Multiple sequence alignment - TraesCS1D01G435300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G435300 chr1D 100.000 2201 0 0 1 2201 483921800 483919600 0.000000e+00 4065.0
1 TraesCS1D01G435300 chr1D 98.727 1571 17 3 123 1692 254490942 254492510 0.000000e+00 2787.0
2 TraesCS1D01G435300 chr1D 98.915 1290 12 1 1 1288 394180075 394181364 0.000000e+00 2303.0
3 TraesCS1D01G435300 chr1D 99.613 517 2 0 1685 2201 483918528 483919044 0.000000e+00 944.0
4 TraesCS1D01G435300 chr1D 99.226 517 4 0 1685 2201 483920331 483920847 0.000000e+00 933.0
5 TraesCS1D01G435300 chr1D 99.033 517 4 1 1685 2201 254492288 254491773 0.000000e+00 926.0
6 TraesCS1D01G435300 chr5D 98.641 1692 20 3 1 1692 6206665 6204977 0.000000e+00 2994.0
7 TraesCS1D01G435300 chr5D 99.157 1542 12 1 152 1692 240132461 240134002 0.000000e+00 2774.0
8 TraesCS1D01G435300 chr5D 99.420 517 3 0 1685 2201 240133780 240133264 0.000000e+00 939.0
9 TraesCS1D01G435300 chr5D 98.839 517 6 0 1685 2201 449153077 449153593 0.000000e+00 922.0
10 TraesCS1D01G435300 chr5D 98.646 517 7 0 1685 2201 6205196 6205712 0.000000e+00 917.0
11 TraesCS1D01G435300 chr3B 98.286 1692 28 1 1 1692 201507736 201509426 0.000000e+00 2963.0
12 TraesCS1D01G435300 chr3B 86.607 336 26 7 1130 1461 252674202 252673882 9.670000e-94 353.0
13 TraesCS1D01G435300 chr3D 97.991 1692 16 2 1 1692 21898714 21900387 0.000000e+00 2920.0
14 TraesCS1D01G435300 chr3D 99.420 517 3 0 1685 2201 21900165 21899649 0.000000e+00 939.0
15 TraesCS1D01G435300 chrUn 99.356 1553 10 0 1 1553 317472028 317470476 0.000000e+00 2813.0
16 TraesCS1D01G435300 chrUn 99.238 1313 9 1 203 1514 412876642 412877954 0.000000e+00 2368.0
17 TraesCS1D01G435300 chrUn 99.420 517 3 0 1685 2201 412877910 412877394 0.000000e+00 939.0
18 TraesCS1D01G435300 chrUn 99.226 517 4 0 1685 2201 317470559 317471075 0.000000e+00 933.0
19 TraesCS1D01G435300 chr2D 96.169 1723 31 7 1 1692 334227074 334228792 0.000000e+00 2784.0
20 TraesCS1D01G435300 chr2D 94.286 105 5 1 45 149 476354728 476354625 2.260000e-35 159.0
21 TraesCS1D01G435300 chr2A 96.949 721 13 2 972 1692 42773842 42773131 0.000000e+00 1201.0
22 TraesCS1D01G435300 chr2A 97.987 149 3 0 1523 1671 540249360 540249508 2.170000e-65 259.0
23 TraesCS1D01G435300 chr2B 93.624 298 2 1 1 298 759338827 759338547 1.560000e-116 429.0
24 TraesCS1D01G435300 chr2B 94.393 107 5 1 43 149 557236944 557236839 1.750000e-36 163.0
25 TraesCS1D01G435300 chr2B 100.000 31 0 0 1 31 205845498 205845528 8.490000e-05 58.4
26 TraesCS1D01G435300 chr4A 94.907 216 10 1 1365 1579 741796012 741796227 9.740000e-89 337.0
27 TraesCS1D01G435300 chr7A 97.714 175 4 0 1500 1674 582582441 582582615 3.550000e-78 302.0
28 TraesCS1D01G435300 chr7A 98.193 166 3 0 1527 1692 357646856 357646691 7.690000e-75 291.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G435300 chr1D 483919600 483921800 2200 True 4065.0 4065 100.0000 1 2201 1 chr1D.!!$R2 2200
1 TraesCS1D01G435300 chr1D 254490942 254492510 1568 False 2787.0 2787 98.7270 123 1692 1 chr1D.!!$F1 1569
2 TraesCS1D01G435300 chr1D 394180075 394181364 1289 False 2303.0 2303 98.9150 1 1288 1 chr1D.!!$F2 1287
3 TraesCS1D01G435300 chr1D 483918528 483920847 2319 False 938.5 944 99.4195 1685 2201 2 chr1D.!!$F3 516
4 TraesCS1D01G435300 chr1D 254491773 254492288 515 True 926.0 926 99.0330 1685 2201 1 chr1D.!!$R1 516
5 TraesCS1D01G435300 chr5D 6204977 6206665 1688 True 2994.0 2994 98.6410 1 1692 1 chr5D.!!$R1 1691
6 TraesCS1D01G435300 chr5D 240132461 240134002 1541 False 2774.0 2774 99.1570 152 1692 1 chr5D.!!$F2 1540
7 TraesCS1D01G435300 chr5D 240133264 240133780 516 True 939.0 939 99.4200 1685 2201 1 chr5D.!!$R2 516
8 TraesCS1D01G435300 chr5D 449153077 449153593 516 False 922.0 922 98.8390 1685 2201 1 chr5D.!!$F3 516
9 TraesCS1D01G435300 chr5D 6205196 6205712 516 False 917.0 917 98.6460 1685 2201 1 chr5D.!!$F1 516
10 TraesCS1D01G435300 chr3B 201507736 201509426 1690 False 2963.0 2963 98.2860 1 1692 1 chr3B.!!$F1 1691
11 TraesCS1D01G435300 chr3D 21898714 21900387 1673 False 2920.0 2920 97.9910 1 1692 1 chr3D.!!$F1 1691
12 TraesCS1D01G435300 chr3D 21899649 21900165 516 True 939.0 939 99.4200 1685 2201 1 chr3D.!!$R1 516
13 TraesCS1D01G435300 chrUn 317470476 317472028 1552 True 2813.0 2813 99.3560 1 1553 1 chrUn.!!$R1 1552
14 TraesCS1D01G435300 chrUn 412876642 412877954 1312 False 2368.0 2368 99.2380 203 1514 1 chrUn.!!$F2 1311
15 TraesCS1D01G435300 chrUn 412877394 412877910 516 True 939.0 939 99.4200 1685 2201 1 chrUn.!!$R2 516
16 TraesCS1D01G435300 chrUn 317470559 317471075 516 False 933.0 933 99.2260 1685 2201 1 chrUn.!!$F1 516
17 TraesCS1D01G435300 chr2D 334227074 334228792 1718 False 2784.0 2784 96.1690 1 1692 1 chr2D.!!$F1 1691
18 TraesCS1D01G435300 chr2A 42773131 42773842 711 True 1201.0 1201 96.9490 972 1692 1 chr2A.!!$R1 720

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
439 440 1.405463 GGAGGATTTTCAATGCGGGAC 59.595 52.381 0.0 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1639 1645 0.035458 ATCAATTCGATCTCCCGGGC 59.965 55.0 18.49 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
417 418 8.565896 TGATCATATATGTATTCCAACAAGGC 57.434 34.615 12.42 0.00 37.29 4.35
439 440 1.405463 GGAGGATTTTCAATGCGGGAC 59.595 52.381 0.00 0.00 0.00 4.46
458 459 6.146347 GCGGGACATAAAAACATATCTCTCTC 59.854 42.308 0.00 0.00 0.00 3.20
768 770 6.426587 AGCTAAATAAGGCCTCAGAAATCAA 58.573 36.000 5.23 0.00 0.00 2.57
1315 1321 7.154435 ACAAATCAACTCATCTGATTTCTGG 57.846 36.000 7.62 1.71 45.88 3.86
1316 1322 6.718454 ACAAATCAACTCATCTGATTTCTGGT 59.282 34.615 7.62 2.22 45.88 4.00
1317 1323 7.884877 ACAAATCAACTCATCTGATTTCTGGTA 59.115 33.333 7.62 0.00 45.88 3.25
1318 1324 8.396390 CAAATCAACTCATCTGATTTCTGGTAG 58.604 37.037 7.62 0.00 45.88 3.18
1319 1325 6.857437 TCAACTCATCTGATTTCTGGTAGA 57.143 37.500 0.00 0.00 0.00 2.59
1320 1326 7.429374 TCAACTCATCTGATTTCTGGTAGAT 57.571 36.000 0.00 0.00 0.00 1.98
1321 1327 8.539117 TCAACTCATCTGATTTCTGGTAGATA 57.461 34.615 0.00 0.00 0.00 1.98
1322 1328 9.152327 TCAACTCATCTGATTTCTGGTAGATAT 57.848 33.333 0.00 0.00 0.00 1.63
1323 1329 9.775854 CAACTCATCTGATTTCTGGTAGATATT 57.224 33.333 0.00 0.00 0.00 1.28
1402 1408 8.980481 TGGATCAAAGAAAAACTACTTCTTCT 57.020 30.769 0.00 0.00 41.24 2.85
1403 1409 8.840321 TGGATCAAAGAAAAACTACTTCTTCTG 58.160 33.333 0.00 1.50 41.24 3.02
1404 1410 8.293157 GGATCAAAGAAAAACTACTTCTTCTGG 58.707 37.037 0.00 0.00 41.24 3.86
1405 1411 8.980481 ATCAAAGAAAAACTACTTCTTCTGGA 57.020 30.769 0.00 0.00 41.24 3.86
1406 1412 8.980481 TCAAAGAAAAACTACTTCTTCTGGAT 57.020 30.769 0.00 0.00 41.24 3.41
1407 1413 9.057089 TCAAAGAAAAACTACTTCTTCTGGATC 57.943 33.333 0.00 0.00 41.24 3.36
1408 1414 7.987750 AAGAAAAACTACTTCTTCTGGATCC 57.012 36.000 4.20 4.20 38.47 3.36
1409 1415 7.323052 AGAAAAACTACTTCTTCTGGATCCT 57.677 36.000 14.23 0.00 28.46 3.24
1410 1416 8.437274 AGAAAAACTACTTCTTCTGGATCCTA 57.563 34.615 14.23 0.00 28.46 2.94
1411 1417 8.881262 AGAAAAACTACTTCTTCTGGATCCTAA 58.119 33.333 14.23 6.62 28.46 2.69
1412 1418 9.503399 GAAAAACTACTTCTTCTGGATCCTAAA 57.497 33.333 14.23 6.27 0.00 1.85
1509 1515 9.529325 AACAACCTTTTCTTAAATCTAAGCAAC 57.471 29.630 0.00 0.00 35.42 4.17
1510 1516 8.141909 ACAACCTTTTCTTAAATCTAAGCAACC 58.858 33.333 0.00 0.00 35.42 3.77
1511 1517 7.228314 ACCTTTTCTTAAATCTAAGCAACCC 57.772 36.000 0.00 0.00 35.42 4.11
1512 1518 7.010771 ACCTTTTCTTAAATCTAAGCAACCCT 58.989 34.615 0.00 0.00 35.42 4.34
1513 1519 7.509318 ACCTTTTCTTAAATCTAAGCAACCCTT 59.491 33.333 0.00 0.00 35.42 3.95
1514 1520 8.367911 CCTTTTCTTAAATCTAAGCAACCCTTT 58.632 33.333 0.00 0.00 35.42 3.11
1517 1523 9.582648 TTTCTTAAATCTAAGCAACCCTTTAGT 57.417 29.630 0.00 0.00 35.42 2.24
1523 1529 8.521170 AATCTAAGCAACCCTTTAGTAAATCC 57.479 34.615 0.00 0.00 34.95 3.01
1524 1530 7.023171 TCTAAGCAACCCTTTAGTAAATCCA 57.977 36.000 0.00 0.00 34.95 3.41
1525 1531 7.463431 TCTAAGCAACCCTTTAGTAAATCCAA 58.537 34.615 0.00 0.00 34.95 3.53
1526 1532 6.590234 AAGCAACCCTTTAGTAAATCCAAG 57.410 37.500 0.00 0.00 0.00 3.61
1527 1533 4.462834 AGCAACCCTTTAGTAAATCCAAGC 59.537 41.667 0.00 0.00 0.00 4.01
1528 1534 4.219725 GCAACCCTTTAGTAAATCCAAGCA 59.780 41.667 0.00 0.00 0.00 3.91
1529 1535 5.279256 GCAACCCTTTAGTAAATCCAAGCAA 60.279 40.000 0.00 0.00 0.00 3.91
1530 1536 6.740122 GCAACCCTTTAGTAAATCCAAGCAAA 60.740 38.462 0.00 0.00 0.00 3.68
1531 1537 6.340962 ACCCTTTAGTAAATCCAAGCAAAC 57.659 37.500 0.00 0.00 0.00 2.93
1532 1538 6.075315 ACCCTTTAGTAAATCCAAGCAAACT 58.925 36.000 0.00 0.00 0.00 2.66
1533 1539 6.553476 ACCCTTTAGTAAATCCAAGCAAACTT 59.447 34.615 0.00 0.00 36.19 2.66
1534 1540 7.070696 ACCCTTTAGTAAATCCAAGCAAACTTT 59.929 33.333 0.00 0.00 32.29 2.66
1535 1541 7.931407 CCCTTTAGTAAATCCAAGCAAACTTTT 59.069 33.333 0.00 0.00 32.29 2.27
1536 1542 9.974980 CCTTTAGTAAATCCAAGCAAACTTTTA 57.025 29.630 0.00 0.00 32.29 1.52
1547 1553 9.487790 TCCAAGCAAACTTTTAATAAATCCAAG 57.512 29.630 0.00 0.00 32.29 3.61
1548 1554 8.229811 CCAAGCAAACTTTTAATAAATCCAAGC 58.770 33.333 0.00 0.00 32.29 4.01
1549 1555 8.772705 CAAGCAAACTTTTAATAAATCCAAGCA 58.227 29.630 0.00 0.00 32.29 3.91
1550 1556 8.900983 AGCAAACTTTTAATAAATCCAAGCAA 57.099 26.923 0.00 0.00 0.00 3.91
1551 1557 8.773645 AGCAAACTTTTAATAAATCCAAGCAAC 58.226 29.630 0.00 0.00 0.00 4.17
1552 1558 8.015087 GCAAACTTTTAATAAATCCAAGCAACC 58.985 33.333 0.00 0.00 0.00 3.77
1553 1559 8.503196 CAAACTTTTAATAAATCCAAGCAACCC 58.497 33.333 0.00 0.00 0.00 4.11
1554 1560 7.553504 ACTTTTAATAAATCCAAGCAACCCT 57.446 32.000 0.00 0.00 0.00 4.34
1555 1561 7.973402 ACTTTTAATAAATCCAAGCAACCCTT 58.027 30.769 0.00 0.00 0.00 3.95
1556 1562 8.436778 ACTTTTAATAAATCCAAGCAACCCTTT 58.563 29.630 0.00 0.00 0.00 3.11
1557 1563 8.840833 TTTTAATAAATCCAAGCAACCCTTTC 57.159 30.769 0.00 0.00 0.00 2.62
1558 1564 4.718940 ATAAATCCAAGCAACCCTTTCG 57.281 40.909 0.00 0.00 0.00 3.46
1559 1565 1.995376 AATCCAAGCAACCCTTTCGT 58.005 45.000 0.00 0.00 0.00 3.85
1560 1566 2.871096 ATCCAAGCAACCCTTTCGTA 57.129 45.000 0.00 0.00 0.00 3.43
1561 1567 2.642154 TCCAAGCAACCCTTTCGTAA 57.358 45.000 0.00 0.00 0.00 3.18
1562 1568 2.933573 TCCAAGCAACCCTTTCGTAAA 58.066 42.857 0.00 0.00 0.00 2.01
1563 1569 3.492337 TCCAAGCAACCCTTTCGTAAAT 58.508 40.909 0.00 0.00 0.00 1.40
1564 1570 3.504520 TCCAAGCAACCCTTTCGTAAATC 59.495 43.478 0.00 0.00 0.00 2.17
1565 1571 3.366985 CCAAGCAACCCTTTCGTAAATCC 60.367 47.826 0.00 0.00 0.00 3.01
1566 1572 3.149005 AGCAACCCTTTCGTAAATCCA 57.851 42.857 0.00 0.00 0.00 3.41
1567 1573 3.492337 AGCAACCCTTTCGTAAATCCAA 58.508 40.909 0.00 0.00 0.00 3.53
1568 1574 3.506067 AGCAACCCTTTCGTAAATCCAAG 59.494 43.478 0.00 0.00 0.00 3.61
1569 1575 3.833442 CAACCCTTTCGTAAATCCAAGC 58.167 45.455 0.00 0.00 0.00 4.01
1570 1576 3.149005 ACCCTTTCGTAAATCCAAGCA 57.851 42.857 0.00 0.00 0.00 3.91
1571 1577 3.492337 ACCCTTTCGTAAATCCAAGCAA 58.508 40.909 0.00 0.00 0.00 3.91
1572 1578 3.892588 ACCCTTTCGTAAATCCAAGCAAA 59.107 39.130 0.00 0.00 0.00 3.68
1573 1579 4.234574 CCCTTTCGTAAATCCAAGCAAAC 58.765 43.478 0.00 0.00 0.00 2.93
1574 1580 4.022329 CCCTTTCGTAAATCCAAGCAAACT 60.022 41.667 0.00 0.00 0.00 2.66
1575 1581 5.508994 CCCTTTCGTAAATCCAAGCAAACTT 60.509 40.000 0.00 0.00 36.19 2.66
1576 1582 5.983118 CCTTTCGTAAATCCAAGCAAACTTT 59.017 36.000 0.00 0.00 32.29 2.66
1577 1583 6.478673 CCTTTCGTAAATCCAAGCAAACTTTT 59.521 34.615 0.00 0.00 32.29 2.27
1578 1584 7.306574 CCTTTCGTAAATCCAAGCAAACTTTTC 60.307 37.037 0.00 0.00 32.29 2.29
1579 1585 5.209240 TCGTAAATCCAAGCAAACTTTTCG 58.791 37.500 0.00 0.00 32.29 3.46
1580 1586 4.973663 CGTAAATCCAAGCAAACTTTTCGT 59.026 37.500 0.00 0.00 32.29 3.85
1581 1587 6.018098 TCGTAAATCCAAGCAAACTTTTCGTA 60.018 34.615 0.00 0.00 32.29 3.43
1582 1588 6.633634 CGTAAATCCAAGCAAACTTTTCGTAA 59.366 34.615 0.00 0.00 32.29 3.18
1583 1589 7.166142 CGTAAATCCAAGCAAACTTTTCGTAAA 59.834 33.333 0.00 0.00 32.29 2.01
1584 1590 8.974408 GTAAATCCAAGCAAACTTTTCGTAAAT 58.026 29.630 0.00 0.00 32.29 1.40
1585 1591 8.432110 AAATCCAAGCAAACTTTTCGTAAATT 57.568 26.923 0.00 0.00 32.29 1.82
1586 1592 7.637709 ATCCAAGCAAACTTTTCGTAAATTC 57.362 32.000 0.00 0.00 32.29 2.17
1587 1593 6.565234 TCCAAGCAAACTTTTCGTAAATTCA 58.435 32.000 0.00 0.00 32.29 2.57
1588 1594 7.036220 TCCAAGCAAACTTTTCGTAAATTCAA 58.964 30.769 0.00 0.00 32.29 2.69
1589 1595 7.221838 TCCAAGCAAACTTTTCGTAAATTCAAG 59.778 33.333 0.00 0.00 32.29 3.02
1590 1596 6.510746 AGCAAACTTTTCGTAAATTCAAGC 57.489 33.333 0.00 0.00 0.00 4.01
1591 1597 6.039616 AGCAAACTTTTCGTAAATTCAAGCA 58.960 32.000 0.00 0.00 0.00 3.91
1592 1598 6.533367 AGCAAACTTTTCGTAAATTCAAGCAA 59.467 30.769 0.00 0.00 0.00 3.91
1593 1599 6.623353 GCAAACTTTTCGTAAATTCAAGCAAC 59.377 34.615 0.00 0.00 0.00 4.17
1594 1600 6.822073 AACTTTTCGTAAATTCAAGCAACC 57.178 33.333 0.00 0.00 0.00 3.77
1595 1601 6.144078 ACTTTTCGTAAATTCAAGCAACCT 57.856 33.333 0.00 0.00 0.00 3.50
1596 1602 6.569780 ACTTTTCGTAAATTCAAGCAACCTT 58.430 32.000 0.00 0.00 0.00 3.50
1597 1603 7.039270 ACTTTTCGTAAATTCAAGCAACCTTT 58.961 30.769 0.00 0.00 0.00 3.11
1598 1604 7.547722 ACTTTTCGTAAATTCAAGCAACCTTTT 59.452 29.630 0.00 0.00 0.00 2.27
1599 1605 7.458038 TTTCGTAAATTCAAGCAACCTTTTC 57.542 32.000 0.00 0.00 0.00 2.29
1600 1606 5.209240 TCGTAAATTCAAGCAACCTTTTCG 58.791 37.500 0.00 0.00 0.00 3.46
1601 1607 4.973663 CGTAAATTCAAGCAACCTTTTCGT 59.026 37.500 0.00 0.00 0.00 3.85
1602 1608 6.018098 TCGTAAATTCAAGCAACCTTTTCGTA 60.018 34.615 0.00 0.00 0.00 3.43
1603 1609 6.633634 CGTAAATTCAAGCAACCTTTTCGTAA 59.366 34.615 0.00 0.00 0.00 3.18
1604 1610 7.166142 CGTAAATTCAAGCAACCTTTTCGTAAA 59.834 33.333 0.00 0.00 0.00 2.01
1605 1611 8.974408 GTAAATTCAAGCAACCTTTTCGTAAAT 58.026 29.630 0.00 0.00 0.00 1.40
1606 1612 7.637709 AATTCAAGCAACCTTTTCGTAAATC 57.362 32.000 0.00 0.00 0.00 2.17
1607 1613 6.385649 TTCAAGCAACCTTTTCGTAAATCT 57.614 33.333 0.00 0.00 0.00 2.40
1608 1614 7.499321 TTCAAGCAACCTTTTCGTAAATCTA 57.501 32.000 0.00 0.00 0.00 1.98
1609 1615 7.499321 TCAAGCAACCTTTTCGTAAATCTAA 57.501 32.000 0.00 0.00 0.00 2.10
1610 1616 7.932335 TCAAGCAACCTTTTCGTAAATCTAAA 58.068 30.769 0.00 0.00 0.00 1.85
1611 1617 7.858879 TCAAGCAACCTTTTCGTAAATCTAAAC 59.141 33.333 0.00 0.00 0.00 2.01
1612 1618 7.266922 AGCAACCTTTTCGTAAATCTAAACA 57.733 32.000 0.00 0.00 0.00 2.83
1613 1619 7.708998 AGCAACCTTTTCGTAAATCTAAACAA 58.291 30.769 0.00 0.00 0.00 2.83
1614 1620 7.646526 AGCAACCTTTTCGTAAATCTAAACAAC 59.353 33.333 0.00 0.00 0.00 3.32
1615 1621 7.096353 GCAACCTTTTCGTAAATCTAAACAACC 60.096 37.037 0.00 0.00 0.00 3.77
1616 1622 7.812690 ACCTTTTCGTAAATCTAAACAACCT 57.187 32.000 0.00 0.00 0.00 3.50
1617 1623 8.229253 ACCTTTTCGTAAATCTAAACAACCTT 57.771 30.769 0.00 0.00 0.00 3.50
1618 1624 8.689061 ACCTTTTCGTAAATCTAAACAACCTTT 58.311 29.630 0.00 0.00 0.00 3.11
1619 1625 9.524106 CCTTTTCGTAAATCTAAACAACCTTTT 57.476 29.630 0.00 0.00 0.00 2.27
1621 1627 8.770850 TTTCGTAAATCTAAACAACCTTTTCG 57.229 30.769 0.00 0.00 0.00 3.46
1622 1628 7.481275 TCGTAAATCTAAACAACCTTTTCGT 57.519 32.000 0.00 0.00 0.00 3.85
1623 1629 8.586570 TCGTAAATCTAAACAACCTTTTCGTA 57.413 30.769 0.00 0.00 0.00 3.43
1624 1630 8.702438 TCGTAAATCTAAACAACCTTTTCGTAG 58.298 33.333 0.00 0.00 0.00 3.51
1625 1631 7.953710 CGTAAATCTAAACAACCTTTTCGTAGG 59.046 37.037 0.00 0.00 41.31 3.18
1626 1632 5.874895 ATCTAAACAACCTTTTCGTAGGC 57.125 39.130 0.00 0.00 38.99 3.93
1627 1633 3.742369 TCTAAACAACCTTTTCGTAGGCG 59.258 43.478 0.00 0.00 38.99 5.52
1628 1634 1.957668 AACAACCTTTTCGTAGGCGT 58.042 45.000 0.00 0.00 38.99 5.68
1629 1635 1.505425 ACAACCTTTTCGTAGGCGTC 58.495 50.000 0.00 0.00 38.99 5.19
1630 1636 0.794473 CAACCTTTTCGTAGGCGTCC 59.206 55.000 0.00 0.00 38.99 4.79
1631 1637 0.683412 AACCTTTTCGTAGGCGTCCT 59.317 50.000 3.87 3.87 38.99 3.85
1632 1638 0.245813 ACCTTTTCGTAGGCGTCCTC 59.754 55.000 1.46 0.00 38.99 3.71
1633 1639 0.801067 CCTTTTCGTAGGCGTCCTCG 60.801 60.000 1.46 6.55 39.49 4.63
1634 1640 0.801067 CTTTTCGTAGGCGTCCTCGG 60.801 60.000 1.46 0.00 39.49 4.63
1635 1641 1.243342 TTTTCGTAGGCGTCCTCGGA 61.243 55.000 1.46 0.00 39.49 4.55
1636 1642 1.033746 TTTCGTAGGCGTCCTCGGAT 61.034 55.000 1.46 0.00 39.49 4.18
1637 1643 1.033746 TTCGTAGGCGTCCTCGGATT 61.034 55.000 1.46 0.00 39.49 3.01
1638 1644 1.299165 CGTAGGCGTCCTCGGATTG 60.299 63.158 1.46 0.00 34.61 2.67
1639 1645 1.067582 GTAGGCGTCCTCGGATTGG 59.932 63.158 1.46 0.00 34.61 3.16
1640 1646 2.792947 TAGGCGTCCTCGGATTGGC 61.793 63.158 1.46 6.61 34.61 4.52
1649 1655 3.560251 CGGATTGGCCCGGGAGAT 61.560 66.667 29.31 14.53 45.43 2.75
1650 1656 2.432123 GGATTGGCCCGGGAGATC 59.568 66.667 29.31 22.07 0.00 2.75
1651 1657 2.031163 GATTGGCCCGGGAGATCG 59.969 66.667 29.31 0.00 0.00 3.69
1652 1658 2.445845 ATTGGCCCGGGAGATCGA 60.446 61.111 29.31 10.39 0.00 3.59
1653 1659 2.040009 GATTGGCCCGGGAGATCGAA 62.040 60.000 29.31 10.52 0.00 3.71
1654 1660 1.418908 ATTGGCCCGGGAGATCGAAT 61.419 55.000 29.31 12.61 0.00 3.34
1655 1661 1.632018 TTGGCCCGGGAGATCGAATT 61.632 55.000 29.31 0.00 0.00 2.17
1656 1662 1.598130 GGCCCGGGAGATCGAATTG 60.598 63.158 29.31 0.00 0.00 2.32
1657 1663 1.445942 GCCCGGGAGATCGAATTGA 59.554 57.895 29.31 0.00 0.00 2.57
1658 1664 0.035458 GCCCGGGAGATCGAATTGAT 59.965 55.000 29.31 0.00 41.06 2.57
1659 1665 1.543429 GCCCGGGAGATCGAATTGATT 60.543 52.381 29.31 0.00 37.47 2.57
1660 1666 2.289444 GCCCGGGAGATCGAATTGATTA 60.289 50.000 29.31 0.00 37.47 1.75
1661 1667 3.619979 GCCCGGGAGATCGAATTGATTAT 60.620 47.826 29.31 0.00 37.47 1.28
1662 1668 4.382685 GCCCGGGAGATCGAATTGATTATA 60.383 45.833 29.31 0.00 37.47 0.98
1663 1669 5.352284 CCCGGGAGATCGAATTGATTATAG 58.648 45.833 18.48 0.00 37.47 1.31
1664 1670 5.127194 CCCGGGAGATCGAATTGATTATAGA 59.873 44.000 18.48 0.00 37.47 1.98
1665 1671 6.351033 CCCGGGAGATCGAATTGATTATAGAA 60.351 42.308 18.48 0.00 37.47 2.10
1666 1672 7.097192 CCGGGAGATCGAATTGATTATAGAAA 58.903 38.462 0.00 0.00 37.47 2.52
1667 1673 7.063544 CCGGGAGATCGAATTGATTATAGAAAC 59.936 40.741 0.00 0.00 37.47 2.78
1668 1674 7.598869 CGGGAGATCGAATTGATTATAGAAACA 59.401 37.037 0.00 0.00 37.47 2.83
1669 1675 9.442047 GGGAGATCGAATTGATTATAGAAACAT 57.558 33.333 0.00 0.00 37.47 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
417 418 1.406539 CCCGCATTGAAAATCCTCCTG 59.593 52.381 0.00 0.00 0.00 3.86
439 440 9.202273 GGTGCTAGAGAGAGATATGTTTTTATG 57.798 37.037 0.00 0.00 0.00 1.90
768 770 1.359130 AGCCCCACCTTTTCTATGCTT 59.641 47.619 0.00 0.00 0.00 3.91
1294 1300 7.855375 TCTACCAGAAATCAGATGAGTTGATT 58.145 34.615 0.00 0.00 44.78 2.57
1295 1301 7.429374 TCTACCAGAAATCAGATGAGTTGAT 57.571 36.000 0.00 0.00 36.87 2.57
1296 1302 6.857437 TCTACCAGAAATCAGATGAGTTGA 57.143 37.500 0.00 0.00 32.01 3.18
1297 1303 9.775854 AATATCTACCAGAAATCAGATGAGTTG 57.224 33.333 0.00 0.00 32.01 3.16
1376 1382 9.579932 AGAAGAAGTAGTTTTTCTTTGATCCAT 57.420 29.630 9.69 0.00 43.07 3.41
1377 1383 8.840321 CAGAAGAAGTAGTTTTTCTTTGATCCA 58.160 33.333 12.24 0.00 43.07 3.41
1378 1384 8.293157 CCAGAAGAAGTAGTTTTTCTTTGATCC 58.707 37.037 12.24 0.00 43.07 3.36
1379 1385 9.057089 TCCAGAAGAAGTAGTTTTTCTTTGATC 57.943 33.333 12.24 0.00 43.07 2.92
1380 1386 8.980481 TCCAGAAGAAGTAGTTTTTCTTTGAT 57.020 30.769 12.24 0.00 43.07 2.57
1381 1387 8.980481 ATCCAGAAGAAGTAGTTTTTCTTTGA 57.020 30.769 12.24 11.99 43.07 2.69
1382 1388 8.293157 GGATCCAGAAGAAGTAGTTTTTCTTTG 58.707 37.037 12.24 7.96 43.07 2.77
1383 1389 8.221251 AGGATCCAGAAGAAGTAGTTTTTCTTT 58.779 33.333 15.82 2.84 43.07 2.52
1384 1390 7.750655 AGGATCCAGAAGAAGTAGTTTTTCTT 58.249 34.615 15.82 0.00 45.05 2.52
1385 1391 7.323052 AGGATCCAGAAGAAGTAGTTTTTCT 57.677 36.000 15.82 9.69 36.49 2.52
1386 1392 9.503399 TTTAGGATCCAGAAGAAGTAGTTTTTC 57.497 33.333 15.82 5.61 0.00 2.29
1483 1489 9.529325 GTTGCTTAGATTTAAGAAAAGGTTGTT 57.471 29.630 7.19 0.00 36.42 2.83
1484 1490 8.141909 GGTTGCTTAGATTTAAGAAAAGGTTGT 58.858 33.333 7.19 0.00 36.42 3.32
1485 1491 7.598869 GGGTTGCTTAGATTTAAGAAAAGGTTG 59.401 37.037 7.19 0.00 36.42 3.77
1486 1492 7.509318 AGGGTTGCTTAGATTTAAGAAAAGGTT 59.491 33.333 7.19 0.00 36.42 3.50
1487 1493 7.010771 AGGGTTGCTTAGATTTAAGAAAAGGT 58.989 34.615 7.19 0.00 36.42 3.50
1488 1494 7.468141 AGGGTTGCTTAGATTTAAGAAAAGG 57.532 36.000 7.19 0.00 36.42 3.11
1491 1497 9.582648 ACTAAAGGGTTGCTTAGATTTAAGAAA 57.417 29.630 7.19 0.00 38.88 2.52
1497 1503 8.967918 GGATTTACTAAAGGGTTGCTTAGATTT 58.032 33.333 0.00 0.00 0.00 2.17
1498 1504 8.113462 TGGATTTACTAAAGGGTTGCTTAGATT 58.887 33.333 0.00 0.00 0.00 2.40
1499 1505 7.639378 TGGATTTACTAAAGGGTTGCTTAGAT 58.361 34.615 0.00 0.00 0.00 1.98
1500 1506 7.023171 TGGATTTACTAAAGGGTTGCTTAGA 57.977 36.000 0.00 0.00 0.00 2.10
1501 1507 7.628580 GCTTGGATTTACTAAAGGGTTGCTTAG 60.629 40.741 0.00 0.00 0.00 2.18
1502 1508 6.152154 GCTTGGATTTACTAAAGGGTTGCTTA 59.848 38.462 0.00 0.00 0.00 3.09
1503 1509 5.047306 GCTTGGATTTACTAAAGGGTTGCTT 60.047 40.000 0.00 0.00 0.00 3.91
1504 1510 4.462834 GCTTGGATTTACTAAAGGGTTGCT 59.537 41.667 0.00 0.00 0.00 3.91
1505 1511 4.219725 TGCTTGGATTTACTAAAGGGTTGC 59.780 41.667 0.00 0.00 0.00 4.17
1506 1512 5.975693 TGCTTGGATTTACTAAAGGGTTG 57.024 39.130 0.00 0.00 0.00 3.77
1507 1513 6.553476 AGTTTGCTTGGATTTACTAAAGGGTT 59.447 34.615 0.00 0.00 0.00 4.11
1508 1514 6.075315 AGTTTGCTTGGATTTACTAAAGGGT 58.925 36.000 0.00 0.00 0.00 4.34
1509 1515 6.590234 AGTTTGCTTGGATTTACTAAAGGG 57.410 37.500 0.00 0.00 0.00 3.95
1510 1516 8.887036 AAAAGTTTGCTTGGATTTACTAAAGG 57.113 30.769 0.00 0.00 34.71 3.11
1521 1527 9.487790 CTTGGATTTATTAAAAGTTTGCTTGGA 57.512 29.630 0.00 0.00 34.71 3.53
1522 1528 8.229811 GCTTGGATTTATTAAAAGTTTGCTTGG 58.770 33.333 0.00 0.00 34.71 3.61
1523 1529 8.772705 TGCTTGGATTTATTAAAAGTTTGCTTG 58.227 29.630 0.00 0.00 34.71 4.01
1524 1530 8.900983 TGCTTGGATTTATTAAAAGTTTGCTT 57.099 26.923 0.00 0.00 36.30 3.91
1525 1531 8.773645 GTTGCTTGGATTTATTAAAAGTTTGCT 58.226 29.630 0.00 0.00 0.00 3.91
1526 1532 8.015087 GGTTGCTTGGATTTATTAAAAGTTTGC 58.985 33.333 0.00 0.00 0.00 3.68
1527 1533 8.503196 GGGTTGCTTGGATTTATTAAAAGTTTG 58.497 33.333 0.00 0.00 0.00 2.93
1528 1534 8.436778 AGGGTTGCTTGGATTTATTAAAAGTTT 58.563 29.630 0.00 0.00 0.00 2.66
1529 1535 7.973402 AGGGTTGCTTGGATTTATTAAAAGTT 58.027 30.769 0.00 0.00 0.00 2.66
1530 1536 7.553504 AGGGTTGCTTGGATTTATTAAAAGT 57.446 32.000 0.00 0.00 0.00 2.66
1531 1537 8.846943 AAAGGGTTGCTTGGATTTATTAAAAG 57.153 30.769 0.00 0.00 0.00 2.27
1532 1538 7.600752 CGAAAGGGTTGCTTGGATTTATTAAAA 59.399 33.333 0.00 0.00 0.00 1.52
1533 1539 7.093992 CGAAAGGGTTGCTTGGATTTATTAAA 58.906 34.615 0.00 0.00 0.00 1.52
1534 1540 6.209788 ACGAAAGGGTTGCTTGGATTTATTAA 59.790 34.615 0.00 0.00 0.00 1.40
1535 1541 5.712917 ACGAAAGGGTTGCTTGGATTTATTA 59.287 36.000 0.00 0.00 0.00 0.98
1536 1542 4.526650 ACGAAAGGGTTGCTTGGATTTATT 59.473 37.500 0.00 0.00 0.00 1.40
1537 1543 4.086457 ACGAAAGGGTTGCTTGGATTTAT 58.914 39.130 0.00 0.00 0.00 1.40
1538 1544 3.492337 ACGAAAGGGTTGCTTGGATTTA 58.508 40.909 0.00 0.00 0.00 1.40
1539 1545 2.316108 ACGAAAGGGTTGCTTGGATTT 58.684 42.857 0.00 0.00 0.00 2.17
1540 1546 1.995376 ACGAAAGGGTTGCTTGGATT 58.005 45.000 0.00 0.00 0.00 3.01
1541 1547 2.871096 TACGAAAGGGTTGCTTGGAT 57.129 45.000 0.00 0.00 0.00 3.41
1542 1548 2.642154 TTACGAAAGGGTTGCTTGGA 57.358 45.000 0.00 0.00 0.00 3.53
1543 1549 3.366985 GGATTTACGAAAGGGTTGCTTGG 60.367 47.826 0.00 0.00 0.00 3.61
1544 1550 3.254657 TGGATTTACGAAAGGGTTGCTTG 59.745 43.478 0.00 0.00 0.00 4.01
1545 1551 3.492337 TGGATTTACGAAAGGGTTGCTT 58.508 40.909 0.00 0.00 0.00 3.91
1546 1552 3.149005 TGGATTTACGAAAGGGTTGCT 57.851 42.857 0.00 0.00 0.00 3.91
1547 1553 3.833442 CTTGGATTTACGAAAGGGTTGC 58.167 45.455 0.00 0.00 0.00 4.17
1548 1554 3.254657 TGCTTGGATTTACGAAAGGGTTG 59.745 43.478 0.00 0.00 0.00 3.77
1549 1555 3.492337 TGCTTGGATTTACGAAAGGGTT 58.508 40.909 0.00 0.00 0.00 4.11
1550 1556 3.149005 TGCTTGGATTTACGAAAGGGT 57.851 42.857 0.00 0.00 0.00 4.34
1551 1557 4.022329 AGTTTGCTTGGATTTACGAAAGGG 60.022 41.667 0.00 0.00 0.00 3.95
1552 1558 5.121221 AGTTTGCTTGGATTTACGAAAGG 57.879 39.130 0.00 0.00 0.00 3.11
1553 1559 7.463469 AAAAGTTTGCTTGGATTTACGAAAG 57.537 32.000 0.00 0.00 34.71 2.62
1554 1560 6.197468 CGAAAAGTTTGCTTGGATTTACGAAA 59.803 34.615 0.00 0.00 34.71 3.46
1555 1561 5.683743 CGAAAAGTTTGCTTGGATTTACGAA 59.316 36.000 0.00 0.00 34.71 3.85
1556 1562 5.209240 CGAAAAGTTTGCTTGGATTTACGA 58.791 37.500 0.00 0.00 34.71 3.43
1557 1563 4.973663 ACGAAAAGTTTGCTTGGATTTACG 59.026 37.500 0.00 0.00 34.71 3.18
1558 1564 7.917720 TTACGAAAAGTTTGCTTGGATTTAC 57.082 32.000 0.00 0.00 34.71 2.01
1559 1565 9.535878 AATTTACGAAAAGTTTGCTTGGATTTA 57.464 25.926 0.00 0.00 34.71 1.40
1560 1566 8.432110 AATTTACGAAAAGTTTGCTTGGATTT 57.568 26.923 0.00 0.00 34.71 2.17
1561 1567 7.708752 TGAATTTACGAAAAGTTTGCTTGGATT 59.291 29.630 0.00 0.00 34.71 3.01
1562 1568 7.206687 TGAATTTACGAAAAGTTTGCTTGGAT 58.793 30.769 0.00 0.00 34.71 3.41
1563 1569 6.565234 TGAATTTACGAAAAGTTTGCTTGGA 58.435 32.000 0.00 0.00 34.71 3.53
1564 1570 6.820470 TGAATTTACGAAAAGTTTGCTTGG 57.180 33.333 0.00 0.00 34.71 3.61
1565 1571 6.840789 GCTTGAATTTACGAAAAGTTTGCTTG 59.159 34.615 0.00 0.00 34.71 4.01
1566 1572 6.533367 TGCTTGAATTTACGAAAAGTTTGCTT 59.467 30.769 0.00 0.00 36.30 3.91
1567 1573 6.039616 TGCTTGAATTTACGAAAAGTTTGCT 58.960 32.000 0.00 0.00 0.00 3.91
1568 1574 6.267500 TGCTTGAATTTACGAAAAGTTTGC 57.733 33.333 0.00 0.00 0.00 3.68
1569 1575 7.010091 AGGTTGCTTGAATTTACGAAAAGTTTG 59.990 33.333 0.00 0.00 0.00 2.93
1570 1576 7.039270 AGGTTGCTTGAATTTACGAAAAGTTT 58.961 30.769 0.00 0.00 0.00 2.66
1571 1577 6.569780 AGGTTGCTTGAATTTACGAAAAGTT 58.430 32.000 0.00 0.00 0.00 2.66
1572 1578 6.144078 AGGTTGCTTGAATTTACGAAAAGT 57.856 33.333 0.00 0.00 0.00 2.66
1573 1579 7.463469 AAAGGTTGCTTGAATTTACGAAAAG 57.537 32.000 0.00 0.00 0.00 2.27
1574 1580 7.253817 CGAAAAGGTTGCTTGAATTTACGAAAA 60.254 33.333 0.00 0.00 0.00 2.29
1575 1581 6.197468 CGAAAAGGTTGCTTGAATTTACGAAA 59.803 34.615 0.00 0.00 0.00 3.46
1576 1582 5.683743 CGAAAAGGTTGCTTGAATTTACGAA 59.316 36.000 0.00 0.00 0.00 3.85
1577 1583 5.209240 CGAAAAGGTTGCTTGAATTTACGA 58.791 37.500 0.00 0.00 0.00 3.43
1578 1584 4.973663 ACGAAAAGGTTGCTTGAATTTACG 59.026 37.500 0.00 0.00 0.00 3.18
1579 1585 7.917720 TTACGAAAAGGTTGCTTGAATTTAC 57.082 32.000 0.00 0.00 0.00 2.01
1580 1586 9.187455 GATTTACGAAAAGGTTGCTTGAATTTA 57.813 29.630 0.00 0.00 0.00 1.40
1581 1587 7.926018 AGATTTACGAAAAGGTTGCTTGAATTT 59.074 29.630 0.00 0.00 0.00 1.82
1582 1588 7.433680 AGATTTACGAAAAGGTTGCTTGAATT 58.566 30.769 0.00 0.00 0.00 2.17
1583 1589 6.981722 AGATTTACGAAAAGGTTGCTTGAAT 58.018 32.000 0.00 0.00 0.00 2.57
1584 1590 6.385649 AGATTTACGAAAAGGTTGCTTGAA 57.614 33.333 0.00 0.00 0.00 2.69
1585 1591 7.499321 TTAGATTTACGAAAAGGTTGCTTGA 57.501 32.000 0.00 0.00 0.00 3.02
1586 1592 7.646130 TGTTTAGATTTACGAAAAGGTTGCTTG 59.354 33.333 0.00 0.00 0.00 4.01
1587 1593 7.708998 TGTTTAGATTTACGAAAAGGTTGCTT 58.291 30.769 0.00 0.00 0.00 3.91
1588 1594 7.266922 TGTTTAGATTTACGAAAAGGTTGCT 57.733 32.000 0.00 0.00 0.00 3.91
1589 1595 7.096353 GGTTGTTTAGATTTACGAAAAGGTTGC 60.096 37.037 0.00 0.00 0.00 4.17
1590 1596 8.132995 AGGTTGTTTAGATTTACGAAAAGGTTG 58.867 33.333 0.00 0.00 0.00 3.77
1591 1597 8.229253 AGGTTGTTTAGATTTACGAAAAGGTT 57.771 30.769 0.00 0.00 0.00 3.50
1592 1598 7.812690 AGGTTGTTTAGATTTACGAAAAGGT 57.187 32.000 0.00 0.00 0.00 3.50
1593 1599 9.524106 AAAAGGTTGTTTAGATTTACGAAAAGG 57.476 29.630 0.00 0.00 0.00 3.11
1595 1601 9.224058 CGAAAAGGTTGTTTAGATTTACGAAAA 57.776 29.630 0.00 0.00 0.00 2.29
1596 1602 8.397148 ACGAAAAGGTTGTTTAGATTTACGAAA 58.603 29.630 0.00 0.00 0.00 3.46
1597 1603 7.918643 ACGAAAAGGTTGTTTAGATTTACGAA 58.081 30.769 0.00 0.00 0.00 3.85
1598 1604 7.481275 ACGAAAAGGTTGTTTAGATTTACGA 57.519 32.000 0.00 0.00 0.00 3.43
1599 1605 7.953710 CCTACGAAAAGGTTGTTTAGATTTACG 59.046 37.037 0.00 0.00 31.46 3.18
1600 1606 7.747799 GCCTACGAAAAGGTTGTTTAGATTTAC 59.252 37.037 0.00 0.00 39.02 2.01
1601 1607 7.360269 CGCCTACGAAAAGGTTGTTTAGATTTA 60.360 37.037 0.00 0.00 43.93 1.40
1602 1608 6.567132 CGCCTACGAAAAGGTTGTTTAGATTT 60.567 38.462 0.00 0.00 43.93 2.17
1603 1609 5.106830 CGCCTACGAAAAGGTTGTTTAGATT 60.107 40.000 0.00 0.00 43.93 2.40
1604 1610 4.390909 CGCCTACGAAAAGGTTGTTTAGAT 59.609 41.667 0.00 0.00 43.93 1.98
1605 1611 3.742369 CGCCTACGAAAAGGTTGTTTAGA 59.258 43.478 0.00 0.00 43.93 2.10
1606 1612 3.495753 ACGCCTACGAAAAGGTTGTTTAG 59.504 43.478 0.00 0.00 43.93 1.85
1607 1613 3.465871 ACGCCTACGAAAAGGTTGTTTA 58.534 40.909 0.00 0.00 43.93 2.01
1608 1614 2.288729 GACGCCTACGAAAAGGTTGTTT 59.711 45.455 0.00 0.00 43.93 2.83
1609 1615 1.869132 GACGCCTACGAAAAGGTTGTT 59.131 47.619 0.00 0.00 43.93 2.83
1610 1616 1.505425 GACGCCTACGAAAAGGTTGT 58.495 50.000 0.00 0.00 43.93 3.32
1611 1617 0.794473 GGACGCCTACGAAAAGGTTG 59.206 55.000 0.00 0.00 43.93 3.77
1612 1618 0.683412 AGGACGCCTACGAAAAGGTT 59.317 50.000 0.00 0.00 43.93 3.50
1613 1619 0.245813 GAGGACGCCTACGAAAAGGT 59.754 55.000 0.00 0.00 43.93 3.50
1614 1620 0.801067 CGAGGACGCCTACGAAAAGG 60.801 60.000 0.00 0.00 43.93 3.11
1615 1621 0.801067 CCGAGGACGCCTACGAAAAG 60.801 60.000 14.29 0.00 43.93 2.27
1616 1622 1.213537 CCGAGGACGCCTACGAAAA 59.786 57.895 14.29 0.00 43.93 2.29
1617 1623 1.033746 ATCCGAGGACGCCTACGAAA 61.034 55.000 14.29 7.00 43.93 3.46
1618 1624 1.033746 AATCCGAGGACGCCTACGAA 61.034 55.000 14.29 1.49 43.93 3.85
1619 1625 1.452651 AATCCGAGGACGCCTACGA 60.453 57.895 14.29 7.58 43.93 3.43
1621 1627 1.067582 CCAATCCGAGGACGCCTAC 59.932 63.158 0.00 0.00 38.29 3.18
1622 1628 2.792947 GCCAATCCGAGGACGCCTA 61.793 63.158 0.00 0.00 38.29 3.93
1623 1629 4.162690 GCCAATCCGAGGACGCCT 62.163 66.667 0.00 0.00 38.29 5.52
1633 1639 2.432123 GATCTCCCGGGCCAATCC 59.568 66.667 18.49 0.00 0.00 3.01
1634 1640 2.031163 CGATCTCCCGGGCCAATC 59.969 66.667 18.49 16.69 0.00 2.67
1635 1641 1.418908 ATTCGATCTCCCGGGCCAAT 61.419 55.000 18.49 8.89 0.00 3.16
1636 1642 1.632018 AATTCGATCTCCCGGGCCAA 61.632 55.000 18.49 3.17 0.00 4.52
1637 1643 2.070039 AATTCGATCTCCCGGGCCA 61.070 57.895 18.49 4.20 0.00 5.36
1638 1644 1.598130 CAATTCGATCTCCCGGGCC 60.598 63.158 18.49 3.59 0.00 5.80
1639 1645 0.035458 ATCAATTCGATCTCCCGGGC 59.965 55.000 18.49 0.00 0.00 6.13
1640 1646 2.550830 AATCAATTCGATCTCCCGGG 57.449 50.000 16.85 16.85 31.11 5.73
1641 1647 6.208988 TCTATAATCAATTCGATCTCCCGG 57.791 41.667 0.00 0.00 31.11 5.73
1642 1648 7.598869 TGTTTCTATAATCAATTCGATCTCCCG 59.401 37.037 0.00 0.00 31.11 5.14
1643 1649 8.833231 TGTTTCTATAATCAATTCGATCTCCC 57.167 34.615 0.00 0.00 31.11 4.30
2138 2145 1.908619 GGTTCATGGCCAAGGGAAAAT 59.091 47.619 10.96 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.