AutoCloner

Multiple sequence alignment - TraesCS1D01G437900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G437900	chr1D	100.000	3194	0	0	1	3194	485104081	485100888	0.000000e+00	5899.0
1	TraesCS1D01G437900	chr1D	79.657	1750	243	54	628	2340	485093545	485091872	0.000000e+00	1155.0
2	TraesCS1D01G437900	chr1D	93.750	128	8	0	460	587	432805112	432804985	3.250000e-45	193.0
3	TraesCS1D01G437900	chr1D	93.701	127	8	0	461	587	322624767	322624893	1.170000e-44	191.0
4	TraesCS1D01G437900	chr1D	92.857	126	9	0	462	587	250608737	250608612	1.960000e-42	183.0
5	TraesCS1D01G437900	chr1A	97.746	2529	49	3	667	3194	582416092	582413571	0.000000e+00	4348.0
6	TraesCS1D01G437900	chr1A	81.792	1038	152	23	1076	2102	582295627	582294616	0.000000e+00	835.0
7	TraesCS1D01G437900	chr1A	78.125	1152	212	22	1207	2340	582361558	582360429	0.000000e+00	695.0
8	TraesCS1D01G437900	chr1A	88.409	509	24	17	1	507	582416669	582416194	5.940000e-162	580.0
9	TraesCS1D01G437900	chr1A	78.444	617	40	40	588	1171	582362108	582361552	1.850000e-82	316.0
10	TraesCS1D01G437900	chr1A	76.218	698	95	43	801	1484	582228055	582227415	1.440000e-78	303.0
11	TraesCS1D01G437900	chr1A	95.652	161	7	0	1071	1231	582282141	582281981	3.160000e-65	259.0
12	TraesCS1D01G437900	chr1A	92.481	133	10	0	1092	1224	582259613	582259481	1.170000e-44	191.0
13	TraesCS1D01G437900	chr1A	83.417	199	23	5	2155	2343	582281949	582281751	3.270000e-40	176.0
14	TraesCS1D01G437900	chr1B	93.507	1725	91	7	776	2487	675555731	675554015	0.000000e+00	2545.0
15	TraesCS1D01G437900	chr1B	77.008	996	194	22	1285	2259	675545955	675544974	3.630000e-149	538.0
16	TraesCS1D01G437900	chr1B	92.000	275	9	4	189	463	675558889	675558628	1.080000e-99	374.0
17	TraesCS1D01G437900	chr1B	82.209	326	29	15	588	904	675550266	675549961	1.470000e-63	254.0
18	TraesCS1D01G437900	chr1B	89.691	194	20	0	1099	1292	675549835	675549642	6.840000e-62	248.0
19	TraesCS1D01G437900	chr1B	91.018	167	7	4	1	160	675559053	675558888	5.360000e-53	219.0
20	TraesCS1D01G437900	chr1B	97.368	114	2	1	642	754	675555888	675555775	3.250000e-45	193.0
21	TraesCS1D01G437900	chr1B	93.478	46	3	0	2314	2359	675554143	675554098	5.720000e-08	69.4
22	TraesCS1D01G437900	chrUn	100.000	394	0	0	2734	3127	479408027	479407634	0.000000e+00	728.0
23	TraesCS1D01G437900	chr7D	92.913	127	9	0	461	587	8593234	8593360	5.440000e-43	185.0
24	TraesCS1D01G437900	chr7D	92.188	128	10	0	460	587	49806593	49806720	7.040000e-42	182.0
25	TraesCS1D01G437900	chr6B	89.796	147	11	4	442	586	630836401	630836257	5.440000e-43	185.0
26	TraesCS1D01G437900	chr5D	91.667	132	11	0	456	587	497461382	497461251	1.960000e-42	183.0
27	TraesCS1D01G437900	chr5D	92.188	128	10	0	460	587	521863988	521864115	7.040000e-42	182.0
28	TraesCS1D01G437900	chr2D	92.857	126	9	0	462	587	150887021	150887146	1.960000e-42	183.0
29	TraesCS1D01G437900	chr6D	84.810	158	16	7	1100	1256	7567546	7567396	5.520000e-33	152.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G437900	chr1D	485100888	485104081	3193	True	5899.00	5899	100.000000	1	3194	1	chr1D.!!$R4	3193
1	TraesCS1D01G437900	chr1D	485091872	485093545	1673	True	1155.00	1155	79.657000	628	2340	1	chr1D.!!$R3	1712
2	TraesCS1D01G437900	chr1A	582413571	582416669	3098	True	2464.00	4348	93.077500	1	3194	2	chr1A.!!$R6	3193
3	TraesCS1D01G437900	chr1A	582294616	582295627	1011	True	835.00	835	81.792000	1076	2102	1	chr1A.!!$R3	1026
4	TraesCS1D01G437900	chr1A	582360429	582362108	1679	True	505.50	695	78.284500	588	2340	2	chr1A.!!$R5	1752
5	TraesCS1D01G437900	chr1A	582227415	582228055	640	True	303.00	303	76.218000	801	1484	1	chr1A.!!$R1	683
6	TraesCS1D01G437900	chr1B	675544974	675559053	14079	True	555.05	2545	89.534875	1	2487	8	chr1B.!!$R1	2486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
238	255	0.033601	TCCATGTGGGGGTATTGTGC	60.034	55.0	0.00	0.0	37.22	4.57	F
499	516	0.159554	CGCAAGCGCTCATATACACG	59.840	55.0	12.06	2.0	35.30	4.49	F
517	534	0.179121	CGCGCATACACTCACCCTTA	60.179	55.0	8.75	0.0	0.00	2.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2019	4811	0.316522	CTGGATGGATCGCGATCAGT	59.683	55.000	40.62	30.77	39.54	3.41	R
2169	14229	2.489938	TAGGCTTCTCCGCAAAACAT	57.510	45.000	0.00	0.00	40.77	2.71	R
2195	14264	3.314553	CAAACATGAAGCTGCTCCAAAG	58.685	45.455	1.00	0.00	0.00	2.77	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
30	38	4.836825	AGGACAATGATCGAACTTGACAT	58.163	39.130	10.73	1.79	0.00	3.06
31	39	5.248640	AGGACAATGATCGAACTTGACATT	58.751	37.500	10.73	0.00	0.00	2.71
32	40	5.352569	AGGACAATGATCGAACTTGACATTC	59.647	40.000	10.73	0.61	0.00	2.67
34	42	4.690748	ACAATGATCGAACTTGACATTCGT	59.309	37.500	10.17	0.32	46.99	3.85
35	43	5.867174	ACAATGATCGAACTTGACATTCGTA	59.133	36.000	10.17	0.37	46.99	3.43
36	44	6.367695	ACAATGATCGAACTTGACATTCGTAA	59.632	34.615	10.17	0.44	46.99	3.18
129	146	0.798776	CGTGTCCACCTCAATTCAGC	59.201	55.000	0.00	0.00	0.00	4.26
139	156	3.760684	ACCTCAATTCAGCCTGAATCAAC	59.239	43.478	19.71	0.00	45.57	3.18
150	167	6.646240	TCAGCCTGAATCAACTTAAATTTTGC	59.354	34.615	0.00	0.00	0.00	3.68
166	183	2.113986	GCTGCAACCCACCTGTCT	59.886	61.111	0.00	0.00	0.00	3.41
167	184	2.263741	GCTGCAACCCACCTGTCTG	61.264	63.158	0.00	0.00	0.00	3.51
173	190	1.645402	AACCCACCTGTCTGGCAAGT	61.645	55.000	0.00	0.00	40.22	3.16
178	195	1.136828	ACCTGTCTGGCAAGTACCAA	58.863	50.000	0.00	0.00	39.86	3.67
236	253	1.564348	GAGTCCATGTGGGGGTATTGT	59.436	52.381	0.00	0.00	37.22	2.71
237	254	1.284785	AGTCCATGTGGGGGTATTGTG	59.715	52.381	0.00	0.00	37.22	3.33
238	255	0.033601	TCCATGTGGGGGTATTGTGC	60.034	55.000	0.00	0.00	37.22	4.57
239	256	0.324183	CCATGTGGGGGTATTGTGCA	60.324	55.000	0.00	0.00	0.00	4.57
240	257	1.105457	CATGTGGGGGTATTGTGCAG	58.895	55.000	0.00	0.00	0.00	4.41
241	258	0.704076	ATGTGGGGGTATTGTGCAGT	59.296	50.000	0.00	0.00	0.00	4.40
242	259	0.480690	TGTGGGGGTATTGTGCAGTT	59.519	50.000	0.00	0.00	0.00	3.16
243	260	1.705745	TGTGGGGGTATTGTGCAGTTA	59.294	47.619	0.00	0.00	0.00	2.24
244	261	2.310349	TGTGGGGGTATTGTGCAGTTAT	59.690	45.455	0.00	0.00	0.00	1.89
245	262	3.245443	TGTGGGGGTATTGTGCAGTTATT	60.245	43.478	0.00	0.00	0.00	1.40
290	307	2.923035	ACGTAGTGCTGCCCCAGT	60.923	61.111	0.00	0.00	42.51	4.00
306	323	1.376543	CAGTAGGCAGAAGCACCATG	58.623	55.000	0.00	0.00	44.61	3.66
412	429	9.352784	TGTTTAATTGTAGCATAATCTTTGTGC	57.647	29.630	1.26	1.26	46.60	4.57
426	443	0.538516	TTGTGCCGGCACCACTTTAT	60.539	50.000	46.85	0.00	45.63	1.40
499	516	0.159554	CGCAAGCGCTCATATACACG	59.840	55.000	12.06	2.00	35.30	4.49
504	521	2.434688	CGCTCATATACACGCGCAT	58.565	52.632	5.73	0.00	39.11	4.73
505	522	1.613270	CGCTCATATACACGCGCATA	58.387	50.000	5.73	1.53	39.11	3.14
506	523	1.317611	CGCTCATATACACGCGCATAC	59.682	52.381	5.73	0.00	39.11	2.39
507	524	2.324860	GCTCATATACACGCGCATACA	58.675	47.619	5.73	0.00	0.00	2.29
508	525	2.090658	GCTCATATACACGCGCATACAC	59.909	50.000	5.73	0.00	0.00	2.90
509	526	3.565516	CTCATATACACGCGCATACACT	58.434	45.455	5.73	0.00	0.00	3.55
510	527	3.561503	TCATATACACGCGCATACACTC	58.438	45.455	5.73	0.00	0.00	3.51
511	528	3.003897	TCATATACACGCGCATACACTCA	59.996	43.478	5.73	0.00	0.00	3.41
512	529	1.556564	ATACACGCGCATACACTCAC	58.443	50.000	5.73	0.00	0.00	3.51
513	530	0.457166	TACACGCGCATACACTCACC	60.457	55.000	5.73	0.00	0.00	4.02
514	531	2.125673	ACGCGCATACACTCACCC	60.126	61.111	5.73	0.00	0.00	4.61
515	532	2.184322	CGCGCATACACTCACCCT	59.816	61.111	8.75	0.00	0.00	4.34
516	533	1.447838	CGCGCATACACTCACCCTT	60.448	57.895	8.75	0.00	0.00	3.95
517	534	0.179121	CGCGCATACACTCACCCTTA	60.179	55.000	8.75	0.00	0.00	2.69
518	535	1.538204	CGCGCATACACTCACCCTTAT	60.538	52.381	8.75	0.00	0.00	1.73
519	536	2.287970	CGCGCATACACTCACCCTTATA	60.288	50.000	8.75	0.00	0.00	0.98
520	537	3.724374	GCGCATACACTCACCCTTATAA	58.276	45.455	0.30	0.00	0.00	0.98
521	538	4.124238	GCGCATACACTCACCCTTATAAA	58.876	43.478	0.30	0.00	0.00	1.40
522	539	4.025145	GCGCATACACTCACCCTTATAAAC	60.025	45.833	0.30	0.00	0.00	2.01
523	540	4.208460	CGCATACACTCACCCTTATAAACG	59.792	45.833	0.00	0.00	0.00	3.60
524	541	4.025145	GCATACACTCACCCTTATAAACGC	60.025	45.833	0.00	0.00	0.00	4.84
525	542	3.688694	ACACTCACCCTTATAAACGCA	57.311	42.857	0.00	0.00	0.00	5.24
526	543	3.332034	ACACTCACCCTTATAAACGCAC	58.668	45.455	0.00	0.00	0.00	5.34
527	544	3.244284	ACACTCACCCTTATAAACGCACA	60.244	43.478	0.00	0.00	0.00	4.57
528	545	3.124636	CACTCACCCTTATAAACGCACAC	59.875	47.826	0.00	0.00	0.00	3.82
529	546	3.244284	ACTCACCCTTATAAACGCACACA	60.244	43.478	0.00	0.00	0.00	3.72
530	547	3.068560	TCACCCTTATAAACGCACACAC	58.931	45.455	0.00	0.00	0.00	3.82
531	548	2.070783	ACCCTTATAAACGCACACACG	58.929	47.619	0.00	0.00	39.50	4.49
532	549	1.201987	CCCTTATAAACGCACACACGC	60.202	52.381	0.00	0.00	36.19	5.34
533	550	1.461512	CCTTATAAACGCACACACGCA	59.538	47.619	0.00	0.00	36.19	5.24
536	553	0.871722	ATAAACGCACACACGCACAT	59.128	45.000	0.00	0.00	36.19	3.21
556	573	0.674534	CGTACCCCTATGAGCACCTC	59.325	60.000	0.00	0.00	0.00	3.85
573	590	1.878656	CTCCGAAAGACTGAGCCGGT	61.879	60.000	1.90	0.00	40.87	5.28
583	600	4.013728	AGACTGAGCCGGTATATCATCTC	58.986	47.826	1.90	0.00	0.00	2.75
612	633	8.116651	TGCATTTTGGCTCAAGTAATTAAGTA	57.883	30.769	0.00	0.00	34.04	2.24
1328	4117	4.444081	CGACGACCCCTCCCTCCT	62.444	72.222	0.00	0.00	0.00	3.69
1477	4266	3.005539	AGATCTGGGCCGTGCTGT	61.006	61.111	0.00	0.00	0.00	4.40
1515	4304	0.392706	TCATGACACGCCTCAACACT	59.607	50.000	0.00	0.00	0.00	3.55
1761	4553	2.357154	CGATTTTGACTGGGAGGGGAAT	60.357	50.000	0.00	0.00	0.00	3.01
1899	4691	3.120199	CGCATGTTGAAACTGAAGGTAGG	60.120	47.826	0.00	0.00	0.00	3.18
2019	4811	2.340809	CCCGGCGAACACTACACA	59.659	61.111	9.30	0.00	0.00	3.72
2169	14229	3.627395	AGATTTCAGCCGTACATTCCA	57.373	42.857	0.00	0.00	0.00	3.53
2195	14264	4.957759	TTGCGGAGAAGCCTAAATAAAC	57.042	40.909	0.00	0.00	36.02	2.01
2243	14312	0.610232	GGCATGGCTCCAGTGACTTT	60.610	55.000	12.86	0.00	0.00	2.66
2501	14571	2.164624	CTCCTTTGTACTCCCTCTGTCG	59.835	54.545	0.00	0.00	0.00	4.35
2732	14802	2.287487	TGCCACACATGTTCAATGTTCG	60.287	45.455	0.00	0.00	0.00	3.95

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
30	38	6.460781	TCCTTTCTATGCAAGACTTTACGAA	58.539	36.000	0.00	0.00	32.51	3.85
31	39	6.032956	TCCTTTCTATGCAAGACTTTACGA	57.967	37.500	0.00	0.00	32.51	3.43
32	40	5.220491	GCTCCTTTCTATGCAAGACTTTACG	60.220	44.000	0.00	0.00	32.51	3.18
33	41	5.643777	TGCTCCTTTCTATGCAAGACTTTAC	59.356	40.000	0.00	0.00	32.51	2.01
34	42	5.804639	TGCTCCTTTCTATGCAAGACTTTA	58.195	37.500	0.00	0.00	32.51	1.85
35	43	4.655963	TGCTCCTTTCTATGCAAGACTTT	58.344	39.130	0.00	0.00	32.51	2.66
36	44	4.292186	TGCTCCTTTCTATGCAAGACTT	57.708	40.909	0.00	0.00	32.51	3.01
129	146	6.424509	TGCAGCAAAATTTAAGTTGATTCAGG	59.575	34.615	10.29	0.00	0.00	3.86
139	156	3.498018	GGTGGGTTGCAGCAAAATTTAAG	59.502	43.478	10.11	0.00	0.00	1.85
150	167	1.601759	CCAGACAGGTGGGTTGCAG	60.602	63.158	0.00	0.00	33.46	4.41
166	183	3.570550	GTGTAATGGTTTGGTACTTGCCA	59.429	43.478	0.00	0.00	36.62	4.92
167	184	3.570550	TGTGTAATGGTTTGGTACTTGCC	59.429	43.478	0.00	0.00	0.00	4.52
173	190	2.108425	TGCCCTGTGTAATGGTTTGGTA	59.892	45.455	0.00	0.00	0.00	3.25
178	195	2.028203	GCAATTGCCCTGTGTAATGGTT	60.028	45.455	20.06	0.00	34.31	3.67
236	253	5.568685	TTTTATAGCGGCAAATAACTGCA	57.431	34.783	1.45	0.00	44.52	4.41
237	254	7.306574	GGAAATTTTATAGCGGCAAATAACTGC	60.307	37.037	1.45	0.00	41.85	4.40
238	255	7.704472	TGGAAATTTTATAGCGGCAAATAACTG	59.296	33.333	1.45	0.00	0.00	3.16
239	256	7.777095	TGGAAATTTTATAGCGGCAAATAACT	58.223	30.769	1.45	0.00	0.00	2.24
240	257	7.995463	TGGAAATTTTATAGCGGCAAATAAC	57.005	32.000	1.45	0.00	0.00	1.89
241	258	8.417106	TCATGGAAATTTTATAGCGGCAAATAA	58.583	29.630	1.45	3.25	0.00	1.40
242	259	7.946207	TCATGGAAATTTTATAGCGGCAAATA	58.054	30.769	1.45	0.00	0.00	1.40
243	260	6.815089	TCATGGAAATTTTATAGCGGCAAAT	58.185	32.000	1.45	0.00	0.00	2.32
244	261	6.214191	TCATGGAAATTTTATAGCGGCAAA	57.786	33.333	1.45	0.00	0.00	3.68
245	262	5.843673	TCATGGAAATTTTATAGCGGCAA	57.156	34.783	1.45	0.00	0.00	4.52
288	305	0.393537	GCATGGTGCTTCTGCCTACT	60.394	55.000	0.00	0.00	40.96	2.57
290	307	4.643795	GCATGGTGCTTCTGCCTA	57.356	55.556	0.00	0.00	40.96	3.93
306	323	6.683974	TCAAATATTGTTGCTTCCTAGAGC	57.316	37.500	0.00	0.00	43.00	4.09
475	492	0.103026	ATATGAGCGCTTGCGTCTGA	59.897	50.000	13.26	8.64	45.69	3.27
499	516	2.240493	ATAAGGGTGAGTGTATGCGC	57.760	50.000	0.00	0.00	0.00	6.09
504	521	4.021280	TGTGCGTTTATAAGGGTGAGTGTA	60.021	41.667	0.00	0.00	0.00	2.90
505	522	3.244284	TGTGCGTTTATAAGGGTGAGTGT	60.244	43.478	0.00	0.00	0.00	3.55
506	523	3.124636	GTGTGCGTTTATAAGGGTGAGTG	59.875	47.826	0.00	0.00	0.00	3.51
507	524	3.244284	TGTGTGCGTTTATAAGGGTGAGT	60.244	43.478	0.00	0.00	0.00	3.41
508	525	3.124636	GTGTGTGCGTTTATAAGGGTGAG	59.875	47.826	0.00	0.00	0.00	3.51
509	526	3.068560	GTGTGTGCGTTTATAAGGGTGA	58.931	45.455	0.00	0.00	0.00	4.02
510	527	2.159761	CGTGTGTGCGTTTATAAGGGTG	60.160	50.000	0.00	0.00	0.00	4.61
511	528	2.070783	CGTGTGTGCGTTTATAAGGGT	58.929	47.619	0.00	0.00	0.00	4.34
512	529	1.201987	GCGTGTGTGCGTTTATAAGGG	60.202	52.381	0.00	0.00	0.00	3.95
513	530	1.461512	TGCGTGTGTGCGTTTATAAGG	59.538	47.619	0.00	0.00	37.81	2.69
514	531	2.096664	TGTGCGTGTGTGCGTTTATAAG	60.097	45.455	0.00	0.00	37.81	1.73
515	532	1.865340	TGTGCGTGTGTGCGTTTATAA	59.135	42.857	0.00	0.00	37.81	0.98
516	533	1.499049	TGTGCGTGTGTGCGTTTATA	58.501	45.000	0.00	0.00	37.81	0.98
517	534	0.871722	ATGTGCGTGTGTGCGTTTAT	59.128	45.000	0.00	0.00	37.81	1.40
518	535	0.233590	GATGTGCGTGTGTGCGTTTA	59.766	50.000	0.00	0.00	37.81	2.01
519	536	1.010125	GATGTGCGTGTGTGCGTTT	60.010	52.632	0.00	0.00	37.81	3.60
520	537	2.631428	GATGTGCGTGTGTGCGTT	59.369	55.556	0.00	0.00	37.81	4.84
521	538	3.701530	CGATGTGCGTGTGTGCGT	61.702	61.111	0.00	0.00	37.81	5.24
531	548	1.605712	GCTCATAGGGGTACGATGTGC	60.606	57.143	0.00	0.00	41.82	4.57
532	549	1.686587	TGCTCATAGGGGTACGATGTG	59.313	52.381	0.00	0.00	34.28	3.21
533	550	1.687123	GTGCTCATAGGGGTACGATGT	59.313	52.381	0.00	0.00	34.28	3.06
536	553	0.260816	AGGTGCTCATAGGGGTACGA	59.739	55.000	0.00	0.00	0.00	3.43
541	558	1.048724	TTCGGAGGTGCTCATAGGGG	61.049	60.000	0.00	0.00	31.08	4.79
556	573	0.460311	ATACCGGCTCAGTCTTTCGG	59.540	55.000	0.00	0.00	45.42	4.30
573	590	6.656270	AGCCAAAATGCATTCGAGATGATATA	59.344	34.615	13.38	0.00	0.00	0.86
583	600	2.950433	ACTTGAGCCAAAATGCATTCG	58.050	42.857	13.38	7.11	0.00	3.34
920	3709	0.101219	GGGTTTTGATGAGATGCGGC	59.899	55.000	0.00	0.00	0.00	6.53
1344	4133	2.257371	GTGACGTCGCAGTAGCCA	59.743	61.111	23.67	0.00	37.52	4.75
1477	4266	0.400213	ATCTTGTTTCGGGGCACAGA	59.600	50.000	0.00	0.00	0.00	3.41
1761	4553	1.409064	GTCACCATCCAGCGTATCAGA	59.591	52.381	0.00	0.00	0.00	3.27
1829	4621	4.142600	GCCCGATGAAACCATTATAGATGC	60.143	45.833	0.00	0.00	0.00	3.91
2019	4811	0.316522	CTGGATGGATCGCGATCAGT	59.683	55.000	40.62	30.77	39.54	3.41
2169	14229	2.489938	TAGGCTTCTCCGCAAAACAT	57.510	45.000	0.00	0.00	40.77	2.71
2195	14264	3.314553	CAAACATGAAGCTGCTCCAAAG	58.685	45.455	1.00	0.00	0.00	2.77
2243	14312	6.233434	GCCATACCAACATCTGATTCTCATA	58.767	40.000	0.00	0.00	0.00	2.15
2501	14571	4.327680	ACTCCCTCTGTCTTACATTTTGC	58.672	43.478	0.00	0.00	0.00	3.68
2621	14691	3.098377	TGACACCATGCAGGCATATTTT	58.902	40.909	6.42	0.00	43.14	1.82
2732	14802	1.678970	GGGCAAGGGTGATGGTGAC	60.679	63.158	0.00	0.00	0.00	3.67

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.