AutoCloner

Multiple sequence alignment - TraesCS1D01G437300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G437300	chr1D	100.000	4506	0	0	1	4506	484559597	484555092	0.000000e+00	8322.0
1	TraesCS1D01G437300	chr1D	93.773	273	17	0	1	273	484734175	484733903	1.170000e-110	411.0
2	TraesCS1D01G437300	chr1A	95.540	2646	98	8	1063	3697	581873765	581871129	0.000000e+00	4215.0
3	TraesCS1D01G437300	chr1A	88.430	605	31	6	351	938	581874523	581873941	0.000000e+00	693.0
4	TraesCS1D01G437300	chr1A	90.640	406	30	2	3735	4135	581871129	581870727	2.390000e-147	532.0
5	TraesCS1D01G437300	chr1A	94.720	322	15	2	1	321	581874846	581874526	2.420000e-137	499.0
6	TraesCS1D01G437300	chr1A	96.528	288	5	4	4221	4506	581870695	581870411	5.280000e-129	472.0
7	TraesCS1D01G437300	chr1A	86.486	222	29	1	344	564	132411889	132412110	4.500000e-60	243.0
8	TraesCS1D01G437300	chr1A	97.917	48	1	0	986	1033	581873946	581873899	2.890000e-12	84.2
9	TraesCS1D01G437300	chr1B	92.509	2256	101	21	734	2965	674814156	674811945	0.000000e+00	3168.0
10	TraesCS1D01G437300	chr1B	93.222	841	25	3	2973	3810	674811977	674811166	0.000000e+00	1208.0
11	TraesCS1D01G437300	chr1B	91.405	733	49	10	1	729	674814921	674814199	0.000000e+00	992.0
12	TraesCS1D01G437300	chr1B	92.308	273	19	1	1	273	674879556	674879286	1.970000e-103	387.0
13	TraesCS1D01G437300	chr1B	90.975	277	19	2	1	273	675240368	675240642	7.120000e-98	368.0
14	TraesCS1D01G437300	chr1B	89.716	282	20	7	3946	4220	674811138	674810859	7.170000e-93	351.0
15	TraesCS1D01G437300	chr1B	86.853	251	14	7	4275	4506	674810778	674810528	3.460000e-66	263.0
16	TraesCS1D01G437300	chr1B	97.500	40	0	1	1140	1178	674815041	674815002	2.910000e-07	67.6
17	TraesCS1D01G437300	chr4B	86.321	212	27	2	343	553	187621624	187621414	3.510000e-56	230.0
18	TraesCS1D01G437300	chr4B	85.849	212	28	2	343	553	567184475	567184265	1.630000e-54	224.0
19	TraesCS1D01G437300	chr4B	97.727	88	2	0	3839	3926	308049728	308049641	7.810000e-33	152.0
20	TraesCS1D01G437300	chr4B	91.429	105	9	0	3823	3927	249778546	249778650	1.310000e-30	145.0
21	TraesCS1D01G437300	chr4A	86.449	214	23	5	343	553	693397467	693397257	3.510000e-56	230.0
22	TraesCS1D01G437300	chr4A	86.190	210	27	2	343	551	667312808	667313016	4.540000e-55	226.0
23	TraesCS1D01G437300	chr3A	86.321	212	27	2	343	553	53029555	53029345	3.510000e-56	230.0
24	TraesCS1D01G437300	chr3A	80.816	245	44	3	343	586	715424543	715424785	5.950000e-44	189.0
25	TraesCS1D01G437300	chr3A	94.000	100	6	0	3835	3934	533623342	533623243	7.810000e-33	152.0
26	TraesCS1D01G437300	chr2D	86.256	211	27	2	343	553	540636239	540636447	1.260000e-55	228.0
27	TraesCS1D01G437300	chr2D	84.305	223	32	3	344	564	529770913	529771134	9.820000e-52	215.0
28	TraesCS1D01G437300	chr2D	83.784	222	35	1	344	564	529854389	529854610	4.570000e-50	209.0
29	TraesCS1D01G437300	chr3B	82.278	237	39	3	343	577	765296589	765296354	7.640000e-48	202.0
30	TraesCS1D01G437300	chr3B	81.702	235	38	5	343	575	794367059	794367290	1.650000e-44	191.0
31	TraesCS1D01G437300	chr3B	94.845	97	4	1	3839	3934	380683850	380683946	2.810000e-32	150.0
32	TraesCS1D01G437300	chr3B	93.939	99	5	1	3841	3939	737755546	737755449	1.010000e-31	148.0
33	TraesCS1D01G437300	chr5A	82.609	230	35	5	351	578	142753937	142753711	9.890000e-47	198.0
34	TraesCS1D01G437300	chr5A	94.792	96	4	1	3832	3927	38014612	38014706	1.010000e-31	148.0
35	TraesCS1D01G437300	chr2B	95.789	95	4	0	3841	3935	796656286	796656192	2.170000e-33	154.0
36	TraesCS1D01G437300	chr7B	90.179	112	10	1	3835	3946	462238752	462238642	1.310000e-30	145.0
37	TraesCS1D01G437300	chr7A	90.541	74	7	0	596	669	640372105	640372178	1.030000e-16	99.0
38	TraesCS1D01G437300	chr6D	88.889	63	7	0	605	667	207063109	207063047	1.340000e-10	78.7
39	TraesCS1D01G437300	chr2A	94.595	37	2	0	617	653	656237303	656237339	1.750000e-04	58.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G437300	chr1D	484555092	484559597	4505	True	8322.000000	8322	100.0000	1	4506	1	chr1D.!!$R1	4505
1	TraesCS1D01G437300	chr1A	581870411	581874846	4435	True	1082.533333	4215	93.9625	1	4506	6	chr1A.!!$R1	4505
2	TraesCS1D01G437300	chr1B	674810528	674815041	4513	True	1008.266667	3168	91.8675	1	4506	6	chr1B.!!$R2	4505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
612	736	0.250234	CTGGGTGTCGGTCATCATGT	59.750	55.0	0.00	0.00	3.21	F
1335	1617	0.035458	AGTTCCCCTTCTTCACTGCG	59.965	55.0	0.00	0.00	5.18	F
1665	1956	0.036952	CTTGCACAGGACGACCATCT	60.037	55.0	6.71	38.94	2.90	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1594	1885	0.107456	AGCCCTCGATGCTGTATTGG	59.893	55.000	8.63	37.76	3.16	R
3198	3501	0.892755	CAGCATGCTTCAATGGGTGT	59.107	50.000	19.98	0.00	4.16	R
3552	3855	4.337555	AGCATCAATGTAAGAACTCCATGC	59.662	41.667	0.00	35.41	4.06	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
265	388	4.652421	TCAGACAGTAAACCAACGTACA	57.348	40.909	0.00	0.00	0.00	2.90
273	396	6.093771	ACAGTAAACCAACGTACAATTCAACA	59.906	34.615	0.00	0.00	0.00	3.33
279	402	7.966246	ACCAACGTACAATTCAACAGTATTA	57.034	32.000	0.00	0.00	0.00	0.98
287	410	5.827797	ACAATTCAACAGTATTATGGGCGAT	59.172	36.000	0.00	0.00	0.00	4.58
390	513	0.793478	CTCGCTTCGTACGTGGTCTG	60.793	60.000	16.05	2.15	0.00	3.51
457	581	4.740822	GTTGGAGCGGGTGGCCAT	62.741	66.667	9.72	0.00	45.17	4.40
494	618	1.216064	TGGGTGGCAGCATAATCTCT	58.784	50.000	19.48	0.00	0.00	3.10
531	655	5.048013	CACCTCATTCGACATAGGCATAGTA	60.048	44.000	6.12	0.00	31.98	1.82
560	684	7.607223	GGTCCTATATGACTCTACTATTGTCGT	59.393	40.741	7.91	0.00	35.54	4.34
601	725	4.750598	GTCTCTTAGTTTGTTCTGGGTGTC	59.249	45.833	0.00	0.00	0.00	3.67
603	727	2.536761	TAGTTTGTTCTGGGTGTCGG	57.463	50.000	0.00	0.00	0.00	4.79
612	736	0.250234	CTGGGTGTCGGTCATCATGT	59.750	55.000	0.00	0.00	0.00	3.21
614	738	1.338674	TGGGTGTCGGTCATCATGTTC	60.339	52.381	0.00	0.00	0.00	3.18
787	950	2.493278	CCCAGTTTGTTAGCCCAGAATG	59.507	50.000	0.00	0.00	0.00	2.67
805	968	4.805719	AGAATGGACGCATATGCATATACG	59.194	41.667	29.27	29.27	42.21	3.06
841	1010	1.865970	CAAGATGCCTCATCGAAGAGC	59.134	52.381	12.14	8.35	44.67	4.09
929	1101	1.439644	CGAGTTCCTCTAGCCTGCC	59.560	63.158	0.00	0.00	0.00	4.85
950	1122	4.465446	TCTCCCCTCCGGCTCAGG	62.465	72.222	0.00	0.00	0.00	3.86
960	1132	2.282040	GGCTCAGGCTGCACTGTT	60.282	61.111	10.34	0.00	39.48	3.16
1073	1295	6.239572	CCTTTCTCCTTGTTTCTCTCTCTCTT	60.240	42.308	0.00	0.00	0.00	2.85
1074	1296	5.975693	TCTCCTTGTTTCTCTCTCTCTTC	57.024	43.478	0.00	0.00	0.00	2.87
1138	1420	0.108804	TCGTTGCTGCCTAGTACTGC	60.109	55.000	5.39	1.41	0.00	4.40
1335	1617	0.035458	AGTTCCCCTTCTTCACTGCG	59.965	55.000	0.00	0.00	0.00	5.18
1336	1618	0.250338	GTTCCCCTTCTTCACTGCGT	60.250	55.000	0.00	0.00	0.00	5.24
1337	1619	0.472471	TTCCCCTTCTTCACTGCGTT	59.528	50.000	0.00	0.00	0.00	4.84
1338	1620	0.472471	TCCCCTTCTTCACTGCGTTT	59.528	50.000	0.00	0.00	0.00	3.60
1339	1621	0.593128	CCCCTTCTTCACTGCGTTTG	59.407	55.000	0.00	0.00	0.00	2.93
1340	1622	1.308998	CCCTTCTTCACTGCGTTTGT	58.691	50.000	0.00	0.00	0.00	2.83
1341	1623	1.002468	CCCTTCTTCACTGCGTTTGTG	60.002	52.381	0.00	0.00	36.82	3.33
1342	1624	1.939934	CCTTCTTCACTGCGTTTGTGA	59.060	47.619	3.81	3.81	41.94	3.58
1343	1625	2.549754	CCTTCTTCACTGCGTTTGTGAT	59.450	45.455	7.78	0.00	42.95	3.06
1393	1683	2.097791	CAGCCTCCTACTGTAACTCGAC	59.902	54.545	0.00	0.00	0.00	4.20
1424	1715	7.706607	AGGCTGTTGTTTTCTACTGAATTTTTC	59.293	33.333	0.00	0.00	31.56	2.29
1436	1727	8.744652	TCTACTGAATTTTTCCAGTGAACAAAA	58.255	29.630	7.57	0.00	42.88	2.44
1516	1807	3.699894	AGTGCGCTGCTGCTACCT	61.700	61.111	9.73	3.26	36.97	3.08
1523	1814	1.899437	GCTGCTGCTACCTGGTACCA	61.899	60.000	15.39	15.39	36.03	3.25
1543	1834	2.063541	AACAGTCAAGCTTGCGTGCC	62.064	55.000	21.99	6.68	0.00	5.01
1662	1953	2.280797	GCTTGCACAGGACGACCA	60.281	61.111	6.71	0.00	38.94	4.02
1665	1956	0.036952	CTTGCACAGGACGACCATCT	60.037	55.000	6.71	0.00	38.94	2.90
1667	1958	1.448540	GCACAGGACGACCATCTGG	60.449	63.158	6.71	0.00	38.94	3.86
1956	2250	2.034939	AGTTGTGCATGACAATGTGGTG	59.965	45.455	11.98	0.00	46.34	4.17
2332	2626	4.082408	TGGTCGTATTTCAGACAATCGAGT	60.082	41.667	0.00	0.00	39.01	4.18
2350	2644	4.927425	TCGAGTAAAGACAAAATAAGCGCT	59.073	37.500	2.64	2.64	0.00	5.92
2352	2646	5.389516	CGAGTAAAGACAAAATAAGCGCTGT	60.390	40.000	12.58	3.37	0.00	4.40
2397	2691	5.707298	GGAGAATGATTTCTGTCAGGTCAAA	59.293	40.000	0.00	0.00	42.34	2.69
2686	2980	2.156917	CAAAAGTCAGATGCTCAGCCA	58.843	47.619	0.00	0.00	0.00	4.75
2689	2983	0.252479	AGTCAGATGCTCAGCCAAGG	59.748	55.000	0.00	0.00	0.00	3.61
2712	3006	1.317613	GTGTTGGCATCCACAAGACA	58.682	50.000	11.60	0.00	40.57	3.41
2766	3060	5.527214	TGGACATTTCCTATATTTGTCTGCG	59.473	40.000	0.00	0.00	43.31	5.18
2940	3236	9.516314	TTTATGAGAATGTGATAAGTACAGACG	57.484	33.333	0.00	0.00	0.00	4.18
2946	3242	8.301720	AGAATGTGATAAGTACAGACGTTTACA	58.698	33.333	0.00	0.00	0.00	2.41
3052	3355	1.234821	TTTTGCTTGCAGTACTCCCG	58.765	50.000	0.00	0.00	0.00	5.14
3053	3356	1.234615	TTTGCTTGCAGTACTCCCGC	61.235	55.000	0.00	0.00	0.00	6.13
3094	3397	7.451255	TGGTGACATAATCTGAATTCCTTTGTT	59.549	33.333	2.27	0.00	33.40	2.83
3198	3501	4.495565	TCACCCTTTGGTCTTACTCCTTA	58.504	43.478	0.00	0.00	45.57	2.69
3232	3535	2.606961	GCTGCTGCACGCTACACAA	61.607	57.895	11.11	0.00	40.11	3.33
3548	3851	1.882623	GGCAGCAGGGTAGCATTTATC	59.117	52.381	0.00	0.00	36.85	1.75
3552	3855	3.504906	CAGCAGGGTAGCATTTATCCATG	59.495	47.826	0.00	0.00	36.85	3.66
3763	4069	5.293814	TGTGTGTTTTCTTTGCCATGATTTG	59.706	36.000	0.00	0.00	0.00	2.32
3823	4129	6.479990	GCATTGACAATATATAGCCTCGCATA	59.520	38.462	0.00	0.00	0.00	3.14
3867	4173	3.583086	CCCTCCGTCCCATAATGTAAGAT	59.417	47.826	0.00	0.00	0.00	2.40
3868	4174	4.563580	CCCTCCGTCCCATAATGTAAGATG	60.564	50.000	0.00	0.00	0.00	2.90
3871	4177	5.996644	TCCGTCCCATAATGTAAGATGTTT	58.003	37.500	0.00	0.00	0.00	2.83
3930	4241	3.769189	TGGGACAGAGGGAGTACAATA	57.231	47.619	0.00	0.00	0.00	1.90
4121	4435	8.370182	AGAGAATTGCATCTTTTTGGTTAATGT	58.630	29.630	0.00	0.00	0.00	2.71
4377	4804	1.388133	GAAATCCCAACCAGCCCCT	59.612	57.895	0.00	0.00	0.00	4.79
4378	4805	0.684479	GAAATCCCAACCAGCCCCTC	60.684	60.000	0.00	0.00	0.00	4.30

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
153	275	6.150140	GGTGGATTGATAAGTCTATGCCATTC	59.850	42.308	0.00	0.00	29.43	2.67
154	276	6.006449	GGTGGATTGATAAGTCTATGCCATT	58.994	40.000	0.00	0.00	29.43	3.16
265	388	6.959639	AATCGCCCATAATACTGTTGAATT	57.040	33.333	0.00	0.00	0.00	2.17
273	396	3.832527	AGCCAAAATCGCCCATAATACT	58.167	40.909	0.00	0.00	0.00	2.12
279	402	2.071778	ACATAGCCAAAATCGCCCAT	57.928	45.000	0.00	0.00	0.00	4.00
348	471	7.433131	CGAGTGCGTACAATAGAAAATAACCTA	59.567	37.037	6.38	0.00	0.00	3.08
457	581	2.883026	CCATGTTGGGTAAAACCTCCA	58.117	47.619	0.00	0.00	38.64	3.86
531	655	8.330247	ACAATAGTAGAGTCATATAGGACCGAT	58.670	37.037	13.67	3.36	38.59	4.18
601	725	3.052745	CGGATACAGAACATGATGACCG	58.947	50.000	0.00	9.51	0.00	4.79
603	727	2.802816	GGCGGATACAGAACATGATGAC	59.197	50.000	0.00	0.00	0.00	3.06
612	736	3.686622	GCATCAGGCGGATACAGAA	57.313	52.632	0.00	0.00	33.95	3.02
732	883	1.799548	GCCAGACGACTCCTCGATTTC	60.800	57.143	0.00	0.00	43.06	2.17
787	950	2.998668	GCGTATATGCATATGCGTCC	57.001	50.000	39.09	27.65	46.11	4.79
841	1010	3.054802	GGGCAGTGGATAGGAATAGGATG	60.055	52.174	0.00	0.00	0.00	3.51
914	1086	1.153269	GCAGGCAGGCTAGAGGAAC	60.153	63.158	0.00	0.00	0.00	3.62
960	1132	1.486211	GCCTAGGTCAGTAGGAGCAA	58.514	55.000	11.31	0.00	46.51	3.91
972	1144	3.780275	GGGAGGGAGGGCCTAGGT	61.780	72.222	5.73	0.00	0.00	3.08
1073	1295	1.813178	CCGAAGTGAGCAGTGTAGAGA	59.187	52.381	0.00	0.00	0.00	3.10
1074	1296	1.813178	TCCGAAGTGAGCAGTGTAGAG	59.187	52.381	0.00	0.00	0.00	2.43
1138	1420	3.305471	GGGAAGGCGAGCTACTATAAGTG	60.305	52.174	0.00	0.00	0.00	3.16
1337	1619	9.978044	TCAATGTATTCATTCACAAAATCACAA	57.022	25.926	0.00	0.00	41.66	3.33
1338	1620	9.409312	GTCAATGTATTCATTCACAAAATCACA	57.591	29.630	0.00	0.00	41.66	3.58
1339	1621	9.409312	TGTCAATGTATTCATTCACAAAATCAC	57.591	29.630	0.00	0.00	40.87	3.06
1342	1624	9.292846	CGATGTCAATGTATTCATTCACAAAAT	57.707	29.630	5.90	0.00	45.18	1.82
1343	1625	7.754475	CCGATGTCAATGTATTCATTCACAAAA	59.246	33.333	5.90	0.00	45.18	2.44
1393	1683	1.082104	GAAAACAACAGCCTCGCCG	60.082	57.895	0.00	0.00	0.00	6.46
1405	1695	8.287439	TCACTGGAAAAATTCAGTAGAAAACA	57.713	30.769	0.00	0.00	41.71	2.83
1436	1727	4.469657	TGGTTCAGTAAGCATTCAGGTTT	58.530	39.130	0.00	0.00	38.15	3.27
1438	1729	3.788227	TGGTTCAGTAAGCATTCAGGT	57.212	42.857	0.00	0.00	38.15	4.00
1516	1807	2.948979	CAAGCTTGACTGTTTGGTACCA	59.051	45.455	22.31	11.60	0.00	3.25
1523	1814	0.248621	GCACGCAAGCTTGACTGTTT	60.249	50.000	30.39	3.49	45.62	2.83
1594	1885	0.107456	AGCCCTCGATGCTGTATTGG	59.893	55.000	8.63	0.00	37.76	3.16
1662	1953	2.501316	TCGTTCATCCATGTCACCAGAT	59.499	45.455	0.00	0.00	0.00	2.90
1665	1956	2.631267	CATCGTTCATCCATGTCACCA	58.369	47.619	0.00	0.00	0.00	4.17
1667	1958	1.942657	CCCATCGTTCATCCATGTCAC	59.057	52.381	0.00	0.00	0.00	3.67
1668	1959	1.746861	GCCCATCGTTCATCCATGTCA	60.747	52.381	0.00	0.00	0.00	3.58
1788	2082	1.302511	CTCTGACAAACCACCGGGG	60.303	63.158	6.32	0.00	44.81	5.73
2332	2626	4.472286	GCACAGCGCTTATTTTGTCTTTA	58.528	39.130	7.50	0.00	37.77	1.85
2350	2644	2.237143	CTCCCATACCTTTCTCAGCACA	59.763	50.000	0.00	0.00	0.00	4.57
2352	2646	2.768527	CTCTCCCATACCTTTCTCAGCA	59.231	50.000	0.00	0.00	0.00	4.41
2397	2691	6.267699	TGACCATATACGAAGGATCATCTGTT	59.732	38.462	0.00	0.00	0.00	3.16
2554	2848	2.955660	TGTCACCACCCTTTTAAGCTTG	59.044	45.455	9.86	0.00	0.00	4.01
2686	2980	2.676471	GATGCCAACACCCGCCTT	60.676	61.111	0.00	0.00	0.00	4.35
2689	2983	3.747976	GTGGATGCCAACACCCGC	61.748	66.667	0.00	0.00	34.18	6.13
2712	3006	5.631119	TGGTTAGCCTCTCTTTAAGCTTTT	58.369	37.500	3.20	0.00	36.79	2.27
2766	3060	3.922240	TCAGAAACGTATTAGGACGCAAC	59.078	43.478	0.00	0.00	46.87	4.17
2940	3236	9.916397	CGATCACAAAAGTATTAGGATGTAAAC	57.084	33.333	0.00	0.00	0.00	2.01
2946	3242	5.992217	GGCTCGATCACAAAAGTATTAGGAT	59.008	40.000	0.00	0.00	0.00	3.24
3052	3355	2.027192	TCACCAACCATCTCTGTAAGGC	60.027	50.000	0.00	0.00	0.00	4.35
3053	3356	3.007940	TGTCACCAACCATCTCTGTAAGG	59.992	47.826	0.00	0.00	0.00	2.69
3198	3501	0.892755	CAGCATGCTTCAATGGGTGT	59.107	50.000	19.98	0.00	0.00	4.16
3240	3543	6.778821	TGGTGTCAGGAAAAGATGAAGATAA	58.221	36.000	0.00	0.00	0.00	1.75
3552	3855	4.337555	AGCATCAATGTAAGAACTCCATGC	59.662	41.667	0.00	0.00	35.41	4.06
3733	4039	3.303229	GGCAAAGAAAACACACAAGTTCG	59.697	43.478	0.00	0.00	0.00	3.95
3763	4069	4.036734	TGGTGATTTTTGTCTGTTCAGCTC	59.963	41.667	0.00	0.00	36.17	4.09
3843	4149	1.424638	ACATTATGGGACGGAGGGAG	58.575	55.000	0.00	0.00	0.00	4.30
3844	4150	2.779429	TACATTATGGGACGGAGGGA	57.221	50.000	0.00	0.00	0.00	4.20
3847	4153	5.215252	ACATCTTACATTATGGGACGGAG	57.785	43.478	0.00	0.00	0.00	4.63
3911	4217	6.075984	TCTTATATTGTACTCCCTCTGTCCC	58.924	44.000	0.00	0.00	0.00	4.46
3912	4218	7.784470	ATCTTATATTGTACTCCCTCTGTCC	57.216	40.000	0.00	0.00	0.00	4.02
3913	4219	9.084533	AGAATCTTATATTGTACTCCCTCTGTC	57.915	37.037	0.00	0.00	0.00	3.51
4004	4315	4.847255	CGAAAAGCGCCTTCCAAG	57.153	55.556	2.29	0.00	0.00	3.61
4262	4678	0.854218	TTTTAGGCACCACCCCTCAA	59.146	50.000	0.00	0.00	40.58	3.02
4264	4680	0.965866	GCTTTTAGGCACCACCCCTC	60.966	60.000	0.00	0.00	40.58	4.30
4265	4681	1.076727	GCTTTTAGGCACCACCCCT	59.923	57.895	0.00	0.00	40.58	4.79
4266	4682	0.330267	TAGCTTTTAGGCACCACCCC	59.670	55.000	0.00	0.00	40.58	4.95
4269	4685	1.095600	GGCTAGCTTTTAGGCACCAC	58.904	55.000	15.72	0.00	39.57	4.16
4270	4686	0.392461	CGGCTAGCTTTTAGGCACCA	60.392	55.000	15.72	0.00	39.74	4.17
4377	4804	1.303615	GGAGGGAGAGACGACTGGA	59.696	63.158	0.00	0.00	0.00	3.86
4378	4805	2.115911	CGGAGGGAGAGACGACTGG	61.116	68.421	0.00	0.00	0.00	4.00

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.