Multiple sequence alignment - TraesCS1D01G438800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G438800 chr1D 100.000 3355 0 0 600 3954 485490578 485487224 0.000000e+00 6196.0
1 TraesCS1D01G438800 chr1D 100.000 268 0 0 1 268 485491177 485490910 2.740000e-136 496.0
2 TraesCS1D01G438800 chr1D 81.607 473 82 3 1497 1965 485554958 485555429 1.720000e-103 387.0
3 TraesCS1D01G438800 chr1D 91.760 267 12 5 3 259 11804128 11804394 2.900000e-96 363.0
4 TraesCS1D01G438800 chr1D 79.388 490 96 5 1480 1965 485551267 485551755 1.360000e-89 340.0
5 TraesCS1D01G438800 chr1B 93.994 2464 112 18 885 3329 675791526 675789080 0.000000e+00 3698.0
6 TraesCS1D01G438800 chr1B 90.000 620 41 6 3339 3954 675783302 675782700 0.000000e+00 782.0
7 TraesCS1D01G438800 chr1B 80.612 490 90 3 1480 1965 676074508 676074996 1.340000e-99 374.0
8 TraesCS1D01G438800 chr1A 94.798 2326 80 13 759 3049 582695622 582693303 0.000000e+00 3587.0
9 TraesCS1D01G438800 chr1A 86.431 538 39 18 3042 3575 582692113 582691606 3.450000e-155 558.0
10 TraesCS1D01G438800 chr1A 82.105 475 82 1 1482 1953 582841626 582842100 1.710000e-108 403.0
11 TraesCS1D01G438800 chr1A 81.020 490 88 3 1480 1965 582862284 582862772 6.200000e-103 385.0
12 TraesCS1D01G438800 chr1A 94.309 246 13 1 3709 3954 582682821 582682577 3.730000e-100 375.0
13 TraesCS1D01G438800 chr1A 79.874 477 93 2 1480 1953 582845038 582845514 2.920000e-91 346.0
14 TraesCS1D01G438800 chr1A 79.573 328 60 7 2133 2459 582859066 582859387 1.110000e-55 228.0
15 TraesCS1D01G438800 chr7A 94.915 236 11 1 1 235 460311393 460311628 6.240000e-98 368.0
16 TraesCS1D01G438800 chr7A 80.878 319 55 6 1639 1954 680629307 680628992 3.050000e-61 246.0
17 TraesCS1D01G438800 chr7A 91.250 80 4 3 633 711 673310835 673310912 5.400000e-19 106.0
18 TraesCS1D01G438800 chr3D 94.915 236 11 1 1 235 452573418 452573183 6.240000e-98 368.0
19 TraesCS1D01G438800 chr7D 94.492 236 12 1 1 235 593250680 593250915 2.900000e-96 363.0
20 TraesCS1D01G438800 chr7B 94.492 236 12 1 1 235 738782541 738782776 2.900000e-96 363.0
21 TraesCS1D01G438800 chrUn 91.450 269 13 5 1 259 51420400 51420668 1.040000e-95 361.0
22 TraesCS1D01G438800 chrUn 92.593 81 3 3 633 712 444000 444078 3.230000e-21 113.0
23 TraesCS1D01G438800 chrUn 91.139 79 4 3 635 712 371754 371830 1.940000e-18 104.0
24 TraesCS1D01G438800 chrUn 91.139 79 4 3 635 712 369044731 369044655 1.940000e-18 104.0
25 TraesCS1D01G438800 chr6D 94.068 236 13 1 1 235 46942958 46943193 1.350000e-94 357.0
26 TraesCS1D01G438800 chr2A 94.068 236 13 1 1 235 13066576 13066811 1.350000e-94 357.0
27 TraesCS1D01G438800 chr5D 90.706 269 16 5 1 262 452555395 452555129 2.260000e-92 350.0
28 TraesCS1D01G438800 chr5D 81.373 306 53 3 2161 2466 510059166 510059467 3.050000e-61 246.0
29 TraesCS1D01G438800 chr5B 84.758 269 31 6 1 259 8413573 8413305 1.090000e-65 261.0
30 TraesCS1D01G438800 chr5B 83.981 206 33 0 2161 2366 641043561 641043766 8.670000e-47 198.0
31 TraesCS1D01G438800 chr5A 81.271 299 53 2 2161 2459 638068901 638068606 5.110000e-59 239.0
32 TraesCS1D01G438800 chr3A 93.243 74 4 1 638 711 83595395 83595467 1.500000e-19 108.0
33 TraesCS1D01G438800 chr6A 89.157 83 4 3 633 712 5545689 5545769 9.040000e-17 99.0
34 TraesCS1D01G438800 chr2B 97.561 41 0 1 670 710 26757718 26757757 7.090000e-08 69.4
35 TraesCS1D01G438800 chr2D 100.000 28 0 0 232 259 20866489 20866516 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G438800 chr1D 485487224 485491177 3953 True 3346.0 6196 100.0000 1 3954 2 chr1D.!!$R1 3953
1 TraesCS1D01G438800 chr1D 485551267 485555429 4162 False 363.5 387 80.4975 1480 1965 2 chr1D.!!$F2 485
2 TraesCS1D01G438800 chr1B 675789080 675791526 2446 True 3698.0 3698 93.9940 885 3329 1 chr1B.!!$R2 2444
3 TraesCS1D01G438800 chr1B 675782700 675783302 602 True 782.0 782 90.0000 3339 3954 1 chr1B.!!$R1 615
4 TraesCS1D01G438800 chr1A 582691606 582695622 4016 True 2072.5 3587 90.6145 759 3575 2 chr1A.!!$R2 2816
5 TraesCS1D01G438800 chr1A 582841626 582845514 3888 False 374.5 403 80.9895 1480 1953 2 chr1A.!!$F1 473
6 TraesCS1D01G438800 chr1A 582859066 582862772 3706 False 306.5 385 80.2965 1480 2459 2 chr1A.!!$F2 979

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.027979 TGTTCGTCGTTCGTCTTCGT 59.972 50.000 0.00 0.0 40.80 3.85 F
59 60 0.027979 TCGTTCGTCTTCGTTCGTGT 59.972 50.000 0.00 0.0 38.33 4.49 F
162 163 0.031721 ACGACGACTTCCCAACTGTC 59.968 55.000 0.00 0.0 0.00 3.51 F
637 638 0.038892 GTGCAATGTGTTCCTGGCTG 60.039 55.000 0.00 0.0 0.00 4.85 F
638 639 0.467844 TGCAATGTGTTCCTGGCTGT 60.468 50.000 0.00 0.0 0.00 4.40 F
978 1007 1.144565 CGATCGGCTTCTCAGTGCTG 61.145 60.000 7.38 0.0 36.94 4.41 F
998 1027 1.154016 CGTCGATCAAGTCCTGCGT 60.154 57.895 0.00 0.0 0.00 5.24 F
1944 1980 1.244816 TCGTTGAGGACATCGACTGT 58.755 50.000 5.97 0.0 41.31 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1969 2005 2.279784 CCTCTCGCCGCCTTGATC 60.280 66.667 0.00 0.00 0.00 2.92 R
1991 2027 2.743928 CGGTGAAGCTGTGCCTCC 60.744 66.667 0.00 0.00 0.00 4.30 R
2109 2166 2.951642 CCGGAAGCATTGACATATGGTT 59.048 45.455 7.80 12.01 45.86 3.67 R
2243 2304 0.389948 CGAGCCGCTCCTTGTAGTTT 60.390 55.000 14.85 0.00 0.00 2.66 R
2499 2560 0.988063 ACTTCTCCCCTCTTTGCCTC 59.012 55.000 0.00 0.00 0.00 4.70 R
2525 2586 3.634568 TGATGTTTTACGCCCTTGTTG 57.365 42.857 0.00 0.00 0.00 3.33 R
2537 2598 5.816777 CACCTTGTTGTTTCCATGATGTTTT 59.183 36.000 0.00 0.00 0.00 2.43 R
3592 5323 2.049185 TTGTGTGTGTGGTGGTGGC 61.049 57.895 0.00 0.00 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.799753 CGGCGGATCTGTCTTTGG 58.200 61.111 4.31 0.00 0.00 3.28
18 19 1.079127 CGGCGGATCTGTCTTTGGT 60.079 57.895 4.31 0.00 0.00 3.67
19 20 1.361668 CGGCGGATCTGTCTTTGGTG 61.362 60.000 4.31 0.00 0.00 4.17
20 21 1.026718 GGCGGATCTGTCTTTGGTGG 61.027 60.000 2.89 0.00 0.00 4.61
21 22 0.036388 GCGGATCTGTCTTTGGTGGA 60.036 55.000 2.89 0.00 0.00 4.02
22 23 1.407437 GCGGATCTGTCTTTGGTGGAT 60.407 52.381 2.89 0.00 0.00 3.41
23 24 2.941415 GCGGATCTGTCTTTGGTGGATT 60.941 50.000 2.89 0.00 0.00 3.01
24 25 3.347216 CGGATCTGTCTTTGGTGGATTT 58.653 45.455 0.00 0.00 0.00 2.17
25 26 3.127548 CGGATCTGTCTTTGGTGGATTTG 59.872 47.826 0.00 0.00 0.00 2.32
26 27 3.119352 GGATCTGTCTTTGGTGGATTTGC 60.119 47.826 0.00 0.00 0.00 3.68
27 28 3.228188 TCTGTCTTTGGTGGATTTGCT 57.772 42.857 0.00 0.00 0.00 3.91
28 29 3.149196 TCTGTCTTTGGTGGATTTGCTC 58.851 45.455 0.00 0.00 0.00 4.26
29 30 1.879380 TGTCTTTGGTGGATTTGCTCG 59.121 47.619 0.00 0.00 0.00 5.03
30 31 1.200020 GTCTTTGGTGGATTTGCTCGG 59.800 52.381 0.00 0.00 0.00 4.63
31 32 1.073125 TCTTTGGTGGATTTGCTCGGA 59.927 47.619 0.00 0.00 0.00 4.55
32 33 2.094675 CTTTGGTGGATTTGCTCGGAT 58.905 47.619 0.00 0.00 0.00 4.18
33 34 1.750193 TTGGTGGATTTGCTCGGATC 58.250 50.000 0.00 0.00 0.00 3.36
34 35 0.911769 TGGTGGATTTGCTCGGATCT 59.088 50.000 0.00 0.00 0.00 2.75
35 36 1.303309 GGTGGATTTGCTCGGATCTG 58.697 55.000 0.00 0.00 0.00 2.90
36 37 1.407437 GGTGGATTTGCTCGGATCTGT 60.407 52.381 0.42 0.00 0.00 3.41
37 38 2.359900 GTGGATTTGCTCGGATCTGTT 58.640 47.619 0.42 0.00 0.00 3.16
38 39 2.352960 GTGGATTTGCTCGGATCTGTTC 59.647 50.000 0.42 0.00 0.00 3.18
39 40 1.594862 GGATTTGCTCGGATCTGTTCG 59.405 52.381 0.42 0.00 0.00 3.95
40 41 2.271800 GATTTGCTCGGATCTGTTCGT 58.728 47.619 0.42 0.00 0.00 3.85
41 42 1.710013 TTTGCTCGGATCTGTTCGTC 58.290 50.000 0.42 0.00 0.00 4.20
42 43 0.456142 TTGCTCGGATCTGTTCGTCG 60.456 55.000 0.42 0.00 0.00 5.12
43 44 1.136984 GCTCGGATCTGTTCGTCGT 59.863 57.895 0.42 0.00 0.00 4.34
44 45 0.456312 GCTCGGATCTGTTCGTCGTT 60.456 55.000 0.42 0.00 0.00 3.85
45 46 1.536149 CTCGGATCTGTTCGTCGTTC 58.464 55.000 0.42 0.00 0.00 3.95
46 47 0.179207 TCGGATCTGTTCGTCGTTCG 60.179 55.000 0.42 0.00 41.41 3.95
47 48 0.453950 CGGATCTGTTCGTCGTTCGT 60.454 55.000 0.00 0.00 40.80 3.85
48 49 1.257539 GGATCTGTTCGTCGTTCGTC 58.742 55.000 0.00 0.00 40.80 4.20
49 50 1.135746 GGATCTGTTCGTCGTTCGTCT 60.136 52.381 0.00 0.00 40.80 4.18
50 51 2.582687 GATCTGTTCGTCGTTCGTCTT 58.417 47.619 0.00 0.00 40.80 3.01
51 52 2.028287 TCTGTTCGTCGTTCGTCTTC 57.972 50.000 0.00 0.00 40.80 2.87
52 53 0.695943 CTGTTCGTCGTTCGTCTTCG 59.304 55.000 0.00 0.00 40.80 3.79
53 54 0.027979 TGTTCGTCGTTCGTCTTCGT 59.972 50.000 0.00 0.00 40.80 3.85
54 55 1.115639 GTTCGTCGTTCGTCTTCGTT 58.884 50.000 0.00 0.00 40.80 3.85
55 56 1.119672 GTTCGTCGTTCGTCTTCGTTC 59.880 52.381 0.00 0.00 40.80 3.95
56 57 0.719194 TCGTCGTTCGTCTTCGTTCG 60.719 55.000 0.00 0.00 40.80 3.95
57 58 0.988825 CGTCGTTCGTCTTCGTTCGT 60.989 55.000 0.00 0.00 38.33 3.85
58 59 0.424920 GTCGTTCGTCTTCGTTCGTG 59.575 55.000 0.00 0.00 38.33 4.35
59 60 0.027979 TCGTTCGTCTTCGTTCGTGT 59.972 50.000 0.00 0.00 38.33 4.49
60 61 0.156035 CGTTCGTCTTCGTTCGTGTG 59.844 55.000 0.00 0.00 38.33 3.82
61 62 1.194495 GTTCGTCTTCGTTCGTGTGT 58.806 50.000 0.00 0.00 38.33 3.72
62 63 1.186623 GTTCGTCTTCGTTCGTGTGTC 59.813 52.381 0.00 0.00 38.33 3.67
63 64 0.659427 TCGTCTTCGTTCGTGTGTCT 59.341 50.000 0.00 0.00 38.33 3.41
64 65 1.064505 TCGTCTTCGTTCGTGTGTCTT 59.935 47.619 0.00 0.00 38.33 3.01
65 66 1.447201 CGTCTTCGTTCGTGTGTCTTC 59.553 52.381 0.00 0.00 0.00 2.87
66 67 2.456989 GTCTTCGTTCGTGTGTCTTCA 58.543 47.619 0.00 0.00 0.00 3.02
67 68 2.468040 GTCTTCGTTCGTGTGTCTTCAG 59.532 50.000 0.00 0.00 0.00 3.02
68 69 1.787155 CTTCGTTCGTGTGTCTTCAGG 59.213 52.381 0.00 0.00 0.00 3.86
69 70 0.742505 TCGTTCGTGTGTCTTCAGGT 59.257 50.000 0.00 0.00 0.00 4.00
70 71 1.135527 TCGTTCGTGTGTCTTCAGGTT 59.864 47.619 0.00 0.00 0.00 3.50
71 72 1.257936 CGTTCGTGTGTCTTCAGGTTG 59.742 52.381 0.00 0.00 0.00 3.77
72 73 1.597663 GTTCGTGTGTCTTCAGGTTGG 59.402 52.381 0.00 0.00 0.00 3.77
73 74 1.116308 TCGTGTGTCTTCAGGTTGGA 58.884 50.000 0.00 0.00 0.00 3.53
74 75 1.691976 TCGTGTGTCTTCAGGTTGGAT 59.308 47.619 0.00 0.00 0.00 3.41
75 76 2.069273 CGTGTGTCTTCAGGTTGGATC 58.931 52.381 0.00 0.00 0.00 3.36
76 77 2.427506 GTGTGTCTTCAGGTTGGATCC 58.572 52.381 4.20 4.20 0.00 3.36
77 78 2.039084 GTGTGTCTTCAGGTTGGATCCT 59.961 50.000 14.23 0.00 38.51 3.24
78 79 2.711009 TGTGTCTTCAGGTTGGATCCTT 59.289 45.455 14.23 0.00 35.37 3.36
79 80 3.138283 TGTGTCTTCAGGTTGGATCCTTT 59.862 43.478 14.23 0.00 35.37 3.11
80 81 4.145052 GTGTCTTCAGGTTGGATCCTTTT 58.855 43.478 14.23 0.00 35.37 2.27
81 82 4.022849 GTGTCTTCAGGTTGGATCCTTTTG 60.023 45.833 14.23 6.55 35.37 2.44
82 83 4.141274 TGTCTTCAGGTTGGATCCTTTTGA 60.141 41.667 14.23 8.79 35.37 2.69
83 84 5.012893 GTCTTCAGGTTGGATCCTTTTGAT 58.987 41.667 14.23 0.00 35.37 2.57
97 98 8.364129 GATCCTTTTGATCTACACTCTTCATC 57.636 38.462 0.00 0.00 45.46 2.92
98 99 7.487822 TCCTTTTGATCTACACTCTTCATCT 57.512 36.000 0.00 0.00 0.00 2.90
99 100 7.326454 TCCTTTTGATCTACACTCTTCATCTG 58.674 38.462 0.00 0.00 0.00 2.90
100 101 7.038729 TCCTTTTGATCTACACTCTTCATCTGT 60.039 37.037 0.00 0.00 0.00 3.41
101 102 7.064371 CCTTTTGATCTACACTCTTCATCTGTG 59.936 40.741 0.00 0.00 37.67 3.66
102 103 5.588958 TGATCTACACTCTTCATCTGTGG 57.411 43.478 0.00 0.00 36.16 4.17
103 104 3.876274 TCTACACTCTTCATCTGTGGC 57.124 47.619 0.00 0.00 36.16 5.01
104 105 2.164422 TCTACACTCTTCATCTGTGGCG 59.836 50.000 0.00 0.00 36.16 5.69
105 106 0.036952 ACACTCTTCATCTGTGGCGG 60.037 55.000 0.00 0.00 36.16 6.13
106 107 0.036952 CACTCTTCATCTGTGGCGGT 60.037 55.000 0.00 0.00 0.00 5.68
107 108 0.687354 ACTCTTCATCTGTGGCGGTT 59.313 50.000 0.00 0.00 0.00 4.44
108 109 1.081892 CTCTTCATCTGTGGCGGTTG 58.918 55.000 0.00 0.00 0.00 3.77
109 110 0.955428 TCTTCATCTGTGGCGGTTGC 60.955 55.000 0.00 0.00 41.71 4.17
110 111 0.957395 CTTCATCTGTGGCGGTTGCT 60.957 55.000 0.00 0.00 42.25 3.91
111 112 1.236616 TTCATCTGTGGCGGTTGCTG 61.237 55.000 0.00 0.00 42.25 4.41
112 113 1.968017 CATCTGTGGCGGTTGCTGT 60.968 57.895 0.00 0.00 42.25 4.40
113 114 1.228245 ATCTGTGGCGGTTGCTGTT 60.228 52.632 0.00 0.00 42.25 3.16
114 115 1.237285 ATCTGTGGCGGTTGCTGTTC 61.237 55.000 0.00 0.00 42.25 3.18
115 116 1.893808 CTGTGGCGGTTGCTGTTCT 60.894 57.895 0.00 0.00 42.25 3.01
116 117 2.121564 CTGTGGCGGTTGCTGTTCTG 62.122 60.000 0.00 0.00 42.25 3.02
117 118 2.594303 TGGCGGTTGCTGTTCTGG 60.594 61.111 0.00 0.00 42.25 3.86
118 119 2.594592 GGCGGTTGCTGTTCTGGT 60.595 61.111 0.00 0.00 42.25 4.00
119 120 2.639286 GCGGTTGCTGTTCTGGTG 59.361 61.111 0.00 0.00 38.39 4.17
120 121 2.639286 CGGTTGCTGTTCTGGTGC 59.361 61.111 0.00 0.00 0.00 5.01
121 122 2.639286 GGTTGCTGTTCTGGTGCG 59.361 61.111 0.00 0.00 0.00 5.34
122 123 2.186826 GGTTGCTGTTCTGGTGCGT 61.187 57.895 0.00 0.00 0.00 5.24
123 124 1.279840 GTTGCTGTTCTGGTGCGTC 59.720 57.895 0.00 0.00 0.00 5.19
124 125 2.243957 TTGCTGTTCTGGTGCGTCG 61.244 57.895 0.00 0.00 0.00 5.12
125 126 3.414700 GCTGTTCTGGTGCGTCGG 61.415 66.667 0.00 0.00 0.00 4.79
126 127 2.029073 CTGTTCTGGTGCGTCGGT 59.971 61.111 0.00 0.00 0.00 4.69
127 128 1.594293 CTGTTCTGGTGCGTCGGTT 60.594 57.895 0.00 0.00 0.00 4.44
128 129 1.153329 TGTTCTGGTGCGTCGGTTT 60.153 52.632 0.00 0.00 0.00 3.27
129 130 0.745128 TGTTCTGGTGCGTCGGTTTT 60.745 50.000 0.00 0.00 0.00 2.43
130 131 1.219646 GTTCTGGTGCGTCGGTTTTA 58.780 50.000 0.00 0.00 0.00 1.52
131 132 1.802365 GTTCTGGTGCGTCGGTTTTAT 59.198 47.619 0.00 0.00 0.00 1.40
132 133 1.434555 TCTGGTGCGTCGGTTTTATG 58.565 50.000 0.00 0.00 0.00 1.90
133 134 0.446222 CTGGTGCGTCGGTTTTATGG 59.554 55.000 0.00 0.00 0.00 2.74
134 135 0.956410 TGGTGCGTCGGTTTTATGGG 60.956 55.000 0.00 0.00 0.00 4.00
135 136 0.674269 GGTGCGTCGGTTTTATGGGA 60.674 55.000 0.00 0.00 0.00 4.37
136 137 0.445043 GTGCGTCGGTTTTATGGGAC 59.555 55.000 0.00 0.00 0.00 4.46
137 138 0.674269 TGCGTCGGTTTTATGGGACC 60.674 55.000 0.00 0.00 0.00 4.46
138 139 0.392060 GCGTCGGTTTTATGGGACCT 60.392 55.000 0.00 0.00 33.69 3.85
139 140 1.947212 GCGTCGGTTTTATGGGACCTT 60.947 52.381 0.00 0.00 33.69 3.50
140 141 2.677613 GCGTCGGTTTTATGGGACCTTA 60.678 50.000 0.00 0.00 33.69 2.69
141 142 3.192466 CGTCGGTTTTATGGGACCTTAG 58.808 50.000 0.00 0.00 33.69 2.18
142 143 2.941064 GTCGGTTTTATGGGACCTTAGC 59.059 50.000 0.00 0.00 33.69 3.09
143 144 2.572556 TCGGTTTTATGGGACCTTAGCA 59.427 45.455 0.00 0.00 33.69 3.49
144 145 2.681344 CGGTTTTATGGGACCTTAGCAC 59.319 50.000 0.00 0.00 33.69 4.40
145 146 2.681344 GGTTTTATGGGACCTTAGCACG 59.319 50.000 0.00 0.00 33.08 5.34
146 147 3.602483 GTTTTATGGGACCTTAGCACGA 58.398 45.455 0.00 0.00 0.00 4.35
147 148 2.973694 TTATGGGACCTTAGCACGAC 57.026 50.000 0.00 0.00 0.00 4.34
148 149 0.742505 TATGGGACCTTAGCACGACG 59.257 55.000 0.00 0.00 0.00 5.12
149 150 0.968901 ATGGGACCTTAGCACGACGA 60.969 55.000 0.00 0.00 0.00 4.20
150 151 1.153881 GGGACCTTAGCACGACGAC 60.154 63.158 0.00 0.00 0.00 4.34
151 152 1.593296 GGGACCTTAGCACGACGACT 61.593 60.000 0.00 0.59 0.00 4.18
152 153 0.243095 GGACCTTAGCACGACGACTT 59.757 55.000 0.00 0.00 0.00 3.01
153 154 1.615502 GACCTTAGCACGACGACTTC 58.384 55.000 0.00 0.00 0.00 3.01
154 155 0.243095 ACCTTAGCACGACGACTTCC 59.757 55.000 0.00 0.00 0.00 3.46
155 156 0.458025 CCTTAGCACGACGACTTCCC 60.458 60.000 0.00 0.00 0.00 3.97
156 157 0.242825 CTTAGCACGACGACTTCCCA 59.757 55.000 0.00 0.00 0.00 4.37
157 158 0.675083 TTAGCACGACGACTTCCCAA 59.325 50.000 0.00 0.00 0.00 4.12
158 159 0.038892 TAGCACGACGACTTCCCAAC 60.039 55.000 0.00 0.00 0.00 3.77
159 160 1.300697 GCACGACGACTTCCCAACT 60.301 57.895 0.00 0.00 0.00 3.16
160 161 1.557443 GCACGACGACTTCCCAACTG 61.557 60.000 0.00 0.00 0.00 3.16
161 162 0.249322 CACGACGACTTCCCAACTGT 60.249 55.000 0.00 0.00 0.00 3.55
162 163 0.031721 ACGACGACTTCCCAACTGTC 59.968 55.000 0.00 0.00 0.00 3.51
163 164 0.314302 CGACGACTTCCCAACTGTCT 59.686 55.000 0.00 0.00 0.00 3.41
164 165 1.538512 CGACGACTTCCCAACTGTCTA 59.461 52.381 0.00 0.00 0.00 2.59
165 166 2.163815 CGACGACTTCCCAACTGTCTAT 59.836 50.000 0.00 0.00 0.00 1.98
166 167 3.367087 CGACGACTTCCCAACTGTCTATT 60.367 47.826 0.00 0.00 0.00 1.73
167 168 4.142534 CGACGACTTCCCAACTGTCTATTA 60.143 45.833 0.00 0.00 0.00 0.98
168 169 5.069501 ACGACTTCCCAACTGTCTATTAC 57.930 43.478 0.00 0.00 0.00 1.89
169 170 4.525487 ACGACTTCCCAACTGTCTATTACA 59.475 41.667 0.00 0.00 36.42 2.41
170 171 5.011329 ACGACTTCCCAACTGTCTATTACAA 59.989 40.000 0.00 0.00 37.74 2.41
171 172 5.347907 CGACTTCCCAACTGTCTATTACAAC 59.652 44.000 0.00 0.00 37.74 3.32
172 173 6.182507 ACTTCCCAACTGTCTATTACAACA 57.817 37.500 0.00 0.00 37.74 3.33
173 174 6.597562 ACTTCCCAACTGTCTATTACAACAA 58.402 36.000 0.00 0.00 37.74 2.83
174 175 6.710744 ACTTCCCAACTGTCTATTACAACAAG 59.289 38.462 0.00 0.00 37.74 3.16
175 176 5.556915 TCCCAACTGTCTATTACAACAAGG 58.443 41.667 0.00 0.00 37.74 3.61
176 177 5.072600 TCCCAACTGTCTATTACAACAAGGT 59.927 40.000 0.00 0.00 37.74 3.50
177 178 5.768164 CCCAACTGTCTATTACAACAAGGTT 59.232 40.000 0.00 0.00 37.74 3.50
178 179 6.293955 CCCAACTGTCTATTACAACAAGGTTG 60.294 42.308 7.51 7.51 38.24 3.77
179 180 6.293955 CCAACTGTCTATTACAACAAGGTTGG 60.294 42.308 13.09 10.38 45.37 3.77
180 181 4.760204 ACTGTCTATTACAACAAGGTTGGC 59.240 41.667 13.09 0.00 37.74 4.52
181 182 4.076394 TGTCTATTACAACAAGGTTGGCC 58.924 43.478 13.09 0.00 34.29 5.36
182 183 3.442625 GTCTATTACAACAAGGTTGGCCC 59.557 47.826 13.09 0.00 34.57 5.80
183 184 1.253100 ATTACAACAAGGTTGGCCCG 58.747 50.000 13.09 0.00 38.74 6.13
184 185 0.824182 TTACAACAAGGTTGGCCCGG 60.824 55.000 13.09 0.00 38.74 5.73
185 186 3.989787 CAACAAGGTTGGCCCGGC 61.990 66.667 0.00 0.00 38.74 6.13
186 187 4.218686 AACAAGGTTGGCCCGGCT 62.219 61.111 9.86 0.00 38.74 5.52
187 188 4.660938 ACAAGGTTGGCCCGGCTC 62.661 66.667 9.86 0.00 38.74 4.70
206 207 3.866582 GGCGAGGGAGGGGTGATG 61.867 72.222 0.00 0.00 0.00 3.07
207 208 2.764128 GCGAGGGAGGGGTGATGA 60.764 66.667 0.00 0.00 0.00 2.92
208 209 3.095347 GCGAGGGAGGGGTGATGAC 62.095 68.421 0.00 0.00 0.00 3.06
209 210 1.685765 CGAGGGAGGGGTGATGACA 60.686 63.158 0.00 0.00 0.00 3.58
210 211 1.680522 CGAGGGAGGGGTGATGACAG 61.681 65.000 0.00 0.00 0.00 3.51
211 212 1.977293 GAGGGAGGGGTGATGACAGC 61.977 65.000 0.00 0.00 42.88 4.40
212 213 2.187946 GGAGGGGTGATGACAGCG 59.812 66.667 0.00 0.00 44.31 5.18
213 214 2.187946 GAGGGGTGATGACAGCGG 59.812 66.667 0.00 0.00 44.31 5.52
214 215 4.101448 AGGGGTGATGACAGCGGC 62.101 66.667 0.00 0.00 44.31 6.53
234 235 2.184579 GCCTTCGGCTCGCTTAGT 59.815 61.111 0.00 0.00 46.69 2.24
235 236 1.878975 GCCTTCGGCTCGCTTAGTC 60.879 63.158 0.00 0.00 46.69 2.59
236 237 1.511305 CCTTCGGCTCGCTTAGTCA 59.489 57.895 0.00 0.00 0.00 3.41
237 238 0.103208 CCTTCGGCTCGCTTAGTCAT 59.897 55.000 0.00 0.00 0.00 3.06
238 239 1.482278 CTTCGGCTCGCTTAGTCATC 58.518 55.000 0.00 0.00 0.00 2.92
239 240 0.815095 TTCGGCTCGCTTAGTCATCA 59.185 50.000 0.00 0.00 0.00 3.07
240 241 0.100682 TCGGCTCGCTTAGTCATCAC 59.899 55.000 0.00 0.00 0.00 3.06
241 242 0.101399 CGGCTCGCTTAGTCATCACT 59.899 55.000 0.00 0.00 36.55 3.41
242 243 1.333931 CGGCTCGCTTAGTCATCACTA 59.666 52.381 0.00 0.00 33.62 2.74
243 244 2.603412 CGGCTCGCTTAGTCATCACTAG 60.603 54.545 0.00 0.00 36.43 2.57
244 245 2.287909 GGCTCGCTTAGTCATCACTAGG 60.288 54.545 0.00 0.00 36.43 3.02
245 246 2.359531 GCTCGCTTAGTCATCACTAGGT 59.640 50.000 0.00 0.00 36.43 3.08
246 247 3.793801 GCTCGCTTAGTCATCACTAGGTG 60.794 52.174 0.00 0.00 41.75 4.00
247 248 2.688446 TCGCTTAGTCATCACTAGGTGG 59.312 50.000 0.00 0.00 41.09 4.61
248 249 2.427453 CGCTTAGTCATCACTAGGTGGT 59.573 50.000 0.00 0.00 38.46 4.16
249 250 3.489398 CGCTTAGTCATCACTAGGTGGTC 60.489 52.174 0.00 0.00 38.46 4.02
250 251 3.702045 GCTTAGTCATCACTAGGTGGTCT 59.298 47.826 0.00 0.00 36.43 3.85
251 252 4.888239 GCTTAGTCATCACTAGGTGGTCTA 59.112 45.833 0.00 0.00 36.43 2.59
252 253 5.221087 GCTTAGTCATCACTAGGTGGTCTAC 60.221 48.000 0.00 0.00 36.43 2.59
253 254 3.280295 AGTCATCACTAGGTGGTCTACG 58.720 50.000 0.00 0.00 33.87 3.51
254 255 2.358267 GTCATCACTAGGTGGTCTACGG 59.642 54.545 0.00 0.00 33.87 4.02
255 256 2.240414 TCATCACTAGGTGGTCTACGGA 59.760 50.000 0.00 0.00 33.87 4.69
256 257 3.117625 TCATCACTAGGTGGTCTACGGAT 60.118 47.826 0.00 0.00 33.87 4.18
257 258 2.928334 TCACTAGGTGGTCTACGGATC 58.072 52.381 0.00 0.00 33.87 3.36
258 259 2.508716 TCACTAGGTGGTCTACGGATCT 59.491 50.000 0.00 0.00 33.87 2.75
259 260 3.053842 TCACTAGGTGGTCTACGGATCTT 60.054 47.826 0.00 0.00 33.87 2.40
260 261 3.066900 CACTAGGTGGTCTACGGATCTTG 59.933 52.174 0.00 0.00 0.00 3.02
261 262 2.526888 AGGTGGTCTACGGATCTTGA 57.473 50.000 0.00 0.00 0.00 3.02
262 263 2.816411 AGGTGGTCTACGGATCTTGAA 58.184 47.619 0.00 0.00 0.00 2.69
263 264 2.761208 AGGTGGTCTACGGATCTTGAAG 59.239 50.000 0.00 0.00 0.00 3.02
264 265 2.758979 GGTGGTCTACGGATCTTGAAGA 59.241 50.000 0.00 0.00 0.00 2.87
265 266 3.385111 GGTGGTCTACGGATCTTGAAGAT 59.615 47.826 7.53 7.53 37.73 2.40
266 267 4.363999 GTGGTCTACGGATCTTGAAGATG 58.636 47.826 13.18 1.58 34.53 2.90
267 268 3.384789 TGGTCTACGGATCTTGAAGATGG 59.615 47.826 13.18 6.84 34.53 3.51
622 623 4.873746 AAAAGTCTCTGTAGCTAGTGCA 57.126 40.909 0.00 0.00 42.74 4.57
623 624 4.873746 AAAGTCTCTGTAGCTAGTGCAA 57.126 40.909 0.00 0.00 42.74 4.08
624 625 5.413309 AAAGTCTCTGTAGCTAGTGCAAT 57.587 39.130 0.00 0.00 42.74 3.56
625 626 4.383850 AGTCTCTGTAGCTAGTGCAATG 57.616 45.455 0.00 0.00 42.74 2.82
626 627 3.766591 AGTCTCTGTAGCTAGTGCAATGT 59.233 43.478 0.00 0.00 42.74 2.71
627 628 3.862267 GTCTCTGTAGCTAGTGCAATGTG 59.138 47.826 0.00 0.00 42.74 3.21
628 629 3.511540 TCTCTGTAGCTAGTGCAATGTGT 59.488 43.478 0.00 0.00 42.74 3.72
629 630 4.021104 TCTCTGTAGCTAGTGCAATGTGTT 60.021 41.667 0.00 0.00 42.74 3.32
630 631 4.245660 TCTGTAGCTAGTGCAATGTGTTC 58.754 43.478 0.00 0.00 42.74 3.18
631 632 3.334691 TGTAGCTAGTGCAATGTGTTCC 58.665 45.455 0.00 0.00 42.74 3.62
632 633 2.867109 AGCTAGTGCAATGTGTTCCT 57.133 45.000 0.00 0.00 42.74 3.36
633 634 2.430465 AGCTAGTGCAATGTGTTCCTG 58.570 47.619 0.00 0.00 42.74 3.86
634 635 1.470098 GCTAGTGCAATGTGTTCCTGG 59.530 52.381 0.00 0.00 39.41 4.45
635 636 1.470098 CTAGTGCAATGTGTTCCTGGC 59.530 52.381 0.00 0.00 0.00 4.85
636 637 0.178981 AGTGCAATGTGTTCCTGGCT 60.179 50.000 0.00 0.00 0.00 4.75
637 638 0.038892 GTGCAATGTGTTCCTGGCTG 60.039 55.000 0.00 0.00 0.00 4.85
638 639 0.467844 TGCAATGTGTTCCTGGCTGT 60.468 50.000 0.00 0.00 0.00 4.40
639 640 1.202867 TGCAATGTGTTCCTGGCTGTA 60.203 47.619 0.00 0.00 0.00 2.74
640 641 1.470098 GCAATGTGTTCCTGGCTGTAG 59.530 52.381 0.00 0.00 0.00 2.74
641 642 2.783135 CAATGTGTTCCTGGCTGTAGT 58.217 47.619 0.00 0.00 0.00 2.73
642 643 3.868369 GCAATGTGTTCCTGGCTGTAGTA 60.868 47.826 0.00 0.00 0.00 1.82
643 644 4.323417 CAATGTGTTCCTGGCTGTAGTAA 58.677 43.478 0.00 0.00 0.00 2.24
644 645 4.634012 ATGTGTTCCTGGCTGTAGTAAA 57.366 40.909 0.00 0.00 0.00 2.01
645 646 4.425180 TGTGTTCCTGGCTGTAGTAAAA 57.575 40.909 0.00 0.00 0.00 1.52
646 647 4.783055 TGTGTTCCTGGCTGTAGTAAAAA 58.217 39.130 0.00 0.00 0.00 1.94
663 664 2.424684 AAAACTAATTTGGGGGCCCA 57.575 45.000 26.86 7.88 45.63 5.36
728 729 3.319198 GGGCCTGGTCGTGAGGAA 61.319 66.667 0.84 0.00 31.48 3.36
729 730 2.266055 GGCCTGGTCGTGAGGAAG 59.734 66.667 0.00 0.00 31.48 3.46
730 731 2.435059 GCCTGGTCGTGAGGAAGC 60.435 66.667 0.00 0.00 31.48 3.86
731 732 2.266055 CCTGGTCGTGAGGAAGCC 59.734 66.667 0.00 0.00 31.48 4.35
732 733 2.266055 CTGGTCGTGAGGAAGCCC 59.734 66.667 0.00 0.00 0.00 5.19
733 734 3.649277 CTGGTCGTGAGGAAGCCCG 62.649 68.421 0.00 0.00 37.58 6.13
734 735 3.379445 GGTCGTGAGGAAGCCCGA 61.379 66.667 0.00 0.00 37.58 5.14
735 736 2.126031 GTCGTGAGGAAGCCCGAC 60.126 66.667 0.00 0.00 42.22 4.79
736 737 2.282958 TCGTGAGGAAGCCCGACT 60.283 61.111 0.00 0.00 37.58 4.18
737 738 1.906824 TCGTGAGGAAGCCCGACTT 60.907 57.895 0.00 0.00 42.98 3.01
744 745 4.035102 AAGCCCGACTTCCCCTGC 62.035 66.667 0.00 0.00 30.77 4.85
772 773 3.474570 GGACTCCTGCCGATGCCT 61.475 66.667 0.00 0.00 36.33 4.75
795 796 2.464796 TAGGGTGAGATTCGGCCTAA 57.535 50.000 0.00 0.00 0.00 2.69
796 797 1.807814 AGGGTGAGATTCGGCCTAAT 58.192 50.000 1.35 1.35 0.00 1.73
826 827 1.308783 GGCAAGTTAGACAGCCAGGC 61.309 60.000 1.84 1.84 46.26 4.85
856 857 8.470805 GTTTGATCTCTAATCTGTCAAGTCCTA 58.529 37.037 0.00 0.00 31.28 2.94
857 858 8.595362 TTGATCTCTAATCTGTCAAGTCCTAA 57.405 34.615 0.00 0.00 0.00 2.69
859 860 9.868160 TGATCTCTAATCTGTCAAGTCCTAATA 57.132 33.333 0.00 0.00 0.00 0.98
888 909 5.887035 ACAGAGTAGGAGTACAATACTGTCC 59.113 44.000 8.78 0.00 39.59 4.02
890 911 4.544683 AGTAGGAGTACAATACTGTCCCC 58.455 47.826 0.00 0.00 39.59 4.81
892 913 3.798515 AGGAGTACAATACTGTCCCCAA 58.201 45.455 0.00 0.00 39.59 4.12
893 914 3.775316 AGGAGTACAATACTGTCCCCAAG 59.225 47.826 0.00 0.00 39.59 3.61
978 1007 1.144565 CGATCGGCTTCTCAGTGCTG 61.145 60.000 7.38 0.00 36.94 4.41
998 1027 1.154016 CGTCGATCAAGTCCTGCGT 60.154 57.895 0.00 0.00 0.00 5.24
1038 1067 4.838152 CGCTACGTGGCCATGGCT 62.838 66.667 34.70 18.66 41.60 4.75
1131 1161 4.135153 CTCACCCTCTCCACCGCG 62.135 72.222 0.00 0.00 0.00 6.46
1341 1371 3.000819 ATGGACCACGGCGAGGAA 61.001 61.111 29.75 14.54 0.00 3.36
1420 1450 1.449778 GGTAACAGCGGCTCCTTCC 60.450 63.158 0.00 0.00 0.00 3.46
1944 1980 1.244816 TCGTTGAGGACATCGACTGT 58.755 50.000 5.97 0.00 41.31 3.55
2052 2102 6.710744 ACAAGGTTTGTCAATTACTAGGAGTG 59.289 38.462 0.00 0.00 40.56 3.51
2171 2232 2.867287 TTGTCGAACAGGTGACGTTA 57.133 45.000 0.00 0.00 37.94 3.18
2243 2304 2.166459 GAGGATCATCGTCTTCACCACA 59.834 50.000 0.00 0.00 33.17 4.17
2386 2447 4.442052 CGAAGATGACCACACCATGTATCT 60.442 45.833 0.00 0.00 0.00 1.98
2499 2560 1.355916 GATCTCGTCGGGTTCCTCG 59.644 63.158 0.00 0.00 0.00 4.63
2525 2586 3.003763 AGGGGAGAAGTCGGTGCC 61.004 66.667 0.00 0.00 0.00 5.01
2732 2793 4.141779 ACCGATGTTGTAGGGAGGAATAAC 60.142 45.833 0.00 0.00 0.00 1.89
3114 4835 2.624364 ACACATGCATTTGTCTCAAGCA 59.376 40.909 12.71 0.00 39.79 3.91
3175 4896 1.937899 GTCAAGCACAACACCGTAGTT 59.062 47.619 0.00 0.00 0.00 2.24
3299 5021 5.394224 AAACCAACCGAACTCTTCAAAAA 57.606 34.783 0.00 0.00 0.00 1.94
3324 5046 9.807649 AAACTATGCATAGACCATTTGATTTTC 57.192 29.630 34.86 0.00 34.50 2.29
3325 5047 8.523915 ACTATGCATAGACCATTTGATTTTCA 57.476 30.769 34.86 0.00 34.50 2.69
3326 5048 8.970020 ACTATGCATAGACCATTTGATTTTCAA 58.030 29.630 34.86 0.00 33.01 2.69
3327 5049 9.806203 CTATGCATAGACCATTTGATTTTCAAA 57.194 29.630 26.63 5.25 40.21 2.69
3355 5081 3.371102 TGAAGTCACAACCTTCTCTCG 57.629 47.619 0.00 0.00 39.24 4.04
3397 5125 2.885135 TGGGACCTCGTTAGAGTACA 57.115 50.000 0.00 0.00 42.86 2.90
3410 5138 1.595993 GAGTACAGACAGCTCCCGCA 61.596 60.000 0.00 0.00 39.10 5.69
3413 5141 1.136305 GTACAGACAGCTCCCGCAATA 59.864 52.381 0.00 0.00 39.10 1.90
3417 5145 0.533755 GACAGCTCCCGCAATAGCAT 60.534 55.000 4.25 0.00 41.32 3.79
3456 5185 9.325198 AGTTGATATAGTTAATGTGCGAAATCA 57.675 29.630 0.00 0.00 0.00 2.57
3540 5271 6.263842 ACATGAAAGACAGAAAAGAGAATGCA 59.736 34.615 0.00 0.00 0.00 3.96
3677 5408 9.278978 TGTTAGTTCAAAATAACTACTGATGCA 57.721 29.630 12.58 0.00 40.70 3.96
3681 5412 8.177663 AGTTCAAAATAACTACTGATGCAATCG 58.822 33.333 0.00 0.00 41.28 3.34
3713 5444 3.251004 GGGAGTTGCTGAACACTAACAAG 59.749 47.826 0.00 0.00 34.17 3.16
3729 5460 6.094048 CACTAACAAGTATATATGCCCCATGC 59.906 42.308 0.00 0.00 41.77 4.06
3731 5462 5.261040 ACAAGTATATATGCCCCATGCTT 57.739 39.130 0.00 0.00 42.00 3.91
3798 5529 2.723322 TCCCAGAAGATGCAGATTGG 57.277 50.000 0.00 0.00 0.00 3.16
3853 5584 6.702329 AGTGTTGAGGATAGAAGTAAACCAG 58.298 40.000 0.00 0.00 0.00 4.00
3862 5710 8.615705 AGGATAGAAGTAAACCAGGAGAAAATT 58.384 33.333 0.00 0.00 0.00 1.82
3921 5961 6.207614 GTCATTTAGGCTTGGAAGATATTCCC 59.792 42.308 16.39 1.14 40.39 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.079127 ACCAAAGACAGATCCGCCG 60.079 57.895 0.00 0.00 0.00 6.46
2 3 0.036388 TCCACCAAAGACAGATCCGC 60.036 55.000 0.00 0.00 0.00 5.54
4 5 3.119352 GCAAATCCACCAAAGACAGATCC 60.119 47.826 0.00 0.00 0.00 3.36
5 6 3.760684 AGCAAATCCACCAAAGACAGATC 59.239 43.478 0.00 0.00 0.00 2.75
9 10 1.879380 CGAGCAAATCCACCAAAGACA 59.121 47.619 0.00 0.00 0.00 3.41
10 11 1.200020 CCGAGCAAATCCACCAAAGAC 59.800 52.381 0.00 0.00 0.00 3.01
11 12 1.073125 TCCGAGCAAATCCACCAAAGA 59.927 47.619 0.00 0.00 0.00 2.52
12 13 1.533625 TCCGAGCAAATCCACCAAAG 58.466 50.000 0.00 0.00 0.00 2.77
13 14 2.091541 GATCCGAGCAAATCCACCAAA 58.908 47.619 0.00 0.00 0.00 3.28
14 15 1.281867 AGATCCGAGCAAATCCACCAA 59.718 47.619 0.00 0.00 0.00 3.67
15 16 0.911769 AGATCCGAGCAAATCCACCA 59.088 50.000 0.00 0.00 0.00 4.17
16 17 1.303309 CAGATCCGAGCAAATCCACC 58.697 55.000 0.00 0.00 0.00 4.61
17 18 2.029838 ACAGATCCGAGCAAATCCAC 57.970 50.000 0.00 0.00 0.00 4.02
18 19 2.632377 GAACAGATCCGAGCAAATCCA 58.368 47.619 0.00 0.00 0.00 3.41
19 20 1.594862 CGAACAGATCCGAGCAAATCC 59.405 52.381 0.00 0.00 0.00 3.01
20 21 2.271800 ACGAACAGATCCGAGCAAATC 58.728 47.619 0.00 0.00 0.00 2.17
21 22 2.271800 GACGAACAGATCCGAGCAAAT 58.728 47.619 0.00 0.00 0.00 2.32
22 23 1.710013 GACGAACAGATCCGAGCAAA 58.290 50.000 0.00 0.00 0.00 3.68
23 24 0.456142 CGACGAACAGATCCGAGCAA 60.456 55.000 0.00 0.00 0.00 3.91
24 25 1.136774 CGACGAACAGATCCGAGCA 59.863 57.895 0.00 0.00 0.00 4.26
25 26 0.456312 AACGACGAACAGATCCGAGC 60.456 55.000 0.00 0.00 0.00 5.03
26 27 1.536149 GAACGACGAACAGATCCGAG 58.464 55.000 0.00 0.00 0.00 4.63
27 28 0.179207 CGAACGACGAACAGATCCGA 60.179 55.000 0.00 0.00 45.77 4.55
28 29 0.453950 ACGAACGACGAACAGATCCG 60.454 55.000 0.00 0.00 45.77 4.18
29 30 1.135746 AGACGAACGACGAACAGATCC 60.136 52.381 0.00 0.00 45.77 3.36
30 31 2.244281 AGACGAACGACGAACAGATC 57.756 50.000 0.00 0.00 45.77 2.75
31 32 2.582687 GAAGACGAACGACGAACAGAT 58.417 47.619 0.00 0.00 45.77 2.90
32 33 1.658373 CGAAGACGAACGACGAACAGA 60.658 52.381 0.00 0.00 45.77 3.41
33 34 0.695943 CGAAGACGAACGACGAACAG 59.304 55.000 0.00 0.00 45.77 3.16
34 35 0.027979 ACGAAGACGAACGACGAACA 59.972 50.000 0.00 0.00 45.77 3.18
35 36 1.115639 AACGAAGACGAACGACGAAC 58.884 50.000 0.00 0.00 45.77 3.95
36 37 1.388888 GAACGAAGACGAACGACGAA 58.611 50.000 0.00 0.00 45.77 3.85
37 38 0.719194 CGAACGAAGACGAACGACGA 60.719 55.000 0.00 0.00 45.77 4.20
39 40 0.424920 CACGAACGAAGACGAACGAC 59.575 55.000 15.27 0.00 42.66 4.34
40 41 0.027979 ACACGAACGAAGACGAACGA 59.972 50.000 15.27 0.00 42.66 3.85
41 42 0.156035 CACACGAACGAAGACGAACG 59.844 55.000 0.14 0.00 42.66 3.95
42 43 1.186623 GACACACGAACGAAGACGAAC 59.813 52.381 0.14 0.00 42.66 3.95
43 44 1.064505 AGACACACGAACGAAGACGAA 59.935 47.619 0.14 0.00 42.66 3.85
44 45 0.659427 AGACACACGAACGAAGACGA 59.341 50.000 0.14 0.00 42.66 4.20
45 46 1.447201 GAAGACACACGAACGAAGACG 59.553 52.381 0.14 0.00 45.75 4.18
46 47 2.456989 TGAAGACACACGAACGAAGAC 58.543 47.619 0.14 0.00 0.00 3.01
47 48 2.543031 CCTGAAGACACACGAACGAAGA 60.543 50.000 0.14 0.00 0.00 2.87
48 49 1.787155 CCTGAAGACACACGAACGAAG 59.213 52.381 0.14 0.00 0.00 3.79
49 50 1.135527 ACCTGAAGACACACGAACGAA 59.864 47.619 0.14 0.00 0.00 3.85
50 51 0.742505 ACCTGAAGACACACGAACGA 59.257 50.000 0.14 0.00 0.00 3.85
51 52 1.257936 CAACCTGAAGACACACGAACG 59.742 52.381 0.00 0.00 0.00 3.95
52 53 1.597663 CCAACCTGAAGACACACGAAC 59.402 52.381 0.00 0.00 0.00 3.95
53 54 1.483004 TCCAACCTGAAGACACACGAA 59.517 47.619 0.00 0.00 0.00 3.85
54 55 1.116308 TCCAACCTGAAGACACACGA 58.884 50.000 0.00 0.00 0.00 4.35
55 56 2.069273 GATCCAACCTGAAGACACACG 58.931 52.381 0.00 0.00 0.00 4.49
56 57 2.039084 AGGATCCAACCTGAAGACACAC 59.961 50.000 15.82 0.00 39.01 3.82
57 58 2.338809 AGGATCCAACCTGAAGACACA 58.661 47.619 15.82 0.00 39.01 3.72
58 59 3.425162 AAGGATCCAACCTGAAGACAC 57.575 47.619 15.82 0.00 40.49 3.67
59 60 4.141274 TCAAAAGGATCCAACCTGAAGACA 60.141 41.667 15.82 0.00 40.49 3.41
60 61 4.398319 TCAAAAGGATCCAACCTGAAGAC 58.602 43.478 15.82 0.00 40.49 3.01
61 62 4.722526 TCAAAAGGATCCAACCTGAAGA 57.277 40.909 15.82 0.00 40.49 2.87
62 63 5.573337 GATCAAAAGGATCCAACCTGAAG 57.427 43.478 15.82 0.00 45.58 3.02
73 74 7.986320 CAGATGAAGAGTGTAGATCAAAAGGAT 59.014 37.037 0.00 0.00 39.53 3.24
74 75 7.038729 ACAGATGAAGAGTGTAGATCAAAAGGA 60.039 37.037 0.00 0.00 0.00 3.36
75 76 7.064371 CACAGATGAAGAGTGTAGATCAAAAGG 59.936 40.741 0.00 0.00 0.00 3.11
76 77 7.064371 CCACAGATGAAGAGTGTAGATCAAAAG 59.936 40.741 0.00 0.00 0.00 2.27
77 78 6.875726 CCACAGATGAAGAGTGTAGATCAAAA 59.124 38.462 0.00 0.00 0.00 2.44
78 79 6.401394 CCACAGATGAAGAGTGTAGATCAAA 58.599 40.000 0.00 0.00 0.00 2.69
79 80 5.625426 GCCACAGATGAAGAGTGTAGATCAA 60.625 44.000 0.00 0.00 0.00 2.57
80 81 4.142071 GCCACAGATGAAGAGTGTAGATCA 60.142 45.833 0.00 0.00 0.00 2.92
81 82 4.367450 GCCACAGATGAAGAGTGTAGATC 58.633 47.826 0.00 0.00 0.00 2.75
82 83 3.181482 CGCCACAGATGAAGAGTGTAGAT 60.181 47.826 0.00 0.00 0.00 1.98
83 84 2.164422 CGCCACAGATGAAGAGTGTAGA 59.836 50.000 0.00 0.00 0.00 2.59
84 85 2.534298 CGCCACAGATGAAGAGTGTAG 58.466 52.381 0.00 0.00 0.00 2.74
85 86 1.204704 CCGCCACAGATGAAGAGTGTA 59.795 52.381 0.00 0.00 0.00 2.90
86 87 0.036952 CCGCCACAGATGAAGAGTGT 60.037 55.000 0.00 0.00 0.00 3.55
87 88 0.036952 ACCGCCACAGATGAAGAGTG 60.037 55.000 0.00 0.00 0.00 3.51
88 89 0.687354 AACCGCCACAGATGAAGAGT 59.313 50.000 0.00 0.00 0.00 3.24
89 90 1.081892 CAACCGCCACAGATGAAGAG 58.918 55.000 0.00 0.00 0.00 2.85
90 91 0.955428 GCAACCGCCACAGATGAAGA 60.955 55.000 0.00 0.00 0.00 2.87
91 92 0.957395 AGCAACCGCCACAGATGAAG 60.957 55.000 0.00 0.00 39.83 3.02
92 93 1.073025 AGCAACCGCCACAGATGAA 59.927 52.632 0.00 0.00 39.83 2.57
93 94 1.672030 CAGCAACCGCCACAGATGA 60.672 57.895 0.00 0.00 39.83 2.92
94 95 1.518056 AACAGCAACCGCCACAGATG 61.518 55.000 0.00 0.00 39.83 2.90
95 96 1.228245 AACAGCAACCGCCACAGAT 60.228 52.632 0.00 0.00 39.83 2.90
96 97 1.891919 GAACAGCAACCGCCACAGA 60.892 57.895 0.00 0.00 39.83 3.41
97 98 1.893808 AGAACAGCAACCGCCACAG 60.894 57.895 0.00 0.00 39.83 3.66
98 99 2.186160 CAGAACAGCAACCGCCACA 61.186 57.895 0.00 0.00 39.83 4.17
99 100 2.639286 CAGAACAGCAACCGCCAC 59.361 61.111 0.00 0.00 39.83 5.01
100 101 2.594303 CCAGAACAGCAACCGCCA 60.594 61.111 0.00 0.00 39.83 5.69
101 102 2.594592 ACCAGAACAGCAACCGCC 60.595 61.111 0.00 0.00 39.83 6.13
102 103 2.639286 CACCAGAACAGCAACCGC 59.361 61.111 0.00 0.00 38.99 5.68
103 104 2.639286 GCACCAGAACAGCAACCG 59.361 61.111 0.00 0.00 0.00 4.44
104 105 2.117941 GACGCACCAGAACAGCAACC 62.118 60.000 0.00 0.00 0.00 3.77
105 106 1.279840 GACGCACCAGAACAGCAAC 59.720 57.895 0.00 0.00 0.00 4.17
106 107 2.243957 CGACGCACCAGAACAGCAA 61.244 57.895 0.00 0.00 0.00 3.91
107 108 2.661537 CGACGCACCAGAACAGCA 60.662 61.111 0.00 0.00 0.00 4.41
108 109 3.414700 CCGACGCACCAGAACAGC 61.415 66.667 0.00 0.00 0.00 4.40
109 110 1.157870 AAACCGACGCACCAGAACAG 61.158 55.000 0.00 0.00 0.00 3.16
110 111 0.745128 AAAACCGACGCACCAGAACA 60.745 50.000 0.00 0.00 0.00 3.18
111 112 1.219646 TAAAACCGACGCACCAGAAC 58.780 50.000 0.00 0.00 0.00 3.01
112 113 1.801771 CATAAAACCGACGCACCAGAA 59.198 47.619 0.00 0.00 0.00 3.02
113 114 1.434555 CATAAAACCGACGCACCAGA 58.565 50.000 0.00 0.00 0.00 3.86
114 115 0.446222 CCATAAAACCGACGCACCAG 59.554 55.000 0.00 0.00 0.00 4.00
115 116 0.956410 CCCATAAAACCGACGCACCA 60.956 55.000 0.00 0.00 0.00 4.17
116 117 0.674269 TCCCATAAAACCGACGCACC 60.674 55.000 0.00 0.00 0.00 5.01
117 118 0.445043 GTCCCATAAAACCGACGCAC 59.555 55.000 0.00 0.00 0.00 5.34
118 119 0.674269 GGTCCCATAAAACCGACGCA 60.674 55.000 0.00 0.00 0.00 5.24
119 120 0.392060 AGGTCCCATAAAACCGACGC 60.392 55.000 0.00 0.00 40.63 5.19
120 121 2.103537 AAGGTCCCATAAAACCGACG 57.896 50.000 0.00 0.00 40.63 5.12
121 122 2.941064 GCTAAGGTCCCATAAAACCGAC 59.059 50.000 0.00 0.00 40.63 4.79
122 123 2.572556 TGCTAAGGTCCCATAAAACCGA 59.427 45.455 0.00 0.00 40.63 4.69
123 124 2.681344 GTGCTAAGGTCCCATAAAACCG 59.319 50.000 0.00 0.00 40.63 4.44
124 125 2.681344 CGTGCTAAGGTCCCATAAAACC 59.319 50.000 0.00 0.00 35.69 3.27
125 126 3.373130 GTCGTGCTAAGGTCCCATAAAAC 59.627 47.826 0.00 0.00 0.00 2.43
126 127 3.602483 GTCGTGCTAAGGTCCCATAAAA 58.398 45.455 0.00 0.00 0.00 1.52
127 128 2.417651 CGTCGTGCTAAGGTCCCATAAA 60.418 50.000 0.00 0.00 0.00 1.40
128 129 1.135527 CGTCGTGCTAAGGTCCCATAA 59.864 52.381 0.00 0.00 0.00 1.90
129 130 0.742505 CGTCGTGCTAAGGTCCCATA 59.257 55.000 0.00 0.00 0.00 2.74
130 131 0.968901 TCGTCGTGCTAAGGTCCCAT 60.969 55.000 0.00 0.00 0.00 4.00
131 132 1.604308 TCGTCGTGCTAAGGTCCCA 60.604 57.895 0.00 0.00 0.00 4.37
132 133 1.153881 GTCGTCGTGCTAAGGTCCC 60.154 63.158 0.00 0.00 0.00 4.46
133 134 0.243095 AAGTCGTCGTGCTAAGGTCC 59.757 55.000 0.00 0.00 0.00 4.46
134 135 1.615502 GAAGTCGTCGTGCTAAGGTC 58.384 55.000 0.00 0.00 0.00 3.85
135 136 0.243095 GGAAGTCGTCGTGCTAAGGT 59.757 55.000 0.00 0.00 0.00 3.50
136 137 0.458025 GGGAAGTCGTCGTGCTAAGG 60.458 60.000 0.00 0.00 0.00 2.69
137 138 0.242825 TGGGAAGTCGTCGTGCTAAG 59.757 55.000 0.00 0.00 0.00 2.18
138 139 0.675083 TTGGGAAGTCGTCGTGCTAA 59.325 50.000 0.00 0.00 0.00 3.09
139 140 0.038892 GTTGGGAAGTCGTCGTGCTA 60.039 55.000 0.00 0.00 0.00 3.49
140 141 1.300697 GTTGGGAAGTCGTCGTGCT 60.301 57.895 0.00 0.00 0.00 4.40
141 142 1.300697 AGTTGGGAAGTCGTCGTGC 60.301 57.895 0.00 0.00 0.00 5.34
142 143 0.249322 ACAGTTGGGAAGTCGTCGTG 60.249 55.000 0.00 0.00 0.00 4.35
143 144 0.031721 GACAGTTGGGAAGTCGTCGT 59.968 55.000 0.00 0.00 0.00 4.34
144 145 0.314302 AGACAGTTGGGAAGTCGTCG 59.686 55.000 0.00 0.00 37.36 5.12
145 146 3.870633 ATAGACAGTTGGGAAGTCGTC 57.129 47.619 0.00 0.00 37.36 4.20
146 147 4.525487 TGTAATAGACAGTTGGGAAGTCGT 59.475 41.667 0.00 0.00 37.36 4.34
147 148 5.068234 TGTAATAGACAGTTGGGAAGTCG 57.932 43.478 0.00 0.00 37.36 4.18
148 149 6.228258 TGTTGTAATAGACAGTTGGGAAGTC 58.772 40.000 0.00 0.00 39.88 3.01
149 150 6.182507 TGTTGTAATAGACAGTTGGGAAGT 57.817 37.500 0.00 0.00 39.88 3.01
150 151 6.149474 CCTTGTTGTAATAGACAGTTGGGAAG 59.851 42.308 0.00 0.00 39.88 3.46
151 152 6.001460 CCTTGTTGTAATAGACAGTTGGGAA 58.999 40.000 0.00 0.00 39.88 3.97
152 153 5.072600 ACCTTGTTGTAATAGACAGTTGGGA 59.927 40.000 0.00 0.00 39.88 4.37
153 154 5.313712 ACCTTGTTGTAATAGACAGTTGGG 58.686 41.667 0.00 0.00 39.88 4.12
154 155 6.293955 CCAACCTTGTTGTAATAGACAGTTGG 60.294 42.308 10.97 10.97 45.44 3.77
155 156 6.668323 CCAACCTTGTTGTAATAGACAGTTG 58.332 40.000 6.25 0.00 39.88 3.16
156 157 5.240844 GCCAACCTTGTTGTAATAGACAGTT 59.759 40.000 6.25 0.00 39.88 3.16
157 158 4.760204 GCCAACCTTGTTGTAATAGACAGT 59.240 41.667 6.25 0.00 39.88 3.55
158 159 4.156008 GGCCAACCTTGTTGTAATAGACAG 59.844 45.833 0.00 0.00 39.88 3.51
159 160 4.076394 GGCCAACCTTGTTGTAATAGACA 58.924 43.478 0.00 0.00 35.78 3.41
160 161 3.442625 GGGCCAACCTTGTTGTAATAGAC 59.557 47.826 4.39 0.00 35.85 2.59
161 162 3.692690 GGGCCAACCTTGTTGTAATAGA 58.307 45.455 4.39 0.00 35.85 1.98
162 163 2.422127 CGGGCCAACCTTGTTGTAATAG 59.578 50.000 4.39 0.00 36.97 1.73
163 164 2.438411 CGGGCCAACCTTGTTGTAATA 58.562 47.619 4.39 0.00 36.97 0.98
164 165 1.253100 CGGGCCAACCTTGTTGTAAT 58.747 50.000 4.39 0.00 36.97 1.89
165 166 0.824182 CCGGGCCAACCTTGTTGTAA 60.824 55.000 4.39 0.00 36.97 2.41
166 167 1.228306 CCGGGCCAACCTTGTTGTA 60.228 57.895 4.39 0.00 36.97 2.41
167 168 2.520741 CCGGGCCAACCTTGTTGT 60.521 61.111 4.39 0.00 36.97 3.32
168 169 3.989787 GCCGGGCCAACCTTGTTG 61.990 66.667 8.12 0.00 36.97 3.33
169 170 4.218686 AGCCGGGCCAACCTTGTT 62.219 61.111 17.02 0.00 36.97 2.83
170 171 4.660938 GAGCCGGGCCAACCTTGT 62.661 66.667 17.02 0.00 36.97 3.16
189 190 3.866582 CATCACCCCTCCCTCGCC 61.867 72.222 0.00 0.00 0.00 5.54
190 191 2.764128 TCATCACCCCTCCCTCGC 60.764 66.667 0.00 0.00 0.00 5.03
191 192 1.680522 CTGTCATCACCCCTCCCTCG 61.681 65.000 0.00 0.00 0.00 4.63
192 193 1.977293 GCTGTCATCACCCCTCCCTC 61.977 65.000 0.00 0.00 0.00 4.30
193 194 1.997874 GCTGTCATCACCCCTCCCT 60.998 63.158 0.00 0.00 0.00 4.20
194 195 2.592308 GCTGTCATCACCCCTCCC 59.408 66.667 0.00 0.00 0.00 4.30
195 196 2.187946 CGCTGTCATCACCCCTCC 59.812 66.667 0.00 0.00 0.00 4.30
196 197 2.187946 CCGCTGTCATCACCCCTC 59.812 66.667 0.00 0.00 0.00 4.30
197 198 4.101448 GCCGCTGTCATCACCCCT 62.101 66.667 0.00 0.00 0.00 4.79
219 220 1.202302 TGATGACTAAGCGAGCCGAAG 60.202 52.381 0.00 0.00 0.00 3.79
220 221 0.815095 TGATGACTAAGCGAGCCGAA 59.185 50.000 0.00 0.00 0.00 4.30
221 222 0.100682 GTGATGACTAAGCGAGCCGA 59.899 55.000 0.00 0.00 0.00 5.54
222 223 0.101399 AGTGATGACTAAGCGAGCCG 59.899 55.000 0.00 0.00 0.00 5.52
223 224 2.287909 CCTAGTGATGACTAAGCGAGCC 60.288 54.545 0.00 0.00 34.14 4.70
224 225 2.359531 ACCTAGTGATGACTAAGCGAGC 59.640 50.000 0.00 0.00 34.14 5.03
225 226 3.243234 CCACCTAGTGATGACTAAGCGAG 60.243 52.174 0.00 0.00 34.14 5.03
226 227 2.688446 CCACCTAGTGATGACTAAGCGA 59.312 50.000 0.00 0.00 34.14 4.93
227 228 2.427453 ACCACCTAGTGATGACTAAGCG 59.573 50.000 0.00 0.00 34.14 4.68
228 229 3.702045 AGACCACCTAGTGATGACTAAGC 59.298 47.826 0.00 0.00 34.14 3.09
229 230 5.007823 CGTAGACCACCTAGTGATGACTAAG 59.992 48.000 0.00 0.00 34.14 2.18
230 231 4.880120 CGTAGACCACCTAGTGATGACTAA 59.120 45.833 0.00 0.00 34.14 2.24
231 232 4.449131 CGTAGACCACCTAGTGATGACTA 58.551 47.826 0.00 0.00 35.23 2.59
232 233 3.280295 CGTAGACCACCTAGTGATGACT 58.720 50.000 0.00 0.00 35.23 3.41
233 234 2.358267 CCGTAGACCACCTAGTGATGAC 59.642 54.545 0.00 0.00 35.23 3.06
234 235 2.240414 TCCGTAGACCACCTAGTGATGA 59.760 50.000 0.00 0.00 35.23 2.92
235 236 2.651455 TCCGTAGACCACCTAGTGATG 58.349 52.381 0.00 0.00 35.23 3.07
236 237 3.138653 AGATCCGTAGACCACCTAGTGAT 59.861 47.826 0.00 0.00 35.23 3.06
237 238 2.508716 AGATCCGTAGACCACCTAGTGA 59.491 50.000 0.00 0.00 35.23 3.41
238 239 2.933573 AGATCCGTAGACCACCTAGTG 58.066 52.381 0.00 0.00 0.00 2.74
239 240 3.053842 TCAAGATCCGTAGACCACCTAGT 60.054 47.826 0.00 0.00 0.00 2.57
240 241 3.552875 TCAAGATCCGTAGACCACCTAG 58.447 50.000 0.00 0.00 0.00 3.02
241 242 3.657398 TCAAGATCCGTAGACCACCTA 57.343 47.619 0.00 0.00 0.00 3.08
242 243 2.526888 TCAAGATCCGTAGACCACCT 57.473 50.000 0.00 0.00 0.00 4.00
243 244 2.758979 TCTTCAAGATCCGTAGACCACC 59.241 50.000 0.00 0.00 0.00 4.61
244 245 4.363999 CATCTTCAAGATCCGTAGACCAC 58.636 47.826 0.00 0.00 31.32 4.16
245 246 3.384789 CCATCTTCAAGATCCGTAGACCA 59.615 47.826 0.00 0.00 31.32 4.02
246 247 3.983741 CCATCTTCAAGATCCGTAGACC 58.016 50.000 0.00 0.00 31.32 3.85
600 601 5.215252 TGCACTAGCTACAGAGACTTTTT 57.785 39.130 0.00 0.00 42.74 1.94
601 602 4.873746 TGCACTAGCTACAGAGACTTTT 57.126 40.909 0.00 0.00 42.74 2.27
602 603 4.873746 TTGCACTAGCTACAGAGACTTT 57.126 40.909 0.00 0.00 42.74 2.66
603 604 4.221703 ACATTGCACTAGCTACAGAGACTT 59.778 41.667 0.00 0.00 42.74 3.01
604 605 3.766591 ACATTGCACTAGCTACAGAGACT 59.233 43.478 0.00 0.00 42.74 3.24
605 606 3.862267 CACATTGCACTAGCTACAGAGAC 59.138 47.826 0.00 0.00 42.74 3.36
606 607 3.511540 ACACATTGCACTAGCTACAGAGA 59.488 43.478 0.00 0.00 42.74 3.10
607 608 3.854666 ACACATTGCACTAGCTACAGAG 58.145 45.455 0.00 0.00 42.74 3.35
608 609 3.961480 ACACATTGCACTAGCTACAGA 57.039 42.857 0.00 0.00 42.74 3.41
609 610 3.372206 GGAACACATTGCACTAGCTACAG 59.628 47.826 0.00 0.00 42.74 2.74
610 611 3.007940 AGGAACACATTGCACTAGCTACA 59.992 43.478 0.00 0.00 42.74 2.74
611 612 3.372206 CAGGAACACATTGCACTAGCTAC 59.628 47.826 0.00 0.00 42.74 3.58
612 613 3.599343 CAGGAACACATTGCACTAGCTA 58.401 45.455 0.00 0.00 42.74 3.32
613 614 2.430465 CAGGAACACATTGCACTAGCT 58.570 47.619 0.00 0.00 42.74 3.32
614 615 1.470098 CCAGGAACACATTGCACTAGC 59.530 52.381 0.00 0.00 42.57 3.42
615 616 1.470098 GCCAGGAACACATTGCACTAG 59.530 52.381 0.00 0.00 0.00 2.57
616 617 1.073763 AGCCAGGAACACATTGCACTA 59.926 47.619 0.00 0.00 0.00 2.74
617 618 0.178981 AGCCAGGAACACATTGCACT 60.179 50.000 0.00 0.00 0.00 4.40
618 619 0.038892 CAGCCAGGAACACATTGCAC 60.039 55.000 0.00 0.00 0.00 4.57
619 620 0.467844 ACAGCCAGGAACACATTGCA 60.468 50.000 0.00 0.00 0.00 4.08
620 621 1.470098 CTACAGCCAGGAACACATTGC 59.530 52.381 0.00 0.00 0.00 3.56
621 622 2.783135 ACTACAGCCAGGAACACATTG 58.217 47.619 0.00 0.00 0.00 2.82
622 623 4.634012 TTACTACAGCCAGGAACACATT 57.366 40.909 0.00 0.00 0.00 2.71
623 624 4.634012 TTTACTACAGCCAGGAACACAT 57.366 40.909 0.00 0.00 0.00 3.21
624 625 4.425180 TTTTACTACAGCCAGGAACACA 57.575 40.909 0.00 0.00 0.00 3.72
643 644 2.707554 TGGGCCCCCAAATTAGTTTTT 58.292 42.857 22.27 0.00 44.12 1.94
644 645 2.424684 TGGGCCCCCAAATTAGTTTT 57.575 45.000 22.27 0.00 44.12 2.43
711 712 3.316573 CTTCCTCACGACCAGGCCC 62.317 68.421 0.00 0.00 0.00 5.80
712 713 2.266055 CTTCCTCACGACCAGGCC 59.734 66.667 0.00 0.00 0.00 5.19
713 714 2.435059 GCTTCCTCACGACCAGGC 60.435 66.667 0.00 0.00 0.00 4.85
714 715 2.266055 GGCTTCCTCACGACCAGG 59.734 66.667 0.00 0.00 0.00 4.45
715 716 2.266055 GGGCTTCCTCACGACCAG 59.734 66.667 0.00 0.00 0.00 4.00
716 717 3.691342 CGGGCTTCCTCACGACCA 61.691 66.667 0.00 0.00 0.00 4.02
717 718 3.379445 TCGGGCTTCCTCACGACC 61.379 66.667 0.00 0.00 0.00 4.79
718 719 2.126031 GTCGGGCTTCCTCACGAC 60.126 66.667 2.76 2.76 46.89 4.34
719 720 1.874345 GAAGTCGGGCTTCCTCACGA 61.874 60.000 11.24 0.00 45.95 4.35
720 721 1.446272 GAAGTCGGGCTTCCTCACG 60.446 63.158 11.24 0.00 45.95 4.35
721 722 4.600207 GAAGTCGGGCTTCCTCAC 57.400 61.111 11.24 0.00 45.95 3.51
727 728 4.035102 GCAGGGGAAGTCGGGCTT 62.035 66.667 0.00 0.00 40.76 4.35
752 753 4.899239 CATCGGCAGGAGTCCGCC 62.899 72.222 26.01 26.01 46.05 6.13
755 756 3.474570 AGGCATCGGCAGGAGTCC 61.475 66.667 0.00 0.00 43.71 3.85
756 757 2.202987 CAGGCATCGGCAGGAGTC 60.203 66.667 0.00 0.00 43.71 3.36
757 758 4.479993 GCAGGCATCGGCAGGAGT 62.480 66.667 0.00 0.00 43.71 3.85
761 762 1.964891 CCTATGCAGGCATCGGCAG 60.965 63.158 10.48 2.51 46.31 4.85
772 773 0.106708 GCCGAATCTCACCCTATGCA 59.893 55.000 0.00 0.00 0.00 3.96
795 796 6.991938 TGTCTAACTTGCCAAATTTGCTAAT 58.008 32.000 12.92 0.00 0.00 1.73
796 797 6.398234 TGTCTAACTTGCCAAATTTGCTAA 57.602 33.333 12.92 8.58 0.00 3.09
824 825 5.593010 ACAGATTAGAGATCAAACTACGCC 58.407 41.667 0.00 0.00 0.00 5.68
826 827 7.971168 ACTTGACAGATTAGAGATCAAACTACG 59.029 37.037 0.00 0.00 0.00 3.51
861 862 9.122779 GACAGTATTGTACTCCTACTCTGTATT 57.877 37.037 0.00 0.00 37.76 1.89
862 863 7.720515 GGACAGTATTGTACTCCTACTCTGTAT 59.279 40.741 0.00 0.00 37.76 2.29
864 865 5.887035 GGACAGTATTGTACTCCTACTCTGT 59.113 44.000 0.00 0.00 37.76 3.41
865 866 5.299782 GGGACAGTATTGTACTCCTACTCTG 59.700 48.000 0.05 0.00 38.29 3.35
866 867 5.447757 GGGACAGTATTGTACTCCTACTCT 58.552 45.833 0.05 0.00 38.29 3.24
867 868 4.583907 GGGGACAGTATTGTACTCCTACTC 59.416 50.000 0.05 0.00 38.29 2.59
869 870 4.284178 TGGGGACAGTATTGTACTCCTAC 58.716 47.826 0.00 0.00 37.90 3.18
871 872 3.484953 TGGGGACAGTATTGTACTCCT 57.515 47.619 0.00 0.00 37.90 3.69
881 902 0.474854 TCTTGGGCTTGGGGACAGTA 60.475 55.000 0.00 0.00 44.54 2.74
885 906 0.112412 TCTTTCTTGGGCTTGGGGAC 59.888 55.000 0.00 0.00 0.00 4.46
886 907 0.856982 TTCTTTCTTGGGCTTGGGGA 59.143 50.000 0.00 0.00 0.00 4.81
888 909 2.037641 CCTTTTCTTTCTTGGGCTTGGG 59.962 50.000 0.00 0.00 0.00 4.12
890 911 4.879197 ATCCTTTTCTTTCTTGGGCTTG 57.121 40.909 0.00 0.00 0.00 4.01
892 913 6.725834 TGATAAATCCTTTTCTTTCTTGGGCT 59.274 34.615 0.00 0.00 0.00 5.19
893 914 6.935167 TGATAAATCCTTTTCTTTCTTGGGC 58.065 36.000 0.00 0.00 0.00 5.36
939 968 2.762745 GAAGCGTGAAGGTAGGACAAA 58.237 47.619 0.00 0.00 0.00 2.83
978 1007 2.167861 GCAGGACTTGATCGACGGC 61.168 63.158 0.00 0.00 0.00 5.68
1341 1371 3.279116 TCGTGGACGTCGACGGTT 61.279 61.111 39.74 21.38 45.87 4.44
1944 1980 3.430565 CTGCGGCAGGTCGATGCTA 62.431 63.158 22.11 0.00 45.75 3.49
1969 2005 2.279784 CCTCTCGCCGCCTTGATC 60.280 66.667 0.00 0.00 0.00 2.92
1991 2027 2.743928 CGGTGAAGCTGTGCCTCC 60.744 66.667 0.00 0.00 0.00 4.30
2070 2124 7.715657 TCAAAGACCCAATATTATGCATGAAC 58.284 34.615 10.16 0.00 0.00 3.18
2109 2166 2.951642 CCGGAAGCATTGACATATGGTT 59.048 45.455 7.80 12.01 45.86 3.67
2171 2232 1.078143 GAAGTTGAGCAGCCCGGAT 60.078 57.895 0.73 0.00 0.00 4.18
2243 2304 0.389948 CGAGCCGCTCCTTGTAGTTT 60.390 55.000 14.85 0.00 0.00 2.66
2282 2343 2.124612 TGCATGTCCATCCTGCCG 60.125 61.111 0.00 0.00 36.98 5.69
2386 2447 1.685517 CCATCAGCTTCTCGATCTCCA 59.314 52.381 0.00 0.00 0.00 3.86
2474 2535 2.125773 ACCCGACGAGATCACTAAGT 57.874 50.000 0.00 0.00 0.00 2.24
2499 2560 0.988063 ACTTCTCCCCTCTTTGCCTC 59.012 55.000 0.00 0.00 0.00 4.70
2525 2586 3.634568 TGATGTTTTACGCCCTTGTTG 57.365 42.857 0.00 0.00 0.00 3.33
2537 2598 5.816777 CACCTTGTTGTTTCCATGATGTTTT 59.183 36.000 0.00 0.00 0.00 2.43
2950 3212 6.058833 TCATAACAAGAACTAGTTTGGCACA 58.941 36.000 10.02 0.00 0.00 4.57
3089 4810 5.691305 GCTTGAGACAAATGCATGTGTTTTA 59.309 36.000 23.29 12.14 32.57 1.52
3090 4811 4.508861 GCTTGAGACAAATGCATGTGTTTT 59.491 37.500 23.29 14.72 32.57 2.43
3114 4835 3.610040 TGGCGATAGTTCAGACATTGT 57.390 42.857 0.00 0.00 39.35 2.71
3168 4889 3.992427 GGGTGAAAGACAAGTAACTACGG 59.008 47.826 0.00 0.00 0.00 4.02
3175 4896 4.223556 TGTTGTGGGTGAAAGACAAGTA 57.776 40.909 0.00 0.00 30.41 2.24
3299 5021 8.970020 TGAAAATCAAATGGTCTATGCATAGTT 58.030 29.630 28.51 15.61 0.00 2.24
3300 5022 8.523915 TGAAAATCAAATGGTCTATGCATAGT 57.476 30.769 28.51 10.69 0.00 2.12
3301 5023 9.806203 TTTGAAAATCAAATGGTCTATGCATAG 57.194 29.630 25.13 25.13 41.02 2.23
3303 5025 8.938906 GTTTTGAAAATCAAATGGTCTATGCAT 58.061 29.630 3.79 3.79 44.75 3.96
3304 5026 7.387397 GGTTTTGAAAATCAAATGGTCTATGCA 59.613 33.333 6.38 0.00 44.75 3.96
3305 5027 7.387397 TGGTTTTGAAAATCAAATGGTCTATGC 59.613 33.333 0.31 0.00 44.75 3.14
3306 5028 8.830201 TGGTTTTGAAAATCAAATGGTCTATG 57.170 30.769 0.31 0.00 44.75 2.23
3307 5029 9.657419 GATGGTTTTGAAAATCAAATGGTCTAT 57.343 29.630 7.78 0.00 44.75 1.98
3308 5030 8.646004 TGATGGTTTTGAAAATCAAATGGTCTA 58.354 29.630 7.78 0.00 44.75 2.59
3309 5031 7.507829 TGATGGTTTTGAAAATCAAATGGTCT 58.492 30.769 7.78 0.00 44.75 3.85
3310 5032 7.727331 TGATGGTTTTGAAAATCAAATGGTC 57.273 32.000 7.78 1.46 44.75 4.02
3311 5033 7.937942 TCATGATGGTTTTGAAAATCAAATGGT 59.062 29.630 20.46 2.91 44.75 3.55
3312 5034 8.325421 TCATGATGGTTTTGAAAATCAAATGG 57.675 30.769 20.46 8.80 44.75 3.16
3313 5035 9.820229 CTTCATGATGGTTTTGAAAATCAAATG 57.180 29.630 17.22 17.22 44.75 2.32
3314 5036 9.563748 ACTTCATGATGGTTTTGAAAATCAAAT 57.436 25.926 7.78 2.55 44.75 2.32
3315 5037 8.961294 ACTTCATGATGGTTTTGAAAATCAAA 57.039 26.923 7.78 0.14 43.84 2.69
3316 5038 8.202811 TGACTTCATGATGGTTTTGAAAATCAA 58.797 29.630 7.78 0.00 34.03 2.57
3317 5039 7.652909 GTGACTTCATGATGGTTTTGAAAATCA 59.347 33.333 6.03 6.03 33.80 2.57
3318 5040 7.652909 TGTGACTTCATGATGGTTTTGAAAATC 59.347 33.333 12.76 0.00 0.00 2.17
3319 5041 7.499292 TGTGACTTCATGATGGTTTTGAAAAT 58.501 30.769 12.76 0.00 0.00 1.82
3320 5042 6.871844 TGTGACTTCATGATGGTTTTGAAAA 58.128 32.000 12.76 0.00 0.00 2.29
3321 5043 6.462552 TGTGACTTCATGATGGTTTTGAAA 57.537 33.333 12.76 0.00 0.00 2.69
3322 5044 6.272318 GTTGTGACTTCATGATGGTTTTGAA 58.728 36.000 12.76 0.00 0.00 2.69
3323 5045 5.221224 GGTTGTGACTTCATGATGGTTTTGA 60.221 40.000 12.76 0.00 0.00 2.69
3324 5046 4.984161 GGTTGTGACTTCATGATGGTTTTG 59.016 41.667 12.76 0.00 0.00 2.44
3325 5047 4.895297 AGGTTGTGACTTCATGATGGTTTT 59.105 37.500 12.76 0.00 0.00 2.43
3326 5048 4.473444 AGGTTGTGACTTCATGATGGTTT 58.527 39.130 12.76 0.00 0.00 3.27
3327 5049 4.104383 AGGTTGTGACTTCATGATGGTT 57.896 40.909 12.76 0.00 0.00 3.67
3410 5138 9.638176 ATCAACTTTCTTATTCTCCATGCTATT 57.362 29.630 0.00 0.00 0.00 1.73
3501 5232 9.299963 CTGTCTTTCATGTTTGTGTTTGATTTA 57.700 29.630 0.00 0.00 0.00 1.40
3540 5271 2.982488 CCTATCCTGGTATCCCAAAGCT 59.018 50.000 0.00 0.00 41.27 3.74
3591 5322 3.582120 GTGTGTGTGGTGGTGGCG 61.582 66.667 0.00 0.00 0.00 5.69
3592 5323 2.049185 TTGTGTGTGTGGTGGTGGC 61.049 57.895 0.00 0.00 0.00 5.01
3604 5335 4.122143 ACACCTTCCAAAATGTTGTGTG 57.878 40.909 0.00 0.00 32.40 3.82
3630 5361 5.454966 ACATTTCCCTCTTAAACCAACTGT 58.545 37.500 0.00 0.00 0.00 3.55
3631 5362 6.405278 AACATTTCCCTCTTAAACCAACTG 57.595 37.500 0.00 0.00 0.00 3.16
3632 5363 7.295340 ACTAACATTTCCCTCTTAAACCAACT 58.705 34.615 0.00 0.00 0.00 3.16
3633 5364 7.520451 ACTAACATTTCCCTCTTAAACCAAC 57.480 36.000 0.00 0.00 0.00 3.77
3634 5365 7.780745 TGAACTAACATTTCCCTCTTAAACCAA 59.219 33.333 0.00 0.00 0.00 3.67
3635 5366 7.291566 TGAACTAACATTTCCCTCTTAAACCA 58.708 34.615 0.00 0.00 0.00 3.67
3636 5367 7.754851 TGAACTAACATTTCCCTCTTAAACC 57.245 36.000 0.00 0.00 0.00 3.27
3684 5415 3.030291 TGTTCAGCAACTCCCACATTTT 58.970 40.909 0.00 0.00 33.17 1.82
3692 5423 3.877508 ACTTGTTAGTGTTCAGCAACTCC 59.122 43.478 0.00 0.00 31.99 3.85
3693 5424 6.787085 ATACTTGTTAGTGTTCAGCAACTC 57.213 37.500 0.00 0.00 35.78 3.01
3699 5430 7.387948 GGGGCATATATACTTGTTAGTGTTCAG 59.612 40.741 0.00 0.00 35.78 3.02
3702 5433 7.144234 TGGGGCATATATACTTGTTAGTGTT 57.856 36.000 0.00 0.00 35.78 3.32
3731 5462 6.070656 AGGAATTCAAGTTTCTTGTCATCCA 58.929 36.000 7.93 0.48 0.00 3.41
3798 5529 8.613060 TCAGATTAATGTCTCCAATAATGAGC 57.387 34.615 0.00 0.00 28.92 4.26
3921 5961 4.021229 AGGTAAATTTCCCGCCTTTAAGG 58.979 43.478 6.64 6.64 38.80 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.