Multiple sequence alignment - TraesCS1D01G436700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G436700 chr1D 100.000 4613 0 0 1 4613 484299770 484304382 0.000000e+00 8519.0
1 TraesCS1D01G436700 chr1A 95.312 2837 111 10 781 3616 581540504 581543319 0.000000e+00 4482.0
2 TraesCS1D01G436700 chr1A 88.315 445 27 6 279 717 581509395 581509820 1.140000e-140 510.0
3 TraesCS1D01G436700 chr1A 97.635 296 7 0 4290 4585 581544075 581544370 4.120000e-140 508.0
4 TraesCS1D01G436700 chr1A 87.113 388 24 14 3922 4298 581543522 581543894 2.570000e-112 416.0
5 TraesCS1D01G436700 chr1B 95.566 2729 107 5 893 3616 674605749 674608468 0.000000e+00 4357.0
6 TraesCS1D01G436700 chr1B 90.323 527 40 6 4087 4613 674614304 674614819 0.000000e+00 680.0
7 TraesCS1D01G436700 chr1B 91.697 277 19 2 3 279 674576402 674576674 9.370000e-102 381.0
8 TraesCS1D01G436700 chr1B 82.971 276 28 11 334 601 674577299 674577563 9.980000e-57 231.0
9 TraesCS1D01G436700 chr1B 89.423 104 10 1 3922 4025 674608706 674608808 3.750000e-26 130.0
10 TraesCS1D01G436700 chr1B 87.879 99 10 2 3825 3922 674608520 674608617 1.050000e-21 115.0
11 TraesCS1D01G436700 chr4D 96.143 726 28 0 2686 3411 455258966 455259691 0.000000e+00 1186.0
12 TraesCS1D01G436700 chr5B 95.199 729 34 1 2686 3414 504043722 504042995 0.000000e+00 1151.0
13 TraesCS1D01G436700 chr3B 95.082 732 30 1 2686 3411 85095482 85096213 0.000000e+00 1147.0
14 TraesCS1D01G436700 chr6B 95.284 721 33 1 2686 3406 27634232 27634951 0.000000e+00 1142.0
15 TraesCS1D01G436700 chr6D 95.989 698 28 0 2686 3383 97558761 97558064 0.000000e+00 1134.0
16 TraesCS1D01G436700 chr7B 94.787 729 34 2 2686 3414 4604327 4603603 0.000000e+00 1133.0
17 TraesCS1D01G436700 chr7B 93.251 726 35 8 2686 3411 145929513 145930224 0.000000e+00 1057.0
18 TraesCS1D01G436700 chr7B 100.000 28 0 0 4102 4129 700354049 700354022 8.000000e-03 52.8
19 TraesCS1D01G436700 chr4A 85.714 63 7 2 2090 2151 75428561 75428500 1.070000e-06 65.8
20 TraesCS1D01G436700 chr2D 85.484 62 5 4 2090 2149 5231837 5231896 1.390000e-05 62.1
21 TraesCS1D01G436700 chr2B 84.375 64 8 2 2093 2155 789694160 789694098 1.390000e-05 62.1
22 TraesCS1D01G436700 chr2A 85.484 62 5 4 2090 2149 3796027 3796086 1.390000e-05 62.1
23 TraesCS1D01G436700 chr7A 100.000 28 0 0 4101 4128 663369984 663369957 8.000000e-03 52.8
24 TraesCS1D01G436700 chr3D 94.286 35 1 1 4095 4129 609102609 609102576 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G436700 chr1D 484299770 484304382 4612 False 8519 8519 100.000000 1 4613 1 chr1D.!!$F1 4612
1 TraesCS1D01G436700 chr1A 581540504 581544370 3866 False 1802 4482 93.353333 781 4585 3 chr1A.!!$F2 3804
2 TraesCS1D01G436700 chr1B 674605749 674608808 3059 False 1534 4357 90.956000 893 4025 3 chr1B.!!$F3 3132
3 TraesCS1D01G436700 chr1B 674614304 674614819 515 False 680 680 90.323000 4087 4613 1 chr1B.!!$F1 526
4 TraesCS1D01G436700 chr1B 674576402 674577563 1161 False 306 381 87.334000 3 601 2 chr1B.!!$F2 598
5 TraesCS1D01G436700 chr4D 455258966 455259691 725 False 1186 1186 96.143000 2686 3411 1 chr4D.!!$F1 725
6 TraesCS1D01G436700 chr5B 504042995 504043722 727 True 1151 1151 95.199000 2686 3414 1 chr5B.!!$R1 728
7 TraesCS1D01G436700 chr3B 85095482 85096213 731 False 1147 1147 95.082000 2686 3411 1 chr3B.!!$F1 725
8 TraesCS1D01G436700 chr6B 27634232 27634951 719 False 1142 1142 95.284000 2686 3406 1 chr6B.!!$F1 720
9 TraesCS1D01G436700 chr6D 97558064 97558761 697 True 1134 1134 95.989000 2686 3383 1 chr6D.!!$R1 697
10 TraesCS1D01G436700 chr7B 4603603 4604327 724 True 1133 1133 94.787000 2686 3414 1 chr7B.!!$R1 728
11 TraesCS1D01G436700 chr7B 145929513 145930224 711 False 1057 1057 93.251000 2686 3411 1 chr7B.!!$F1 725

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
494 495 0.036732 GATTGCCCCAGTGACTCACA 59.963 55.000 11.80 0.00 36.74 3.58 F
523 524 0.040425 CGACCCTGCCAAAACGAAAG 60.040 55.000 0.00 0.00 0.00 2.62 F
643 644 0.251474 TGGGCTGCATTGAGCTCTTT 60.251 50.000 16.19 0.00 45.94 2.52 F
739 740 0.329261 CTTGTGGATCCTCTGCCCAA 59.671 55.000 14.23 5.52 0.00 4.12 F
947 948 0.472352 ACCCCCGTCACTGTCCTTTA 60.472 55.000 0.00 0.00 0.00 1.85 F
993 999 1.077644 TCTTCTCCCTCCGACTCCG 60.078 63.158 0.00 0.00 0.00 4.63 F
994 1000 1.077644 CTTCTCCCTCCGACTCCGA 60.078 63.158 0.00 0.00 38.22 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2432 2438 2.093973 TCGGAGAAGAAGGTGAATGAGC 60.094 50.000 0.00 0.00 0.00 4.26 R
2601 2607 1.226323 GTACATGTCGACGAGCGCT 60.226 57.895 11.27 11.27 40.61 5.92 R
2850 2856 2.420129 GGCCTCCATGTTGTCGAAGTAT 60.420 50.000 0.00 0.00 0.00 2.12 R
3134 3368 2.582498 CCGCCTCGTCGAACATCC 60.582 66.667 0.00 0.00 0.00 3.51 R
3471 3708 1.538512 CTGCACATCCTGGTGTTCTTG 59.461 52.381 0.00 0.00 40.89 3.02 R
3549 3786 0.108804 GGAACCGAGAAGCATCACGA 60.109 55.000 10.33 0.00 41.41 4.35 R
3616 3853 2.105128 CATCTGGTCGCCCGTCTC 59.895 66.667 0.00 0.00 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 4.453478 TCTGAAGAAGCTTATGCACAGTTG 59.547 41.667 16.75 2.27 42.74 3.16
60 61 5.616270 TGCACAGTTGTAGGAAATGACTAA 58.384 37.500 0.00 0.00 0.00 2.24
95 96 5.387113 TTTGCACCTCATAGATAACCCAT 57.613 39.130 0.00 0.00 0.00 4.00
104 105 6.375455 CCTCATAGATAACCCATATTGTTGGC 59.625 42.308 0.00 0.00 35.29 4.52
127 128 4.762289 ATTTCCTCCAAGTGCTACTAGG 57.238 45.455 0.00 0.00 0.00 3.02
151 152 8.691797 AGGTAATAAGTTTCAAAGACTTTGCAA 58.308 29.630 20.95 14.88 40.43 4.08
180 181 8.621532 TTATATGTTCATTAGGAAGTCATGCC 57.378 34.615 0.00 0.00 35.82 4.40
185 186 0.178068 TTAGGAAGTCATGCCGGCTC 59.822 55.000 29.70 15.56 0.00 4.70
193 194 0.252761 TCATGCCGGCTCTCAAATGA 59.747 50.000 29.70 23.05 0.00 2.57
194 195 1.134007 TCATGCCGGCTCTCAAATGAT 60.134 47.619 29.70 6.09 0.00 2.45
242 243 6.452244 AACATAAAATCTTTTTCGTGCTGC 57.548 33.333 0.00 0.00 0.00 5.25
243 244 4.923281 ACATAAAATCTTTTTCGTGCTGCC 59.077 37.500 0.00 0.00 0.00 4.85
267 268 4.728882 GCTTCACAACTGACTGAACACAAG 60.729 45.833 0.00 0.00 0.00 3.16
279 280 4.080863 ACTGAACACAAGACCACTTCTTCT 60.081 41.667 0.00 0.00 43.23 2.85
280 281 4.843728 TGAACACAAGACCACTTCTTCTT 58.156 39.130 0.00 0.00 43.23 2.52
281 282 4.876107 TGAACACAAGACCACTTCTTCTTC 59.124 41.667 0.00 0.00 43.23 2.87
282 283 4.487714 ACACAAGACCACTTCTTCTTCA 57.512 40.909 0.00 0.00 43.23 3.02
283 284 4.192317 ACACAAGACCACTTCTTCTTCAC 58.808 43.478 0.00 0.00 43.23 3.18
285 286 4.272018 CACAAGACCACTTCTTCTTCACAG 59.728 45.833 0.00 0.00 43.23 3.66
287 288 3.309296 AGACCACTTCTTCTTCACAGGA 58.691 45.455 0.00 0.00 0.00 3.86
288 289 3.323403 AGACCACTTCTTCTTCACAGGAG 59.677 47.826 0.00 0.00 0.00 3.69
289 290 3.309296 ACCACTTCTTCTTCACAGGAGA 58.691 45.455 0.00 0.00 32.01 3.71
291 292 5.087323 ACCACTTCTTCTTCACAGGAGATA 58.913 41.667 0.00 0.00 34.26 1.98
292 293 5.544176 ACCACTTCTTCTTCACAGGAGATAA 59.456 40.000 0.00 0.00 34.26 1.75
293 294 6.214412 ACCACTTCTTCTTCACAGGAGATAAT 59.786 38.462 0.00 0.00 34.26 1.28
294 295 6.760770 CCACTTCTTCTTCACAGGAGATAATC 59.239 42.308 0.00 0.00 34.26 1.75
295 296 7.326454 CACTTCTTCTTCACAGGAGATAATCA 58.674 38.462 0.00 0.00 34.26 2.57
296 297 7.986320 CACTTCTTCTTCACAGGAGATAATCAT 59.014 37.037 0.00 0.00 34.26 2.45
297 298 8.547173 ACTTCTTCTTCACAGGAGATAATCATT 58.453 33.333 0.00 0.00 34.26 2.57
304 305 9.566530 CTTCACAGGAGATAATCATTATAGTCG 57.433 37.037 0.00 0.00 0.00 4.18
305 306 7.539436 TCACAGGAGATAATCATTATAGTCGC 58.461 38.462 0.00 0.00 0.00 5.19
306 307 7.176690 TCACAGGAGATAATCATTATAGTCGCA 59.823 37.037 0.00 0.00 0.00 5.10
307 308 7.978414 CACAGGAGATAATCATTATAGTCGCAT 59.022 37.037 0.00 0.00 0.00 4.73
308 309 7.978414 ACAGGAGATAATCATTATAGTCGCATG 59.022 37.037 0.00 0.00 0.00 4.06
309 310 8.193438 CAGGAGATAATCATTATAGTCGCATGA 58.807 37.037 0.00 0.00 0.00 3.07
310 311 8.412456 AGGAGATAATCATTATAGTCGCATGAG 58.588 37.037 0.00 0.00 30.52 2.90
311 312 7.168972 GGAGATAATCATTATAGTCGCATGAGC 59.831 40.741 0.00 0.00 30.52 4.26
312 313 7.550712 AGATAATCATTATAGTCGCATGAGCA 58.449 34.615 0.00 0.00 42.27 4.26
313 314 8.037166 AGATAATCATTATAGTCGCATGAGCAA 58.963 33.333 0.00 0.00 42.27 3.91
314 315 8.728337 ATAATCATTATAGTCGCATGAGCAAT 57.272 30.769 0.00 0.00 42.27 3.56
315 316 7.444629 AATCATTATAGTCGCATGAGCAATT 57.555 32.000 0.00 0.00 42.27 2.32
316 317 6.866010 TCATTATAGTCGCATGAGCAATTT 57.134 33.333 0.00 0.00 42.27 1.82
317 318 6.661669 TCATTATAGTCGCATGAGCAATTTG 58.338 36.000 0.00 0.00 42.27 2.32
318 319 6.260714 TCATTATAGTCGCATGAGCAATTTGT 59.739 34.615 0.00 0.00 42.27 2.83
319 320 7.440856 TCATTATAGTCGCATGAGCAATTTGTA 59.559 33.333 0.00 0.00 42.27 2.41
320 321 3.747099 AGTCGCATGAGCAATTTGTAC 57.253 42.857 0.00 0.00 42.27 2.90
321 322 3.073678 AGTCGCATGAGCAATTTGTACA 58.926 40.909 0.00 0.00 42.27 2.90
322 323 3.120199 AGTCGCATGAGCAATTTGTACAC 60.120 43.478 0.00 0.00 42.27 2.90
323 324 3.073678 TCGCATGAGCAATTTGTACACT 58.926 40.909 0.00 0.00 42.27 3.55
324 325 3.125146 TCGCATGAGCAATTTGTACACTC 59.875 43.478 0.00 0.00 42.27 3.51
325 326 3.419915 GCATGAGCAATTTGTACACTCG 58.580 45.455 0.00 0.00 41.58 4.18
326 327 3.419915 CATGAGCAATTTGTACACTCGC 58.580 45.455 0.00 0.00 0.00 5.03
327 328 2.488952 TGAGCAATTTGTACACTCGCA 58.511 42.857 0.00 0.00 0.00 5.10
328 329 2.875317 TGAGCAATTTGTACACTCGCAA 59.125 40.909 0.00 0.00 0.00 4.85
329 330 3.501828 TGAGCAATTTGTACACTCGCAAT 59.498 39.130 0.00 0.00 0.00 3.56
330 331 3.825308 AGCAATTTGTACACTCGCAATG 58.175 40.909 0.00 0.00 0.00 2.82
331 332 3.501828 AGCAATTTGTACACTCGCAATGA 59.498 39.130 0.00 0.00 0.00 2.57
332 333 4.023279 AGCAATTTGTACACTCGCAATGAA 60.023 37.500 0.00 0.00 0.00 2.57
333 334 4.088496 GCAATTTGTACACTCGCAATGAAC 59.912 41.667 0.00 0.00 0.00 3.18
334 335 5.211454 CAATTTGTACACTCGCAATGAACA 58.789 37.500 0.00 0.00 0.00 3.18
335 336 5.627499 ATTTGTACACTCGCAATGAACAT 57.373 34.783 0.00 0.00 0.00 2.71
336 337 4.403015 TTGTACACTCGCAATGAACATG 57.597 40.909 0.00 0.00 0.00 3.21
337 338 2.741517 TGTACACTCGCAATGAACATGG 59.258 45.455 0.00 0.00 0.00 3.66
338 339 1.167851 ACACTCGCAATGAACATGGG 58.832 50.000 0.00 0.00 0.00 4.00
339 340 1.167851 CACTCGCAATGAACATGGGT 58.832 50.000 0.00 0.00 32.98 4.51
340 341 2.290008 ACACTCGCAATGAACATGGGTA 60.290 45.455 0.00 0.00 32.98 3.69
341 342 2.352651 CACTCGCAATGAACATGGGTAG 59.647 50.000 0.00 0.00 32.98 3.18
342 343 2.027192 ACTCGCAATGAACATGGGTAGT 60.027 45.455 0.00 0.00 32.98 2.73
343 344 3.196901 ACTCGCAATGAACATGGGTAGTA 59.803 43.478 0.00 0.00 32.98 1.82
344 345 4.141711 ACTCGCAATGAACATGGGTAGTAT 60.142 41.667 0.00 0.00 32.98 2.12
345 346 5.069914 ACTCGCAATGAACATGGGTAGTATA 59.930 40.000 0.00 0.00 32.98 1.47
346 347 6.109156 TCGCAATGAACATGGGTAGTATAT 57.891 37.500 0.00 0.00 32.98 0.86
347 348 5.931724 TCGCAATGAACATGGGTAGTATATG 59.068 40.000 0.00 0.00 32.98 1.78
348 349 5.931724 CGCAATGAACATGGGTAGTATATGA 59.068 40.000 0.00 0.00 0.00 2.15
349 350 6.426633 CGCAATGAACATGGGTAGTATATGAA 59.573 38.462 0.00 0.00 0.00 2.57
350 351 7.571244 CGCAATGAACATGGGTAGTATATGAAC 60.571 40.741 0.00 0.00 0.00 3.18
351 352 7.228507 GCAATGAACATGGGTAGTATATGAACA 59.771 37.037 0.00 0.00 0.00 3.18
352 353 9.288576 CAATGAACATGGGTAGTATATGAACAT 57.711 33.333 0.00 0.00 0.00 2.71
353 354 8.853077 ATGAACATGGGTAGTATATGAACATG 57.147 34.615 0.00 0.00 39.88 3.21
354 355 7.223584 TGAACATGGGTAGTATATGAACATGG 58.776 38.462 0.00 0.00 38.72 3.66
355 356 6.126863 ACATGGGTAGTATATGAACATGGG 57.873 41.667 0.00 0.00 38.72 4.00
356 357 5.610982 ACATGGGTAGTATATGAACATGGGT 59.389 40.000 0.00 0.00 38.72 4.51
357 358 5.560722 TGGGTAGTATATGAACATGGGTG 57.439 43.478 0.00 0.00 0.00 4.61
358 359 4.972568 TGGGTAGTATATGAACATGGGTGT 59.027 41.667 0.00 0.00 41.28 4.16
359 360 6.144625 TGGGTAGTATATGAACATGGGTGTA 58.855 40.000 0.00 0.00 37.67 2.90
360 361 6.616137 TGGGTAGTATATGAACATGGGTGTAA 59.384 38.462 0.00 0.00 37.67 2.41
361 362 7.293771 TGGGTAGTATATGAACATGGGTGTAAT 59.706 37.037 0.00 0.00 37.67 1.89
362 363 8.161425 GGGTAGTATATGAACATGGGTGTAATT 58.839 37.037 0.00 0.00 37.67 1.40
370 371 7.873719 TGAACATGGGTGTAATTATACCTTG 57.126 36.000 25.27 23.26 37.67 3.61
371 372 6.831353 TGAACATGGGTGTAATTATACCTTGG 59.169 38.462 25.27 17.93 37.67 3.61
372 373 5.137551 ACATGGGTGTAATTATACCTTGGC 58.862 41.667 25.27 12.88 37.58 4.52
373 374 4.864483 TGGGTGTAATTATACCTTGGCA 57.136 40.909 25.27 14.90 37.58 4.92
374 375 4.787551 TGGGTGTAATTATACCTTGGCAG 58.212 43.478 25.27 0.00 37.58 4.85
375 376 4.228666 TGGGTGTAATTATACCTTGGCAGT 59.771 41.667 25.27 0.00 37.58 4.40
376 377 5.429109 TGGGTGTAATTATACCTTGGCAGTA 59.571 40.000 25.27 5.25 37.58 2.74
377 378 6.069556 TGGGTGTAATTATACCTTGGCAGTAA 60.070 38.462 25.27 3.85 37.58 2.24
378 379 6.485648 GGGTGTAATTATACCTTGGCAGTAAG 59.514 42.308 25.27 0.00 37.58 2.34
379 380 7.277396 GGTGTAATTATACCTTGGCAGTAAGA 58.723 38.462 20.82 0.00 34.94 2.10
380 381 7.937394 GGTGTAATTATACCTTGGCAGTAAGAT 59.063 37.037 20.82 0.00 34.94 2.40
381 382 9.991906 GTGTAATTATACCTTGGCAGTAAGATA 57.008 33.333 1.06 0.00 0.00 1.98
390 391 7.283329 ACCTTGGCAGTAAGATATTTTCTAGG 58.717 38.462 0.00 0.00 33.05 3.02
391 392 7.092399 ACCTTGGCAGTAAGATATTTTCTAGGT 60.092 37.037 0.00 0.00 33.05 3.08
392 393 7.227512 CCTTGGCAGTAAGATATTTTCTAGGTG 59.772 40.741 0.00 0.00 33.05 4.00
393 394 7.432148 TGGCAGTAAGATATTTTCTAGGTGA 57.568 36.000 0.00 0.00 33.05 4.02
394 395 7.857456 TGGCAGTAAGATATTTTCTAGGTGAA 58.143 34.615 0.00 0.00 33.05 3.18
395 396 8.325787 TGGCAGTAAGATATTTTCTAGGTGAAA 58.674 33.333 0.00 0.00 42.33 2.69
480 481 8.348507 CCATTAGGTTCTCTATTTTGAGATTGC 58.651 37.037 0.00 0.00 41.98 3.56
481 482 7.865706 TTAGGTTCTCTATTTTGAGATTGCC 57.134 36.000 0.00 0.00 41.98 4.52
482 483 5.196695 AGGTTCTCTATTTTGAGATTGCCC 58.803 41.667 0.00 0.00 41.98 5.36
483 484 4.339530 GGTTCTCTATTTTGAGATTGCCCC 59.660 45.833 0.00 0.00 41.98 5.80
484 485 4.860802 TCTCTATTTTGAGATTGCCCCA 57.139 40.909 0.00 0.00 38.08 4.96
485 486 4.785301 TCTCTATTTTGAGATTGCCCCAG 58.215 43.478 0.00 0.00 38.08 4.45
486 487 4.228210 TCTCTATTTTGAGATTGCCCCAGT 59.772 41.667 0.00 0.00 38.08 4.00
487 488 4.272489 TCTATTTTGAGATTGCCCCAGTG 58.728 43.478 0.00 0.00 0.00 3.66
488 489 2.673775 TTTTGAGATTGCCCCAGTGA 57.326 45.000 0.00 0.00 0.00 3.41
489 490 1.909700 TTTGAGATTGCCCCAGTGAC 58.090 50.000 0.00 0.00 0.00 3.67
490 491 1.067295 TTGAGATTGCCCCAGTGACT 58.933 50.000 0.00 0.00 0.00 3.41
491 492 0.615331 TGAGATTGCCCCAGTGACTC 59.385 55.000 0.00 0.00 0.00 3.36
492 493 0.615331 GAGATTGCCCCAGTGACTCA 59.385 55.000 0.00 0.00 0.00 3.41
493 494 0.326264 AGATTGCCCCAGTGACTCAC 59.674 55.000 0.38 0.38 34.10 3.51
494 495 0.036732 GATTGCCCCAGTGACTCACA 59.963 55.000 11.80 0.00 36.74 3.58
495 496 0.700564 ATTGCCCCAGTGACTCACAT 59.299 50.000 11.80 0.00 36.74 3.21
496 497 0.478072 TTGCCCCAGTGACTCACATT 59.522 50.000 11.80 0.00 36.74 2.71
497 498 1.357137 TGCCCCAGTGACTCACATTA 58.643 50.000 11.80 0.00 36.74 1.90
498 499 1.278985 TGCCCCAGTGACTCACATTAG 59.721 52.381 11.80 0.00 36.74 1.73
499 500 1.555075 GCCCCAGTGACTCACATTAGA 59.445 52.381 11.80 0.00 36.74 2.10
500 501 2.678190 GCCCCAGTGACTCACATTAGAC 60.678 54.545 11.80 0.00 36.74 2.59
501 502 2.834549 CCCCAGTGACTCACATTAGACT 59.165 50.000 11.80 0.00 36.74 3.24
502 503 4.023980 CCCCAGTGACTCACATTAGACTA 58.976 47.826 11.80 0.00 36.74 2.59
503 504 4.651503 CCCCAGTGACTCACATTAGACTAT 59.348 45.833 11.80 0.00 36.74 2.12
504 505 5.221342 CCCCAGTGACTCACATTAGACTATC 60.221 48.000 11.80 0.00 36.74 2.08
505 506 5.506483 CCCAGTGACTCACATTAGACTATCG 60.506 48.000 11.80 0.00 36.74 2.92
506 507 5.297029 CCAGTGACTCACATTAGACTATCGA 59.703 44.000 11.80 0.00 36.74 3.59
507 508 6.195868 CAGTGACTCACATTAGACTATCGAC 58.804 44.000 11.80 0.00 36.74 4.20
508 509 5.297278 AGTGACTCACATTAGACTATCGACC 59.703 44.000 11.80 0.00 36.74 4.79
509 510 4.579340 TGACTCACATTAGACTATCGACCC 59.421 45.833 0.00 0.00 0.00 4.46
510 511 4.794334 ACTCACATTAGACTATCGACCCT 58.206 43.478 0.00 0.00 0.00 4.34
511 512 4.580995 ACTCACATTAGACTATCGACCCTG 59.419 45.833 0.00 0.00 0.00 4.45
512 513 3.318275 TCACATTAGACTATCGACCCTGC 59.682 47.826 0.00 0.00 0.00 4.85
513 514 2.628657 ACATTAGACTATCGACCCTGCC 59.371 50.000 0.00 0.00 0.00 4.85
514 515 2.447408 TTAGACTATCGACCCTGCCA 57.553 50.000 0.00 0.00 0.00 4.92
515 516 2.447408 TAGACTATCGACCCTGCCAA 57.553 50.000 0.00 0.00 0.00 4.52
516 517 1.568504 AGACTATCGACCCTGCCAAA 58.431 50.000 0.00 0.00 0.00 3.28
517 518 1.906574 AGACTATCGACCCTGCCAAAA 59.093 47.619 0.00 0.00 0.00 2.44
518 519 2.007608 GACTATCGACCCTGCCAAAAC 58.992 52.381 0.00 0.00 0.00 2.43
519 520 1.006832 CTATCGACCCTGCCAAAACG 58.993 55.000 0.00 0.00 0.00 3.60
520 521 0.609151 TATCGACCCTGCCAAAACGA 59.391 50.000 0.00 0.00 0.00 3.85
521 522 0.250553 ATCGACCCTGCCAAAACGAA 60.251 50.000 0.00 0.00 33.77 3.85
522 523 0.464013 TCGACCCTGCCAAAACGAAA 60.464 50.000 0.00 0.00 0.00 3.46
523 524 0.040425 CGACCCTGCCAAAACGAAAG 60.040 55.000 0.00 0.00 0.00 2.62
524 525 1.314730 GACCCTGCCAAAACGAAAGA 58.685 50.000 0.00 0.00 0.00 2.52
525 526 1.886542 GACCCTGCCAAAACGAAAGAT 59.113 47.619 0.00 0.00 0.00 2.40
526 527 3.078837 GACCCTGCCAAAACGAAAGATA 58.921 45.455 0.00 0.00 0.00 1.98
527 528 2.817844 ACCCTGCCAAAACGAAAGATAC 59.182 45.455 0.00 0.00 0.00 2.24
528 529 3.081804 CCCTGCCAAAACGAAAGATACT 58.918 45.455 0.00 0.00 0.00 2.12
529 530 4.258543 CCCTGCCAAAACGAAAGATACTA 58.741 43.478 0.00 0.00 0.00 1.82
530 531 4.698304 CCCTGCCAAAACGAAAGATACTAA 59.302 41.667 0.00 0.00 0.00 2.24
531 532 5.182380 CCCTGCCAAAACGAAAGATACTAAA 59.818 40.000 0.00 0.00 0.00 1.85
532 533 6.127730 CCCTGCCAAAACGAAAGATACTAAAT 60.128 38.462 0.00 0.00 0.00 1.40
533 534 7.312899 CCTGCCAAAACGAAAGATACTAAATT 58.687 34.615 0.00 0.00 0.00 1.82
534 535 7.812669 CCTGCCAAAACGAAAGATACTAAATTT 59.187 33.333 0.00 0.00 0.00 1.82
535 536 9.191995 CTGCCAAAACGAAAGATACTAAATTTT 57.808 29.630 0.00 0.00 0.00 1.82
536 537 9.535878 TGCCAAAACGAAAGATACTAAATTTTT 57.464 25.926 0.00 0.00 0.00 1.94
604 605 9.847224 AACAAAACAACTAATCTCTCCTTTAGA 57.153 29.630 0.00 0.00 31.36 2.10
620 621 8.686334 TCTCCTTTAGATTGTATTGATTTTGGC 58.314 33.333 0.00 0.00 0.00 4.52
621 622 8.593945 TCCTTTAGATTGTATTGATTTTGGCT 57.406 30.769 0.00 0.00 0.00 4.75
622 623 9.034800 TCCTTTAGATTGTATTGATTTTGGCTT 57.965 29.630 0.00 0.00 0.00 4.35
623 624 9.090692 CCTTTAGATTGTATTGATTTTGGCTTG 57.909 33.333 0.00 0.00 0.00 4.01
624 625 9.643693 CTTTAGATTGTATTGATTTTGGCTTGT 57.356 29.630 0.00 0.00 0.00 3.16
625 626 8.984891 TTAGATTGTATTGATTTTGGCTTGTG 57.015 30.769 0.00 0.00 0.00 3.33
626 627 6.400568 AGATTGTATTGATTTTGGCTTGTGG 58.599 36.000 0.00 0.00 0.00 4.17
627 628 4.533919 TGTATTGATTTTGGCTTGTGGG 57.466 40.909 0.00 0.00 0.00 4.61
628 629 2.477845 ATTGATTTTGGCTTGTGGGC 57.522 45.000 0.00 0.00 41.27 5.36
629 630 1.422531 TTGATTTTGGCTTGTGGGCT 58.577 45.000 0.00 0.00 41.48 5.19
630 631 0.680618 TGATTTTGGCTTGTGGGCTG 59.319 50.000 0.00 0.00 41.48 4.85
631 632 0.671472 GATTTTGGCTTGTGGGCTGC 60.671 55.000 0.00 0.00 41.48 5.25
632 633 1.409251 ATTTTGGCTTGTGGGCTGCA 61.409 50.000 0.50 0.00 41.48 4.41
633 634 1.409251 TTTTGGCTTGTGGGCTGCAT 61.409 50.000 0.50 0.00 41.48 3.96
634 635 1.409251 TTTGGCTTGTGGGCTGCATT 61.409 50.000 0.50 0.00 41.48 3.56
635 636 2.102109 TTGGCTTGTGGGCTGCATTG 62.102 55.000 0.50 0.00 41.48 2.82
636 637 2.277591 GGCTTGTGGGCTGCATTGA 61.278 57.895 0.50 0.00 37.53 2.57
637 638 1.214589 GCTTGTGGGCTGCATTGAG 59.785 57.895 0.50 0.00 0.00 3.02
638 639 1.214589 CTTGTGGGCTGCATTGAGC 59.785 57.895 0.50 0.00 45.96 4.26
639 640 1.228644 TTGTGGGCTGCATTGAGCT 60.229 52.632 0.50 0.00 45.94 4.09
640 641 1.246056 TTGTGGGCTGCATTGAGCTC 61.246 55.000 6.82 6.82 45.94 4.09
641 642 1.378250 GTGGGCTGCATTGAGCTCT 60.378 57.895 16.19 0.00 45.94 4.09
642 643 0.964358 GTGGGCTGCATTGAGCTCTT 60.964 55.000 16.19 0.00 45.94 2.85
643 644 0.251474 TGGGCTGCATTGAGCTCTTT 60.251 50.000 16.19 0.00 45.94 2.52
644 645 0.893447 GGGCTGCATTGAGCTCTTTT 59.107 50.000 16.19 0.00 45.94 2.27
645 646 2.094675 GGGCTGCATTGAGCTCTTTTA 58.905 47.619 16.19 0.00 45.94 1.52
646 647 2.692041 GGGCTGCATTGAGCTCTTTTAT 59.308 45.455 16.19 0.47 45.94 1.40
647 648 3.885297 GGGCTGCATTGAGCTCTTTTATA 59.115 43.478 16.19 0.00 45.94 0.98
648 649 4.339247 GGGCTGCATTGAGCTCTTTTATAA 59.661 41.667 16.19 0.00 45.94 0.98
649 650 5.277047 GGCTGCATTGAGCTCTTTTATAAC 58.723 41.667 16.19 0.00 45.94 1.89
650 651 5.067023 GGCTGCATTGAGCTCTTTTATAACT 59.933 40.000 16.19 0.00 45.94 2.24
651 652 5.970023 GCTGCATTGAGCTCTTTTATAACTG 59.030 40.000 16.19 0.00 45.94 3.16
652 653 6.404074 GCTGCATTGAGCTCTTTTATAACTGT 60.404 38.462 16.19 0.00 45.94 3.55
653 654 7.076842 TGCATTGAGCTCTTTTATAACTGTC 57.923 36.000 16.19 0.00 45.94 3.51
654 655 6.881065 TGCATTGAGCTCTTTTATAACTGTCT 59.119 34.615 16.19 0.00 45.94 3.41
655 656 7.391554 TGCATTGAGCTCTTTTATAACTGTCTT 59.608 33.333 16.19 0.00 45.94 3.01
656 657 8.239998 GCATTGAGCTCTTTTATAACTGTCTTT 58.760 33.333 16.19 0.00 41.15 2.52
671 672 7.933215 AACTGTCTTTTTAACACACCTACTT 57.067 32.000 0.00 0.00 0.00 2.24
672 673 7.316544 ACTGTCTTTTTAACACACCTACTTG 57.683 36.000 0.00 0.00 0.00 3.16
673 674 6.882678 ACTGTCTTTTTAACACACCTACTTGT 59.117 34.615 0.00 0.00 0.00 3.16
674 675 7.392393 ACTGTCTTTTTAACACACCTACTTGTT 59.608 33.333 0.00 0.00 39.31 2.83
675 676 8.113173 TGTCTTTTTAACACACCTACTTGTTT 57.887 30.769 0.00 0.00 37.19 2.83
676 677 8.238631 TGTCTTTTTAACACACCTACTTGTTTC 58.761 33.333 0.00 0.00 37.19 2.78
677 678 8.238631 GTCTTTTTAACACACCTACTTGTTTCA 58.761 33.333 0.00 0.00 37.19 2.69
678 679 8.455682 TCTTTTTAACACACCTACTTGTTTCAG 58.544 33.333 0.00 0.00 37.19 3.02
679 680 7.925043 TTTTAACACACCTACTTGTTTCAGA 57.075 32.000 0.00 0.00 37.19 3.27
680 681 7.925043 TTTAACACACCTACTTGTTTCAGAA 57.075 32.000 0.00 0.00 37.19 3.02
681 682 7.925043 TTAACACACCTACTTGTTTCAGAAA 57.075 32.000 0.00 0.00 37.19 2.52
682 683 6.436843 AACACACCTACTTGTTTCAGAAAG 57.563 37.500 0.00 0.00 31.78 2.62
683 684 4.881850 ACACACCTACTTGTTTCAGAAAGG 59.118 41.667 0.00 0.00 0.00 3.11
684 685 5.123227 CACACCTACTTGTTTCAGAAAGGA 58.877 41.667 0.00 0.00 0.00 3.36
685 686 5.765182 CACACCTACTTGTTTCAGAAAGGAT 59.235 40.000 0.00 0.00 0.00 3.24
686 687 6.263168 CACACCTACTTGTTTCAGAAAGGATT 59.737 38.462 0.00 0.00 0.00 3.01
687 688 7.444183 CACACCTACTTGTTTCAGAAAGGATTA 59.556 37.037 0.00 0.00 0.00 1.75
688 689 7.996644 ACACCTACTTGTTTCAGAAAGGATTAA 59.003 33.333 0.00 0.00 0.00 1.40
689 690 8.846211 CACCTACTTGTTTCAGAAAGGATTAAA 58.154 33.333 0.00 0.00 0.00 1.52
690 691 9.588096 ACCTACTTGTTTCAGAAAGGATTAAAT 57.412 29.630 0.00 0.00 0.00 1.40
732 733 8.561738 TGTCTTAATAAAACTTGTGGATCCTC 57.438 34.615 14.23 10.39 0.00 3.71
733 734 8.383175 TGTCTTAATAAAACTTGTGGATCCTCT 58.617 33.333 14.23 0.00 0.00 3.69
734 735 8.669243 GTCTTAATAAAACTTGTGGATCCTCTG 58.331 37.037 14.23 9.24 0.00 3.35
735 736 5.904362 AATAAAACTTGTGGATCCTCTGC 57.096 39.130 14.23 1.40 0.00 4.26
736 737 2.206576 AAACTTGTGGATCCTCTGCC 57.793 50.000 14.23 0.00 0.00 4.85
737 738 0.329596 AACTTGTGGATCCTCTGCCC 59.670 55.000 14.23 0.00 0.00 5.36
738 739 0.842030 ACTTGTGGATCCTCTGCCCA 60.842 55.000 14.23 0.00 0.00 5.36
739 740 0.329261 CTTGTGGATCCTCTGCCCAA 59.671 55.000 14.23 5.52 0.00 4.12
740 741 1.002069 TTGTGGATCCTCTGCCCAAT 58.998 50.000 14.23 0.00 0.00 3.16
741 742 1.002069 TGTGGATCCTCTGCCCAATT 58.998 50.000 14.23 0.00 0.00 2.32
742 743 1.358787 TGTGGATCCTCTGCCCAATTT 59.641 47.619 14.23 0.00 0.00 1.82
743 744 2.225343 TGTGGATCCTCTGCCCAATTTT 60.225 45.455 14.23 0.00 0.00 1.82
744 745 2.833943 GTGGATCCTCTGCCCAATTTTT 59.166 45.455 14.23 0.00 0.00 1.94
778 779 8.553459 TTTTTAAATTTGAAAGTGCCTGTTCA 57.447 26.923 8.00 0.00 31.99 3.18
779 780 8.729805 TTTTAAATTTGAAAGTGCCTGTTCAT 57.270 26.923 4.15 0.00 33.90 2.57
789 790 1.135315 CCTGTTCATTTCCTGCGCG 59.865 57.895 0.00 0.00 0.00 6.86
801 802 4.615834 TGCGCGTTTGAAACCGGC 62.616 61.111 8.43 13.47 0.00 6.13
802 803 4.615834 GCGCGTTTGAAACCGGCA 62.616 61.111 8.43 0.00 0.00 5.69
809 810 2.661594 GTTTGAAACCGGCATTGACTC 58.338 47.619 0.00 0.00 0.00 3.36
814 815 4.776322 CCGGCATTGACTCGGGCA 62.776 66.667 0.00 0.00 40.07 5.36
840 841 5.753721 TTAAGGCAAACTTGGGCATTTAT 57.246 34.783 0.00 0.00 40.37 1.40
841 842 4.639078 AAGGCAAACTTGGGCATTTATT 57.361 36.364 0.00 0.00 38.21 1.40
842 843 4.639078 AGGCAAACTTGGGCATTTATTT 57.361 36.364 0.00 0.00 0.00 1.40
843 844 5.753721 AGGCAAACTTGGGCATTTATTTA 57.246 34.783 0.00 0.00 0.00 1.40
847 848 5.812127 GCAAACTTGGGCATTTATTTAGAGG 59.188 40.000 0.00 0.00 0.00 3.69
858 859 8.303876 GGCATTTATTTAGAGGTCTGTTTGAAA 58.696 33.333 0.00 0.00 0.00 2.69
867 868 7.326968 AGAGGTCTGTTTGAAAGAAAGAAAG 57.673 36.000 0.00 0.00 0.00 2.62
870 871 8.122472 AGGTCTGTTTGAAAGAAAGAAAGAAA 57.878 30.769 0.00 0.00 0.00 2.52
871 872 8.585018 AGGTCTGTTTGAAAGAAAGAAAGAAAA 58.415 29.630 0.00 0.00 0.00 2.29
912 913 2.195683 CAGCCCGGCCCATAATGT 59.804 61.111 5.55 0.00 0.00 2.71
931 932 4.460948 TGTAATTACCTCACTCGAACCC 57.539 45.455 13.01 0.00 0.00 4.11
943 944 2.346365 GAACCCCCGTCACTGTCC 59.654 66.667 0.00 0.00 0.00 4.02
947 948 0.472352 ACCCCCGTCACTGTCCTTTA 60.472 55.000 0.00 0.00 0.00 1.85
992 998 1.388837 GCTCTTCTCCCTCCGACTCC 61.389 65.000 0.00 0.00 0.00 3.85
993 999 1.077644 TCTTCTCCCTCCGACTCCG 60.078 63.158 0.00 0.00 0.00 4.63
994 1000 1.077644 CTTCTCCCTCCGACTCCGA 60.078 63.158 0.00 0.00 38.22 4.55
1023 1029 3.554342 CAGGCCATCTCCCTCCCG 61.554 72.222 5.01 0.00 0.00 5.14
1110 1116 3.138798 GGAGCCTACTCGCCGTCA 61.139 66.667 0.00 0.00 44.48 4.35
1250 1256 1.517475 GCGAGAAGTCTCCGGAAGC 60.517 63.158 5.23 0.43 39.79 3.86
2015 2021 4.280019 GGTGGCCAACTCGGGGTT 62.280 66.667 15.48 0.00 38.93 4.11
2021 2027 2.264794 CAACTCGGGGTTCCTCGG 59.735 66.667 11.32 4.86 35.74 4.63
2432 2438 4.514577 CAGCGGCGACTACCAGGG 62.515 72.222 12.98 0.00 0.00 4.45
2601 2607 2.322830 CGAGGTCGTCGTCTCCACA 61.323 63.158 6.77 0.00 44.20 4.17
2850 2856 2.747686 GTCACCGAAGCCTGGGAA 59.252 61.111 0.00 0.00 0.00 3.97
3134 3368 2.507102 CCTGTACGAGCAGCACCG 60.507 66.667 0.00 0.00 35.28 4.94
3546 3783 1.750399 GTGTGGGCGGCAGATCATT 60.750 57.895 12.47 0.00 0.00 2.57
3549 3786 0.749454 GTGGGCGGCAGATCATTCTT 60.749 55.000 12.47 0.00 0.00 2.52
3616 3853 0.027716 CGACGACTACTGGTGATCGG 59.972 60.000 11.21 0.00 38.88 4.18
3617 3854 1.376543 GACGACTACTGGTGATCGGA 58.623 55.000 11.21 0.00 38.88 4.55
3618 3855 1.331138 GACGACTACTGGTGATCGGAG 59.669 57.143 11.21 0.00 38.88 4.63
3619 3856 1.065636 ACGACTACTGGTGATCGGAGA 60.066 52.381 11.21 0.00 45.75 3.71
3620 3857 1.331138 CGACTACTGGTGATCGGAGAC 59.669 57.143 0.00 0.00 42.51 3.36
3639 3876 2.105128 GGCGACCAGATGGACTCG 59.895 66.667 5.72 6.69 36.94 4.18
3640 3877 2.583593 GCGACCAGATGGACTCGC 60.584 66.667 17.59 17.59 47.00 5.03
3641 3878 3.201494 CGACCAGATGGACTCGCT 58.799 61.111 5.72 0.00 38.94 4.93
3642 3879 1.064946 CGACCAGATGGACTCGCTC 59.935 63.158 5.72 0.00 38.94 5.03
3643 3880 1.064946 GACCAGATGGACTCGCTCG 59.935 63.158 5.72 0.00 38.94 5.03
3644 3881 2.279120 CCAGATGGACTCGCTCGC 60.279 66.667 0.00 0.00 37.39 5.03
3645 3882 2.279120 CAGATGGACTCGCTCGCC 60.279 66.667 0.00 0.00 0.00 5.54
3646 3883 3.893763 AGATGGACTCGCTCGCCG 61.894 66.667 0.00 0.00 38.61 6.46
3647 3884 4.933064 GATGGACTCGCTCGCCGG 62.933 72.222 0.00 0.00 37.59 6.13
3650 3887 4.549516 GGACTCGCTCGCCGGTAC 62.550 72.222 1.90 0.00 37.59 3.34
3651 3888 3.507009 GACTCGCTCGCCGGTACT 61.507 66.667 1.90 0.00 37.59 2.73
3652 3889 3.736482 GACTCGCTCGCCGGTACTG 62.736 68.421 1.90 0.00 37.59 2.74
3653 3890 4.554363 CTCGCTCGCCGGTACTGG 62.554 72.222 17.09 17.09 37.59 4.00
3661 3898 4.524318 CCGGTACTGGCGCGGATT 62.524 66.667 8.07 0.00 0.00 3.01
3662 3899 3.261951 CGGTACTGGCGCGGATTG 61.262 66.667 8.83 0.00 0.00 2.67
3663 3900 2.895372 GGTACTGGCGCGGATTGG 60.895 66.667 8.83 0.00 0.00 3.16
3664 3901 2.125269 GTACTGGCGCGGATTGGT 60.125 61.111 8.83 0.00 0.00 3.67
3665 3902 2.125310 TACTGGCGCGGATTGGTG 60.125 61.111 8.83 0.00 0.00 4.17
3669 3906 4.776647 GGCGCGGATTGGTGCAAC 62.777 66.667 8.83 0.00 45.00 4.17
3671 3908 4.459331 CGCGGATTGGTGCAACGG 62.459 66.667 0.00 0.00 38.12 4.44
3672 3909 3.361977 GCGGATTGGTGCAACGGT 61.362 61.111 0.00 0.00 38.12 4.83
3673 3910 2.914908 GCGGATTGGTGCAACGGTT 61.915 57.895 0.00 0.00 38.12 4.44
3674 3911 1.081509 CGGATTGGTGCAACGGTTG 60.082 57.895 16.35 16.35 38.12 3.77
3675 3912 1.288752 GGATTGGTGCAACGGTTGG 59.711 57.895 21.37 4.70 38.12 3.77
3676 3913 1.288752 GATTGGTGCAACGGTTGGG 59.711 57.895 21.37 0.00 38.12 4.12
3677 3914 1.456705 ATTGGTGCAACGGTTGGGT 60.457 52.632 21.37 0.00 38.12 4.51
3678 3915 1.045911 ATTGGTGCAACGGTTGGGTT 61.046 50.000 21.37 0.00 38.12 4.11
3680 3917 2.419739 GGTGCAACGGTTGGGTTGT 61.420 57.895 21.37 0.00 46.93 3.32
3681 3918 1.065109 GTGCAACGGTTGGGTTGTC 59.935 57.895 21.37 5.15 46.93 3.18
3682 3919 1.077357 TGCAACGGTTGGGTTGTCT 60.077 52.632 21.37 0.00 46.93 3.41
3683 3920 1.358759 GCAACGGTTGGGTTGTCTG 59.641 57.895 21.37 0.00 46.93 3.51
3684 3921 1.358759 CAACGGTTGGGTTGTCTGC 59.641 57.895 13.03 0.00 41.77 4.26
3685 3922 1.077357 AACGGTTGGGTTGTCTGCA 60.077 52.632 0.00 0.00 0.00 4.41
3686 3923 1.101049 AACGGTTGGGTTGTCTGCAG 61.101 55.000 7.63 7.63 0.00 4.41
3687 3924 1.227823 CGGTTGGGTTGTCTGCAGA 60.228 57.895 13.74 13.74 0.00 4.26
3688 3925 1.230635 CGGTTGGGTTGTCTGCAGAG 61.231 60.000 18.89 0.00 0.00 3.35
3689 3926 0.890996 GGTTGGGTTGTCTGCAGAGG 60.891 60.000 18.89 0.00 0.00 3.69
3690 3927 0.890996 GTTGGGTTGTCTGCAGAGGG 60.891 60.000 18.89 0.00 0.00 4.30
3691 3928 1.352622 TTGGGTTGTCTGCAGAGGGT 61.353 55.000 18.89 0.00 0.00 4.34
3692 3929 1.302832 GGGTTGTCTGCAGAGGGTG 60.303 63.158 18.89 0.00 0.00 4.61
3693 3930 1.451936 GGTTGTCTGCAGAGGGTGT 59.548 57.895 18.89 0.00 0.00 4.16
3694 3931 0.886490 GGTTGTCTGCAGAGGGTGTG 60.886 60.000 18.89 0.00 0.00 3.82
3695 3932 0.106708 GTTGTCTGCAGAGGGTGTGA 59.893 55.000 18.89 0.00 0.00 3.58
3696 3933 1.059098 TTGTCTGCAGAGGGTGTGAT 58.941 50.000 18.89 0.00 0.00 3.06
3697 3934 0.322648 TGTCTGCAGAGGGTGTGATG 59.677 55.000 18.89 0.00 0.00 3.07
3698 3935 0.392193 GTCTGCAGAGGGTGTGATGG 60.392 60.000 18.89 0.00 0.00 3.51
3699 3936 1.077930 CTGCAGAGGGTGTGATGGG 60.078 63.158 8.42 0.00 0.00 4.00
3700 3937 1.845627 CTGCAGAGGGTGTGATGGGT 61.846 60.000 8.42 0.00 0.00 4.51
3701 3938 1.377725 GCAGAGGGTGTGATGGGTG 60.378 63.158 0.00 0.00 0.00 4.61
3702 3939 2.069776 CAGAGGGTGTGATGGGTGT 58.930 57.895 0.00 0.00 0.00 4.16
3703 3940 0.321919 CAGAGGGTGTGATGGGTGTG 60.322 60.000 0.00 0.00 0.00 3.82
3704 3941 1.002134 GAGGGTGTGATGGGTGTGG 60.002 63.158 0.00 0.00 0.00 4.17
3705 3942 2.676471 GGGTGTGATGGGTGTGGC 60.676 66.667 0.00 0.00 0.00 5.01
3706 3943 2.115052 GGTGTGATGGGTGTGGCA 59.885 61.111 0.00 0.00 0.00 4.92
3707 3944 1.530419 GGTGTGATGGGTGTGGCAA 60.530 57.895 0.00 0.00 0.00 4.52
3708 3945 0.899717 GGTGTGATGGGTGTGGCAAT 60.900 55.000 0.00 0.00 0.00 3.56
3709 3946 0.968405 GTGTGATGGGTGTGGCAATT 59.032 50.000 0.00 0.00 0.00 2.32
3710 3947 1.344114 GTGTGATGGGTGTGGCAATTT 59.656 47.619 0.00 0.00 0.00 1.82
3711 3948 1.343789 TGTGATGGGTGTGGCAATTTG 59.656 47.619 0.00 0.00 0.00 2.32
3712 3949 0.975135 TGATGGGTGTGGCAATTTGG 59.025 50.000 0.00 0.00 0.00 3.28
3713 3950 0.391528 GATGGGTGTGGCAATTTGGC 60.392 55.000 15.53 15.53 44.03 4.52
3720 3957 2.182537 GGCAATTTGGCCGCAGAG 59.817 61.111 11.69 0.00 45.40 3.35
3721 3958 2.182537 GCAATTTGGCCGCAGAGG 59.817 61.111 0.00 0.00 44.97 3.69
3722 3959 2.639327 GCAATTTGGCCGCAGAGGT 61.639 57.895 0.00 0.00 43.70 3.85
3723 3960 1.213537 CAATTTGGCCGCAGAGGTG 59.786 57.895 0.00 0.00 43.70 4.00
3735 3972 2.242047 CAGAGGTGCTCTCCATGATG 57.758 55.000 0.00 0.00 43.44 3.07
3736 3973 1.761198 CAGAGGTGCTCTCCATGATGA 59.239 52.381 0.00 0.00 43.44 2.92
3737 3974 1.761784 AGAGGTGCTCTCCATGATGAC 59.238 52.381 0.00 0.00 43.44 3.06
3738 3975 1.483827 GAGGTGCTCTCCATGATGACA 59.516 52.381 0.00 0.00 36.52 3.58
3739 3976 1.485480 AGGTGCTCTCCATGATGACAG 59.515 52.381 0.00 0.00 0.00 3.51
3740 3977 1.474677 GGTGCTCTCCATGATGACAGG 60.475 57.143 0.00 0.00 0.00 4.00
3741 3978 1.483827 GTGCTCTCCATGATGACAGGA 59.516 52.381 0.00 0.00 0.00 3.86
3743 3980 1.540797 GCTCTCCATGATGACAGGAGC 60.541 57.143 0.00 3.85 46.71 4.70
3744 3981 1.761198 CTCTCCATGATGACAGGAGCA 59.239 52.381 0.00 0.00 46.71 4.26
3745 3982 1.761198 TCTCCATGATGACAGGAGCAG 59.239 52.381 0.00 0.00 46.71 4.24
3746 3983 1.485480 CTCCATGATGACAGGAGCAGT 59.515 52.381 0.00 0.00 42.13 4.40
3747 3984 1.483827 TCCATGATGACAGGAGCAGTC 59.516 52.381 0.00 0.00 36.55 3.51
3748 3985 1.568606 CATGATGACAGGAGCAGTCG 58.431 55.000 0.00 0.00 38.83 4.18
3749 3986 0.463204 ATGATGACAGGAGCAGTCGG 59.537 55.000 0.00 0.00 38.83 4.79
3750 3987 0.900182 TGATGACAGGAGCAGTCGGT 60.900 55.000 0.00 0.00 38.83 4.69
3751 3988 0.247736 GATGACAGGAGCAGTCGGTT 59.752 55.000 0.00 0.00 38.83 4.44
3752 3989 0.687354 ATGACAGGAGCAGTCGGTTT 59.313 50.000 0.00 0.00 38.83 3.27
3753 3990 0.033504 TGACAGGAGCAGTCGGTTTC 59.966 55.000 0.00 0.00 38.83 2.78
3754 3991 0.318762 GACAGGAGCAGTCGGTTTCT 59.681 55.000 0.00 0.00 0.00 2.52
3755 3992 0.034059 ACAGGAGCAGTCGGTTTCTG 59.966 55.000 0.00 0.00 36.18 3.02
3761 3998 2.320215 CAGTCGGTTTCTGCTTGCA 58.680 52.632 0.00 0.00 0.00 4.08
3762 3999 0.236711 CAGTCGGTTTCTGCTTGCAG 59.763 55.000 15.74 15.74 0.00 4.41
3763 4000 0.886490 AGTCGGTTTCTGCTTGCAGG 60.886 55.000 20.62 6.19 0.00 4.85
3764 4001 1.600636 TCGGTTTCTGCTTGCAGGG 60.601 57.895 20.62 7.29 0.00 4.45
3765 4002 1.898574 CGGTTTCTGCTTGCAGGGT 60.899 57.895 20.62 0.00 0.00 4.34
3766 4003 1.455383 CGGTTTCTGCTTGCAGGGTT 61.455 55.000 20.62 0.00 0.00 4.11
3767 4004 0.315251 GGTTTCTGCTTGCAGGGTTC 59.685 55.000 20.62 9.99 0.00 3.62
3768 4005 1.322442 GTTTCTGCTTGCAGGGTTCT 58.678 50.000 20.62 0.00 0.00 3.01
3769 4006 1.000938 GTTTCTGCTTGCAGGGTTCTG 60.001 52.381 20.62 0.00 43.64 3.02
3770 4007 0.473755 TTCTGCTTGCAGGGTTCTGA 59.526 50.000 20.62 0.00 43.49 3.27
3771 4008 0.473755 TCTGCTTGCAGGGTTCTGAA 59.526 50.000 20.62 0.00 43.49 3.02
3772 4009 1.074405 TCTGCTTGCAGGGTTCTGAAT 59.926 47.619 20.62 0.00 43.49 2.57
3773 4010 1.891150 CTGCTTGCAGGGTTCTGAATT 59.109 47.619 14.25 0.00 43.49 2.17
3774 4011 3.084039 CTGCTTGCAGGGTTCTGAATTA 58.916 45.455 14.25 0.00 43.49 1.40
3775 4012 3.698040 CTGCTTGCAGGGTTCTGAATTAT 59.302 43.478 14.25 0.00 43.49 1.28
3776 4013 4.088634 TGCTTGCAGGGTTCTGAATTATT 58.911 39.130 0.00 0.00 43.49 1.40
3803 4040 7.585867 TCAGATGATTATAGCTCAACTACGAC 58.414 38.462 0.00 0.00 32.32 4.34
3804 4041 6.521477 CAGATGATTATAGCTCAACTACGACG 59.479 42.308 0.00 0.00 32.32 5.12
3805 4042 5.996669 TGATTATAGCTCAACTACGACGA 57.003 39.130 0.00 0.00 32.32 4.20
3806 4043 5.745514 TGATTATAGCTCAACTACGACGAC 58.254 41.667 0.00 0.00 32.32 4.34
3807 4044 4.542662 TTATAGCTCAACTACGACGACC 57.457 45.455 0.00 0.00 32.32 4.79
3808 4045 1.089920 TAGCTCAACTACGACGACCC 58.910 55.000 0.00 0.00 0.00 4.46
3812 4049 2.079158 CTCAACTACGACGACCCTACA 58.921 52.381 0.00 0.00 0.00 2.74
3816 4053 3.772060 ACTACGACGACCCTACATTTC 57.228 47.619 0.00 0.00 0.00 2.17
3822 4059 1.066143 ACGACCCTACATTTCCTGCAG 60.066 52.381 6.78 6.78 0.00 4.41
3834 4071 1.186200 TCCTGCAGCTACATTCTCGT 58.814 50.000 8.66 0.00 0.00 4.18
3856 4099 6.029607 CGTGTTAATTGACATGAGAATTGGG 58.970 40.000 15.59 0.00 38.53 4.12
3860 4103 5.687166 AATTGACATGAGAATTGGGCATT 57.313 34.783 0.00 0.00 0.00 3.56
3877 4121 3.624326 CATTTCTGCAAACGAACAGGA 57.376 42.857 0.00 0.00 34.57 3.86
3882 4126 0.592637 TGCAAACGAACAGGATGCTG 59.407 50.000 13.34 13.34 42.53 4.41
3931 4266 2.541762 GCTCTGCGCCTGTAAAGATAAG 59.458 50.000 4.18 0.00 0.00 1.73
3947 4282 5.702065 AGATAAGGGGAGGAAGAAGAAAC 57.298 43.478 0.00 0.00 0.00 2.78
3950 4285 2.418669 AGGGGAGGAAGAAGAAACACA 58.581 47.619 0.00 0.00 0.00 3.72
3952 4287 3.204382 AGGGGAGGAAGAAGAAACACAAA 59.796 43.478 0.00 0.00 0.00 2.83
4000 4335 8.709386 AGATGATACAACACAATACTTCAGTC 57.291 34.615 0.00 0.00 0.00 3.51
4014 4349 5.248380 ACTTCAGTCCCTAAGAGCAATTT 57.752 39.130 0.00 0.00 0.00 1.82
4017 4352 7.231467 ACTTCAGTCCCTAAGAGCAATTTTAA 58.769 34.615 0.00 0.00 0.00 1.52
4025 4360 7.065803 TCCCTAAGAGCAATTTTAACAGATTCG 59.934 37.037 0.00 0.00 0.00 3.34
4031 4371 4.260656 GCAATTTTAACAGATTCGTCTGCG 59.739 41.667 5.40 0.00 41.19 5.18
4045 4385 1.141665 CTGCGATCACCATCCGTCA 59.858 57.895 0.00 0.00 0.00 4.35
4053 4393 1.344438 TCACCATCCGTCATATGGAGC 59.656 52.381 9.02 0.00 45.77 4.70
4056 4396 0.319813 CATCCGTCATATGGAGCGCA 60.320 55.000 11.47 0.00 36.59 6.09
4080 4420 0.671796 TGGATACATAGGACGTGGCG 59.328 55.000 0.00 0.00 46.17 5.69
4081 4421 0.038526 GGATACATAGGACGTGGCGG 60.039 60.000 0.00 0.00 0.00 6.13
4083 4423 1.544691 GATACATAGGACGTGGCGGAT 59.455 52.381 0.00 0.00 0.00 4.18
4084 4424 0.671796 TACATAGGACGTGGCGGATG 59.328 55.000 0.00 0.00 0.00 3.51
4085 4425 1.956170 CATAGGACGTGGCGGATGC 60.956 63.158 0.00 0.00 41.71 3.91
4086 4426 2.431454 ATAGGACGTGGCGGATGCA 61.431 57.895 0.00 0.00 45.35 3.96
4088 4428 2.642996 TAGGACGTGGCGGATGCATG 62.643 60.000 2.46 0.00 45.35 4.06
4089 4429 4.241999 GACGTGGCGGATGCATGC 62.242 66.667 11.82 11.82 45.35 4.06
4135 4475 6.323266 TCAGTCGACTAAGATTTAGTGAAGC 58.677 40.000 19.57 0.00 0.00 3.86
4393 4944 7.281774 CCTATATGCCAAGCCTACAATCTATTG 59.718 40.741 1.13 1.13 43.26 1.90
4426 5001 7.224362 CCAACAATCATACAAAGCAAACTCAAA 59.776 33.333 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 6.109359 GCATAAGCTTCTTCAGAAAGAGGTA 58.891 40.000 0.00 0.00 42.36 3.08
16 17 4.940654 GCATAAGCTTCTTCAGAAAGAGGT 59.059 41.667 0.00 0.00 42.36 3.85
18 19 5.410746 TGTGCATAAGCTTCTTCAGAAAGAG 59.589 40.000 0.00 0.00 39.63 2.85
19 20 5.308014 TGTGCATAAGCTTCTTCAGAAAGA 58.692 37.500 0.00 0.00 42.74 2.52
20 21 5.180868 ACTGTGCATAAGCTTCTTCAGAAAG 59.819 40.000 0.00 0.00 42.74 2.62
21 22 5.065914 ACTGTGCATAAGCTTCTTCAGAAA 58.934 37.500 0.00 0.00 42.74 2.52
22 23 4.645535 ACTGTGCATAAGCTTCTTCAGAA 58.354 39.130 0.00 0.00 42.74 3.02
23 24 4.277515 ACTGTGCATAAGCTTCTTCAGA 57.722 40.909 0.00 0.00 42.74 3.27
46 47 8.478877 TCTTGGAGAAGATTAGTCATTTCCTAC 58.521 37.037 2.48 0.00 32.98 3.18
95 96 4.837860 ACTTGGAGGAAATTGCCAACAATA 59.162 37.500 4.92 0.00 45.90 1.90
104 105 4.878397 CCTAGTAGCACTTGGAGGAAATTG 59.122 45.833 9.86 0.00 42.55 2.32
167 168 0.687757 AGAGCCGGCATGACTTCCTA 60.688 55.000 31.54 0.00 0.00 2.94
180 181 2.910199 TCCAGAATCATTTGAGAGCCG 58.090 47.619 0.00 0.00 0.00 5.52
185 186 5.450137 GGCATGTCTTCCAGAATCATTTGAG 60.450 44.000 0.00 0.00 0.00 3.02
193 194 3.726557 TGAAGGCATGTCTTCCAGAAT 57.273 42.857 31.66 0.94 41.67 2.40
194 195 3.507162 TTGAAGGCATGTCTTCCAGAA 57.493 42.857 31.66 19.44 41.67 3.02
239 240 0.882042 AGTCAGTTGTGAAGCGGCAG 60.882 55.000 1.45 0.00 33.27 4.85
242 243 1.261619 GTTCAGTCAGTTGTGAAGCGG 59.738 52.381 0.00 0.00 33.37 5.52
243 244 1.933181 TGTTCAGTCAGTTGTGAAGCG 59.067 47.619 0.00 0.00 33.37 4.68
267 268 3.322254 TCTCCTGTGAAGAAGAAGTGGTC 59.678 47.826 0.00 0.00 0.00 4.02
279 280 8.029522 GCGACTATAATGATTATCTCCTGTGAA 58.970 37.037 0.13 0.00 0.00 3.18
280 281 7.176690 TGCGACTATAATGATTATCTCCTGTGA 59.823 37.037 0.13 0.00 0.00 3.58
281 282 7.315890 TGCGACTATAATGATTATCTCCTGTG 58.684 38.462 0.13 0.00 0.00 3.66
282 283 7.468141 TGCGACTATAATGATTATCTCCTGT 57.532 36.000 0.13 0.00 0.00 4.00
283 284 8.193438 TCATGCGACTATAATGATTATCTCCTG 58.807 37.037 0.13 0.00 0.00 3.86
285 286 7.168972 GCTCATGCGACTATAATGATTATCTCC 59.831 40.741 0.13 0.00 30.31 3.71
287 288 7.550712 TGCTCATGCGACTATAATGATTATCT 58.449 34.615 0.13 0.00 43.34 1.98
288 289 7.761651 TGCTCATGCGACTATAATGATTATC 57.238 36.000 0.13 0.00 43.34 1.75
289 290 8.728337 ATTGCTCATGCGACTATAATGATTAT 57.272 30.769 2.91 2.91 43.34 1.28
291 292 7.444629 AATTGCTCATGCGACTATAATGATT 57.555 32.000 0.00 0.00 43.34 2.57
292 293 7.040892 ACAAATTGCTCATGCGACTATAATGAT 60.041 33.333 0.00 0.00 43.34 2.45
293 294 6.260714 ACAAATTGCTCATGCGACTATAATGA 59.739 34.615 0.00 0.00 43.34 2.57
294 295 6.432936 ACAAATTGCTCATGCGACTATAATG 58.567 36.000 0.00 0.00 43.34 1.90
295 296 6.624352 ACAAATTGCTCATGCGACTATAAT 57.376 33.333 0.00 0.00 43.34 1.28
296 297 6.536941 TGTACAAATTGCTCATGCGACTATAA 59.463 34.615 0.00 0.00 43.34 0.98
297 298 6.019075 GTGTACAAATTGCTCATGCGACTATA 60.019 38.462 0.00 0.00 43.34 1.31
298 299 4.875536 TGTACAAATTGCTCATGCGACTAT 59.124 37.500 0.00 0.00 43.34 2.12
299 300 4.092821 GTGTACAAATTGCTCATGCGACTA 59.907 41.667 0.00 0.00 43.34 2.59
300 301 3.073678 TGTACAAATTGCTCATGCGACT 58.926 40.909 0.00 0.00 43.34 4.18
301 302 3.120199 AGTGTACAAATTGCTCATGCGAC 60.120 43.478 0.00 0.00 43.34 5.19
302 303 3.073678 AGTGTACAAATTGCTCATGCGA 58.926 40.909 0.00 0.00 43.34 5.10
303 304 3.419915 GAGTGTACAAATTGCTCATGCG 58.580 45.455 0.00 0.00 43.34 4.73
304 305 3.419915 CGAGTGTACAAATTGCTCATGC 58.580 45.455 0.00 0.00 40.20 4.06
305 306 3.120234 TGCGAGTGTACAAATTGCTCATG 60.120 43.478 17.93 0.00 0.00 3.07
306 307 3.073678 TGCGAGTGTACAAATTGCTCAT 58.926 40.909 17.93 0.00 0.00 2.90
307 308 2.488952 TGCGAGTGTACAAATTGCTCA 58.511 42.857 17.93 1.83 0.00 4.26
308 309 3.536158 TTGCGAGTGTACAAATTGCTC 57.464 42.857 17.93 10.50 0.00 4.26
309 310 3.501828 TCATTGCGAGTGTACAAATTGCT 59.498 39.130 17.93 3.36 0.00 3.91
310 311 3.820689 TCATTGCGAGTGTACAAATTGC 58.179 40.909 12.62 12.62 0.00 3.56
311 312 5.211454 TGTTCATTGCGAGTGTACAAATTG 58.789 37.500 0.00 0.00 0.00 2.32
312 313 5.431420 TGTTCATTGCGAGTGTACAAATT 57.569 34.783 0.00 0.00 0.00 1.82
313 314 5.393124 CATGTTCATTGCGAGTGTACAAAT 58.607 37.500 0.00 0.00 32.02 2.32
314 315 4.320129 CCATGTTCATTGCGAGTGTACAAA 60.320 41.667 0.00 0.00 32.02 2.83
315 316 3.188254 CCATGTTCATTGCGAGTGTACAA 59.812 43.478 0.00 0.00 32.02 2.41
316 317 2.741517 CCATGTTCATTGCGAGTGTACA 59.258 45.455 0.00 0.00 32.65 2.90
317 318 2.095853 CCCATGTTCATTGCGAGTGTAC 59.904 50.000 0.00 0.00 0.00 2.90
318 319 2.290008 ACCCATGTTCATTGCGAGTGTA 60.290 45.455 0.00 0.00 0.00 2.90
319 320 1.167851 CCCATGTTCATTGCGAGTGT 58.832 50.000 0.00 0.00 0.00 3.55
320 321 1.167851 ACCCATGTTCATTGCGAGTG 58.832 50.000 0.00 0.00 0.00 3.51
321 322 2.027192 ACTACCCATGTTCATTGCGAGT 60.027 45.455 0.00 0.00 0.00 4.18
322 323 2.632377 ACTACCCATGTTCATTGCGAG 58.368 47.619 0.00 0.00 0.00 5.03
323 324 2.779755 ACTACCCATGTTCATTGCGA 57.220 45.000 0.00 0.00 0.00 5.10
324 325 5.931724 TCATATACTACCCATGTTCATTGCG 59.068 40.000 0.00 0.00 0.00 4.85
325 326 7.228507 TGTTCATATACTACCCATGTTCATTGC 59.771 37.037 0.00 0.00 0.00 3.56
326 327 8.675705 TGTTCATATACTACCCATGTTCATTG 57.324 34.615 0.00 0.00 0.00 2.82
327 328 9.288576 CATGTTCATATACTACCCATGTTCATT 57.711 33.333 0.00 0.00 0.00 2.57
328 329 7.884877 CCATGTTCATATACTACCCATGTTCAT 59.115 37.037 0.00 0.00 0.00 2.57
329 330 7.223584 CCATGTTCATATACTACCCATGTTCA 58.776 38.462 0.00 0.00 0.00 3.18
330 331 6.655003 CCCATGTTCATATACTACCCATGTTC 59.345 42.308 0.00 0.00 0.00 3.18
331 332 6.102615 ACCCATGTTCATATACTACCCATGTT 59.897 38.462 0.00 0.00 0.00 2.71
332 333 5.610982 ACCCATGTTCATATACTACCCATGT 59.389 40.000 0.00 0.00 0.00 3.21
333 334 5.939883 CACCCATGTTCATATACTACCCATG 59.060 44.000 0.00 0.00 0.00 3.66
334 335 5.610982 ACACCCATGTTCATATACTACCCAT 59.389 40.000 0.00 0.00 34.46 4.00
335 336 4.972568 ACACCCATGTTCATATACTACCCA 59.027 41.667 0.00 0.00 34.46 4.51
336 337 5.562298 ACACCCATGTTCATATACTACCC 57.438 43.478 0.00 0.00 34.46 3.69
344 345 9.567776 CAAGGTATAATTACACCCATGTTCATA 57.432 33.333 9.36 0.00 40.48 2.15
345 346 7.505585 CCAAGGTATAATTACACCCATGTTCAT 59.494 37.037 9.36 0.00 40.48 2.57
346 347 6.831353 CCAAGGTATAATTACACCCATGTTCA 59.169 38.462 9.36 0.00 40.48 3.18
347 348 6.238925 GCCAAGGTATAATTACACCCATGTTC 60.239 42.308 9.36 1.08 40.48 3.18
348 349 5.596772 GCCAAGGTATAATTACACCCATGTT 59.403 40.000 9.36 0.00 40.48 2.71
349 350 5.137551 GCCAAGGTATAATTACACCCATGT 58.862 41.667 9.36 0.00 43.30 3.21
350 351 5.136828 TGCCAAGGTATAATTACACCCATG 58.863 41.667 9.36 8.94 35.25 3.66
351 352 5.103686 ACTGCCAAGGTATAATTACACCCAT 60.104 40.000 9.36 0.00 35.25 4.00
352 353 4.228666 ACTGCCAAGGTATAATTACACCCA 59.771 41.667 9.36 0.00 35.25 4.51
353 354 4.788679 ACTGCCAAGGTATAATTACACCC 58.211 43.478 9.36 0.00 35.25 4.61
354 355 7.277396 TCTTACTGCCAAGGTATAATTACACC 58.723 38.462 4.65 4.65 34.86 4.16
355 356 8.904099 ATCTTACTGCCAAGGTATAATTACAC 57.096 34.615 0.00 0.00 0.00 2.90
364 365 8.429641 CCTAGAAAATATCTTACTGCCAAGGTA 58.570 37.037 0.00 0.00 39.71 3.08
365 366 7.092399 ACCTAGAAAATATCTTACTGCCAAGGT 60.092 37.037 0.00 0.00 39.71 3.50
366 367 7.227512 CACCTAGAAAATATCTTACTGCCAAGG 59.772 40.741 0.00 0.00 39.71 3.61
367 368 7.987458 TCACCTAGAAAATATCTTACTGCCAAG 59.013 37.037 0.00 0.00 39.71 3.61
368 369 7.857456 TCACCTAGAAAATATCTTACTGCCAA 58.143 34.615 0.00 0.00 39.71 4.52
369 370 7.432148 TCACCTAGAAAATATCTTACTGCCA 57.568 36.000 0.00 0.00 39.71 4.92
370 371 8.732746 TTTCACCTAGAAAATATCTTACTGCC 57.267 34.615 0.00 0.00 43.00 4.85
453 454 9.401058 CAATCTCAAAATAGAGAACCTAATGGT 57.599 33.333 0.00 0.00 46.81 3.55
454 455 8.348507 GCAATCTCAAAATAGAGAACCTAATGG 58.651 37.037 0.00 0.00 46.81 3.16
455 456 8.348507 GGCAATCTCAAAATAGAGAACCTAATG 58.651 37.037 0.00 0.00 46.81 1.90
456 457 7.503902 GGGCAATCTCAAAATAGAGAACCTAAT 59.496 37.037 0.00 0.00 46.81 1.73
457 458 6.828785 GGGCAATCTCAAAATAGAGAACCTAA 59.171 38.462 0.00 0.00 46.81 2.69
458 459 6.357367 GGGCAATCTCAAAATAGAGAACCTA 58.643 40.000 0.00 0.00 46.81 3.08
459 460 5.196695 GGGCAATCTCAAAATAGAGAACCT 58.803 41.667 0.00 0.00 46.81 3.50
460 461 4.339530 GGGGCAATCTCAAAATAGAGAACC 59.660 45.833 0.00 0.00 46.81 3.62
461 462 4.949856 TGGGGCAATCTCAAAATAGAGAAC 59.050 41.667 0.00 0.00 46.81 3.01
462 463 5.191727 TGGGGCAATCTCAAAATAGAGAA 57.808 39.130 0.00 0.00 46.81 2.87
464 465 4.337555 CACTGGGGCAATCTCAAAATAGAG 59.662 45.833 0.00 0.00 36.97 2.43
465 466 4.018506 TCACTGGGGCAATCTCAAAATAGA 60.019 41.667 0.00 0.00 0.00 1.98
466 467 4.096984 GTCACTGGGGCAATCTCAAAATAG 59.903 45.833 0.00 0.00 0.00 1.73
467 468 4.016444 GTCACTGGGGCAATCTCAAAATA 58.984 43.478 0.00 0.00 0.00 1.40
468 469 2.827921 GTCACTGGGGCAATCTCAAAAT 59.172 45.455 0.00 0.00 0.00 1.82
469 470 2.158475 AGTCACTGGGGCAATCTCAAAA 60.158 45.455 0.00 0.00 0.00 2.44
470 471 1.425066 AGTCACTGGGGCAATCTCAAA 59.575 47.619 0.00 0.00 0.00 2.69
471 472 1.003580 GAGTCACTGGGGCAATCTCAA 59.996 52.381 0.00 0.00 0.00 3.02
472 473 0.615331 GAGTCACTGGGGCAATCTCA 59.385 55.000 0.00 0.00 0.00 3.27
473 474 0.615331 TGAGTCACTGGGGCAATCTC 59.385 55.000 0.00 0.00 0.00 2.75
474 475 0.326264 GTGAGTCACTGGGGCAATCT 59.674 55.000 16.26 0.00 0.00 2.40
475 476 0.036732 TGTGAGTCACTGGGGCAATC 59.963 55.000 23.29 0.00 35.11 2.67
476 477 0.700564 ATGTGAGTCACTGGGGCAAT 59.299 50.000 23.29 4.61 35.11 3.56
477 478 0.478072 AATGTGAGTCACTGGGGCAA 59.522 50.000 23.29 2.23 35.11 4.52
478 479 1.278985 CTAATGTGAGTCACTGGGGCA 59.721 52.381 23.29 3.06 35.11 5.36
479 480 1.555075 TCTAATGTGAGTCACTGGGGC 59.445 52.381 23.29 0.00 35.11 5.80
480 481 2.834549 AGTCTAATGTGAGTCACTGGGG 59.165 50.000 23.29 11.53 35.11 4.96
481 482 5.506483 CGATAGTCTAATGTGAGTCACTGGG 60.506 48.000 23.29 11.21 35.11 4.45
482 483 5.297029 TCGATAGTCTAATGTGAGTCACTGG 59.703 44.000 23.29 7.15 34.34 4.00
483 484 6.195868 GTCGATAGTCTAATGTGAGTCACTG 58.804 44.000 23.29 11.26 34.34 3.66
484 485 5.297278 GGTCGATAGTCTAATGTGAGTCACT 59.703 44.000 23.29 7.51 34.34 3.41
485 486 5.505985 GGGTCGATAGTCTAATGTGAGTCAC 60.506 48.000 16.68 16.68 33.99 3.67
486 487 4.579340 GGGTCGATAGTCTAATGTGAGTCA 59.421 45.833 0.00 0.00 37.40 3.41
487 488 4.822896 AGGGTCGATAGTCTAATGTGAGTC 59.177 45.833 0.00 0.00 37.40 3.36
488 489 4.580995 CAGGGTCGATAGTCTAATGTGAGT 59.419 45.833 0.00 0.00 37.40 3.41
489 490 4.557695 GCAGGGTCGATAGTCTAATGTGAG 60.558 50.000 0.00 0.00 37.40 3.51
490 491 3.318275 GCAGGGTCGATAGTCTAATGTGA 59.682 47.826 0.00 0.00 37.40 3.58
491 492 3.553096 GGCAGGGTCGATAGTCTAATGTG 60.553 52.174 0.00 0.00 37.40 3.21
492 493 2.628657 GGCAGGGTCGATAGTCTAATGT 59.371 50.000 0.00 0.00 37.40 2.71
493 494 2.628178 TGGCAGGGTCGATAGTCTAATG 59.372 50.000 0.00 0.00 37.40 1.90
494 495 2.958818 TGGCAGGGTCGATAGTCTAAT 58.041 47.619 0.00 0.00 37.40 1.73
495 496 2.447408 TGGCAGGGTCGATAGTCTAA 57.553 50.000 0.00 0.00 37.40 2.10
496 497 2.447408 TTGGCAGGGTCGATAGTCTA 57.553 50.000 0.00 0.00 37.40 2.59
497 498 1.568504 TTTGGCAGGGTCGATAGTCT 58.431 50.000 0.00 0.00 37.40 3.24
498 499 2.007608 GTTTTGGCAGGGTCGATAGTC 58.992 52.381 0.00 0.00 37.40 2.59
499 500 1.674817 CGTTTTGGCAGGGTCGATAGT 60.675 52.381 0.00 0.00 37.40 2.12
500 501 1.006832 CGTTTTGGCAGGGTCGATAG 58.993 55.000 0.00 0.00 0.00 2.08
501 502 0.609151 TCGTTTTGGCAGGGTCGATA 59.391 50.000 0.00 0.00 0.00 2.92
502 503 0.250553 TTCGTTTTGGCAGGGTCGAT 60.251 50.000 0.00 0.00 0.00 3.59
503 504 0.464013 TTTCGTTTTGGCAGGGTCGA 60.464 50.000 0.00 0.00 0.00 4.20
504 505 0.040425 CTTTCGTTTTGGCAGGGTCG 60.040 55.000 0.00 0.00 0.00 4.79
505 506 1.314730 TCTTTCGTTTTGGCAGGGTC 58.685 50.000 0.00 0.00 0.00 4.46
506 507 1.995376 ATCTTTCGTTTTGGCAGGGT 58.005 45.000 0.00 0.00 0.00 4.34
507 508 3.081804 AGTATCTTTCGTTTTGGCAGGG 58.918 45.455 0.00 0.00 0.00 4.45
508 509 5.873179 TTAGTATCTTTCGTTTTGGCAGG 57.127 39.130 0.00 0.00 0.00 4.85
509 510 8.742554 AAATTTAGTATCTTTCGTTTTGGCAG 57.257 30.769 0.00 0.00 0.00 4.85
510 511 9.535878 AAAAATTTAGTATCTTTCGTTTTGGCA 57.464 25.926 0.00 0.00 0.00 4.92
578 579 9.847224 TCTAAAGGAGAGATTAGTTGTTTTGTT 57.153 29.630 0.00 0.00 32.27 2.83
594 595 8.686334 GCCAAAATCAATACAATCTAAAGGAGA 58.314 33.333 0.00 0.00 39.01 3.71
595 596 8.689972 AGCCAAAATCAATACAATCTAAAGGAG 58.310 33.333 0.00 0.00 0.00 3.69
596 597 8.593945 AGCCAAAATCAATACAATCTAAAGGA 57.406 30.769 0.00 0.00 0.00 3.36
597 598 9.090692 CAAGCCAAAATCAATACAATCTAAAGG 57.909 33.333 0.00 0.00 0.00 3.11
598 599 9.643693 ACAAGCCAAAATCAATACAATCTAAAG 57.356 29.630 0.00 0.00 0.00 1.85
599 600 9.421806 CACAAGCCAAAATCAATACAATCTAAA 57.578 29.630 0.00 0.00 0.00 1.85
600 601 8.034215 CCACAAGCCAAAATCAATACAATCTAA 58.966 33.333 0.00 0.00 0.00 2.10
601 602 7.363705 CCCACAAGCCAAAATCAATACAATCTA 60.364 37.037 0.00 0.00 0.00 1.98
602 603 6.400568 CCACAAGCCAAAATCAATACAATCT 58.599 36.000 0.00 0.00 0.00 2.40
603 604 5.581874 CCCACAAGCCAAAATCAATACAATC 59.418 40.000 0.00 0.00 0.00 2.67
604 605 5.490159 CCCACAAGCCAAAATCAATACAAT 58.510 37.500 0.00 0.00 0.00 2.71
605 606 4.802248 GCCCACAAGCCAAAATCAATACAA 60.802 41.667 0.00 0.00 0.00 2.41
606 607 3.306641 GCCCACAAGCCAAAATCAATACA 60.307 43.478 0.00 0.00 0.00 2.29
607 608 3.055891 AGCCCACAAGCCAAAATCAATAC 60.056 43.478 0.00 0.00 0.00 1.89
608 609 3.055963 CAGCCCACAAGCCAAAATCAATA 60.056 43.478 0.00 0.00 0.00 1.90
609 610 1.980036 AGCCCACAAGCCAAAATCAAT 59.020 42.857 0.00 0.00 0.00 2.57
610 611 1.070445 CAGCCCACAAGCCAAAATCAA 59.930 47.619 0.00 0.00 0.00 2.57
611 612 0.680618 CAGCCCACAAGCCAAAATCA 59.319 50.000 0.00 0.00 0.00 2.57
612 613 0.671472 GCAGCCCACAAGCCAAAATC 60.671 55.000 0.00 0.00 0.00 2.17
613 614 1.372307 GCAGCCCACAAGCCAAAAT 59.628 52.632 0.00 0.00 0.00 1.82
614 615 1.409251 ATGCAGCCCACAAGCCAAAA 61.409 50.000 0.00 0.00 0.00 2.44
615 616 1.409251 AATGCAGCCCACAAGCCAAA 61.409 50.000 0.00 0.00 0.00 3.28
616 617 1.837947 AATGCAGCCCACAAGCCAA 60.838 52.632 0.00 0.00 0.00 4.52
617 618 2.203669 AATGCAGCCCACAAGCCA 60.204 55.556 0.00 0.00 0.00 4.75
618 619 2.221906 CTCAATGCAGCCCACAAGCC 62.222 60.000 0.00 0.00 0.00 4.35
619 620 1.214589 CTCAATGCAGCCCACAAGC 59.785 57.895 0.00 0.00 0.00 4.01
620 621 1.214589 GCTCAATGCAGCCCACAAG 59.785 57.895 0.00 0.00 42.31 3.16
621 622 1.228644 AGCTCAATGCAGCCCACAA 60.229 52.632 0.00 0.00 45.94 3.33
622 623 1.676635 GAGCTCAATGCAGCCCACA 60.677 57.895 9.40 0.00 45.94 4.17
623 624 0.964358 AAGAGCTCAATGCAGCCCAC 60.964 55.000 17.77 0.00 45.94 4.61
624 625 0.251474 AAAGAGCTCAATGCAGCCCA 60.251 50.000 17.77 0.00 45.94 5.36
625 626 0.893447 AAAAGAGCTCAATGCAGCCC 59.107 50.000 17.77 0.00 45.94 5.19
626 627 5.067023 AGTTATAAAAGAGCTCAATGCAGCC 59.933 40.000 17.77 0.00 45.94 4.85
627 628 5.970023 CAGTTATAAAAGAGCTCAATGCAGC 59.030 40.000 17.77 0.00 45.94 5.25
628 629 7.065563 AGACAGTTATAAAAGAGCTCAATGCAG 59.934 37.037 17.77 0.00 45.94 4.41
629 630 6.881065 AGACAGTTATAAAAGAGCTCAATGCA 59.119 34.615 17.77 0.00 45.94 3.96
630 631 7.313951 AGACAGTTATAAAAGAGCTCAATGC 57.686 36.000 17.77 0.00 43.29 3.56
645 646 9.623000 AAGTAGGTGTGTTAAAAAGACAGTTAT 57.377 29.630 0.00 0.00 35.13 1.89
646 647 8.885722 CAAGTAGGTGTGTTAAAAAGACAGTTA 58.114 33.333 0.00 0.00 35.13 2.24
647 648 7.392393 ACAAGTAGGTGTGTTAAAAAGACAGTT 59.608 33.333 0.00 0.00 35.13 3.16
648 649 6.882678 ACAAGTAGGTGTGTTAAAAAGACAGT 59.117 34.615 0.00 0.00 35.13 3.55
649 650 7.316544 ACAAGTAGGTGTGTTAAAAAGACAG 57.683 36.000 0.00 0.00 35.13 3.51
650 651 7.690952 AACAAGTAGGTGTGTTAAAAAGACA 57.309 32.000 0.00 0.00 36.22 3.41
651 652 8.238631 TGAAACAAGTAGGTGTGTTAAAAAGAC 58.761 33.333 0.00 0.00 36.97 3.01
652 653 8.338072 TGAAACAAGTAGGTGTGTTAAAAAGA 57.662 30.769 0.00 0.00 36.97 2.52
653 654 8.455682 TCTGAAACAAGTAGGTGTGTTAAAAAG 58.544 33.333 0.00 0.00 36.97 2.27
654 655 8.338072 TCTGAAACAAGTAGGTGTGTTAAAAA 57.662 30.769 0.00 0.00 36.97 1.94
655 656 7.925043 TCTGAAACAAGTAGGTGTGTTAAAA 57.075 32.000 0.00 0.00 36.97 1.52
656 657 7.925043 TTCTGAAACAAGTAGGTGTGTTAAA 57.075 32.000 0.00 0.00 36.97 1.52
657 658 7.066525 CCTTTCTGAAACAAGTAGGTGTGTTAA 59.933 37.037 0.00 0.00 36.97 2.01
658 659 6.540914 CCTTTCTGAAACAAGTAGGTGTGTTA 59.459 38.462 0.00 0.00 36.97 2.41
659 660 5.357032 CCTTTCTGAAACAAGTAGGTGTGTT 59.643 40.000 0.00 0.00 39.63 3.32
660 661 4.881850 CCTTTCTGAAACAAGTAGGTGTGT 59.118 41.667 0.00 0.00 0.00 3.72
661 662 5.123227 TCCTTTCTGAAACAAGTAGGTGTG 58.877 41.667 0.00 0.00 0.00 3.82
662 663 5.367945 TCCTTTCTGAAACAAGTAGGTGT 57.632 39.130 0.00 0.00 0.00 4.16
663 664 6.884280 AATCCTTTCTGAAACAAGTAGGTG 57.116 37.500 0.00 0.00 0.00 4.00
664 665 8.990163 TTTAATCCTTTCTGAAACAAGTAGGT 57.010 30.769 0.00 0.00 0.00 3.08
706 707 9.178758 GAGGATCCACAAGTTTTATTAAGACAT 57.821 33.333 15.82 0.00 0.00 3.06
707 708 8.383175 AGAGGATCCACAAGTTTTATTAAGACA 58.617 33.333 15.82 0.00 33.66 3.41
708 709 8.669243 CAGAGGATCCACAAGTTTTATTAAGAC 58.331 37.037 15.82 0.00 33.66 3.01
709 710 7.336931 GCAGAGGATCCACAAGTTTTATTAAGA 59.663 37.037 15.82 0.00 33.66 2.10
710 711 7.415653 GGCAGAGGATCCACAAGTTTTATTAAG 60.416 40.741 15.82 0.00 33.66 1.85
711 712 6.377146 GGCAGAGGATCCACAAGTTTTATTAA 59.623 38.462 15.82 0.00 33.66 1.40
712 713 5.885912 GGCAGAGGATCCACAAGTTTTATTA 59.114 40.000 15.82 0.00 33.66 0.98
713 714 4.706962 GGCAGAGGATCCACAAGTTTTATT 59.293 41.667 15.82 0.00 33.66 1.40
714 715 4.273318 GGCAGAGGATCCACAAGTTTTAT 58.727 43.478 15.82 0.00 33.66 1.40
715 716 3.561313 GGGCAGAGGATCCACAAGTTTTA 60.561 47.826 15.82 0.00 33.66 1.52
716 717 2.519013 GGCAGAGGATCCACAAGTTTT 58.481 47.619 15.82 0.00 33.66 2.43
717 718 1.272147 GGGCAGAGGATCCACAAGTTT 60.272 52.381 15.82 0.00 33.66 2.66
718 719 0.329596 GGGCAGAGGATCCACAAGTT 59.670 55.000 15.82 0.00 33.66 2.66
719 720 0.842030 TGGGCAGAGGATCCACAAGT 60.842 55.000 15.82 0.00 33.66 3.16
720 721 0.329261 TTGGGCAGAGGATCCACAAG 59.671 55.000 15.82 5.91 33.66 3.16
721 722 1.002069 ATTGGGCAGAGGATCCACAA 58.998 50.000 15.82 9.17 33.66 3.33
722 723 1.002069 AATTGGGCAGAGGATCCACA 58.998 50.000 15.82 0.00 33.66 4.17
723 724 2.149973 AAATTGGGCAGAGGATCCAC 57.850 50.000 15.82 8.01 33.66 4.02
724 725 2.925966 AAAATTGGGCAGAGGATCCA 57.074 45.000 15.82 0.00 33.66 3.41
752 753 9.171877 TGAACAGGCACTTTCAAATTTAAAAAT 57.828 25.926 0.00 0.00 34.60 1.82
753 754 8.553459 TGAACAGGCACTTTCAAATTTAAAAA 57.447 26.923 0.00 0.00 34.60 1.94
754 755 8.729805 ATGAACAGGCACTTTCAAATTTAAAA 57.270 26.923 0.00 0.00 38.32 1.52
755 756 8.729805 AATGAACAGGCACTTTCAAATTTAAA 57.270 26.923 0.00 0.00 38.32 1.52
756 757 8.729805 AAATGAACAGGCACTTTCAAATTTAA 57.270 26.923 0.00 0.00 38.32 1.52
757 758 7.440856 GGAAATGAACAGGCACTTTCAAATTTA 59.559 33.333 0.00 0.00 38.32 1.40
758 759 6.260714 GGAAATGAACAGGCACTTTCAAATTT 59.739 34.615 0.42 0.00 38.32 1.82
759 760 5.759763 GGAAATGAACAGGCACTTTCAAATT 59.240 36.000 0.42 0.27 38.32 1.82
760 761 5.070847 AGGAAATGAACAGGCACTTTCAAAT 59.929 36.000 0.42 0.00 38.32 2.32
761 762 4.405358 AGGAAATGAACAGGCACTTTCAAA 59.595 37.500 0.42 0.00 38.32 2.69
762 763 3.960102 AGGAAATGAACAGGCACTTTCAA 59.040 39.130 0.42 0.00 38.32 2.69
763 764 3.318839 CAGGAAATGAACAGGCACTTTCA 59.681 43.478 0.00 0.00 38.82 2.69
764 765 3.858503 GCAGGAAATGAACAGGCACTTTC 60.859 47.826 0.00 0.00 34.60 2.62
765 766 2.036346 GCAGGAAATGAACAGGCACTTT 59.964 45.455 0.00 0.00 34.60 2.66
766 767 1.615392 GCAGGAAATGAACAGGCACTT 59.385 47.619 0.00 0.00 34.60 3.16
767 768 1.251251 GCAGGAAATGAACAGGCACT 58.749 50.000 0.00 0.00 43.88 4.40
768 769 0.109597 CGCAGGAAATGAACAGGCAC 60.110 55.000 0.00 0.00 0.00 5.01
769 770 1.865788 GCGCAGGAAATGAACAGGCA 61.866 55.000 0.30 0.00 0.00 4.75
770 771 1.153958 GCGCAGGAAATGAACAGGC 60.154 57.895 0.30 0.00 0.00 4.85
771 772 1.135315 CGCGCAGGAAATGAACAGG 59.865 57.895 8.75 0.00 0.00 4.00
772 773 0.238289 AACGCGCAGGAAATGAACAG 59.762 50.000 5.73 0.00 0.00 3.16
773 774 0.665835 AAACGCGCAGGAAATGAACA 59.334 45.000 5.73 0.00 0.00 3.18
774 775 1.052287 CAAACGCGCAGGAAATGAAC 58.948 50.000 5.73 0.00 0.00 3.18
775 776 0.947960 TCAAACGCGCAGGAAATGAA 59.052 45.000 5.73 0.00 0.00 2.57
776 777 0.947960 TTCAAACGCGCAGGAAATGA 59.052 45.000 5.73 0.00 0.00 2.57
777 778 1.451651 GTTTCAAACGCGCAGGAAATG 59.548 47.619 18.36 0.00 32.52 2.32
778 779 1.601914 GGTTTCAAACGCGCAGGAAAT 60.602 47.619 18.36 0.00 32.52 2.17
779 780 0.248702 GGTTTCAAACGCGCAGGAAA 60.249 50.000 5.73 10.85 0.00 3.13
789 790 2.661594 GAGTCAATGCCGGTTTCAAAC 58.338 47.619 1.90 0.00 0.00 2.93
801 802 4.423732 CCTTAAAAATGCCCGAGTCAATG 58.576 43.478 0.00 0.00 0.00 2.82
802 803 3.119137 GCCTTAAAAATGCCCGAGTCAAT 60.119 43.478 0.00 0.00 0.00 2.57
809 810 3.038788 AGTTTGCCTTAAAAATGCCCG 57.961 42.857 0.00 0.00 0.00 6.13
814 815 4.429854 TGCCCAAGTTTGCCTTAAAAAT 57.570 36.364 0.00 0.00 0.00 1.82
840 841 8.801882 TTCTTTCTTTCAAACAGACCTCTAAA 57.198 30.769 0.00 0.00 0.00 1.85
841 842 8.801882 TTTCTTTCTTTCAAACAGACCTCTAA 57.198 30.769 0.00 0.00 0.00 2.10
842 843 8.265055 TCTTTCTTTCTTTCAAACAGACCTCTA 58.735 33.333 0.00 0.00 0.00 2.43
843 844 7.112779 TCTTTCTTTCTTTCAAACAGACCTCT 58.887 34.615 0.00 0.00 0.00 3.69
874 875 2.031870 GACAGTTCTGCCCTGGTTTTT 58.968 47.619 0.00 0.00 34.16 1.94
875 876 1.692411 GACAGTTCTGCCCTGGTTTT 58.308 50.000 0.00 0.00 34.16 2.43
876 877 0.178990 GGACAGTTCTGCCCTGGTTT 60.179 55.000 0.00 0.00 34.16 3.27
877 878 1.352622 TGGACAGTTCTGCCCTGGTT 61.353 55.000 6.70 0.00 34.16 3.67
878 879 1.770110 TGGACAGTTCTGCCCTGGT 60.770 57.895 6.70 0.00 34.16 4.00
879 880 1.002868 CTGGACAGTTCTGCCCTGG 60.003 63.158 6.70 0.00 34.16 4.45
912 913 2.767960 GGGGGTTCGAGTGAGGTAATTA 59.232 50.000 0.00 0.00 0.00 1.40
931 932 2.762535 ATGTAAAGGACAGTGACGGG 57.237 50.000 0.00 0.00 42.79 5.28
943 944 6.435428 GGGTAATGTTGCGGATAATGTAAAG 58.565 40.000 0.00 0.00 0.00 1.85
947 948 2.875933 CGGGTAATGTTGCGGATAATGT 59.124 45.455 0.00 0.00 0.00 2.71
992 998 3.197790 CCTGCGCCATTGGAGTCG 61.198 66.667 6.95 1.57 0.00 4.18
993 999 3.512516 GCCTGCGCCATTGGAGTC 61.513 66.667 6.95 0.41 0.00 3.36
1038 1044 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
1039 1045 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
1040 1046 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
1041 1047 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
1042 1048 1.701031 TAGTGGTGGTGGTGGTGGTG 61.701 60.000 0.00 0.00 0.00 4.17
1043 1049 1.384783 TAGTGGTGGTGGTGGTGGT 60.385 57.895 0.00 0.00 0.00 4.16
1073 1079 4.154347 GCGAGGGTCTCTGGCTGG 62.154 72.222 0.00 0.00 42.84 4.85
1079 1085 2.752238 CTCCACGCGAGGGTCTCT 60.752 66.667 22.65 0.00 34.67 3.10
1092 1098 3.138798 GACGGCGAGTAGGCTCCA 61.139 66.667 16.62 0.00 44.22 3.86
1110 1116 1.379309 GGACTCGGCTCTGAGGAGT 60.379 63.158 14.03 14.03 43.32 3.85
1183 1189 3.074999 GCAGCAGGGAGACGAGGAG 62.075 68.421 0.00 0.00 0.00 3.69
2133 2139 2.227089 ATCCGTCGAACACCCTCTGC 62.227 60.000 0.00 0.00 0.00 4.26
2432 2438 2.093973 TCGGAGAAGAAGGTGAATGAGC 60.094 50.000 0.00 0.00 0.00 4.26
2601 2607 1.226323 GTACATGTCGACGAGCGCT 60.226 57.895 11.27 11.27 40.61 5.92
2850 2856 2.420129 GGCCTCCATGTTGTCGAAGTAT 60.420 50.000 0.00 0.00 0.00 2.12
3134 3368 2.582498 CCGCCTCGTCGAACATCC 60.582 66.667 0.00 0.00 0.00 3.51
3471 3708 1.538512 CTGCACATCCTGGTGTTCTTG 59.461 52.381 0.00 0.00 40.89 3.02
3546 3783 0.888619 ACCGAGAAGCATCACGAAGA 59.111 50.000 10.33 0.00 41.41 2.87
3549 3786 0.108804 GGAACCGAGAAGCATCACGA 60.109 55.000 10.33 0.00 41.41 4.35
3616 3853 2.105128 CATCTGGTCGCCCGTCTC 59.895 66.667 0.00 0.00 0.00 3.36
3617 3854 3.461773 CCATCTGGTCGCCCGTCT 61.462 66.667 0.00 0.00 0.00 4.18
3618 3855 3.458163 TCCATCTGGTCGCCCGTC 61.458 66.667 0.00 0.00 36.34 4.79
3619 3856 3.771160 GTCCATCTGGTCGCCCGT 61.771 66.667 0.00 0.00 36.34 5.28
3620 3857 3.432051 GAGTCCATCTGGTCGCCCG 62.432 68.421 0.00 0.00 36.34 6.13
3622 3859 2.105128 CGAGTCCATCTGGTCGCC 59.895 66.667 0.00 0.00 36.34 5.54
3623 3860 2.583593 GCGAGTCCATCTGGTCGC 60.584 66.667 15.57 15.57 47.00 5.19
3625 3862 1.064946 CGAGCGAGTCCATCTGGTC 59.935 63.158 0.00 0.00 36.34 4.02
3626 3863 3.069980 GCGAGCGAGTCCATCTGGT 62.070 63.158 0.00 0.00 36.34 4.00
3627 3864 2.279120 GCGAGCGAGTCCATCTGG 60.279 66.667 0.00 0.00 0.00 3.86
3628 3865 2.279120 GGCGAGCGAGTCCATCTG 60.279 66.667 0.00 0.00 0.00 2.90
3629 3866 3.893763 CGGCGAGCGAGTCCATCT 61.894 66.667 0.00 0.00 0.00 2.90
3630 3867 4.933064 CCGGCGAGCGAGTCCATC 62.933 72.222 9.30 0.00 0.00 3.51
3633 3870 4.549516 GTACCGGCGAGCGAGTCC 62.550 72.222 9.30 0.00 0.00 3.85
3635 3872 3.812019 CAGTACCGGCGAGCGAGT 61.812 66.667 9.30 0.00 0.00 4.18
3636 3873 4.554363 CCAGTACCGGCGAGCGAG 62.554 72.222 9.30 0.00 0.00 5.03
3644 3881 4.524318 AATCCGCGCCAGTACCGG 62.524 66.667 0.00 0.00 43.21 5.28
3645 3882 3.261951 CAATCCGCGCCAGTACCG 61.262 66.667 0.00 0.00 0.00 4.02
3646 3883 2.895372 CCAATCCGCGCCAGTACC 60.895 66.667 0.00 0.00 0.00 3.34
3647 3884 2.125269 ACCAATCCGCGCCAGTAC 60.125 61.111 0.00 0.00 0.00 2.73
3648 3885 2.125310 CACCAATCCGCGCCAGTA 60.125 61.111 0.00 0.00 0.00 2.74
3652 3889 4.776647 GTTGCACCAATCCGCGCC 62.777 66.667 0.00 0.00 0.00 6.53
3654 3891 4.459331 CCGTTGCACCAATCCGCG 62.459 66.667 0.00 0.00 0.00 6.46
3655 3892 2.914908 AACCGTTGCACCAATCCGC 61.915 57.895 0.00 0.00 0.00 5.54
3656 3893 1.081509 CAACCGTTGCACCAATCCG 60.082 57.895 0.00 0.00 0.00 4.18
3657 3894 1.288752 CCAACCGTTGCACCAATCC 59.711 57.895 5.68 0.00 0.00 3.01
3658 3895 1.288752 CCCAACCGTTGCACCAATC 59.711 57.895 5.68 0.00 0.00 2.67
3659 3896 1.045911 AACCCAACCGTTGCACCAAT 61.046 50.000 5.68 0.00 0.00 3.16
3660 3897 1.682684 AACCCAACCGTTGCACCAA 60.683 52.632 5.68 0.00 0.00 3.67
3661 3898 2.043852 AACCCAACCGTTGCACCA 60.044 55.556 5.68 0.00 0.00 4.17
3662 3899 2.344521 GACAACCCAACCGTTGCACC 62.345 60.000 5.68 0.00 45.75 5.01
3663 3900 1.065109 GACAACCCAACCGTTGCAC 59.935 57.895 5.68 0.00 45.75 4.57
3664 3901 1.077357 AGACAACCCAACCGTTGCA 60.077 52.632 5.68 0.00 45.75 4.08
3665 3902 1.358759 CAGACAACCCAACCGTTGC 59.641 57.895 5.68 0.00 45.75 4.17
3666 3903 1.358759 GCAGACAACCCAACCGTTG 59.641 57.895 4.12 4.12 46.94 4.10
3667 3904 1.077357 TGCAGACAACCCAACCGTT 60.077 52.632 0.00 0.00 0.00 4.44
3668 3905 1.525995 CTGCAGACAACCCAACCGT 60.526 57.895 8.42 0.00 0.00 4.83
3669 3906 1.227823 TCTGCAGACAACCCAACCG 60.228 57.895 13.74 0.00 0.00 4.44
3670 3907 0.890996 CCTCTGCAGACAACCCAACC 60.891 60.000 13.74 0.00 0.00 3.77
3671 3908 0.890996 CCCTCTGCAGACAACCCAAC 60.891 60.000 13.74 0.00 0.00 3.77
3672 3909 1.352622 ACCCTCTGCAGACAACCCAA 61.353 55.000 13.74 0.00 0.00 4.12
3673 3910 1.770110 ACCCTCTGCAGACAACCCA 60.770 57.895 13.74 0.00 0.00 4.51
3674 3911 1.302832 CACCCTCTGCAGACAACCC 60.303 63.158 13.74 0.00 0.00 4.11
3675 3912 0.886490 CACACCCTCTGCAGACAACC 60.886 60.000 13.74 0.00 0.00 3.77
3676 3913 0.106708 TCACACCCTCTGCAGACAAC 59.893 55.000 13.74 0.00 0.00 3.32
3677 3914 1.059098 ATCACACCCTCTGCAGACAA 58.941 50.000 13.74 0.00 0.00 3.18
3678 3915 0.322648 CATCACACCCTCTGCAGACA 59.677 55.000 13.74 0.00 0.00 3.41
3679 3916 0.392193 CCATCACACCCTCTGCAGAC 60.392 60.000 13.74 0.00 0.00 3.51
3680 3917 1.556373 CCCATCACACCCTCTGCAGA 61.556 60.000 17.19 17.19 0.00 4.26
3681 3918 1.077930 CCCATCACACCCTCTGCAG 60.078 63.158 7.63 7.63 0.00 4.41
3682 3919 1.847506 ACCCATCACACCCTCTGCA 60.848 57.895 0.00 0.00 0.00 4.41
3683 3920 1.377725 CACCCATCACACCCTCTGC 60.378 63.158 0.00 0.00 0.00 4.26
3684 3921 0.321919 CACACCCATCACACCCTCTG 60.322 60.000 0.00 0.00 0.00 3.35
3685 3922 1.492133 CCACACCCATCACACCCTCT 61.492 60.000 0.00 0.00 0.00 3.69
3686 3923 1.002134 CCACACCCATCACACCCTC 60.002 63.158 0.00 0.00 0.00 4.30
3687 3924 3.170362 CCACACCCATCACACCCT 58.830 61.111 0.00 0.00 0.00 4.34
3688 3925 2.676471 GCCACACCCATCACACCC 60.676 66.667 0.00 0.00 0.00 4.61
3689 3926 0.899717 ATTGCCACACCCATCACACC 60.900 55.000 0.00 0.00 0.00 4.16
3690 3927 0.968405 AATTGCCACACCCATCACAC 59.032 50.000 0.00 0.00 0.00 3.82
3691 3928 1.343789 CAAATTGCCACACCCATCACA 59.656 47.619 0.00 0.00 0.00 3.58
3692 3929 1.338011 CCAAATTGCCACACCCATCAC 60.338 52.381 0.00 0.00 0.00 3.06
3693 3930 0.975135 CCAAATTGCCACACCCATCA 59.025 50.000 0.00 0.00 0.00 3.07
3694 3931 0.391528 GCCAAATTGCCACACCCATC 60.392 55.000 0.00 0.00 0.00 3.51
3695 3932 1.678724 GCCAAATTGCCACACCCAT 59.321 52.632 0.00 0.00 0.00 4.00
3696 3933 3.146182 GCCAAATTGCCACACCCA 58.854 55.556 0.00 0.00 0.00 4.51
3704 3941 2.182537 CCTCTGCGGCCAAATTGC 59.817 61.111 2.24 0.00 0.00 3.56
3705 3942 1.213537 CACCTCTGCGGCCAAATTG 59.786 57.895 2.24 0.00 35.61 2.32
3706 3943 2.639327 GCACCTCTGCGGCCAAATT 61.639 57.895 2.24 0.00 35.61 1.82
3707 3944 3.064324 GCACCTCTGCGGCCAAAT 61.064 61.111 2.24 0.00 35.61 2.32
3715 3952 0.469070 ATCATGGAGAGCACCTCTGC 59.531 55.000 6.78 6.78 46.73 4.26
3716 3953 1.761198 TCATCATGGAGAGCACCTCTG 59.239 52.381 0.00 0.00 41.35 3.35
3717 3954 1.761784 GTCATCATGGAGAGCACCTCT 59.238 52.381 6.18 0.00 44.28 3.69
3718 3955 1.483827 TGTCATCATGGAGAGCACCTC 59.516 52.381 0.00 0.00 41.22 3.85
3719 3956 1.485480 CTGTCATCATGGAGAGCACCT 59.515 52.381 0.00 0.00 0.00 4.00
3720 3957 1.474677 CCTGTCATCATGGAGAGCACC 60.475 57.143 0.00 0.00 0.00 5.01
3721 3958 1.483827 TCCTGTCATCATGGAGAGCAC 59.516 52.381 0.00 0.00 0.00 4.40
3722 3959 1.870064 TCCTGTCATCATGGAGAGCA 58.130 50.000 0.00 0.00 0.00 4.26
3727 3964 1.483827 GACTGCTCCTGTCATCATGGA 59.516 52.381 0.00 0.00 33.52 3.41
3728 3965 1.805495 CGACTGCTCCTGTCATCATGG 60.805 57.143 0.00 0.00 33.00 3.66
3729 3966 1.568606 CGACTGCTCCTGTCATCATG 58.431 55.000 0.00 0.00 33.00 3.07
3730 3967 0.463204 CCGACTGCTCCTGTCATCAT 59.537 55.000 0.00 0.00 33.00 2.45
3731 3968 0.900182 ACCGACTGCTCCTGTCATCA 60.900 55.000 0.00 0.00 33.00 3.07
3732 3969 0.247736 AACCGACTGCTCCTGTCATC 59.752 55.000 0.00 0.00 33.00 2.92
3733 3970 0.687354 AAACCGACTGCTCCTGTCAT 59.313 50.000 0.00 0.00 33.00 3.06
3734 3971 0.033504 GAAACCGACTGCTCCTGTCA 59.966 55.000 0.00 0.00 33.00 3.58
3735 3972 0.318762 AGAAACCGACTGCTCCTGTC 59.681 55.000 0.00 0.00 0.00 3.51
3736 3973 0.034059 CAGAAACCGACTGCTCCTGT 59.966 55.000 0.00 0.00 0.00 4.00
3737 3974 2.832931 CAGAAACCGACTGCTCCTG 58.167 57.895 0.00 0.00 0.00 3.86
3743 3980 0.236711 CTGCAAGCAGAAACCGACTG 59.763 55.000 16.75 0.00 46.30 3.51
3744 3981 0.886490 CCTGCAAGCAGAAACCGACT 60.886 55.000 22.76 0.00 46.30 4.18
3745 3982 1.576421 CCTGCAAGCAGAAACCGAC 59.424 57.895 22.76 0.00 46.30 4.79
3746 3983 1.600636 CCCTGCAAGCAGAAACCGA 60.601 57.895 22.76 0.00 46.30 4.69
3747 3984 1.455383 AACCCTGCAAGCAGAAACCG 61.455 55.000 22.76 6.01 46.30 4.44
3748 3985 0.315251 GAACCCTGCAAGCAGAAACC 59.685 55.000 22.76 6.24 46.30 3.27
3749 3986 1.000938 CAGAACCCTGCAAGCAGAAAC 60.001 52.381 22.76 10.93 46.30 2.78
3750 3987 1.133823 TCAGAACCCTGCAAGCAGAAA 60.134 47.619 22.76 0.00 46.30 2.52
3751 3988 0.473755 TCAGAACCCTGCAAGCAGAA 59.526 50.000 22.76 0.00 46.30 3.02
3752 3989 0.473755 TTCAGAACCCTGCAAGCAGA 59.526 50.000 22.76 0.00 46.30 4.26
3753 3990 1.542492 ATTCAGAACCCTGCAAGCAG 58.458 50.000 14.91 14.91 43.26 4.24
3754 3991 1.999648 AATTCAGAACCCTGCAAGCA 58.000 45.000 0.00 0.00 40.20 3.91
3755 3992 4.725790 AATAATTCAGAACCCTGCAAGC 57.274 40.909 0.00 0.00 40.20 4.01
3756 3993 7.500227 TCTGATAATAATTCAGAACCCTGCAAG 59.500 37.037 1.08 0.00 44.94 4.01
3757 3994 7.345691 TCTGATAATAATTCAGAACCCTGCAA 58.654 34.615 1.08 0.00 44.94 4.08
3758 3995 6.899089 TCTGATAATAATTCAGAACCCTGCA 58.101 36.000 1.08 0.00 44.94 4.41
3776 4013 9.449719 TCGTAGTTGAGCTATAATCATCTGATA 57.550 33.333 0.00 0.00 31.19 2.15
3803 4040 1.656652 CTGCAGGAAATGTAGGGTCG 58.343 55.000 5.57 0.00 37.93 4.79
3804 4041 1.065126 AGCTGCAGGAAATGTAGGGTC 60.065 52.381 17.12 0.00 41.58 4.46
3805 4042 0.995024 AGCTGCAGGAAATGTAGGGT 59.005 50.000 17.12 0.00 41.58 4.34
3806 4043 2.092968 TGTAGCTGCAGGAAATGTAGGG 60.093 50.000 17.12 0.00 41.58 3.53
3807 4044 3.266510 TGTAGCTGCAGGAAATGTAGG 57.733 47.619 17.12 0.00 41.58 3.18
3808 4045 5.121811 AGAATGTAGCTGCAGGAAATGTAG 58.878 41.667 17.12 0.00 43.92 2.74
3812 4049 3.201290 CGAGAATGTAGCTGCAGGAAAT 58.799 45.455 17.12 0.00 0.00 2.17
3816 4053 1.284657 CACGAGAATGTAGCTGCAGG 58.715 55.000 17.12 0.00 0.00 4.85
3822 4059 6.403333 TGTCAATTAACACGAGAATGTAGC 57.597 37.500 0.00 0.00 30.75 3.58
3834 4071 5.479724 TGCCCAATTCTCATGTCAATTAACA 59.520 36.000 0.00 0.00 0.00 2.41
3856 4099 2.053627 CCTGTTCGTTTGCAGAAATGC 58.946 47.619 0.00 0.00 34.87 3.56
3860 4103 1.266718 GCATCCTGTTCGTTTGCAGAA 59.733 47.619 0.00 0.00 34.87 3.02
3869 4113 1.888215 ATATGCCAGCATCCTGTTCG 58.112 50.000 8.71 0.00 37.38 3.95
3872 4116 1.325355 GCAATATGCCAGCATCCTGT 58.675 50.000 8.71 0.00 37.42 4.00
3931 4266 2.951229 TGTGTTTCTTCTTCCTCCCC 57.049 50.000 0.00 0.00 0.00 4.81
3952 4287 5.699097 TTCGGAGGATTTTCATCGTTTTT 57.301 34.783 0.00 0.00 0.00 1.94
3961 4296 7.065803 TGTTGTATCATCTTTCGGAGGATTTTC 59.934 37.037 0.00 0.00 41.94 2.29
3963 4298 6.316390 GTGTTGTATCATCTTTCGGAGGATTT 59.684 38.462 0.00 0.00 41.94 2.17
3968 4303 6.668541 ATTGTGTTGTATCATCTTTCGGAG 57.331 37.500 0.00 0.00 0.00 4.63
4000 4335 7.148239 ACGAATCTGTTAAAATTGCTCTTAGGG 60.148 37.037 0.00 0.00 0.00 3.53
4025 4360 0.872021 GACGGATGGTGATCGCAGAC 60.872 60.000 8.82 0.00 42.51 3.51
4031 4371 3.854666 CTCCATATGACGGATGGTGATC 58.145 50.000 3.65 0.00 43.79 2.92
4045 4385 0.541392 TCCAAGTGTGCGCTCCATAT 59.459 50.000 9.73 0.00 0.00 1.78
4053 4393 3.123804 GTCCTATGTATCCAAGTGTGCG 58.876 50.000 0.00 0.00 0.00 5.34
4056 4396 3.132289 CCACGTCCTATGTATCCAAGTGT 59.868 47.826 0.00 0.00 0.00 3.55
4068 4408 1.758440 ATGCATCCGCCACGTCCTAT 61.758 55.000 0.00 0.00 37.32 2.57
4077 4417 1.806758 GTGTTTGCATGCATCCGCC 60.807 57.895 23.37 8.30 37.32 6.13
4078 4418 1.074319 CTGTGTTTGCATGCATCCGC 61.074 55.000 23.37 20.41 39.24 5.54
4079 4419 0.522626 TCTGTGTTTGCATGCATCCG 59.477 50.000 23.37 9.11 0.00 4.18
4080 4420 1.542915 ACTCTGTGTTTGCATGCATCC 59.457 47.619 23.37 15.30 0.00 3.51
4081 4421 3.293311 AACTCTGTGTTTGCATGCATC 57.707 42.857 23.37 17.72 34.84 3.91
4135 4475 2.769000 TAACGGTCGAGCACGTGACG 62.769 60.000 22.23 22.55 43.31 4.35
4221 4561 2.957402 TCACCAGCTTTCAGGAACAT 57.043 45.000 0.00 0.00 0.00 2.71
4301 4836 9.176181 TCGCAATTCACTAAAATTTGAAGTTAC 57.824 29.630 4.17 0.00 35.25 2.50
4393 4944 4.439305 TTGTATGATTGTTGGCTTGCTC 57.561 40.909 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.