Multiple sequence alignment - TraesCS1D01G437800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G437800 chr1D 100.000 3185 0 0 1 3185 485094202 485091018 0.000000e+00 5882.0
1 TraesCS1D01G437800 chr1D 79.657 1750 243 55 658 2331 485103454 485101742 0.000000e+00 1155.0
2 TraesCS1D01G437800 chr1A 95.255 1370 50 5 1198 2559 582361558 582360196 0.000000e+00 2156.0
3 TraesCS1D01G437800 chr1A 79.189 1701 249 51 703 2331 582416091 582414424 0.000000e+00 1083.0
4 TraesCS1D01G437800 chr1A 95.229 524 24 1 2662 3185 582360009 582359487 0.000000e+00 828.0
5 TraesCS1D01G437800 chr1A 92.650 517 22 6 659 1162 582362065 582361552 0.000000e+00 730.0
6 TraesCS1D01G437800 chr1A 79.095 995 168 28 1046 2024 582295649 582294679 0.000000e+00 649.0
7 TraesCS1D01G437800 chr1A 80.159 378 65 8 1089 1464 582227789 582227420 1.130000e-69 274.0
8 TraesCS1D01G437800 chr1A 80.516 349 55 8 2137 2478 582281949 582281607 4.080000e-64 255.0
9 TraesCS1D01G437800 chr1A 92.486 173 13 0 1050 1222 582282153 582281981 6.820000e-62 248.0
10 TraesCS1D01G437800 chr1A 92.208 77 6 0 558 634 355722989 355722913 3.360000e-20 110.0
11 TraesCS1D01G437800 chr1B 92.906 1029 56 7 1276 2297 675545955 675544937 0.000000e+00 1480.0
12 TraesCS1D01G437800 chr1B 80.026 1552 231 40 833 2320 675555708 675554172 0.000000e+00 1075.0
13 TraesCS1D01G437800 chr1B 90.054 553 42 10 2636 3185 675544662 675544120 0.000000e+00 704.0
14 TraesCS1D01G437800 chr1B 86.508 630 36 19 657 1283 675550225 675549642 0.000000e+00 647.0
15 TraesCS1D01G437800 chr1B 93.262 282 16 2 2326 2604 675544938 675544657 2.290000e-111 412.0
16 TraesCS1D01G437800 chr1B 92.308 143 9 2 2 144 532465603 532465743 5.390000e-48 202.0
17 TraesCS1D01G437800 chr1B 88.971 136 14 1 1087 1222 660012993 660012859 1.970000e-37 167.0
18 TraesCS1D01G437800 chr1B 79.048 210 41 3 2159 2365 675388604 675388395 1.190000e-29 141.0
19 TraesCS1D01G437800 chr1B 95.181 83 4 0 558 640 482708323 482708241 7.170000e-27 132.0
20 TraesCS1D01G437800 chr3D 90.288 278 8 4 142 418 107043540 107043799 2.350000e-91 346.0
21 TraesCS1D01G437800 chr7D 88.396 293 14 13 132 421 101582731 101583006 5.090000e-88 335.0
22 TraesCS1D01G437800 chrUn 89.324 281 9 6 138 415 68758076 68758338 1.830000e-87 333.0
23 TraesCS1D01G437800 chrUn 88.356 292 11 8 130 416 108799225 108799498 2.370000e-86 329.0
24 TraesCS1D01G437800 chr2D 88.542 288 12 9 142 425 52060021 52060291 2.370000e-86 329.0
25 TraesCS1D01G437800 chr2D 89.209 278 9 5 142 415 204112944 204112684 8.520000e-86 327.0
26 TraesCS1D01G437800 chr3B 88.929 280 11 5 138 415 20029249 20029510 8.520000e-86 327.0
27 TraesCS1D01G437800 chr3B 90.278 72 7 0 560 631 610223358 610223287 9.410000e-16 95.3
28 TraesCS1D01G437800 chr2B 87.713 293 15 8 132 420 692150018 692149743 3.960000e-84 322.0
29 TraesCS1D01G437800 chr2B 86.070 201 9 6 218 416 449382959 449382776 6.970000e-47 198.0
30 TraesCS1D01G437800 chr2B 95.745 47 2 0 96 142 742463452 742463406 3.410000e-10 76.8
31 TraesCS1D01G437800 chr6B 88.571 280 11 8 142 417 339721471 339721209 1.430000e-83 320.0
32 TraesCS1D01G437800 chr6A 87.629 291 13 10 134 418 298562667 298562940 1.840000e-82 316.0
33 TraesCS1D01G437800 chr5A 87.241 290 16 7 129 415 167118721 167118992 8.580000e-81 311.0
34 TraesCS1D01G437800 chr5A 87.500 280 16 11 141 417 449776697 449776434 3.990000e-79 305.0
35 TraesCS1D01G437800 chr4A 86.230 305 18 12 142 442 239032694 239032410 3.090000e-80 309.0
36 TraesCS1D01G437800 chr4A 85.862 290 17 11 142 425 538911014 538911285 1.450000e-73 287.0
37 TraesCS1D01G437800 chr4D 85.666 293 16 12 142 428 8156565 8156837 5.200000e-73 285.0
38 TraesCS1D01G437800 chr7B 84.880 291 21 10 142 428 79373168 79373439 4.050000e-69 272.0
39 TraesCS1D01G437800 chr6D 86.022 279 7 10 142 415 130079104 130078853 1.460000e-68 270.0
40 TraesCS1D01G437800 chr4B 92.308 143 10 1 2 144 628994663 628994804 5.390000e-48 202.0
41 TraesCS1D01G437800 chr4B 92.308 143 10 1 2 144 629032430 629032571 5.390000e-48 202.0
42 TraesCS1D01G437800 chr4B 90.909 143 12 1 2 144 628968890 628969031 1.170000e-44 191.0
43 TraesCS1D01G437800 chr3A 90.972 144 11 2 2 144 372063214 372063356 3.240000e-45 193.0
44 TraesCS1D01G437800 chr3A 93.976 83 5 0 558 640 372063693 372063775 3.340000e-25 126.0
45 TraesCS1D01G437800 chr5D 84.564 149 17 1 2 144 480742865 480742717 3.310000e-30 143.0
46 TraesCS1D01G437800 chr5D 88.679 53 6 0 90 142 510907194 510907246 7.370000e-07 65.8
47 TraesCS1D01G437800 chr5B 90.244 82 8 0 559 640 9006249 9006330 1.210000e-19 108.0
48 TraesCS1D01G437800 chr7A 90.164 61 5 1 85 144 17654327 17654387 9.470000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G437800 chr1D 485091018 485094202 3184 True 5882.0 5882 100.0000 1 3185 1 chr1D.!!$R1 3184
1 TraesCS1D01G437800 chr1D 485101742 485103454 1712 True 1155.0 1155 79.6570 658 2331 1 chr1D.!!$R2 1673
2 TraesCS1D01G437800 chr1A 582359487 582362065 2578 True 1238.0 2156 94.3780 659 3185 3 chr1A.!!$R6 2526
3 TraesCS1D01G437800 chr1A 582414424 582416091 1667 True 1083.0 1083 79.1890 703 2331 1 chr1A.!!$R4 1628
4 TraesCS1D01G437800 chr1A 582294679 582295649 970 True 649.0 649 79.0950 1046 2024 1 chr1A.!!$R3 978
5 TraesCS1D01G437800 chr1A 582281607 582282153 546 True 251.5 255 86.5010 1050 2478 2 chr1A.!!$R5 1428
6 TraesCS1D01G437800 chr1B 675544120 675555708 11588 True 863.6 1480 88.5512 657 3185 5 chr1B.!!$R4 2528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
636 637 0.105408 TTTCTAGTTATCCGCCGGCC 59.895 55.0 23.46 5.24 0.0 6.13 F
751 753 0.172578 GTGTTTTATCCTTGGGCCGC 59.827 55.0 0.00 0.00 0.0 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1774 11177 0.423544 ATCCTCCTCCAGGTTTCCCT 59.576 55.0 0.00 0.00 43.95 4.20 R
2551 11968 1.047801 TGTGTTCTCAGGCTAGCACA 58.952 50.0 18.24 8.18 34.95 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.376808 ATTCTGCGACAAGACCTCTG 57.623 50.000 0.00 0.00 0.00 3.35
20 21 1.040646 TTCTGCGACAAGACCTCTGT 58.959 50.000 0.00 0.00 0.00 3.41
21 22 1.040646 TCTGCGACAAGACCTCTGTT 58.959 50.000 0.00 0.00 0.00 3.16
22 23 1.143305 CTGCGACAAGACCTCTGTTG 58.857 55.000 0.00 0.00 0.00 3.33
23 24 0.880278 TGCGACAAGACCTCTGTTGC 60.880 55.000 8.01 8.01 41.83 4.17
24 25 0.880278 GCGACAAGACCTCTGTTGCA 60.880 55.000 9.74 0.00 41.30 4.08
25 26 1.581934 CGACAAGACCTCTGTTGCAA 58.418 50.000 0.00 0.00 0.00 4.08
26 27 1.939934 CGACAAGACCTCTGTTGCAAA 59.060 47.619 0.00 0.00 0.00 3.68
27 28 2.032549 CGACAAGACCTCTGTTGCAAAG 60.033 50.000 0.00 1.26 0.00 2.77
28 29 3.206150 GACAAGACCTCTGTTGCAAAGA 58.794 45.455 0.00 5.96 0.00 2.52
29 30 3.620488 ACAAGACCTCTGTTGCAAAGAA 58.380 40.909 0.00 0.00 0.00 2.52
30 31 4.016444 ACAAGACCTCTGTTGCAAAGAAA 58.984 39.130 0.00 0.00 0.00 2.52
31 32 4.462483 ACAAGACCTCTGTTGCAAAGAAAA 59.538 37.500 0.00 0.00 0.00 2.29
32 33 5.047377 ACAAGACCTCTGTTGCAAAGAAAAA 60.047 36.000 0.00 0.00 0.00 1.94
55 56 3.923017 ATGCTACAAGACCTTTGTTGC 57.077 42.857 15.90 15.90 46.20 4.17
57 58 3.708563 GCTACAAGACCTTTGTTGCAA 57.291 42.857 17.21 0.00 45.64 4.08
58 59 4.040445 GCTACAAGACCTTTGTTGCAAA 57.960 40.909 17.21 0.00 45.64 3.68
59 60 4.429108 GCTACAAGACCTTTGTTGCAAAA 58.571 39.130 17.21 0.00 45.64 2.44
60 61 4.867608 GCTACAAGACCTTTGTTGCAAAAA 59.132 37.500 17.21 0.00 45.64 1.94
81 82 7.636150 AAAAATCTGCAACTAGACATATGCT 57.364 32.000 1.58 3.84 39.49 3.79
82 83 6.615264 AAATCTGCAACTAGACATATGCTG 57.385 37.500 1.58 3.67 39.49 4.41
83 84 4.743057 TCTGCAACTAGACATATGCTGT 57.257 40.909 1.58 0.67 42.15 4.40
84 85 5.852282 TCTGCAACTAGACATATGCTGTA 57.148 39.130 1.58 0.00 38.54 2.74
85 86 6.220726 TCTGCAACTAGACATATGCTGTAA 57.779 37.500 1.58 0.00 38.54 2.41
86 87 6.639563 TCTGCAACTAGACATATGCTGTAAA 58.360 36.000 1.58 0.00 38.54 2.01
87 88 7.102993 TCTGCAACTAGACATATGCTGTAAAA 58.897 34.615 1.58 0.00 38.54 1.52
88 89 7.278646 TCTGCAACTAGACATATGCTGTAAAAG 59.721 37.037 1.58 0.00 38.54 2.27
89 90 6.878923 TGCAACTAGACATATGCTGTAAAAGT 59.121 34.615 1.58 0.00 38.54 2.66
90 91 7.390440 TGCAACTAGACATATGCTGTAAAAGTT 59.610 33.333 1.58 4.90 38.54 2.66
91 92 8.237267 GCAACTAGACATATGCTGTAAAAGTTT 58.763 33.333 1.58 0.00 38.54 2.66
92 93 9.760660 CAACTAGACATATGCTGTAAAAGTTTC 57.239 33.333 1.58 0.00 38.54 2.78
93 94 9.726438 AACTAGACATATGCTGTAAAAGTTTCT 57.274 29.630 1.58 0.00 38.54 2.52
97 98 9.502091 AGACATATGCTGTAAAAGTTTCTACAA 57.498 29.630 1.58 1.34 38.54 2.41
104 105 8.726988 TGCTGTAAAAGTTTCTACAATATCACC 58.273 33.333 10.06 0.00 0.00 4.02
105 106 8.182227 GCTGTAAAAGTTTCTACAATATCACCC 58.818 37.037 10.06 0.00 0.00 4.61
106 107 9.226606 CTGTAAAAGTTTCTACAATATCACCCA 57.773 33.333 10.06 0.00 0.00 4.51
107 108 9.747898 TGTAAAAGTTTCTACAATATCACCCAT 57.252 29.630 7.67 0.00 0.00 4.00
109 110 8.650143 AAAAGTTTCTACAATATCACCCATGT 57.350 30.769 0.00 0.00 0.00 3.21
110 111 8.650143 AAAGTTTCTACAATATCACCCATGTT 57.350 30.769 0.00 0.00 0.00 2.71
111 112 7.630242 AGTTTCTACAATATCACCCATGTTG 57.370 36.000 0.00 0.00 39.07 3.33
112 113 6.095440 AGTTTCTACAATATCACCCATGTTGC 59.905 38.462 0.00 0.00 37.15 4.17
113 114 5.109500 TCTACAATATCACCCATGTTGCA 57.891 39.130 0.00 0.00 37.15 4.08
114 115 5.504853 TCTACAATATCACCCATGTTGCAA 58.495 37.500 0.00 0.00 37.15 4.08
115 116 5.948758 TCTACAATATCACCCATGTTGCAAA 59.051 36.000 0.00 0.00 37.15 3.68
116 117 5.480642 ACAATATCACCCATGTTGCAAAA 57.519 34.783 0.00 0.00 37.15 2.44
117 118 5.481105 ACAATATCACCCATGTTGCAAAAG 58.519 37.500 0.00 0.00 37.15 2.27
118 119 5.011943 ACAATATCACCCATGTTGCAAAAGT 59.988 36.000 0.00 0.00 37.15 2.66
119 120 3.665745 ATCACCCATGTTGCAAAAGTC 57.334 42.857 0.00 0.00 0.00 3.01
120 121 1.686052 TCACCCATGTTGCAAAAGTCC 59.314 47.619 0.00 0.00 0.00 3.85
121 122 1.688197 CACCCATGTTGCAAAAGTCCT 59.312 47.619 0.00 0.00 0.00 3.85
122 123 2.102925 CACCCATGTTGCAAAAGTCCTT 59.897 45.455 0.00 0.00 0.00 3.36
123 124 2.365293 ACCCATGTTGCAAAAGTCCTTC 59.635 45.455 0.00 0.00 0.00 3.46
124 125 2.289010 CCCATGTTGCAAAAGTCCTTCC 60.289 50.000 0.00 0.00 0.00 3.46
125 126 2.607771 CCATGTTGCAAAAGTCCTTCCG 60.608 50.000 0.00 0.00 0.00 4.30
126 127 0.383949 TGTTGCAAAAGTCCTTCCGC 59.616 50.000 0.00 0.00 0.00 5.54
127 128 0.383949 GTTGCAAAAGTCCTTCCGCA 59.616 50.000 0.00 0.65 0.00 5.69
128 129 1.107114 TTGCAAAAGTCCTTCCGCAA 58.893 45.000 0.00 10.35 37.32 4.85
129 130 0.383949 TGCAAAAGTCCTTCCGCAAC 59.616 50.000 0.00 0.00 30.13 4.17
130 131 0.383949 GCAAAAGTCCTTCCGCAACA 59.616 50.000 0.00 0.00 0.00 3.33
131 132 1.000274 GCAAAAGTCCTTCCGCAACAT 60.000 47.619 0.00 0.00 0.00 2.71
132 133 2.922335 GCAAAAGTCCTTCCGCAACATC 60.922 50.000 0.00 0.00 0.00 3.06
133 134 2.270352 AAAGTCCTTCCGCAACATCA 57.730 45.000 0.00 0.00 0.00 3.07
134 135 2.496899 AAGTCCTTCCGCAACATCAT 57.503 45.000 0.00 0.00 0.00 2.45
135 136 2.029838 AGTCCTTCCGCAACATCATC 57.970 50.000 0.00 0.00 0.00 2.92
136 137 1.556911 AGTCCTTCCGCAACATCATCT 59.443 47.619 0.00 0.00 0.00 2.90
137 138 2.766263 AGTCCTTCCGCAACATCATCTA 59.234 45.455 0.00 0.00 0.00 1.98
138 139 3.389329 AGTCCTTCCGCAACATCATCTAT 59.611 43.478 0.00 0.00 0.00 1.98
139 140 3.496130 GTCCTTCCGCAACATCATCTATG 59.504 47.826 0.00 0.00 41.74 2.23
151 152 5.065704 CATCATCTATGTTACTCCCTCCG 57.934 47.826 0.00 0.00 0.00 4.63
152 153 4.180377 TCATCTATGTTACTCCCTCCGT 57.820 45.455 0.00 0.00 0.00 4.69
153 154 4.543689 TCATCTATGTTACTCCCTCCGTT 58.456 43.478 0.00 0.00 0.00 4.44
154 155 5.698104 TCATCTATGTTACTCCCTCCGTTA 58.302 41.667 0.00 0.00 0.00 3.18
155 156 6.312529 TCATCTATGTTACTCCCTCCGTTAT 58.687 40.000 0.00 0.00 0.00 1.89
156 157 6.781014 TCATCTATGTTACTCCCTCCGTTATT 59.219 38.462 0.00 0.00 0.00 1.40
157 158 7.289317 TCATCTATGTTACTCCCTCCGTTATTT 59.711 37.037 0.00 0.00 0.00 1.40
158 159 7.427989 TCTATGTTACTCCCTCCGTTATTTT 57.572 36.000 0.00 0.00 0.00 1.82
159 160 8.537728 TCTATGTTACTCCCTCCGTTATTTTA 57.462 34.615 0.00 0.00 0.00 1.52
160 161 8.636213 TCTATGTTACTCCCTCCGTTATTTTAG 58.364 37.037 0.00 0.00 0.00 1.85
161 162 6.610075 TGTTACTCCCTCCGTTATTTTAGT 57.390 37.500 0.00 0.00 0.00 2.24
162 163 6.633856 TGTTACTCCCTCCGTTATTTTAGTC 58.366 40.000 0.00 0.00 0.00 2.59
163 164 6.438425 TGTTACTCCCTCCGTTATTTTAGTCT 59.562 38.462 0.00 0.00 0.00 3.24
164 165 5.340439 ACTCCCTCCGTTATTTTAGTCTG 57.660 43.478 0.00 0.00 0.00 3.51
165 166 4.120589 CTCCCTCCGTTATTTTAGTCTGC 58.879 47.826 0.00 0.00 0.00 4.26
166 167 3.516300 TCCCTCCGTTATTTTAGTCTGCA 59.484 43.478 0.00 0.00 0.00 4.41
167 168 4.163458 TCCCTCCGTTATTTTAGTCTGCAT 59.837 41.667 0.00 0.00 0.00 3.96
168 169 5.364446 TCCCTCCGTTATTTTAGTCTGCATA 59.636 40.000 0.00 0.00 0.00 3.14
169 170 6.042781 TCCCTCCGTTATTTTAGTCTGCATAT 59.957 38.462 0.00 0.00 0.00 1.78
170 171 7.233962 TCCCTCCGTTATTTTAGTCTGCATATA 59.766 37.037 0.00 0.00 0.00 0.86
171 172 7.876068 CCCTCCGTTATTTTAGTCTGCATATAA 59.124 37.037 0.00 0.00 0.00 0.98
172 173 8.926710 CCTCCGTTATTTTAGTCTGCATATAAG 58.073 37.037 0.00 0.00 0.00 1.73
173 174 8.827177 TCCGTTATTTTAGTCTGCATATAAGG 57.173 34.615 0.00 0.00 0.00 2.69
174 175 8.426489 TCCGTTATTTTAGTCTGCATATAAGGT 58.574 33.333 0.00 0.00 0.00 3.50
175 176 9.052759 CCGTTATTTTAGTCTGCATATAAGGTT 57.947 33.333 0.00 0.00 0.00 3.50
179 180 8.823220 ATTTTAGTCTGCATATAAGGTTTGGT 57.177 30.769 0.00 0.00 0.00 3.67
180 181 7.859325 TTTAGTCTGCATATAAGGTTTGGTC 57.141 36.000 0.00 0.00 0.00 4.02
181 182 5.435686 AGTCTGCATATAAGGTTTGGTCA 57.564 39.130 0.00 0.00 0.00 4.02
182 183 5.815581 AGTCTGCATATAAGGTTTGGTCAA 58.184 37.500 0.00 0.00 0.00 3.18
183 184 6.245408 AGTCTGCATATAAGGTTTGGTCAAA 58.755 36.000 0.00 0.00 0.00 2.69
184 185 6.375455 AGTCTGCATATAAGGTTTGGTCAAAG 59.625 38.462 0.00 0.00 0.00 2.77
185 186 6.151144 GTCTGCATATAAGGTTTGGTCAAAGT 59.849 38.462 0.00 0.00 0.00 2.66
186 187 6.374333 TCTGCATATAAGGTTTGGTCAAAGTC 59.626 38.462 0.00 0.00 0.00 3.01
187 188 6.007076 TGCATATAAGGTTTGGTCAAAGTCA 58.993 36.000 0.00 0.00 0.00 3.41
188 189 6.491745 TGCATATAAGGTTTGGTCAAAGTCAA 59.508 34.615 0.00 0.00 0.00 3.18
189 190 7.029563 GCATATAAGGTTTGGTCAAAGTCAAG 58.970 38.462 0.00 0.00 0.00 3.02
190 191 3.801114 AAGGTTTGGTCAAAGTCAAGC 57.199 42.857 0.00 0.00 0.00 4.01
191 192 3.018423 AGGTTTGGTCAAAGTCAAGCT 57.982 42.857 0.00 0.00 0.00 3.74
192 193 3.365472 AGGTTTGGTCAAAGTCAAGCTT 58.635 40.909 0.00 0.00 39.52 3.74
209 210 7.478520 TCAAGCTTTGTAGAGTTTGACTAAC 57.521 36.000 0.00 0.00 40.46 2.34
211 212 7.769044 TCAAGCTTTGTAGAGTTTGACTAACTT 59.231 33.333 0.00 0.00 47.00 2.66
212 213 8.398665 CAAGCTTTGTAGAGTTTGACTAACTTT 58.601 33.333 0.00 1.31 47.00 2.66
213 214 9.609346 AAGCTTTGTAGAGTTTGACTAACTTTA 57.391 29.630 3.78 0.37 47.00 1.85
214 215 9.780186 AGCTTTGTAGAGTTTGACTAACTTTAT 57.220 29.630 3.78 0.00 47.00 1.40
266 267 8.694581 TGAAATCAATATTATCAGATGCACCA 57.305 30.769 0.00 0.00 0.00 4.17
267 268 9.304335 TGAAATCAATATTATCAGATGCACCAT 57.696 29.630 0.00 0.00 0.00 3.55
268 269 9.569167 GAAATCAATATTATCAGATGCACCATG 57.431 33.333 0.00 0.00 0.00 3.66
269 270 8.873186 AATCAATATTATCAGATGCACCATGA 57.127 30.769 0.00 0.00 0.00 3.07
270 271 9.475620 AATCAATATTATCAGATGCACCATGAT 57.524 29.630 13.01 13.01 37.44 2.45
272 273 9.387257 TCAATATTATCAGATGCACCATGATAC 57.613 33.333 13.92 0.00 36.05 2.24
273 274 8.333186 CAATATTATCAGATGCACCATGATACG 58.667 37.037 13.92 0.00 36.05 3.06
274 275 3.758755 ATCAGATGCACCATGATACGT 57.241 42.857 8.05 0.00 32.01 3.57
275 276 3.541996 TCAGATGCACCATGATACGTT 57.458 42.857 0.00 0.00 0.00 3.99
276 277 3.872696 TCAGATGCACCATGATACGTTT 58.127 40.909 0.00 0.00 0.00 3.60
277 278 4.260985 TCAGATGCACCATGATACGTTTT 58.739 39.130 0.00 0.00 0.00 2.43
278 279 4.699735 TCAGATGCACCATGATACGTTTTT 59.300 37.500 0.00 0.00 0.00 1.94
369 370 9.442047 AATTTGGTCAAAATTTGTGTAGTTTGA 57.558 25.926 5.56 0.00 44.41 2.69
376 377 9.698309 TCAAAATTTGTGTAGTTTGACTTTGAA 57.302 25.926 5.56 0.00 35.60 2.69
377 378 9.739786 CAAAATTTGTGTAGTTTGACTTTGAAC 57.260 29.630 0.00 0.00 33.70 3.18
378 379 9.482627 AAAATTTGTGTAGTTTGACTTTGAACA 57.517 25.926 0.00 0.00 0.00 3.18
379 380 9.482627 AAATTTGTGTAGTTTGACTTTGAACAA 57.517 25.926 0.00 0.00 0.00 2.83
380 381 9.482627 AATTTGTGTAGTTTGACTTTGAACAAA 57.517 25.926 0.00 0.00 34.33 2.83
381 382 9.651913 ATTTGTGTAGTTTGACTTTGAACAAAT 57.348 25.926 0.00 0.00 38.09 2.32
382 383 8.682128 TTGTGTAGTTTGACTTTGAACAAATC 57.318 30.769 0.44 2.76 38.09 2.17
383 384 8.050778 TGTGTAGTTTGACTTTGAACAAATCT 57.949 30.769 0.44 0.00 38.09 2.40
384 385 8.519526 TGTGTAGTTTGACTTTGAACAAATCTT 58.480 29.630 0.44 0.00 38.09 2.40
385 386 9.997482 GTGTAGTTTGACTTTGAACAAATCTTA 57.003 29.630 0.44 0.00 38.09 2.10
391 392 8.894409 TTGACTTTGAACAAATCTTATATGCG 57.106 30.769 0.44 0.00 0.00 4.73
392 393 7.471721 TGACTTTGAACAAATCTTATATGCGG 58.528 34.615 0.44 0.00 0.00 5.69
393 394 7.335673 TGACTTTGAACAAATCTTATATGCGGA 59.664 33.333 0.44 0.00 0.00 5.54
394 395 7.697691 ACTTTGAACAAATCTTATATGCGGAG 58.302 34.615 0.44 0.00 0.00 4.63
395 396 7.336931 ACTTTGAACAAATCTTATATGCGGAGT 59.663 33.333 0.44 0.00 0.00 3.85
396 397 8.725405 TTTGAACAAATCTTATATGCGGAGTA 57.275 30.769 0.00 0.00 0.00 2.59
397 398 8.725405 TTGAACAAATCTTATATGCGGAGTAA 57.275 30.769 0.00 0.00 0.00 2.24
398 399 8.725405 TGAACAAATCTTATATGCGGAGTAAA 57.275 30.769 0.00 0.00 0.00 2.01
399 400 9.168451 TGAACAAATCTTATATGCGGAGTAAAA 57.832 29.630 0.00 0.00 0.00 1.52
400 401 9.997482 GAACAAATCTTATATGCGGAGTAAAAA 57.003 29.630 0.00 0.00 0.00 1.94
422 423 6.954487 AAAAACGAAGGGAGTACAAAAGAT 57.046 33.333 0.00 0.00 0.00 2.40
423 424 5.941948 AAACGAAGGGAGTACAAAAGATG 57.058 39.130 0.00 0.00 0.00 2.90
424 425 4.884668 ACGAAGGGAGTACAAAAGATGA 57.115 40.909 0.00 0.00 0.00 2.92
425 426 5.223449 ACGAAGGGAGTACAAAAGATGAA 57.777 39.130 0.00 0.00 0.00 2.57
426 427 5.238583 ACGAAGGGAGTACAAAAGATGAAG 58.761 41.667 0.00 0.00 0.00 3.02
427 428 5.011738 ACGAAGGGAGTACAAAAGATGAAGA 59.988 40.000 0.00 0.00 0.00 2.87
428 429 6.109359 CGAAGGGAGTACAAAAGATGAAGAT 58.891 40.000 0.00 0.00 0.00 2.40
429 430 7.093465 ACGAAGGGAGTACAAAAGATGAAGATA 60.093 37.037 0.00 0.00 0.00 1.98
430 431 7.928706 CGAAGGGAGTACAAAAGATGAAGATAT 59.071 37.037 0.00 0.00 0.00 1.63
431 432 8.970859 AAGGGAGTACAAAAGATGAAGATATG 57.029 34.615 0.00 0.00 0.00 1.78
432 433 8.095452 AGGGAGTACAAAAGATGAAGATATGT 57.905 34.615 0.00 0.00 0.00 2.29
433 434 8.552296 AGGGAGTACAAAAGATGAAGATATGTT 58.448 33.333 0.00 0.00 0.00 2.71
434 435 8.616076 GGGAGTACAAAAGATGAAGATATGTTG 58.384 37.037 0.00 0.00 0.00 3.33
435 436 8.125448 GGAGTACAAAAGATGAAGATATGTTGC 58.875 37.037 0.00 0.00 0.00 4.17
436 437 8.565896 AGTACAAAAGATGAAGATATGTTGCA 57.434 30.769 0.00 0.00 0.00 4.08
437 438 9.013229 AGTACAAAAGATGAAGATATGTTGCAA 57.987 29.630 0.00 0.00 0.00 4.08
438 439 9.624697 GTACAAAAGATGAAGATATGTTGCAAA 57.375 29.630 0.00 0.00 0.00 3.68
440 441 9.545105 ACAAAAGATGAAGATATGTTGCAAAAA 57.455 25.926 0.00 0.00 0.00 1.94
502 503 4.541973 AAAAATCTGCAACAAGATCCCC 57.458 40.909 0.00 0.00 35.83 4.81
503 504 3.463048 AAATCTGCAACAAGATCCCCT 57.537 42.857 0.00 0.00 35.83 4.79
504 505 3.463048 AATCTGCAACAAGATCCCCTT 57.537 42.857 0.00 0.00 35.83 3.95
505 506 2.978156 TCTGCAACAAGATCCCCTTT 57.022 45.000 0.00 0.00 31.42 3.11
506 507 2.517959 TCTGCAACAAGATCCCCTTTG 58.482 47.619 0.00 0.00 31.42 2.77
507 508 0.968405 TGCAACAAGATCCCCTTTGC 59.032 50.000 10.49 10.49 38.48 3.68
508 509 0.968405 GCAACAAGATCCCCTTTGCA 59.032 50.000 11.90 0.00 38.11 4.08
509 510 1.344114 GCAACAAGATCCCCTTTGCAA 59.656 47.619 11.90 0.00 38.11 4.08
510 511 2.224257 GCAACAAGATCCCCTTTGCAAA 60.224 45.455 12.14 12.14 38.11 3.68
511 512 3.392882 CAACAAGATCCCCTTTGCAAAC 58.607 45.455 8.05 0.00 31.42 2.93
512 513 2.676748 ACAAGATCCCCTTTGCAAACA 58.323 42.857 8.05 0.00 31.42 2.83
513 514 3.037549 ACAAGATCCCCTTTGCAAACAA 58.962 40.909 8.05 0.00 31.42 2.83
514 515 3.454082 ACAAGATCCCCTTTGCAAACAAA 59.546 39.130 8.05 0.00 43.45 2.83
515 516 4.080638 ACAAGATCCCCTTTGCAAACAAAA 60.081 37.500 8.05 0.00 44.90 2.44
516 517 4.980339 AGATCCCCTTTGCAAACAAAAT 57.020 36.364 8.05 0.00 44.90 1.82
517 518 4.898320 AGATCCCCTTTGCAAACAAAATC 58.102 39.130 8.05 9.31 44.90 2.17
518 519 4.594491 AGATCCCCTTTGCAAACAAAATCT 59.406 37.500 8.05 11.29 44.90 2.40
519 520 4.070630 TCCCCTTTGCAAACAAAATCTG 57.929 40.909 8.05 0.00 44.90 2.90
520 521 2.549329 CCCCTTTGCAAACAAAATCTGC 59.451 45.455 8.05 0.00 44.90 4.26
521 522 3.204526 CCCTTTGCAAACAAAATCTGCA 58.795 40.909 8.05 0.00 44.90 4.41
526 527 3.593096 TGCAAACAAAATCTGCAACACA 58.407 36.364 0.00 0.00 42.84 3.72
527 528 4.190001 TGCAAACAAAATCTGCAACACAT 58.810 34.783 0.00 0.00 42.84 3.21
528 529 4.034163 TGCAAACAAAATCTGCAACACATG 59.966 37.500 0.00 0.00 42.84 3.21
542 543 2.772568 CACATGCCGTGTTTCAGAAA 57.227 45.000 0.00 0.00 39.62 2.52
543 544 2.653890 CACATGCCGTGTTTCAGAAAG 58.346 47.619 0.00 0.00 39.62 2.62
544 545 1.608590 ACATGCCGTGTTTCAGAAAGG 59.391 47.619 0.00 0.00 38.01 3.11
545 546 1.608590 CATGCCGTGTTTCAGAAAGGT 59.391 47.619 0.00 0.00 0.00 3.50
546 547 2.623878 TGCCGTGTTTCAGAAAGGTA 57.376 45.000 0.00 0.00 0.00 3.08
547 548 2.920524 TGCCGTGTTTCAGAAAGGTAA 58.079 42.857 0.00 0.00 0.00 2.85
548 549 3.280295 TGCCGTGTTTCAGAAAGGTAAA 58.720 40.909 0.00 0.00 0.00 2.01
549 550 3.886505 TGCCGTGTTTCAGAAAGGTAAAT 59.113 39.130 0.00 0.00 0.00 1.40
550 551 5.064558 TGCCGTGTTTCAGAAAGGTAAATA 58.935 37.500 0.00 0.00 0.00 1.40
551 552 5.180492 TGCCGTGTTTCAGAAAGGTAAATAG 59.820 40.000 0.00 0.00 0.00 1.73
552 553 5.180680 GCCGTGTTTCAGAAAGGTAAATAGT 59.819 40.000 0.00 0.00 0.00 2.12
553 554 6.599437 CCGTGTTTCAGAAAGGTAAATAGTG 58.401 40.000 0.00 0.00 0.00 2.74
554 555 6.348213 CCGTGTTTCAGAAAGGTAAATAGTGG 60.348 42.308 0.00 0.00 0.00 4.00
555 556 6.425721 CGTGTTTCAGAAAGGTAAATAGTGGA 59.574 38.462 0.00 0.00 0.00 4.02
556 557 7.041644 CGTGTTTCAGAAAGGTAAATAGTGGAA 60.042 37.037 0.00 0.00 0.00 3.53
557 558 8.290325 GTGTTTCAGAAAGGTAAATAGTGGAAG 58.710 37.037 0.00 0.00 0.00 3.46
558 559 8.215050 TGTTTCAGAAAGGTAAATAGTGGAAGA 58.785 33.333 0.00 0.00 0.00 2.87
559 560 9.232473 GTTTCAGAAAGGTAAATAGTGGAAGAT 57.768 33.333 0.00 0.00 0.00 2.40
560 561 8.792830 TTCAGAAAGGTAAATAGTGGAAGATG 57.207 34.615 0.00 0.00 0.00 2.90
561 562 7.338710 TCAGAAAGGTAAATAGTGGAAGATGG 58.661 38.462 0.00 0.00 0.00 3.51
562 563 6.543831 CAGAAAGGTAAATAGTGGAAGATGGG 59.456 42.308 0.00 0.00 0.00 4.00
563 564 6.217693 AGAAAGGTAAATAGTGGAAGATGGGT 59.782 38.462 0.00 0.00 0.00 4.51
564 565 7.404980 AGAAAGGTAAATAGTGGAAGATGGGTA 59.595 37.037 0.00 0.00 0.00 3.69
565 566 6.749036 AGGTAAATAGTGGAAGATGGGTAG 57.251 41.667 0.00 0.00 0.00 3.18
566 567 6.449956 AGGTAAATAGTGGAAGATGGGTAGA 58.550 40.000 0.00 0.00 0.00 2.59
567 568 7.082972 AGGTAAATAGTGGAAGATGGGTAGAT 58.917 38.462 0.00 0.00 0.00 1.98
568 569 7.235812 AGGTAAATAGTGGAAGATGGGTAGATC 59.764 40.741 0.00 0.00 0.00 2.75
569 570 5.730296 AATAGTGGAAGATGGGTAGATCG 57.270 43.478 0.00 0.00 0.00 3.69
570 571 2.320781 AGTGGAAGATGGGTAGATCGG 58.679 52.381 0.00 0.00 0.00 4.18
571 572 2.091278 AGTGGAAGATGGGTAGATCGGA 60.091 50.000 0.00 0.00 0.00 4.55
572 573 2.900546 GTGGAAGATGGGTAGATCGGAT 59.099 50.000 0.00 0.00 0.00 4.18
573 574 2.899900 TGGAAGATGGGTAGATCGGATG 59.100 50.000 0.00 0.00 0.00 3.51
574 575 2.234908 GGAAGATGGGTAGATCGGATGG 59.765 54.545 0.00 0.00 0.00 3.51
575 576 3.165875 GAAGATGGGTAGATCGGATGGA 58.834 50.000 0.00 0.00 0.00 3.41
576 577 3.481559 AGATGGGTAGATCGGATGGAT 57.518 47.619 0.00 0.00 38.35 3.41
577 578 4.609866 AGATGGGTAGATCGGATGGATA 57.390 45.455 0.00 0.00 34.82 2.59
578 579 5.149584 AGATGGGTAGATCGGATGGATAT 57.850 43.478 0.00 0.00 34.82 1.63
579 580 5.144100 AGATGGGTAGATCGGATGGATATC 58.856 45.833 0.00 0.00 34.82 1.63
588 589 3.723554 GATGGATATCCTCGCGTCC 57.276 57.895 22.35 4.93 36.82 4.79
589 590 0.888619 GATGGATATCCTCGCGTCCA 59.111 55.000 22.35 15.18 44.22 4.02
590 591 1.561643 ATGGATATCCTCGCGTCCAT 58.438 50.000 22.35 18.02 44.06 3.41
591 592 0.888619 TGGATATCCTCGCGTCCATC 59.111 55.000 22.35 5.36 35.91 3.51
592 593 0.173708 GGATATCCTCGCGTCCATCC 59.826 60.000 14.97 8.91 0.00 3.51
593 594 0.888619 GATATCCTCGCGTCCATCCA 59.111 55.000 5.77 0.00 0.00 3.41
594 595 1.272490 GATATCCTCGCGTCCATCCAA 59.728 52.381 5.77 0.00 0.00 3.53
595 596 0.387929 TATCCTCGCGTCCATCCAAC 59.612 55.000 5.77 0.00 0.00 3.77
596 597 1.613317 ATCCTCGCGTCCATCCAACA 61.613 55.000 5.77 0.00 0.00 3.33
597 598 1.811266 CCTCGCGTCCATCCAACAG 60.811 63.158 5.77 0.00 0.00 3.16
598 599 2.434185 TCGCGTCCATCCAACAGC 60.434 61.111 5.77 0.00 0.00 4.40
599 600 3.499737 CGCGTCCATCCAACAGCC 61.500 66.667 0.00 0.00 0.00 4.85
600 601 2.359850 GCGTCCATCCAACAGCCA 60.360 61.111 0.00 0.00 0.00 4.75
601 602 2.401766 GCGTCCATCCAACAGCCAG 61.402 63.158 0.00 0.00 0.00 4.85
602 603 2.401766 CGTCCATCCAACAGCCAGC 61.402 63.158 0.00 0.00 0.00 4.85
603 604 2.046023 TCCATCCAACAGCCAGCG 60.046 61.111 0.00 0.00 0.00 5.18
604 605 2.046023 CCATCCAACAGCCAGCGA 60.046 61.111 0.00 0.00 0.00 4.93
605 606 2.110967 CCATCCAACAGCCAGCGAG 61.111 63.158 0.00 0.00 0.00 5.03
606 607 2.110967 CATCCAACAGCCAGCGAGG 61.111 63.158 0.00 0.00 41.84 4.63
616 617 4.363990 CAGCGAGGCGGCGGATAT 62.364 66.667 9.78 0.00 38.18 1.63
617 618 3.616721 AGCGAGGCGGCGGATATT 61.617 61.111 9.78 0.00 38.18 1.28
618 619 2.665185 GCGAGGCGGCGGATATTT 60.665 61.111 9.78 0.00 0.00 1.40
619 620 2.251642 GCGAGGCGGCGGATATTTT 61.252 57.895 9.78 0.00 0.00 1.82
620 621 1.860078 CGAGGCGGCGGATATTTTC 59.140 57.895 9.78 0.00 0.00 2.29
621 622 0.600255 CGAGGCGGCGGATATTTTCT 60.600 55.000 9.78 0.00 0.00 2.52
622 623 1.336517 CGAGGCGGCGGATATTTTCTA 60.337 52.381 9.78 0.00 0.00 2.10
623 624 2.338500 GAGGCGGCGGATATTTTCTAG 58.662 52.381 9.78 0.00 0.00 2.43
624 625 1.692519 AGGCGGCGGATATTTTCTAGT 59.307 47.619 9.78 0.00 0.00 2.57
625 626 2.104281 AGGCGGCGGATATTTTCTAGTT 59.896 45.455 9.78 0.00 0.00 2.24
626 627 3.322828 AGGCGGCGGATATTTTCTAGTTA 59.677 43.478 9.78 0.00 0.00 2.24
627 628 4.020485 AGGCGGCGGATATTTTCTAGTTAT 60.020 41.667 9.78 0.00 0.00 1.89
628 629 4.329256 GGCGGCGGATATTTTCTAGTTATC 59.671 45.833 9.78 0.00 0.00 1.75
629 630 4.329256 GCGGCGGATATTTTCTAGTTATCC 59.671 45.833 9.78 10.89 38.57 2.59
634 635 4.868734 GGATATTTTCTAGTTATCCGCCGG 59.131 45.833 0.00 0.00 33.93 6.13
635 636 1.944032 TTTTCTAGTTATCCGCCGGC 58.056 50.000 19.07 19.07 0.00 6.13
636 637 0.105408 TTTCTAGTTATCCGCCGGCC 59.895 55.000 23.46 5.24 0.00 6.13
637 638 2.049433 CTAGTTATCCGCCGGCCG 60.049 66.667 23.46 21.04 0.00 6.13
638 639 2.519063 TAGTTATCCGCCGGCCGA 60.519 61.111 30.73 21.48 40.02 5.54
639 640 2.744307 CTAGTTATCCGCCGGCCGAC 62.744 65.000 30.73 16.23 40.02 4.79
640 641 4.217159 GTTATCCGCCGGCCGACT 62.217 66.667 30.73 12.21 40.02 4.18
641 642 3.463585 TTATCCGCCGGCCGACTT 61.464 61.111 30.73 8.56 40.02 3.01
642 643 3.021473 TTATCCGCCGGCCGACTTT 62.021 57.895 30.73 7.77 40.02 2.66
643 644 2.524951 TTATCCGCCGGCCGACTTTT 62.525 55.000 30.73 11.02 40.02 2.27
644 645 2.524951 TATCCGCCGGCCGACTTTTT 62.525 55.000 30.73 9.25 40.02 1.94
751 753 0.172578 GTGTTTTATCCTTGGGCCGC 59.827 55.000 0.00 0.00 0.00 6.53
752 754 0.968393 TGTTTTATCCTTGGGCCGCC 60.968 55.000 0.00 0.00 0.00 6.13
753 755 0.968393 GTTTTATCCTTGGGCCGCCA 60.968 55.000 12.58 0.00 0.00 5.69
940 961 1.348036 CCTTCTCCTCACCTTCGGTTT 59.652 52.381 0.00 0.00 31.02 3.27
1036 1097 0.996762 GGAGGAGGAGGAGGAGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
1038 1099 1.503347 GAGGAGGAGGAGGAGGAGAAT 59.497 57.143 0.00 0.00 0.00 2.40
1039 1100 1.503347 AGGAGGAGGAGGAGGAGAATC 59.497 57.143 0.00 0.00 0.00 2.52
1086 1159 2.506061 CCTGCTCCCGGAGATCCAG 61.506 68.421 19.33 14.80 35.14 3.86
1382 10770 2.252346 GCGGCATCCTCATCTGCTG 61.252 63.158 0.00 0.00 45.55 4.41
1930 11333 2.352032 GCTAGCGGACTGTGGACCT 61.352 63.158 0.00 0.00 0.00 3.85
2264 11670 1.762957 AGATGTCGGGTATGGTCCAAG 59.237 52.381 0.00 0.00 0.00 3.61
2278 11684 5.423704 TGGTCCAAGTATCGATGGTTTTA 57.576 39.130 8.54 0.00 37.94 1.52
2334 11741 7.707035 CCAGTTATTTAGTGCTAGTACCTTCAG 59.293 40.741 7.41 0.00 0.00 3.02
2341 11751 2.493675 TGCTAGTACCTTCAGTCTGCAG 59.506 50.000 7.63 7.63 0.00 4.41
2519 11935 4.107072 TCTGGGAGATTCCTTCAGTGAAT 58.893 43.478 5.91 0.00 36.57 2.57
2551 11968 6.572519 GCATTGTGTCAACCAATACCAATAT 58.427 36.000 0.00 0.00 31.52 1.28
2559 11976 5.530915 TCAACCAATACCAATATGTGCTAGC 59.469 40.000 8.10 8.10 0.00 3.42
2563 11980 5.308014 CAATACCAATATGTGCTAGCCTGA 58.692 41.667 13.29 0.00 0.00 3.86
2576 11995 6.049149 GTGCTAGCCTGAGAACACAATTATA 58.951 40.000 13.29 0.00 0.00 0.98
2579 11998 7.775093 TGCTAGCCTGAGAACACAATTATATTT 59.225 33.333 13.29 0.00 0.00 1.40
2620 12039 9.905171 GAAGAGAATATAATTGCAATCTTTCCC 57.095 33.333 13.38 4.97 0.00 3.97
2621 12040 8.414629 AGAGAATATAATTGCAATCTTTCCCC 57.585 34.615 13.38 8.34 0.00 4.81
2622 12041 8.230306 AGAGAATATAATTGCAATCTTTCCCCT 58.770 33.333 13.38 10.06 0.00 4.79
2623 12042 8.414629 AGAATATAATTGCAATCTTTCCCCTC 57.585 34.615 13.38 2.95 0.00 4.30
2624 12043 8.006564 AGAATATAATTGCAATCTTTCCCCTCA 58.993 33.333 13.38 0.00 0.00 3.86
2625 12044 8.551682 AATATAATTGCAATCTTTCCCCTCAA 57.448 30.769 13.38 0.00 0.00 3.02
2628 12047 5.565455 ATTGCAATCTTTCCCCTCAAAAA 57.435 34.783 5.99 0.00 0.00 1.94
2683 12185 6.179906 ACCACTAGTGAAGATTGGATATGG 57.820 41.667 24.68 4.61 0.00 2.74
2755 12258 5.360591 AGTGTCCTTGTTCTGAGTAAACTG 58.639 41.667 0.00 0.00 0.00 3.16
2866 12369 6.293462 GCTACTGGAAACTTTTGTGAAGGTAG 60.293 42.308 0.00 0.00 0.00 3.18
2868 12371 5.118729 TGGAAACTTTTGTGAAGGTAGGA 57.881 39.130 0.00 0.00 0.00 2.94
2966 12469 8.690680 AAACTACAAAAATAAAGTTGAACGCA 57.309 26.923 0.00 0.00 32.69 5.24
3017 12520 6.659242 GGTTTCCTTTGAGAATGGAGTTCATA 59.341 38.462 0.00 0.00 39.39 2.15
3103 12606 7.563924 TCTTATAAGATTGTACTACTGCCCAGT 59.436 37.037 11.24 6.17 45.02 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.620819 ACAGAGGTCTTGTCGCAGAAT 59.379 47.619 0.00 0.00 39.69 2.40
1 2 1.040646 ACAGAGGTCTTGTCGCAGAA 58.959 50.000 0.00 0.00 39.69 3.02
2 3 1.040646 AACAGAGGTCTTGTCGCAGA 58.959 50.000 0.00 0.00 0.00 4.26
4 5 0.880278 GCAACAGAGGTCTTGTCGCA 60.880 55.000 0.00 0.00 0.00 5.10
5 6 0.880278 TGCAACAGAGGTCTTGTCGC 60.880 55.000 0.00 0.00 0.00 5.19
6 7 1.581934 TTGCAACAGAGGTCTTGTCG 58.418 50.000 0.00 0.00 0.00 4.35
7 8 3.206150 TCTTTGCAACAGAGGTCTTGTC 58.794 45.455 0.00 0.00 0.00 3.18
8 9 3.281727 TCTTTGCAACAGAGGTCTTGT 57.718 42.857 0.00 0.00 0.00 3.16
9 10 4.637483 TTTCTTTGCAACAGAGGTCTTG 57.363 40.909 0.00 0.00 0.00 3.02
10 11 5.659440 TTTTTCTTTGCAACAGAGGTCTT 57.341 34.783 0.00 0.00 0.00 3.01
31 32 5.523552 GCAACAAAGGTCTTGTAGCATTTTT 59.476 36.000 0.00 0.00 31.50 1.94
32 33 5.049828 GCAACAAAGGTCTTGTAGCATTTT 58.950 37.500 0.00 0.00 31.50 1.82
33 34 4.099266 TGCAACAAAGGTCTTGTAGCATTT 59.901 37.500 0.00 0.00 31.50 2.32
34 35 3.636300 TGCAACAAAGGTCTTGTAGCATT 59.364 39.130 0.00 0.00 31.50 3.56
35 36 3.221771 TGCAACAAAGGTCTTGTAGCAT 58.778 40.909 0.00 0.00 31.50 3.79
36 37 2.649190 TGCAACAAAGGTCTTGTAGCA 58.351 42.857 0.00 0.00 31.50 3.49
37 38 3.708563 TTGCAACAAAGGTCTTGTAGC 57.291 42.857 0.00 0.00 31.50 3.58
57 58 7.121759 ACAGCATATGTCTAGTTGCAGATTTTT 59.878 33.333 4.29 0.00 37.75 1.94
58 59 6.600822 ACAGCATATGTCTAGTTGCAGATTTT 59.399 34.615 4.29 0.00 37.75 1.82
59 60 6.118170 ACAGCATATGTCTAGTTGCAGATTT 58.882 36.000 4.29 0.00 37.75 2.17
60 61 5.678583 ACAGCATATGTCTAGTTGCAGATT 58.321 37.500 4.29 0.00 37.75 2.40
61 62 5.287674 ACAGCATATGTCTAGTTGCAGAT 57.712 39.130 4.29 0.00 37.75 2.90
62 63 4.743057 ACAGCATATGTCTAGTTGCAGA 57.257 40.909 4.29 0.00 37.75 4.26
63 64 6.908870 TTTACAGCATATGTCTAGTTGCAG 57.091 37.500 4.29 0.00 42.70 4.41
64 65 6.878923 ACTTTTACAGCATATGTCTAGTTGCA 59.121 34.615 4.29 0.00 42.70 4.08
65 66 7.308782 ACTTTTACAGCATATGTCTAGTTGC 57.691 36.000 4.29 0.00 42.70 4.17
66 67 9.760660 GAAACTTTTACAGCATATGTCTAGTTG 57.239 33.333 4.29 0.00 42.70 3.16
67 68 9.726438 AGAAACTTTTACAGCATATGTCTAGTT 57.274 29.630 4.29 5.73 42.70 2.24
71 72 9.502091 TTGTAGAAACTTTTACAGCATATGTCT 57.498 29.630 4.29 0.00 42.70 3.41
78 79 8.726988 GGTGATATTGTAGAAACTTTTACAGCA 58.273 33.333 0.00 0.00 31.95 4.41
79 80 8.182227 GGGTGATATTGTAGAAACTTTTACAGC 58.818 37.037 0.00 0.00 31.95 4.40
80 81 9.226606 TGGGTGATATTGTAGAAACTTTTACAG 57.773 33.333 0.00 0.00 31.95 2.74
81 82 9.747898 ATGGGTGATATTGTAGAAACTTTTACA 57.252 29.630 0.00 0.00 0.00 2.41
83 84 9.747898 ACATGGGTGATATTGTAGAAACTTTTA 57.252 29.630 0.00 0.00 0.00 1.52
84 85 8.650143 ACATGGGTGATATTGTAGAAACTTTT 57.350 30.769 0.00 0.00 0.00 2.27
85 86 8.522830 CAACATGGGTGATATTGTAGAAACTTT 58.477 33.333 0.00 0.00 0.00 2.66
86 87 7.362920 GCAACATGGGTGATATTGTAGAAACTT 60.363 37.037 0.00 0.00 0.00 2.66
87 88 6.095440 GCAACATGGGTGATATTGTAGAAACT 59.905 38.462 0.00 0.00 0.00 2.66
88 89 6.127758 TGCAACATGGGTGATATTGTAGAAAC 60.128 38.462 0.00 0.00 0.00 2.78
89 90 5.948758 TGCAACATGGGTGATATTGTAGAAA 59.051 36.000 0.00 0.00 0.00 2.52
90 91 5.504853 TGCAACATGGGTGATATTGTAGAA 58.495 37.500 0.00 0.00 0.00 2.10
91 92 5.109500 TGCAACATGGGTGATATTGTAGA 57.891 39.130 0.00 0.00 0.00 2.59
92 93 5.833406 TTGCAACATGGGTGATATTGTAG 57.167 39.130 0.00 0.00 0.00 2.74
93 94 6.210385 ACTTTTGCAACATGGGTGATATTGTA 59.790 34.615 0.00 0.00 0.00 2.41
94 95 5.011943 ACTTTTGCAACATGGGTGATATTGT 59.988 36.000 0.00 0.00 0.00 2.71
95 96 5.481105 ACTTTTGCAACATGGGTGATATTG 58.519 37.500 0.00 0.00 0.00 1.90
96 97 5.337491 GGACTTTTGCAACATGGGTGATATT 60.337 40.000 0.00 0.00 0.00 1.28
97 98 4.160252 GGACTTTTGCAACATGGGTGATAT 59.840 41.667 0.00 0.00 0.00 1.63
98 99 3.509575 GGACTTTTGCAACATGGGTGATA 59.490 43.478 0.00 0.00 0.00 2.15
99 100 2.299867 GGACTTTTGCAACATGGGTGAT 59.700 45.455 0.00 0.00 0.00 3.06
100 101 1.686052 GGACTTTTGCAACATGGGTGA 59.314 47.619 0.00 0.00 0.00 4.02
101 102 1.688197 AGGACTTTTGCAACATGGGTG 59.312 47.619 0.00 0.00 0.00 4.61
102 103 2.086610 AGGACTTTTGCAACATGGGT 57.913 45.000 0.00 0.00 0.00 4.51
103 104 2.289010 GGAAGGACTTTTGCAACATGGG 60.289 50.000 0.00 0.00 0.00 4.00
104 105 2.607771 CGGAAGGACTTTTGCAACATGG 60.608 50.000 0.00 0.00 0.00 3.66
105 106 2.664916 CGGAAGGACTTTTGCAACATG 58.335 47.619 0.00 0.00 0.00 3.21
106 107 1.000274 GCGGAAGGACTTTTGCAACAT 60.000 47.619 0.00 0.00 0.00 2.71
107 108 0.383949 GCGGAAGGACTTTTGCAACA 59.616 50.000 0.00 0.00 0.00 3.33
108 109 0.383949 TGCGGAAGGACTTTTGCAAC 59.616 50.000 0.00 0.00 32.64 4.17
109 110 1.107114 TTGCGGAAGGACTTTTGCAA 58.893 45.000 15.99 15.99 39.17 4.08
110 111 0.383949 GTTGCGGAAGGACTTTTGCA 59.616 50.000 7.71 7.71 33.35 4.08
111 112 0.383949 TGTTGCGGAAGGACTTTTGC 59.616 50.000 0.00 3.45 0.00 3.68
112 113 2.293122 TGATGTTGCGGAAGGACTTTTG 59.707 45.455 0.00 0.00 0.00 2.44
113 114 2.582052 TGATGTTGCGGAAGGACTTTT 58.418 42.857 0.00 0.00 0.00 2.27
114 115 2.270352 TGATGTTGCGGAAGGACTTT 57.730 45.000 0.00 0.00 0.00 2.66
115 116 2.026822 AGATGATGTTGCGGAAGGACTT 60.027 45.455 0.00 0.00 0.00 3.01
116 117 1.556911 AGATGATGTTGCGGAAGGACT 59.443 47.619 0.00 0.00 0.00 3.85
117 118 2.029838 AGATGATGTTGCGGAAGGAC 57.970 50.000 0.00 0.00 0.00 3.85
118 119 3.732212 CATAGATGATGTTGCGGAAGGA 58.268 45.455 0.00 0.00 0.00 3.36
129 130 4.524714 ACGGAGGGAGTAACATAGATGATG 59.475 45.833 0.00 0.00 41.79 3.07
130 131 4.742012 ACGGAGGGAGTAACATAGATGAT 58.258 43.478 0.00 0.00 0.00 2.45
131 132 4.180377 ACGGAGGGAGTAACATAGATGA 57.820 45.455 0.00 0.00 0.00 2.92
132 133 4.939052 AACGGAGGGAGTAACATAGATG 57.061 45.455 0.00 0.00 0.00 2.90
133 134 7.613551 AAATAACGGAGGGAGTAACATAGAT 57.386 36.000 0.00 0.00 0.00 1.98
134 135 7.427989 AAAATAACGGAGGGAGTAACATAGA 57.572 36.000 0.00 0.00 0.00 1.98
135 136 8.419442 ACTAAAATAACGGAGGGAGTAACATAG 58.581 37.037 0.00 0.00 0.00 2.23
136 137 8.310122 ACTAAAATAACGGAGGGAGTAACATA 57.690 34.615 0.00 0.00 0.00 2.29
137 138 7.125356 AGACTAAAATAACGGAGGGAGTAACAT 59.875 37.037 0.00 0.00 0.00 2.71
138 139 6.438425 AGACTAAAATAACGGAGGGAGTAACA 59.562 38.462 0.00 0.00 0.00 2.41
139 140 6.755607 CAGACTAAAATAACGGAGGGAGTAAC 59.244 42.308 0.00 0.00 0.00 2.50
140 141 6.628844 GCAGACTAAAATAACGGAGGGAGTAA 60.629 42.308 0.00 0.00 0.00 2.24
141 142 5.163478 GCAGACTAAAATAACGGAGGGAGTA 60.163 44.000 0.00 0.00 0.00 2.59
142 143 4.382793 GCAGACTAAAATAACGGAGGGAGT 60.383 45.833 0.00 0.00 0.00 3.85
143 144 4.120589 GCAGACTAAAATAACGGAGGGAG 58.879 47.826 0.00 0.00 0.00 4.30
144 145 3.516300 TGCAGACTAAAATAACGGAGGGA 59.484 43.478 0.00 0.00 0.00 4.20
145 146 3.869065 TGCAGACTAAAATAACGGAGGG 58.131 45.455 0.00 0.00 0.00 4.30
146 147 8.827177 TTATATGCAGACTAAAATAACGGAGG 57.173 34.615 0.00 0.00 0.00 4.30
147 148 8.926710 CCTTATATGCAGACTAAAATAACGGAG 58.073 37.037 0.00 0.00 0.00 4.63
148 149 8.426489 ACCTTATATGCAGACTAAAATAACGGA 58.574 33.333 0.00 0.00 0.00 4.69
149 150 8.603242 ACCTTATATGCAGACTAAAATAACGG 57.397 34.615 0.00 0.00 0.00 4.44
153 154 9.914834 ACCAAACCTTATATGCAGACTAAAATA 57.085 29.630 0.00 0.00 0.00 1.40
154 155 8.823220 ACCAAACCTTATATGCAGACTAAAAT 57.177 30.769 0.00 0.00 0.00 1.82
155 156 7.885922 TGACCAAACCTTATATGCAGACTAAAA 59.114 33.333 0.00 0.00 0.00 1.52
156 157 7.398829 TGACCAAACCTTATATGCAGACTAAA 58.601 34.615 0.00 0.00 0.00 1.85
157 158 6.953101 TGACCAAACCTTATATGCAGACTAA 58.047 36.000 0.00 0.00 0.00 2.24
158 159 6.553953 TGACCAAACCTTATATGCAGACTA 57.446 37.500 0.00 0.00 0.00 2.59
159 160 5.435686 TGACCAAACCTTATATGCAGACT 57.564 39.130 0.00 0.00 0.00 3.24
160 161 6.151144 ACTTTGACCAAACCTTATATGCAGAC 59.849 38.462 0.00 0.00 0.00 3.51
161 162 6.245408 ACTTTGACCAAACCTTATATGCAGA 58.755 36.000 0.00 0.00 0.00 4.26
162 163 6.150976 TGACTTTGACCAAACCTTATATGCAG 59.849 38.462 0.00 0.00 0.00 4.41
163 164 6.007076 TGACTTTGACCAAACCTTATATGCA 58.993 36.000 0.00 0.00 0.00 3.96
164 165 6.509418 TGACTTTGACCAAACCTTATATGC 57.491 37.500 0.00 0.00 0.00 3.14
165 166 7.029563 GCTTGACTTTGACCAAACCTTATATG 58.970 38.462 0.00 0.00 0.00 1.78
166 167 6.948309 AGCTTGACTTTGACCAAACCTTATAT 59.052 34.615 0.00 0.00 0.00 0.86
167 168 6.303839 AGCTTGACTTTGACCAAACCTTATA 58.696 36.000 0.00 0.00 0.00 0.98
168 169 5.140454 AGCTTGACTTTGACCAAACCTTAT 58.860 37.500 0.00 0.00 0.00 1.73
169 170 4.532834 AGCTTGACTTTGACCAAACCTTA 58.467 39.130 0.00 0.00 0.00 2.69
170 171 3.365472 AGCTTGACTTTGACCAAACCTT 58.635 40.909 0.00 0.00 0.00 3.50
171 172 3.018423 AGCTTGACTTTGACCAAACCT 57.982 42.857 0.00 0.00 0.00 3.50
172 173 3.801114 AAGCTTGACTTTGACCAAACC 57.199 42.857 0.00 0.00 33.71 3.27
182 183 6.116126 AGTCAAACTCTACAAAGCTTGACTT 58.884 36.000 13.94 3.16 41.70 3.01
183 184 5.675538 AGTCAAACTCTACAAAGCTTGACT 58.324 37.500 13.94 13.94 0.00 3.41
184 185 5.993106 AGTCAAACTCTACAAAGCTTGAC 57.007 39.130 0.00 10.63 0.00 3.18
185 186 7.272978 AGTTAGTCAAACTCTACAAAGCTTGA 58.727 34.615 0.00 0.00 45.64 3.02
186 187 7.484035 AGTTAGTCAAACTCTACAAAGCTTG 57.516 36.000 0.00 0.00 45.64 4.01
240 241 9.304335 TGGTGCATCTGATAATATTGATTTCAT 57.696 29.630 0.00 0.00 0.00 2.57
241 242 8.694581 TGGTGCATCTGATAATATTGATTTCA 57.305 30.769 0.00 0.00 0.00 2.69
242 243 9.569167 CATGGTGCATCTGATAATATTGATTTC 57.431 33.333 0.00 0.00 0.00 2.17
243 244 9.304335 TCATGGTGCATCTGATAATATTGATTT 57.696 29.630 0.00 0.00 0.00 2.17
244 245 8.873186 TCATGGTGCATCTGATAATATTGATT 57.127 30.769 0.00 0.00 0.00 2.57
246 247 9.387257 GTATCATGGTGCATCTGATAATATTGA 57.613 33.333 16.02 0.86 34.58 2.57
247 248 8.333186 CGTATCATGGTGCATCTGATAATATTG 58.667 37.037 16.02 5.69 34.58 1.90
248 249 8.043113 ACGTATCATGGTGCATCTGATAATATT 58.957 33.333 16.02 0.00 34.58 1.28
249 250 7.559486 ACGTATCATGGTGCATCTGATAATAT 58.441 34.615 16.02 6.61 34.58 1.28
250 251 6.935167 ACGTATCATGGTGCATCTGATAATA 58.065 36.000 16.02 0.69 34.58 0.98
251 252 5.798132 ACGTATCATGGTGCATCTGATAAT 58.202 37.500 16.02 8.56 34.58 1.28
252 253 5.213891 ACGTATCATGGTGCATCTGATAA 57.786 39.130 16.02 3.99 34.58 1.75
253 254 4.871933 ACGTATCATGGTGCATCTGATA 57.128 40.909 12.38 12.38 32.20 2.15
254 255 3.758755 ACGTATCATGGTGCATCTGAT 57.241 42.857 13.91 13.91 34.22 2.90
255 256 3.541996 AACGTATCATGGTGCATCTGA 57.458 42.857 0.00 0.00 0.00 3.27
256 257 4.621068 AAAACGTATCATGGTGCATCTG 57.379 40.909 0.00 0.00 0.00 2.90
343 344 9.442047 TCAAACTACACAAATTTTGACCAAATT 57.558 25.926 15.81 2.10 45.50 1.82
344 345 8.878769 GTCAAACTACACAAATTTTGACCAAAT 58.121 29.630 15.81 0.00 46.37 2.32
345 346 8.245701 GTCAAACTACACAAATTTTGACCAAA 57.754 30.769 15.81 0.00 46.37 3.28
346 347 7.820044 GTCAAACTACACAAATTTTGACCAA 57.180 32.000 15.81 0.00 46.37 3.67
350 351 9.698309 TTCAAAGTCAAACTACACAAATTTTGA 57.302 25.926 15.81 0.00 35.98 2.69
351 352 9.739786 GTTCAAAGTCAAACTACACAAATTTTG 57.260 29.630 7.59 7.59 0.00 2.44
352 353 9.482627 TGTTCAAAGTCAAACTACACAAATTTT 57.517 25.926 0.00 0.00 0.00 1.82
353 354 9.482627 TTGTTCAAAGTCAAACTACACAAATTT 57.517 25.926 0.00 0.00 0.00 1.82
354 355 9.482627 TTTGTTCAAAGTCAAACTACACAAATT 57.517 25.926 0.00 0.00 0.00 1.82
355 356 9.651913 ATTTGTTCAAAGTCAAACTACACAAAT 57.348 25.926 4.37 0.00 36.58 2.32
356 357 9.134734 GATTTGTTCAAAGTCAAACTACACAAA 57.865 29.630 4.37 0.00 36.58 2.83
357 358 8.519526 AGATTTGTTCAAAGTCAAACTACACAA 58.480 29.630 4.37 0.00 36.58 3.33
358 359 8.050778 AGATTTGTTCAAAGTCAAACTACACA 57.949 30.769 4.37 0.00 36.58 3.72
359 360 8.911247 AAGATTTGTTCAAAGTCAAACTACAC 57.089 30.769 4.37 0.00 36.58 2.90
365 366 9.340695 CGCATATAAGATTTGTTCAAAGTCAAA 57.659 29.630 4.37 0.00 37.82 2.69
366 367 7.967854 CCGCATATAAGATTTGTTCAAAGTCAA 59.032 33.333 4.37 0.00 0.00 3.18
367 368 7.335673 TCCGCATATAAGATTTGTTCAAAGTCA 59.664 33.333 4.37 0.00 0.00 3.41
368 369 7.693952 TCCGCATATAAGATTTGTTCAAAGTC 58.306 34.615 4.37 3.06 0.00 3.01
369 370 7.336931 ACTCCGCATATAAGATTTGTTCAAAGT 59.663 33.333 4.37 0.00 0.00 2.66
370 371 7.697691 ACTCCGCATATAAGATTTGTTCAAAG 58.302 34.615 4.37 0.00 0.00 2.77
371 372 7.624360 ACTCCGCATATAAGATTTGTTCAAA 57.376 32.000 0.44 0.44 0.00 2.69
372 373 8.725405 TTACTCCGCATATAAGATTTGTTCAA 57.275 30.769 0.00 0.00 0.00 2.69
373 374 8.725405 TTTACTCCGCATATAAGATTTGTTCA 57.275 30.769 0.00 0.00 0.00 3.18
374 375 9.997482 TTTTTACTCCGCATATAAGATTTGTTC 57.003 29.630 0.00 0.00 0.00 3.18
399 400 6.544564 TCATCTTTTGTACTCCCTTCGTTTTT 59.455 34.615 0.00 0.00 0.00 1.94
400 401 6.059484 TCATCTTTTGTACTCCCTTCGTTTT 58.941 36.000 0.00 0.00 0.00 2.43
401 402 5.617252 TCATCTTTTGTACTCCCTTCGTTT 58.383 37.500 0.00 0.00 0.00 3.60
402 403 5.223449 TCATCTTTTGTACTCCCTTCGTT 57.777 39.130 0.00 0.00 0.00 3.85
403 404 4.884668 TCATCTTTTGTACTCCCTTCGT 57.115 40.909 0.00 0.00 0.00 3.85
404 405 5.479306 TCTTCATCTTTTGTACTCCCTTCG 58.521 41.667 0.00 0.00 0.00 3.79
405 406 9.050601 CATATCTTCATCTTTTGTACTCCCTTC 57.949 37.037 0.00 0.00 0.00 3.46
406 407 8.552296 ACATATCTTCATCTTTTGTACTCCCTT 58.448 33.333 0.00 0.00 0.00 3.95
407 408 8.095452 ACATATCTTCATCTTTTGTACTCCCT 57.905 34.615 0.00 0.00 0.00 4.20
408 409 8.616076 CAACATATCTTCATCTTTTGTACTCCC 58.384 37.037 0.00 0.00 0.00 4.30
409 410 8.125448 GCAACATATCTTCATCTTTTGTACTCC 58.875 37.037 0.00 0.00 0.00 3.85
410 411 8.668353 TGCAACATATCTTCATCTTTTGTACTC 58.332 33.333 0.00 0.00 0.00 2.59
411 412 8.565896 TGCAACATATCTTCATCTTTTGTACT 57.434 30.769 0.00 0.00 0.00 2.73
412 413 9.624697 TTTGCAACATATCTTCATCTTTTGTAC 57.375 29.630 0.00 0.00 0.00 2.90
414 415 9.545105 TTTTTGCAACATATCTTCATCTTTTGT 57.455 25.926 0.00 0.00 0.00 2.83
481 482 4.162651 AGGGGATCTTGTTGCAGATTTTT 58.837 39.130 0.00 0.00 33.36 1.94
482 483 3.782992 AGGGGATCTTGTTGCAGATTTT 58.217 40.909 0.00 0.00 33.36 1.82
483 484 3.463048 AGGGGATCTTGTTGCAGATTT 57.537 42.857 0.00 0.00 33.36 2.17
484 485 3.463048 AAGGGGATCTTGTTGCAGATT 57.537 42.857 0.00 0.00 33.36 2.40
485 486 3.094572 CAAAGGGGATCTTGTTGCAGAT 58.905 45.455 0.00 0.00 36.12 2.90
486 487 2.517959 CAAAGGGGATCTTGTTGCAGA 58.482 47.619 0.00 0.00 35.55 4.26
487 488 1.067354 GCAAAGGGGATCTTGTTGCAG 60.067 52.381 14.70 0.00 38.46 4.41
488 489 0.968405 GCAAAGGGGATCTTGTTGCA 59.032 50.000 14.70 0.00 38.46 4.08
489 490 0.968405 TGCAAAGGGGATCTTGTTGC 59.032 50.000 13.46 13.46 38.83 4.17
490 491 3.181467 TGTTTGCAAAGGGGATCTTGTTG 60.181 43.478 13.26 0.00 35.55 3.33
491 492 3.037549 TGTTTGCAAAGGGGATCTTGTT 58.962 40.909 13.26 0.00 35.55 2.83
492 493 2.676748 TGTTTGCAAAGGGGATCTTGT 58.323 42.857 13.26 0.00 35.55 3.16
493 494 3.749665 TTGTTTGCAAAGGGGATCTTG 57.250 42.857 13.26 0.00 35.55 3.02
494 495 4.769345 TTTTGTTTGCAAAGGGGATCTT 57.231 36.364 13.26 0.00 44.32 2.40
495 496 4.594491 AGATTTTGTTTGCAAAGGGGATCT 59.406 37.500 13.26 15.30 44.32 2.75
496 497 4.692155 CAGATTTTGTTTGCAAAGGGGATC 59.308 41.667 13.26 13.44 44.32 3.36
497 498 4.644498 CAGATTTTGTTTGCAAAGGGGAT 58.356 39.130 13.26 4.99 44.32 3.85
498 499 3.743899 GCAGATTTTGTTTGCAAAGGGGA 60.744 43.478 13.26 0.00 44.32 4.81
499 500 2.549329 GCAGATTTTGTTTGCAAAGGGG 59.451 45.455 13.26 0.00 44.32 4.79
500 501 3.204526 TGCAGATTTTGTTTGCAAAGGG 58.795 40.909 13.26 0.00 44.13 3.95
505 506 3.593096 TGTGTTGCAGATTTTGTTTGCA 58.407 36.364 0.00 0.00 45.28 4.08
506 507 4.520078 CATGTGTTGCAGATTTTGTTTGC 58.480 39.130 0.00 0.00 38.30 3.68
524 525 1.608590 CCTTTCTGAAACACGGCATGT 59.391 47.619 0.00 0.00 46.42 3.21
525 526 1.608590 ACCTTTCTGAAACACGGCATG 59.391 47.619 0.00 0.00 0.00 4.06
526 527 1.981256 ACCTTTCTGAAACACGGCAT 58.019 45.000 0.00 0.00 0.00 4.40
527 528 2.623878 TACCTTTCTGAAACACGGCA 57.376 45.000 0.00 0.00 0.00 5.69
528 529 3.974871 TTTACCTTTCTGAAACACGGC 57.025 42.857 0.00 0.00 0.00 5.68
529 530 6.348213 CCACTATTTACCTTTCTGAAACACGG 60.348 42.308 0.00 2.23 0.00 4.94
530 531 6.425721 TCCACTATTTACCTTTCTGAAACACG 59.574 38.462 0.00 0.00 0.00 4.49
531 532 7.739498 TCCACTATTTACCTTTCTGAAACAC 57.261 36.000 0.00 0.00 0.00 3.32
532 533 8.215050 TCTTCCACTATTTACCTTTCTGAAACA 58.785 33.333 0.00 0.00 0.00 2.83
533 534 8.617290 TCTTCCACTATTTACCTTTCTGAAAC 57.383 34.615 0.00 0.00 0.00 2.78
534 535 9.231297 CATCTTCCACTATTTACCTTTCTGAAA 57.769 33.333 2.44 2.44 0.00 2.69
535 536 7.829211 CCATCTTCCACTATTTACCTTTCTGAA 59.171 37.037 0.00 0.00 0.00 3.02
536 537 7.338710 CCATCTTCCACTATTTACCTTTCTGA 58.661 38.462 0.00 0.00 0.00 3.27
537 538 6.543831 CCCATCTTCCACTATTTACCTTTCTG 59.456 42.308 0.00 0.00 0.00 3.02
538 539 6.217693 ACCCATCTTCCACTATTTACCTTTCT 59.782 38.462 0.00 0.00 0.00 2.52
539 540 6.424032 ACCCATCTTCCACTATTTACCTTTC 58.576 40.000 0.00 0.00 0.00 2.62
540 541 6.402981 ACCCATCTTCCACTATTTACCTTT 57.597 37.500 0.00 0.00 0.00 3.11
541 542 6.906901 TCTACCCATCTTCCACTATTTACCTT 59.093 38.462 0.00 0.00 0.00 3.50
542 543 6.449956 TCTACCCATCTTCCACTATTTACCT 58.550 40.000 0.00 0.00 0.00 3.08
543 544 6.742559 TCTACCCATCTTCCACTATTTACC 57.257 41.667 0.00 0.00 0.00 2.85
544 545 7.091443 CGATCTACCCATCTTCCACTATTTAC 58.909 42.308 0.00 0.00 0.00 2.01
545 546 6.210784 CCGATCTACCCATCTTCCACTATTTA 59.789 42.308 0.00 0.00 0.00 1.40
546 547 5.012148 CCGATCTACCCATCTTCCACTATTT 59.988 44.000 0.00 0.00 0.00 1.40
547 548 4.528596 CCGATCTACCCATCTTCCACTATT 59.471 45.833 0.00 0.00 0.00 1.73
548 549 4.090090 CCGATCTACCCATCTTCCACTAT 58.910 47.826 0.00 0.00 0.00 2.12
549 550 3.139584 TCCGATCTACCCATCTTCCACTA 59.860 47.826 0.00 0.00 0.00 2.74
550 551 2.091278 TCCGATCTACCCATCTTCCACT 60.091 50.000 0.00 0.00 0.00 4.00
551 552 2.317040 TCCGATCTACCCATCTTCCAC 58.683 52.381 0.00 0.00 0.00 4.02
552 553 2.767644 TCCGATCTACCCATCTTCCA 57.232 50.000 0.00 0.00 0.00 3.53
553 554 2.234908 CCATCCGATCTACCCATCTTCC 59.765 54.545 0.00 0.00 0.00 3.46
554 555 3.165875 TCCATCCGATCTACCCATCTTC 58.834 50.000 0.00 0.00 0.00 2.87
555 556 3.260269 TCCATCCGATCTACCCATCTT 57.740 47.619 0.00 0.00 0.00 2.40
556 557 3.481559 ATCCATCCGATCTACCCATCT 57.518 47.619 0.00 0.00 0.00 2.90
557 558 4.282195 GGATATCCATCCGATCTACCCATC 59.718 50.000 17.34 0.00 41.50 3.51
558 559 4.227197 GGATATCCATCCGATCTACCCAT 58.773 47.826 17.34 0.00 41.50 4.00
559 560 3.643237 GGATATCCATCCGATCTACCCA 58.357 50.000 17.34 0.00 41.50 4.51
569 570 3.793126 ATGGACGCGAGGATATCCATCC 61.793 54.545 23.81 19.33 46.83 3.51
570 571 0.888619 TGGACGCGAGGATATCCATC 59.111 55.000 23.81 15.79 36.30 3.51
571 572 1.561643 ATGGACGCGAGGATATCCAT 58.438 50.000 23.81 17.27 44.89 3.41
572 573 0.888619 GATGGACGCGAGGATATCCA 59.111 55.000 23.81 15.47 45.12 3.41
573 574 0.173708 GGATGGACGCGAGGATATCC 59.826 60.000 15.93 14.41 33.08 2.59
574 575 0.888619 TGGATGGACGCGAGGATATC 59.111 55.000 15.93 8.95 0.00 1.63
575 576 1.000955 GTTGGATGGACGCGAGGATAT 59.999 52.381 15.93 0.00 0.00 1.63
576 577 0.387929 GTTGGATGGACGCGAGGATA 59.612 55.000 15.93 0.00 0.00 2.59
577 578 1.144057 GTTGGATGGACGCGAGGAT 59.856 57.895 15.93 0.00 0.00 3.24
578 579 2.225791 CTGTTGGATGGACGCGAGGA 62.226 60.000 15.93 0.00 0.00 3.71
579 580 1.811266 CTGTTGGATGGACGCGAGG 60.811 63.158 15.93 0.00 0.00 4.63
580 581 2.456119 GCTGTTGGATGGACGCGAG 61.456 63.158 15.93 0.00 0.00 5.03
581 582 2.434185 GCTGTTGGATGGACGCGA 60.434 61.111 15.93 0.00 0.00 5.87
582 583 3.499737 GGCTGTTGGATGGACGCG 61.500 66.667 3.53 3.53 0.00 6.01
583 584 2.359850 TGGCTGTTGGATGGACGC 60.360 61.111 0.00 0.00 0.00 5.19
584 585 2.401766 GCTGGCTGTTGGATGGACG 61.402 63.158 0.00 0.00 0.00 4.79
585 586 2.401766 CGCTGGCTGTTGGATGGAC 61.402 63.158 0.00 0.00 0.00 4.02
586 587 2.046023 CGCTGGCTGTTGGATGGA 60.046 61.111 0.00 0.00 0.00 3.41
587 588 2.046023 TCGCTGGCTGTTGGATGG 60.046 61.111 0.00 0.00 0.00 3.51
588 589 2.110967 CCTCGCTGGCTGTTGGATG 61.111 63.158 0.00 0.00 0.00 3.51
589 590 2.270205 CCTCGCTGGCTGTTGGAT 59.730 61.111 0.00 0.00 0.00 3.41
599 600 3.865929 AATATCCGCCGCCTCGCTG 62.866 63.158 0.00 0.00 0.00 5.18
600 601 2.660258 AAAATATCCGCCGCCTCGCT 62.660 55.000 0.00 0.00 0.00 4.93
601 602 2.171489 GAAAATATCCGCCGCCTCGC 62.171 60.000 0.00 0.00 0.00 5.03
602 603 0.600255 AGAAAATATCCGCCGCCTCG 60.600 55.000 0.00 0.00 0.00 4.63
603 604 2.288886 ACTAGAAAATATCCGCCGCCTC 60.289 50.000 0.00 0.00 0.00 4.70
604 605 1.692519 ACTAGAAAATATCCGCCGCCT 59.307 47.619 0.00 0.00 0.00 5.52
605 606 2.165319 ACTAGAAAATATCCGCCGCC 57.835 50.000 0.00 0.00 0.00 6.13
606 607 4.329256 GGATAACTAGAAAATATCCGCCGC 59.671 45.833 0.00 0.00 36.70 6.53
611 612 4.868734 CCGGCGGATAACTAGAAAATATCC 59.131 45.833 24.41 7.52 41.02 2.59
612 613 4.329256 GCCGGCGGATAACTAGAAAATATC 59.671 45.833 33.44 0.51 0.00 1.63
613 614 4.251268 GCCGGCGGATAACTAGAAAATAT 58.749 43.478 33.44 0.00 0.00 1.28
614 615 3.555586 GGCCGGCGGATAACTAGAAAATA 60.556 47.826 33.44 0.00 0.00 1.40
615 616 2.490991 GCCGGCGGATAACTAGAAAAT 58.509 47.619 33.44 0.00 0.00 1.82
616 617 1.473788 GGCCGGCGGATAACTAGAAAA 60.474 52.381 33.44 0.00 0.00 2.29
617 618 0.105408 GGCCGGCGGATAACTAGAAA 59.895 55.000 33.44 0.00 0.00 2.52
618 619 1.744014 GGCCGGCGGATAACTAGAA 59.256 57.895 33.44 0.00 0.00 2.10
619 620 2.558286 CGGCCGGCGGATAACTAGA 61.558 63.158 33.44 0.00 0.00 2.43
620 621 2.049433 CGGCCGGCGGATAACTAG 60.049 66.667 33.44 7.70 0.00 2.57
621 622 2.519063 TCGGCCGGCGGATAACTA 60.519 61.111 33.44 9.64 0.00 2.24
622 623 4.217159 GTCGGCCGGCGGATAACT 62.217 66.667 35.32 0.00 0.00 2.24
623 624 3.728279 AAGTCGGCCGGCGGATAAC 62.728 63.158 35.32 24.36 0.00 1.89
624 625 2.524951 AAAAGTCGGCCGGCGGATAA 62.525 55.000 35.32 14.55 0.00 1.75
625 626 2.524951 AAAAAGTCGGCCGGCGGATA 62.525 55.000 35.32 15.30 0.00 2.59
626 627 3.912745 AAAAAGTCGGCCGGCGGAT 62.913 57.895 35.32 20.64 0.00 4.18
627 628 4.629523 AAAAAGTCGGCCGGCGGA 62.630 61.111 33.44 30.62 0.00 5.54
665 666 5.808042 GAGCACATGATTTTCTAAGCTCA 57.192 39.130 0.00 0.00 44.77 4.26
699 701 1.978617 CTCGGCCCAAAATGTGCCT 60.979 57.895 0.00 0.00 43.12 4.75
751 753 1.845809 GCACTCTGCTCCGTGTTTGG 61.846 60.000 0.00 0.00 40.96 3.28
752 754 1.571460 GCACTCTGCTCCGTGTTTG 59.429 57.895 0.00 0.00 40.96 2.93
753 755 1.956170 CGCACTCTGCTCCGTGTTT 60.956 57.895 0.00 0.00 42.25 2.83
940 961 0.826062 TGATGAGATGCGCTTCCTCA 59.174 50.000 22.10 22.10 40.68 3.86
1086 1159 2.024871 CGCGACAGGATCTCCGAC 59.975 66.667 0.00 0.00 42.08 4.79
1382 10770 1.881973 TCATGTCAAACTTCCAGCAGC 59.118 47.619 0.00 0.00 0.00 5.25
1629 11021 2.922503 TTCTGGGAGCTCCACGCA 60.923 61.111 33.29 20.83 41.46 5.24
1774 11177 0.423544 ATCCTCCTCCAGGTTTCCCT 59.576 55.000 0.00 0.00 43.95 4.20
1930 11333 2.566833 ATGCTGGCAGTACACTTCAA 57.433 45.000 17.16 0.00 0.00 2.69
2264 11670 6.920569 ATCAACACCTAAAACCATCGATAC 57.079 37.500 0.00 0.00 0.00 2.24
2278 11684 2.578021 AGCACCTATCCAATCAACACCT 59.422 45.455 0.00 0.00 0.00 4.00
2334 11741 3.064545 GTGATCCATAACAAGCTGCAGAC 59.935 47.826 20.43 9.11 0.00 3.51
2375 11785 5.302568 ACTTTCAAATGCATCAGAACAGGAA 59.697 36.000 11.91 0.88 0.00 3.36
2452 11866 5.102953 TGATCCAAGATTCCAAGGTACTG 57.897 43.478 0.00 0.00 40.86 2.74
2519 11935 1.264020 GTTGACACAATGCGAGCAGAA 59.736 47.619 3.58 0.00 0.00 3.02
2551 11968 1.047801 TGTGTTCTCAGGCTAGCACA 58.952 50.000 18.24 8.18 34.95 4.57
2598 12017 8.006564 TGAGGGGAAAGATTGCAATTATATTCT 58.993 33.333 14.33 2.48 0.00 2.40
2600 12019 8.551682 TTGAGGGGAAAGATTGCAATTATATT 57.448 30.769 14.33 6.53 0.00 1.28
2601 12020 8.551682 TTTGAGGGGAAAGATTGCAATTATAT 57.448 30.769 14.33 0.45 0.00 0.86
2603 12022 6.872585 TTTGAGGGGAAAGATTGCAATTAT 57.127 33.333 14.33 2.65 0.00 1.28
2604 12023 6.678568 TTTTGAGGGGAAAGATTGCAATTA 57.321 33.333 14.33 0.00 0.00 1.40
2605 12024 5.565455 TTTTGAGGGGAAAGATTGCAATT 57.435 34.783 14.33 0.00 0.00 2.32
2606 12025 5.565455 TTTTTGAGGGGAAAGATTGCAAT 57.435 34.783 12.83 12.83 0.00 3.56
2631 12050 7.864379 CACTGAATCACTTGTGCTATTCTTTTT 59.136 33.333 12.93 0.00 31.16 1.94
2632 12051 7.229306 TCACTGAATCACTTGTGCTATTCTTTT 59.771 33.333 12.93 0.78 31.16 2.27
2633 12052 6.712095 TCACTGAATCACTTGTGCTATTCTTT 59.288 34.615 12.93 2.44 31.16 2.52
2634 12053 6.148480 GTCACTGAATCACTTGTGCTATTCTT 59.852 38.462 12.93 2.68 31.16 2.52
2683 12185 1.267806 CACTGAACCTGTGTGGCATTC 59.732 52.381 0.00 0.00 40.22 2.67
2755 12258 3.565902 GCAGAACTATAATGGCCTTGGAC 59.434 47.826 3.32 0.00 0.00 4.02
2866 12369 7.189693 TGTTATCGCTATTCAATGACAATCC 57.810 36.000 0.00 0.00 0.00 3.01
2868 12371 6.260714 TGCTGTTATCGCTATTCAATGACAAT 59.739 34.615 0.00 0.00 0.00 2.71
3017 12520 5.241949 GTCGACCTGAACCTCACATATAGAT 59.758 44.000 3.51 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.