 3.21
330 331 8.511321 TGGTTATTTTTAGCTTGTACTCACATG 58.489 33.333 0.00 0.00 33.76 3.21
331 332 8.630054 TGGTTATTTTTAGCTTGTACTCACAT 57.370 30.769 0.00 0.00 33.76 3.21
332 333 8.453238 TTGGTTATTTTTAGCTTGTACTCACA 57.547 30.769 0.00 0.00 0.00 3.58
333 334 9.341899 CATTGGTTATTTTTAGCTTGTACTCAC 57.658 33.333 0.00 0.00 0.00 3.51
334 335 9.290988 TCATTGGTTATTTTTAGCTTGTACTCA 57.709 29.630 0.00 0.00 0.00 3.41
339 340 7.814587 GCTCTTCATTGGTTATTTTTAGCTTGT 59.185 33.333 0.00 0.00 0.00 3.16
340 341 7.814107 TGCTCTTCATTGGTTATTTTTAGCTTG 59.186 33.333 0.00 0.00 0.00 4.01
341 342 7.814587 GTGCTCTTCATTGGTTATTTTTAGCTT 59.185 33.333 0.00 0.00 0.00 3.74
342 343 7.039784 TGTGCTCTTCATTGGTTATTTTTAGCT 60.040 33.333 0.00 0.00 0.00 3.32
343 344 7.090173 TGTGCTCTTCATTGGTTATTTTTAGC 58.910 34.615 0.00 0.00 0.00 3.09
344 345 9.643693 ATTGTGCTCTTCATTGGTTATTTTTAG 57.356 29.630 0.00 0.00 0.00 1.85
345 346 9.638239 GATTGTGCTCTTCATTGGTTATTTTTA 57.362 29.630 0.00 0.00 0.00 1.52
346 347 7.329226 CGATTGTGCTCTTCATTGGTTATTTTT 59.671 33.333 0.00 0.00 0.00 1.94
347 348 6.808212 CGATTGTGCTCTTCATTGGTTATTTT 59.192 34.615 0.00 0.00 0.00 1.82
348 349 6.150976 TCGATTGTGCTCTTCATTGGTTATTT 59.849 34.615 0.00 0.00 0.00 1.40
349 350 5.647658 TCGATTGTGCTCTTCATTGGTTATT 59.352 36.000 0.00 0.00 0.00 1.40
350 351 5.185454 TCGATTGTGCTCTTCATTGGTTAT 58.815 37.500 0.00 0.00 0.00 1.89
351 352 4.574892 TCGATTGTGCTCTTCATTGGTTA 58.425 39.130 0.00 0.00 0.00 2.85
352 353 3.411446 TCGATTGTGCTCTTCATTGGTT 58.589 40.909 0.00 0.00 0.00 3.67
353 354 3.005554 CTCGATTGTGCTCTTCATTGGT 58.994 45.455 0.00 0.00 0.00 3.67
354 355 3.005554 ACTCGATTGTGCTCTTCATTGG 58.994 45.455 0.00 0.00 0.00 3.16
355 356 3.681417 TCACTCGATTGTGCTCTTCATTG 59.319 43.478 2.44 0.00 37.81 2.82
356 357 3.930336 TCACTCGATTGTGCTCTTCATT 58.070 40.909 2.44 0.00 37.81 2.57
357 358 3.519579 CTCACTCGATTGTGCTCTTCAT 58.480 45.455 2.44 0.00 37.81 2.57
358 359 2.928301 GCTCACTCGATTGTGCTCTTCA 60.928 50.000 18.94 0.00 37.81 3.02
359 360 1.658095 GCTCACTCGATTGTGCTCTTC 59.342 52.381 18.94 0.00 37.81 2.87
360 361 1.674221 GGCTCACTCGATTGTGCTCTT 60.674 52.381 23.32 0.00 37.81 2.85
361 362 0.108424 GGCTCACTCGATTGTGCTCT 60.108 55.000 23.32 0.00 37.81 4.09
362 363 0.390340 TGGCTCACTCGATTGTGCTC 60.390 55.000 23.32 16.06 37.81 4.26
363 364 0.035317 TTGGCTCACTCGATTGTGCT 59.965 50.000 23.32 0.00 37.81 4.40
364 365 1.089920 ATTGGCTCACTCGATTGTGC 58.910 50.000 18.25 18.25 37.81 4.57
365 366 4.944962 TTAATTGGCTCACTCGATTGTG 57.055 40.909 2.44 0.40 39.15 3.33
366 367 6.324819 CAATTTAATTGGCTCACTCGATTGT 58.675 36.000 9.63 0.00 36.63 2.71
367 368 6.801367 CAATTTAATTGGCTCACTCGATTG 57.199 37.500 9.63 0.00 36.63 2.67
380 381 7.706159 TCTCGATGTGGATTCCAATTTAATTG 58.294 34.615 7.05 10.46 39.94 2.32
381 382 7.880160 TCTCGATGTGGATTCCAATTTAATT 57.120 32.000 7.05 0.00 34.18 1.40
382 383 8.355169 CAATCTCGATGTGGATTCCAATTTAAT 58.645 33.333 7.05 0.00 34.18 1.40
383 384 7.201812 CCAATCTCGATGTGGATTCCAATTTAA 60.202 37.037 7.05 0.00 34.18 1.52
384 385 6.262944 CCAATCTCGATGTGGATTCCAATTTA 59.737 38.462 7.05 0.00 34.18 1.40
385 386 5.068198 CCAATCTCGATGTGGATTCCAATTT 59.932 40.000 7.05 0.00 34.18 1.82
386 387 4.581824 CCAATCTCGATGTGGATTCCAATT 59.418 41.667 7.05 0.00 34.18 2.32
387 388 4.139786 CCAATCTCGATGTGGATTCCAAT 58.860 43.478 7.05 3.66 34.18 3.16
388 389 3.054434 ACCAATCTCGATGTGGATTCCAA 60.054 43.478 7.05 0.00 34.18 3.53
389 390 2.505407 ACCAATCTCGATGTGGATTCCA 59.495 45.455 14.24 0.00 36.23 3.53
390 391 2.874701 CACCAATCTCGATGTGGATTCC 59.125 50.000 14.24 0.00 36.23 3.01
396 397 4.202151 TGAGTATCCACCAATCTCGATGTG 60.202 45.833 0.00 0.00 0.00 3.21
397 398 3.960755 TGAGTATCCACCAATCTCGATGT 59.039 43.478 0.00 0.00 0.00 3.06
398 399 4.302455 GTGAGTATCCACCAATCTCGATG 58.698 47.826 0.00 0.00 0.00 3.84
399 400 3.004839 CGTGAGTATCCACCAATCTCGAT 59.995 47.826 0.00 0.00 33.67 3.59
400 401 2.357952 CGTGAGTATCCACCAATCTCGA 59.642 50.000 0.00 0.00 33.67 4.04
401 402 2.357952 TCGTGAGTATCCACCAATCTCG 59.642 50.000 0.00 0.00 33.67 4.04
402 403 3.632604 TCTCGTGAGTATCCACCAATCTC 59.367 47.826 0.00 0.00 33.67 2.75
403 404 3.632333 TCTCGTGAGTATCCACCAATCT 58.368 45.455 0.00 0.00 33.67 2.40
404 405 4.363999 CTTCTCGTGAGTATCCACCAATC 58.636 47.826 0.00 0.00 33.67 2.67
405 406 3.430929 GCTTCTCGTGAGTATCCACCAAT 60.431 47.826 0.00 0.00 33.67 3.16
406 407 2.094182 GCTTCTCGTGAGTATCCACCAA 60.094 50.000 0.00 0.00 33.67 3.67
407 408 1.476891 GCTTCTCGTGAGTATCCACCA 59.523 52.381 0.00 0.00 33.67 4.17
408 409 1.751924 AGCTTCTCGTGAGTATCCACC 59.248 52.381 0.00 0.00 33.67 4.61
409 410 3.549221 GCTAGCTTCTCGTGAGTATCCAC 60.549 52.174 7.70 0.00 0.00 4.02
410 411 2.619177 GCTAGCTTCTCGTGAGTATCCA 59.381 50.000 7.70 0.00 0.00 3.41
411 412 2.882137 AGCTAGCTTCTCGTGAGTATCC 59.118 50.000 12.68 0.00 0.00 2.59
412 413 4.561735 AAGCTAGCTTCTCGTGAGTATC 57.438 45.455 24.42 0.00 0.00 2.24
413 414 4.677584 CAAAGCTAGCTTCTCGTGAGTAT 58.322 43.478 29.42 7.77 34.84 2.12
414 415 3.673594 GCAAAGCTAGCTTCTCGTGAGTA 60.674 47.826 29.42 0.00 34.84 2.59
415 416 2.928731 GCAAAGCTAGCTTCTCGTGAGT 60.929 50.000 29.42 9.29 34.84 3.41
416 417 1.658095 GCAAAGCTAGCTTCTCGTGAG 59.342 52.381 29.42 14.09 34.84 3.51
417 418 1.000843 TGCAAAGCTAGCTTCTCGTGA 59.999 47.619 29.42 11.45 34.84 4.35
418 419 1.432514 TGCAAAGCTAGCTTCTCGTG 58.567 50.000 29.42 23.30 34.84 4.35
419 420 2.393271 ATGCAAAGCTAGCTTCTCGT 57.607 45.000 29.42 20.72 34.84 4.18
420 421 4.864916 TTTATGCAAAGCTAGCTTCTCG 57.135 40.909 29.42 20.71 34.84 4.04
421 422 6.846350 TCTTTTTATGCAAAGCTAGCTTCTC 58.154 36.000 29.42 22.39 34.84 2.87
422 423 6.656693 TCTCTTTTTATGCAAAGCTAGCTTCT 59.343 34.615 29.42 16.71 34.84 2.85
423 424 6.846350 TCTCTTTTTATGCAAAGCTAGCTTC 58.154 36.000 29.42 18.46 34.84 3.86
424 425 6.656693 TCTCTCTTTTTATGCAAAGCTAGCTT 59.343 34.615 24.42 24.42 37.98 3.74
425 426 6.176183 TCTCTCTTTTTATGCAAAGCTAGCT 58.824 36.000 12.68 12.68 34.26 3.32
426 427 6.428385 TCTCTCTTTTTATGCAAAGCTAGC 57.572 37.500 6.62 6.62 34.26 3.42
427 428 6.093219 TGCTCTCTCTTTTTATGCAAAGCTAG 59.907 38.462 0.00 0.00 34.26 3.42
428 429 5.939883 TGCTCTCTCTTTTTATGCAAAGCTA 59.060 36.000 0.00 0.00 34.26 3.32
429 430 4.763793 TGCTCTCTCTTTTTATGCAAAGCT 59.236 37.500 0.00 0.00 34.26 3.74
430 431 5.051891 TGCTCTCTCTTTTTATGCAAAGC 57.948 39.130 0.00 0.00 34.26 3.51
431 432 5.638783 CCTGCTCTCTCTTTTTATGCAAAG 58.361 41.667 0.00 0.00 35.39 2.77
432 433 4.082571 GCCTGCTCTCTCTTTTTATGCAAA 60.083 41.667 0.00 0.00 0.00 3.68
433 434 3.441572 GCCTGCTCTCTCTTTTTATGCAA 59.558 43.478 0.00 0.00 0.00 4.08
434 435 3.012518 GCCTGCTCTCTCTTTTTATGCA 58.987 45.455 0.00 0.00 0.00 3.96
435 436 2.357323 GGCCTGCTCTCTCTTTTTATGC 59.643 50.000 0.00 0.00 0.00 3.14
436 437 3.883669 AGGCCTGCTCTCTCTTTTTATG 58.116 45.455 3.11 0.00 0.00 1.90
437 438 4.263683 ACAAGGCCTGCTCTCTCTTTTTAT 60.264 41.667 5.69 0.00 0.00 1.40
438 439 3.073062 ACAAGGCCTGCTCTCTCTTTTTA 59.927 43.478 5.69 0.00 0.00 1.52
439 440 2.158549 ACAAGGCCTGCTCTCTCTTTTT 60.159 45.455 5.69 0.00 0.00 1.94
440 441 1.423161 ACAAGGCCTGCTCTCTCTTTT 59.577 47.619 5.69 0.00 0.00 2.27
441 442 1.063183 ACAAGGCCTGCTCTCTCTTT 58.937 50.000 5.69 0.00 0.00 2.52
442 443 1.944177 TACAAGGCCTGCTCTCTCTT 58.056 50.000 5.69 0.00 0.00 2.85
443 444 2.173126 ATACAAGGCCTGCTCTCTCT 57.827 50.000 5.69 0.00 0.00 3.10
444 445 2.998316 AATACAAGGCCTGCTCTCTC 57.002 50.000 5.69 0.00 0.00 3.20
445 446 5.151454 ACTATAATACAAGGCCTGCTCTCT 58.849 41.667 5.69 0.00 0.00 3.10
446 447 5.476091 ACTATAATACAAGGCCTGCTCTC 57.524 43.478 5.69 0.00 0.00 3.20
447 448 5.482175 CCTACTATAATACAAGGCCTGCTCT 59.518 44.000 5.69 0.00 0.00 4.09
448 449 5.480772 TCCTACTATAATACAAGGCCTGCTC 59.519 44.000 5.69 0.00 0.00 4.26
449 450 5.403512 TCCTACTATAATACAAGGCCTGCT 58.596 41.667 5.69 0.00 0.00 4.24
450 451 5.740290 TCCTACTATAATACAAGGCCTGC 57.260 43.478 5.69 0.00 0.00 4.85
451 452 9.654663 GTAAATCCTACTATAATACAAGGCCTG 57.345 37.037 5.69 2.82 0.00 4.85
452 453 9.617053 AGTAAATCCTACTATAATACAAGGCCT 57.383 33.333 0.00 0.00 0.00 5.19
869 870 2.159226 ACCTAGATGAGCGTGTGTTAGC 60.159 50.000 0.00 0.00 0.00 3.09
870 871 3.119459 ACACCTAGATGAGCGTGTGTTAG 60.119 47.826 0.00 0.00 37.84 2.34
871 872 2.823747 ACACCTAGATGAGCGTGTGTTA 59.176 45.455 0.00 0.00 37.84 2.41
877 878 1.478510 CAAGGACACCTAGATGAGCGT 59.521 52.381 0.00 0.00 31.13 5.07
889 890 3.637432 CGCAGATCTAGATCAAGGACAC 58.363 50.000 29.83 12.48 40.22 3.67
910 920 1.966451 GTATATGGGGTGCGGCTGC 60.966 63.158 11.65 11.65 43.20 5.25
913 923 0.251165 AATGGTATATGGGGTGCGGC 60.251 55.000 0.00 0.00 0.00 6.53
916 926 4.373156 AGAGAAATGGTATATGGGGTGC 57.627 45.455 0.00 0.00 0.00 5.01
918 928 5.456763 GCAGAAGAGAAATGGTATATGGGGT 60.457 44.000 0.00 0.00 0.00 4.95
919 929 5.006386 GCAGAAGAGAAATGGTATATGGGG 58.994 45.833 0.00 0.00 0.00 4.96
922 932 6.539826 TGTGTGCAGAAGAGAAATGGTATATG 59.460 38.462 0.00 0.00 0.00 1.78
923 933 6.540189 GTGTGTGCAGAAGAGAAATGGTATAT 59.460 38.462 0.00 0.00 0.00 0.86
946 966 2.355756 CAGACACAGGGAAACACAAGTG 59.644 50.000 0.00 0.00 0.00 3.16
947 967 2.026262 ACAGACACAGGGAAACACAAGT 60.026 45.455 0.00 0.00 0.00 3.16
982 1013 3.581755 CCATGATTGCTCCAACAGTTTG 58.418 45.455 0.00 0.00 0.00 2.93
983 1014 2.028748 GCCATGATTGCTCCAACAGTTT 60.029 45.455 0.00 0.00 0.00 2.66
985 1016 1.180029 GCCATGATTGCTCCAACAGT 58.820 50.000 0.00 0.00 0.00 3.55
998 1029 2.635714 CAACTGCATACTCAGCCATGA 58.364 47.619 0.00 0.00 37.59 3.07
1062 1093 1.079127 CACCTTGTACCGCTCCAGG 60.079 63.158 0.00 0.00 37.30 4.45
1146 1177 0.177604 CTTGCTCCTCCGCATCTTCT 59.822 55.000 0.00 0.00 40.04 2.85
1162 1193 1.757118 TCCAGATCGGTAAGCTCCTTG 59.243 52.381 0.00 0.00 35.57 3.61
1203 1234 0.397941 CACAGGCCACCTTCTTGAGA 59.602 55.000 5.01 0.00 0.00 3.27
1227 1258 8.029642 ACTTGAATTCGTCAAAGATATCGTTT 57.970 30.769 9.54 0.00 45.67 3.60
1234 1265 7.106239 ACCTCATACTTGAATTCGTCAAAGAT 58.894 34.615 9.54 0.00 45.67 2.40
1337 1368 4.007659 CCTGTACCGAAATATAATGGGGC 58.992 47.826 0.00 0.00 0.00 5.80
1345 1376 2.708861 TGCCCATCCTGTACCGAAATAT 59.291 45.455 0.00 0.00 0.00 1.28
1353 1384 1.065126 AGCTTCTTGCCCATCCTGTAC 60.065 52.381 0.00 0.00 44.23 2.90
1405 1436 5.868454 TCCAAGTTCATTCATCTCTGTGAA 58.132 37.500 0.00 0.00 41.88 3.18
1444 1475 0.469705 TGCTTGGATGGTGGTGCTTT 60.470 50.000 0.00 0.00 0.00 3.51
1521 1552 6.834168 ATCTTCTTCTTCTCTTCGTCTCTT 57.166 37.500 0.00 0.00 0.00 2.85
1545 1576 9.988815 CTAGCTTGATTAACCAATATACTCACT 57.011 33.333 0.00 0.00 0.00 3.41
1561 1592 1.134670 GTCCCTGTCGCTAGCTTGATT 60.135 52.381 13.93 0.00 0.00 2.57
1677 1711 0.321671 CACAACACCATCTCCGGAGT 59.678 55.000 30.17 15.41 0.00 3.85
1744 1778 0.952280 TCACGGTCACTCTCACTGTC 59.048 55.000 0.00 0.00 30.49 3.51
1745 1779 0.669077 GTCACGGTCACTCTCACTGT 59.331 55.000 0.00 0.00 33.36 3.55
1754 1788 0.238289 CAATGCCTTGTCACGGTCAC 59.762 55.000 0.00 0.00 0.00 3.67
1758 1792 1.210931 CTGCAATGCCTTGTCACGG 59.789 57.895 1.53 0.00 34.69 4.94
1804 1838 5.051039 CGTCATCCAACACAATAAGGTATCG 60.051 44.000 0.00 0.00 0.00 2.92
1827 1861 4.122046 TGTCAGCATCTTCATTCCATACG 58.878 43.478 0.00 0.00 0.00 3.06
1882 1916 1.073025 CTGCACTACCCTTGCCACA 59.927 57.895 0.00 0.00 39.39 4.17
1937 1971 6.854892 GCTATAATCAACACACATCTTCATGC 59.145 38.462 0.00 0.00 32.57 4.06
1938 1972 7.012610 TGGCTATAATCAACACACATCTTCATG 59.987 37.037 0.00 0.00 35.92 3.07
1957 1993 7.892609 TGTAGCTTTTCGAGATTATGGCTATA 58.107 34.615 0.00 0.00 34.36 1.31
2035 2071 9.926158 CATGTTACTTATCTCAGAAGCATCTAT 57.074 33.333 0.00 0.00 33.50 1.98
2036 2072 8.363390 CCATGTTACTTATCTCAGAAGCATCTA 58.637 37.037 0.00 0.00 33.50 1.98
2044 2080 7.676004 TGTTCAACCATGTTACTTATCTCAGA 58.324 34.615 0.00 0.00 0.00 3.27
2050 2086 9.383519 CAGTATCTGTTCAACCATGTTACTTAT 57.616 33.333 0.00 0.00 0.00 1.73
2056 2092 4.216257 GTGCAGTATCTGTTCAACCATGTT 59.784 41.667 0.00 0.00 33.43 2.71
2077 2113 3.746949 GAGAGCCCCCGCATCTGTG 62.747 68.421 0.00 0.00 37.52 3.66
2085 2121 2.066999 AGCTAAAGGAGAGCCCCCG 61.067 63.158 0.00 0.00 41.06 5.73
2118 2154 4.993029 AGTCTTGGTACTCAGCATAGAC 57.007 45.455 0.00 0.00 38.79 2.59
2199 2235 7.038659 AGCTGAGCTTGAGTATAAGTAAAGTG 58.961 38.462 0.00 0.00 33.89 3.16
2304 2428 7.040478 TGTGCCATCCATAGCTGTATTAAAATC 60.040 37.037 0.00 0.00 0.00 2.17
2313 2437 1.491754 TCATGTGCCATCCATAGCTGT 59.508 47.619 0.00 0.00 0.00 4.40
2377 2501 6.861065 AGTTAGCTCGTCAAAAATTTCTCA 57.139 33.333 0.00 0.00 0.00 3.27
2460 2599 5.638596 TCTTGCATACTGTTCTAGAACGA 57.361 39.130 26.35 16.55 43.94 3.85
2511 2656 5.025453 AGGCAATCTTTTCCCATAACACAT 58.975 37.500 0.00 0.00 0.00 3.21
2513 2658 5.405935 AAGGCAATCTTTTCCCATAACAC 57.594 39.130 0.00 0.00 29.99 3.32
2538 2683 6.263168 CCTTTTGATTAGGCCTACCAACTATG 59.737 42.308 20.59 12.22 39.06 2.23
2546 2691 3.879892 CAGCTCCTTTTGATTAGGCCTAC 59.120 47.826 13.46 2.16 32.59 3.18
2584 2729 1.291132 GATAAGAACAGGTGGCGAGC 58.709 55.000 0.00 0.00 0.00 5.03
2600 2745 3.442625 AGTTCCGATGACACGACTTGATA 59.557 43.478 0.00 0.00 35.09 2.15
2605 2750 1.535833 AGAGTTCCGATGACACGACT 58.464 50.000 0.00 0.00 35.09 4.18
2606 2751 2.349297 AAGAGTTCCGATGACACGAC 57.651 50.000 0.00 0.00 35.09 4.34
2611 2756 4.253685 TCATCCAAAAGAGTTCCGATGAC 58.746 43.478 0.00 0.00 33.12 3.06
2685 2830 0.984995 GTACTGGACCAAGAGGCCTT 59.015 55.000 6.77 0.00 39.06 4.35
2702 2847 3.633525 ACTGTACTTCGACAAGTGTGGTA 59.366 43.478 0.00 0.00 43.17 3.25
2760 2905 2.747855 CTTGGCCGAAGTGGGAGC 60.748 66.667 0.00 0.00 38.63 4.70
2763 2908 4.659172 TGCCTTGGCCGAAGTGGG 62.659 66.667 9.35 0.00 38.63 4.61
2772 2923 0.313987 GGTGTTGTAAGTGCCTTGGC 59.686 55.000 4.43 4.43 0.00 4.52
2820 2974 4.021916 CCTTGGGAAGCTCTTTGATCAAT 58.978 43.478 9.40 0.00 0.00 2.57
2878 3032 6.140737 CGACAAAGTCTCTTGCAATTACAAAC 59.859 38.462 0.00 0.00 0.00 2.93
2922 3076 6.495181 AGAGGTGACGGAGATTTGTCATATAT 59.505 38.462 0.00 0.00 45.90 0.86
2950 3104 4.635223 TCTAATGATGTGCATCCACTAGC 58.365 43.478 9.39 0.00 42.54 3.42
2970 3124 1.601171 GTCTGGAGGCATGCACTCT 59.399 57.895 25.57 13.74 35.34 3.24
2991 3145 1.072331 TGAAGAGAAGTGAGTTGCCCC 59.928 52.381 0.00 0.00 0.00 5.80
3070 3224 2.890311 CACCACCAAGATTTAAGCCACA 59.110 45.455 0.00 0.00 0.00 4.17
3072 3226 3.420893 CTCACCACCAAGATTTAAGCCA 58.579 45.455 0.00 0.00 0.00 4.75
3074 3228 3.084786 AGCTCACCACCAAGATTTAAGC 58.915 45.455 0.00 0.00 0.00 3.09
3093 3247 8.087750 ACATATTCAAGACAAGATAGCTCTAGC 58.912 37.037 0.00 0.00 42.49 3.42
3163 3317 9.039870 CCATTTAAGAGATAGATGTGTGAGTTC 57.960 37.037 0.00 0.00 0.00 3.01
3175 3329 7.384660 GCTGTCATCACTCCATTTAAGAGATAG 59.615 40.741 0.00 0.00 35.27 2.08
3204 3358 2.418746 CCTATGTTGGTCCAGTTCCTCG 60.419 54.545 0.00 0.00 0.00 4.63
3282 3436 3.244582 TGGGAAAGCAGTACCTCTGTAA 58.755 45.455 0.00 0.00 45.23 2.41
3320 3474 5.474532 TCAGTCAAATGCTGCAGAAAAGTAT 59.525 36.000 20.43 0.00 34.21 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.