Multiple sequence alignment - TraesCS1D01G434900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G434900 chr1D 100.000 2860 0 0 1 2860 483894502 483897361 0.000000e+00 5282.0
1 TraesCS1D01G434900 chr1D 85.630 675 74 15 1253 1908 483902185 483902855 0.000000e+00 688.0
2 TraesCS1D01G434900 chr1D 83.413 627 64 19 1253 1858 483680882 483681489 1.940000e-151 545.0
3 TraesCS1D01G434900 chr1D 83.333 630 62 15 1253 1858 483865321 483865931 2.510000e-150 542.0
4 TraesCS1D01G434900 chr1D 86.199 413 39 11 832 1230 483864975 483865383 5.660000e-117 431.0
5 TraesCS1D01G434900 chr1D 84.798 421 39 13 832 1230 483680527 483680944 1.600000e-107 399.0
6 TraesCS1D01G434900 chr1A 95.429 897 25 6 945 1827 580893338 580894232 0.000000e+00 1415.0
7 TraesCS1D01G434900 chr1A 97.059 442 9 2 1823 2264 580899109 580899546 0.000000e+00 741.0
8 TraesCS1D01G434900 chr1A 83.210 673 93 14 1253 1908 580925614 580926283 1.470000e-167 599.0
9 TraesCS1D01G434900 chr1A 86.207 580 39 12 336 897 580892782 580893338 8.830000e-165 590.0
10 TraesCS1D01G434900 chr1A 90.608 181 17 0 2433 2613 580901235 580901415 1.020000e-59 241.0
11 TraesCS1D01G434900 chr1A 95.556 90 4 0 2610 2699 580913073 580913162 8.260000e-31 145.0
12 TraesCS1D01G434900 chr1A 88.406 69 7 1 2149 2217 500869446 500869379 6.570000e-12 82.4
13 TraesCS1D01G434900 chr1B 84.384 666 71 20 1253 1892 673893387 673894045 8.700000e-175 623.0
14 TraesCS1D01G434900 chr1B 82.938 674 93 13 1253 1908 673889433 673890102 3.170000e-164 588.0
15 TraesCS1D01G434900 chr1B 82.698 630 84 17 1300 1908 673926153 673926778 1.170000e-148 536.0
16 TraesCS1D01G434900 chr1B 81.319 637 68 22 1253 1858 673855689 673856305 1.200000e-128 470.0
17 TraesCS1D01G434900 chr1B 89.809 157 16 0 2425 2581 304385159 304385315 4.830000e-48 202.0
18 TraesCS1D01G434900 chr1B 91.753 97 7 1 713 808 673855181 673855277 1.790000e-27 134.0
19 TraesCS1D01G434900 chr5D 91.257 183 15 1 2444 2626 537693156 537692975 6.120000e-62 248.0
20 TraesCS1D01G434900 chr5D 93.631 157 10 0 2425 2581 537693295 537693139 4.760000e-58 235.0
21 TraesCS1D01G434900 chr5D 91.912 136 11 0 2717 2852 537692669 537692534 1.050000e-44 191.0
22 TraesCS1D01G434900 chr5D 80.738 244 43 4 2611 2852 43002683 43002924 1.350000e-43 187.0
23 TraesCS1D01G434900 chr5B 89.506 162 15 2 2414 2575 655805413 655805572 1.340000e-48 204.0
24 TraesCS1D01G434900 chr5B 89.706 68 4 3 2146 2211 641670422 641670356 1.830000e-12 84.2
25 TraesCS1D01G434900 chr6A 90.323 155 14 1 2422 2575 495443600 495443754 4.830000e-48 202.0
26 TraesCS1D01G434900 chr7A 89.744 156 16 0 2420 2575 693454189 693454344 1.740000e-47 200.0
27 TraesCS1D01G434900 chr7A 93.333 45 3 0 296 340 496822490 496822446 1.840000e-07 67.6
28 TraesCS1D01G434900 chr2A 89.744 156 16 0 2420 2575 29834106 29834261 1.740000e-47 200.0
29 TraesCS1D01G434900 chr2A 89.744 156 16 0 2420 2575 29857841 29857996 1.740000e-47 200.0
30 TraesCS1D01G434900 chr2A 80.669 269 42 5 2592 2852 93933405 93933671 1.740000e-47 200.0
31 TraesCS1D01G434900 chr2A 89.796 49 5 0 291 339 333733556 333733508 2.380000e-06 63.9
32 TraesCS1D01G434900 chr7B 80.377 265 46 5 2587 2850 591526635 591526376 2.250000e-46 196.0
33 TraesCS1D01G434900 chr7B 80.000 255 43 6 2587 2839 591672071 591671823 6.290000e-42 182.0
34 TraesCS1D01G434900 chr7B 90.000 50 5 0 290 339 477814977 477814928 6.610000e-07 65.8
35 TraesCS1D01G434900 chrUn 79.508 244 33 8 2612 2852 144752150 144751921 1.060000e-34 158.0
36 TraesCS1D01G434900 chrUn 79.508 244 33 8 2612 2852 144789219 144788990 1.060000e-34 158.0
37 TraesCS1D01G434900 chrUn 79.424 243 34 7 2612 2852 144821529 144821301 1.060000e-34 158.0
38 TraesCS1D01G434900 chrUn 78.862 246 31 12 2612 2852 144862272 144862043 2.300000e-31 147.0
39 TraesCS1D01G434900 chrUn 78.862 246 31 12 2612 2852 144904108 144903879 2.300000e-31 147.0
40 TraesCS1D01G434900 chr4B 93.333 45 3 0 295 339 366930145 366930189 1.840000e-07 67.6
41 TraesCS1D01G434900 chr2D 93.333 45 3 0 295 339 410600670 410600714 1.840000e-07 67.6
42 TraesCS1D01G434900 chr3D 93.023 43 3 0 297 339 441388820 441388778 2.380000e-06 63.9
43 TraesCS1D01G434900 chr3D 88.679 53 2 3 287 339 170552098 170552146 8.560000e-06 62.1
44 TraesCS1D01G434900 chr3A 89.796 49 5 0 291 339 602017891 602017843 2.380000e-06 63.9
45 TraesCS1D01G434900 chr6D 89.796 49 4 1 291 339 340466845 340466798 8.560000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G434900 chr1D 483894502 483897361 2859 False 5282.000000 5282 100.000000 1 2860 1 chr1D.!!$F1 2859
1 TraesCS1D01G434900 chr1D 483902185 483902855 670 False 688.000000 688 85.630000 1253 1908 1 chr1D.!!$F2 655
2 TraesCS1D01G434900 chr1D 483864975 483865931 956 False 486.500000 542 84.766000 832 1858 2 chr1D.!!$F4 1026
3 TraesCS1D01G434900 chr1D 483680527 483681489 962 False 472.000000 545 84.105500 832 1858 2 chr1D.!!$F3 1026
4 TraesCS1D01G434900 chr1A 580892782 580894232 1450 False 1002.500000 1415 90.818000 336 1827 2 chr1A.!!$F3 1491
5 TraesCS1D01G434900 chr1A 580925614 580926283 669 False 599.000000 599 83.210000 1253 1908 1 chr1A.!!$F2 655
6 TraesCS1D01G434900 chr1A 580899109 580901415 2306 False 491.000000 741 93.833500 1823 2613 2 chr1A.!!$F4 790
7 TraesCS1D01G434900 chr1B 673889433 673894045 4612 False 605.500000 623 83.661000 1253 1908 2 chr1B.!!$F4 655
8 TraesCS1D01G434900 chr1B 673926153 673926778 625 False 536.000000 536 82.698000 1300 1908 1 chr1B.!!$F2 608
9 TraesCS1D01G434900 chr1B 673855181 673856305 1124 False 302.000000 470 86.536000 713 1858 2 chr1B.!!$F3 1145
10 TraesCS1D01G434900 chr5D 537692534 537693295 761 True 224.666667 248 92.266667 2425 2852 3 chr5D.!!$R1 427

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
137 138 0.035343 GCCCCTACACTTTCCACCTC 60.035 60.0 0.0 0.0 0.00 3.85 F
163 164 0.320421 ATTCCGCTTGTGCAGTACGT 60.320 50.0 0.0 0.0 39.64 3.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1493 5546 0.163788 CGAGAACACCGTGATGTTGC 59.836 55.0 5.28 0.0 42.89 4.17 R
1915 6015 6.774673 TCCACTAAACATCCAAGTAATCACA 58.225 36.0 0.00 0.0 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.497103 ATCGAAATGATGGCATCCTCA 57.503 42.857 23.92 8.43 35.45 3.86
39 40 3.280197 TCGAAATGATGGCATCCTCAA 57.720 42.857 23.92 6.36 32.35 3.02
40 41 3.619419 TCGAAATGATGGCATCCTCAAA 58.381 40.909 23.92 5.97 32.35 2.69
41 42 4.209538 TCGAAATGATGGCATCCTCAAAT 58.790 39.130 23.92 8.15 32.35 2.32
42 43 5.375773 TCGAAATGATGGCATCCTCAAATA 58.624 37.500 23.92 4.45 32.35 1.40
43 44 5.827267 TCGAAATGATGGCATCCTCAAATAA 59.173 36.000 23.92 3.69 32.35 1.40
44 45 6.320926 TCGAAATGATGGCATCCTCAAATAAA 59.679 34.615 23.92 2.95 32.35 1.40
45 46 6.979817 CGAAATGATGGCATCCTCAAATAAAA 59.020 34.615 23.92 2.19 32.35 1.52
46 47 7.654520 CGAAATGATGGCATCCTCAAATAAAAT 59.345 33.333 23.92 4.55 32.35 1.82
47 48 8.671384 AAATGATGGCATCCTCAAATAAAATG 57.329 30.769 23.92 0.00 32.35 2.32
48 49 5.603596 TGATGGCATCCTCAAATAAAATGC 58.396 37.500 23.92 0.00 41.49 3.56
49 50 5.128991 TGATGGCATCCTCAAATAAAATGCA 59.871 36.000 23.92 0.00 43.46 3.96
50 51 4.757594 TGGCATCCTCAAATAAAATGCAC 58.242 39.130 7.80 0.00 43.46 4.57
51 52 3.798337 GGCATCCTCAAATAAAATGCACG 59.202 43.478 7.80 0.00 43.46 5.34
52 53 4.423732 GCATCCTCAAATAAAATGCACGT 58.576 39.130 0.00 0.00 41.75 4.49
53 54 4.864247 GCATCCTCAAATAAAATGCACGTT 59.136 37.500 0.00 0.00 41.75 3.99
54 55 5.220265 GCATCCTCAAATAAAATGCACGTTG 60.220 40.000 0.00 0.00 41.75 4.10
55 56 5.697473 TCCTCAAATAAAATGCACGTTGA 57.303 34.783 0.00 0.00 0.00 3.18
56 57 5.698832 TCCTCAAATAAAATGCACGTTGAG 58.301 37.500 12.42 12.42 40.93 3.02
57 58 5.471797 TCCTCAAATAAAATGCACGTTGAGA 59.528 36.000 17.55 7.24 42.87 3.27
58 59 6.016693 TCCTCAAATAAAATGCACGTTGAGAA 60.017 34.615 17.55 2.61 42.87 2.87
59 60 6.640499 CCTCAAATAAAATGCACGTTGAGAAA 59.360 34.615 17.55 0.00 42.87 2.52
60 61 7.148918 CCTCAAATAAAATGCACGTTGAGAAAG 60.149 37.037 17.55 4.87 42.87 2.62
61 62 7.199766 TCAAATAAAATGCACGTTGAGAAAGT 58.800 30.769 0.00 0.00 0.00 2.66
62 63 8.346300 TCAAATAAAATGCACGTTGAGAAAGTA 58.654 29.630 0.00 0.00 0.00 2.24
63 64 8.963130 CAAATAAAATGCACGTTGAGAAAGTAA 58.037 29.630 0.00 0.00 0.00 2.24
64 65 9.691362 AAATAAAATGCACGTTGAGAAAGTAAT 57.309 25.926 0.00 0.00 0.00 1.89
66 67 9.769093 ATAAAATGCACGTTGAGAAAGTAATAC 57.231 29.630 0.00 0.00 0.00 1.89
67 68 6.795098 AATGCACGTTGAGAAAGTAATACA 57.205 33.333 0.00 0.00 0.00 2.29
68 69 6.985188 ATGCACGTTGAGAAAGTAATACAT 57.015 33.333 0.00 0.00 0.00 2.29
69 70 6.795098 TGCACGTTGAGAAAGTAATACATT 57.205 33.333 0.00 0.00 0.00 2.71
70 71 7.892778 TGCACGTTGAGAAAGTAATACATTA 57.107 32.000 0.00 0.00 0.00 1.90
71 72 8.487313 TGCACGTTGAGAAAGTAATACATTAT 57.513 30.769 0.00 0.00 0.00 1.28
72 73 8.600625 TGCACGTTGAGAAAGTAATACATTATC 58.399 33.333 0.00 0.00 0.00 1.75
73 74 8.818057 GCACGTTGAGAAAGTAATACATTATCT 58.182 33.333 4.94 0.00 0.00 1.98
75 76 8.818057 ACGTTGAGAAAGTAATACATTATCTGC 58.182 33.333 4.94 0.00 0.00 4.26
76 77 8.817100 CGTTGAGAAAGTAATACATTATCTGCA 58.183 33.333 4.94 0.00 0.00 4.41
77 78 9.922305 GTTGAGAAAGTAATACATTATCTGCAC 57.078 33.333 4.94 0.00 0.00 4.57
78 79 9.890629 TTGAGAAAGTAATACATTATCTGCACT 57.109 29.630 4.94 0.00 0.00 4.40
85 86 9.811995 AGTAATACATTATCTGCACTAAAACGA 57.188 29.630 0.00 0.00 0.00 3.85
86 87 9.845305 GTAATACATTATCTGCACTAAAACGAC 57.155 33.333 0.00 0.00 0.00 4.34
87 88 5.450376 ACATTATCTGCACTAAAACGACG 57.550 39.130 0.00 0.00 0.00 5.12
88 89 4.927425 ACATTATCTGCACTAAAACGACGT 59.073 37.500 0.00 0.00 0.00 4.34
89 90 5.407387 ACATTATCTGCACTAAAACGACGTT 59.593 36.000 7.57 7.57 0.00 3.99
90 91 6.587226 ACATTATCTGCACTAAAACGACGTTA 59.413 34.615 14.59 0.00 0.00 3.18
91 92 7.116662 ACATTATCTGCACTAAAACGACGTTAA 59.883 33.333 14.59 4.62 0.00 2.01
92 93 5.910637 ATCTGCACTAAAACGACGTTAAA 57.089 34.783 14.59 4.25 0.00 1.52
93 94 5.910637 TCTGCACTAAAACGACGTTAAAT 57.089 34.783 14.59 6.27 0.00 1.40
94 95 6.289745 TCTGCACTAAAACGACGTTAAATT 57.710 33.333 14.59 7.49 0.00 1.82
95 96 6.717413 TCTGCACTAAAACGACGTTAAATTT 58.283 32.000 14.59 7.12 0.00 1.82
96 97 7.849496 TCTGCACTAAAACGACGTTAAATTTA 58.151 30.769 14.59 7.92 0.00 1.40
97 98 8.497554 TCTGCACTAAAACGACGTTAAATTTAT 58.502 29.630 14.59 0.00 0.00 1.40
98 99 9.109533 CTGCACTAAAACGACGTTAAATTTATT 57.890 29.630 14.59 5.27 0.00 1.40
99 100 9.105206 TGCACTAAAACGACGTTAAATTTATTC 57.895 29.630 14.59 2.54 0.00 1.75
100 101 9.105206 GCACTAAAACGACGTTAAATTTATTCA 57.895 29.630 14.59 0.00 0.00 2.57
120 121 9.856488 TTATTCATAGAAGAGTATACGAATGCC 57.144 33.333 0.00 0.00 0.00 4.40
121 122 6.268825 TCATAGAAGAGTATACGAATGCCC 57.731 41.667 0.00 0.00 0.00 5.36
122 123 5.185249 TCATAGAAGAGTATACGAATGCCCC 59.815 44.000 0.00 0.00 0.00 5.80
123 124 3.577919 AGAAGAGTATACGAATGCCCCT 58.422 45.455 0.00 0.00 0.00 4.79
124 125 4.737578 AGAAGAGTATACGAATGCCCCTA 58.262 43.478 0.00 0.00 0.00 3.53
125 126 4.523558 AGAAGAGTATACGAATGCCCCTAC 59.476 45.833 0.00 0.00 0.00 3.18
126 127 3.840991 AGAGTATACGAATGCCCCTACA 58.159 45.455 0.00 0.00 0.00 2.74
127 128 3.573110 AGAGTATACGAATGCCCCTACAC 59.427 47.826 0.00 0.00 0.00 2.90
128 129 3.573110 GAGTATACGAATGCCCCTACACT 59.427 47.826 0.00 0.00 0.00 3.55
129 130 3.965347 AGTATACGAATGCCCCTACACTT 59.035 43.478 0.00 0.00 0.00 3.16
130 131 3.926058 ATACGAATGCCCCTACACTTT 57.074 42.857 0.00 0.00 0.00 2.66
131 132 2.109425 ACGAATGCCCCTACACTTTC 57.891 50.000 0.00 0.00 0.00 2.62
132 133 1.339727 ACGAATGCCCCTACACTTTCC 60.340 52.381 0.00 0.00 0.00 3.13
133 134 1.339631 CGAATGCCCCTACACTTTCCA 60.340 52.381 0.00 0.00 0.00 3.53
134 135 2.092323 GAATGCCCCTACACTTTCCAC 58.908 52.381 0.00 0.00 0.00 4.02
135 136 0.331616 ATGCCCCTACACTTTCCACC 59.668 55.000 0.00 0.00 0.00 4.61
136 137 0.770557 TGCCCCTACACTTTCCACCT 60.771 55.000 0.00 0.00 0.00 4.00
137 138 0.035343 GCCCCTACACTTTCCACCTC 60.035 60.000 0.00 0.00 0.00 3.85
138 139 0.618981 CCCCTACACTTTCCACCTCC 59.381 60.000 0.00 0.00 0.00 4.30
139 140 1.358152 CCCTACACTTTCCACCTCCA 58.642 55.000 0.00 0.00 0.00 3.86
140 141 1.702957 CCCTACACTTTCCACCTCCAA 59.297 52.381 0.00 0.00 0.00 3.53
141 142 2.107552 CCCTACACTTTCCACCTCCAAA 59.892 50.000 0.00 0.00 0.00 3.28
142 143 3.412386 CCTACACTTTCCACCTCCAAAG 58.588 50.000 0.00 0.00 35.97 2.77
143 144 3.072476 CCTACACTTTCCACCTCCAAAGA 59.928 47.826 0.00 0.00 34.30 2.52
144 145 3.662759 ACACTTTCCACCTCCAAAGAA 57.337 42.857 0.00 0.00 34.30 2.52
145 146 4.184649 ACACTTTCCACCTCCAAAGAAT 57.815 40.909 0.00 0.00 34.30 2.40
146 147 4.546674 ACACTTTCCACCTCCAAAGAATT 58.453 39.130 0.00 0.00 34.30 2.17
147 148 4.584743 ACACTTTCCACCTCCAAAGAATTC 59.415 41.667 0.00 0.00 34.30 2.17
148 149 4.021981 CACTTTCCACCTCCAAAGAATTCC 60.022 45.833 0.65 0.00 34.30 3.01
149 150 2.489938 TCCACCTCCAAAGAATTCCG 57.510 50.000 0.65 0.00 0.00 4.30
150 151 0.811281 CCACCTCCAAAGAATTCCGC 59.189 55.000 0.65 0.00 0.00 5.54
151 152 1.614317 CCACCTCCAAAGAATTCCGCT 60.614 52.381 0.65 0.00 0.00 5.52
152 153 2.162681 CACCTCCAAAGAATTCCGCTT 58.837 47.619 0.65 0.00 0.00 4.68
153 154 2.095059 CACCTCCAAAGAATTCCGCTTG 60.095 50.000 0.65 3.91 0.00 4.01
154 155 2.162681 CCTCCAAAGAATTCCGCTTGT 58.837 47.619 0.65 0.00 0.00 3.16
155 156 2.095059 CCTCCAAAGAATTCCGCTTGTG 60.095 50.000 0.65 0.00 0.00 3.33
156 157 1.269448 TCCAAAGAATTCCGCTTGTGC 59.731 47.619 0.65 0.00 0.00 4.57
157 158 1.000385 CCAAAGAATTCCGCTTGTGCA 60.000 47.619 0.65 0.00 39.64 4.57
158 159 2.322161 CAAAGAATTCCGCTTGTGCAG 58.678 47.619 0.65 0.00 39.64 4.41
159 160 1.609208 AAGAATTCCGCTTGTGCAGT 58.391 45.000 0.65 0.00 39.64 4.40
160 161 2.472695 AGAATTCCGCTTGTGCAGTA 57.527 45.000 0.65 0.00 39.64 2.74
161 162 2.076863 AGAATTCCGCTTGTGCAGTAC 58.923 47.619 0.65 0.00 39.64 2.73
162 163 0.796312 AATTCCGCTTGTGCAGTACG 59.204 50.000 0.00 0.00 39.64 3.67
163 164 0.320421 ATTCCGCTTGTGCAGTACGT 60.320 50.000 0.00 0.00 39.64 3.57
164 165 0.942410 TTCCGCTTGTGCAGTACGTC 60.942 55.000 0.00 0.00 39.64 4.34
165 166 1.372997 CCGCTTGTGCAGTACGTCT 60.373 57.895 0.00 0.00 39.64 4.18
166 167 0.944311 CCGCTTGTGCAGTACGTCTT 60.944 55.000 0.00 0.00 39.64 3.01
167 168 0.435008 CGCTTGTGCAGTACGTCTTC 59.565 55.000 0.00 0.00 39.64 2.87
168 169 0.790814 GCTTGTGCAGTACGTCTTCC 59.209 55.000 0.00 0.00 39.41 3.46
169 170 1.872237 GCTTGTGCAGTACGTCTTCCA 60.872 52.381 0.00 0.00 39.41 3.53
170 171 2.688507 CTTGTGCAGTACGTCTTCCAT 58.311 47.619 0.00 0.00 0.00 3.41
171 172 2.078849 TGTGCAGTACGTCTTCCATG 57.921 50.000 0.00 0.00 0.00 3.66
172 173 1.343142 TGTGCAGTACGTCTTCCATGT 59.657 47.619 0.00 0.00 0.00 3.21
173 174 2.224185 TGTGCAGTACGTCTTCCATGTT 60.224 45.455 0.00 0.00 0.00 2.71
174 175 2.806244 GTGCAGTACGTCTTCCATGTTT 59.194 45.455 0.00 0.00 0.00 2.83
175 176 3.064207 TGCAGTACGTCTTCCATGTTTC 58.936 45.455 0.00 0.00 0.00 2.78
176 177 3.064207 GCAGTACGTCTTCCATGTTTCA 58.936 45.455 0.00 0.00 0.00 2.69
177 178 3.496884 GCAGTACGTCTTCCATGTTTCAA 59.503 43.478 0.00 0.00 0.00 2.69
178 179 4.024387 GCAGTACGTCTTCCATGTTTCAAA 60.024 41.667 0.00 0.00 0.00 2.69
179 180 5.504994 GCAGTACGTCTTCCATGTTTCAAAA 60.505 40.000 0.00 0.00 0.00 2.44
180 181 6.136071 CAGTACGTCTTCCATGTTTCAAAAG 58.864 40.000 0.00 0.00 0.00 2.27
181 182 6.018262 CAGTACGTCTTCCATGTTTCAAAAGA 60.018 38.462 0.00 0.00 0.00 2.52
182 183 5.828299 ACGTCTTCCATGTTTCAAAAGAA 57.172 34.783 0.00 0.00 0.00 2.52
183 184 5.821204 ACGTCTTCCATGTTTCAAAAGAAG 58.179 37.500 0.00 0.00 33.51 2.85
184 185 5.588648 ACGTCTTCCATGTTTCAAAAGAAGA 59.411 36.000 0.00 0.00 37.87 2.87
185 186 6.094881 ACGTCTTCCATGTTTCAAAAGAAGAA 59.905 34.615 7.93 0.12 40.82 2.52
186 187 6.972328 CGTCTTCCATGTTTCAAAAGAAGAAA 59.028 34.615 7.93 0.00 40.82 2.52
187 188 7.649306 CGTCTTCCATGTTTCAAAAGAAGAAAT 59.351 33.333 7.93 0.00 40.82 2.17
188 189 9.317936 GTCTTCCATGTTTCAAAAGAAGAAATT 57.682 29.630 7.93 0.00 40.82 1.82
205 206 9.382275 AGAAGAAATTACAACAATTTTGCTTGT 57.618 25.926 12.50 12.50 41.01 3.16
206 207 9.424659 GAAGAAATTACAACAATTTTGCTTGTG 57.575 29.630 15.33 3.45 39.25 3.33
207 208 8.491331 AGAAATTACAACAATTTTGCTTGTGT 57.509 26.923 15.33 7.58 39.25 3.72
208 209 9.593134 AGAAATTACAACAATTTTGCTTGTGTA 57.407 25.926 15.33 6.91 39.25 2.90
209 210 9.848172 GAAATTACAACAATTTTGCTTGTGTAG 57.152 29.630 15.33 0.00 39.25 2.74
210 211 8.940768 AATTACAACAATTTTGCTTGTGTAGT 57.059 26.923 15.33 4.90 39.25 2.73
212 213 8.844441 TTACAACAATTTTGCTTGTGTAGTAC 57.156 30.769 15.33 0.00 39.25 2.73
213 214 6.857956 ACAACAATTTTGCTTGTGTAGTACA 58.142 32.000 0.00 0.00 39.25 2.90
230 231 8.360325 TGTAGTACACAAAACACTATCAACAG 57.640 34.615 0.00 0.00 32.95 3.16
231 232 7.982919 TGTAGTACACAAAACACTATCAACAGT 59.017 33.333 0.00 0.00 32.95 3.55
232 233 7.859325 AGTACACAAAACACTATCAACAGTT 57.141 32.000 0.00 0.00 0.00 3.16
233 234 7.693952 AGTACACAAAACACTATCAACAGTTG 58.306 34.615 6.99 6.99 0.00 3.16
234 235 5.339990 ACACAAAACACTATCAACAGTTGC 58.660 37.500 8.58 0.00 0.00 4.17
235 236 5.105957 ACACAAAACACTATCAACAGTTGCA 60.106 36.000 8.58 0.00 0.00 4.08
236 237 5.804473 CACAAAACACTATCAACAGTTGCAA 59.196 36.000 8.58 0.00 0.00 4.08
237 238 5.804979 ACAAAACACTATCAACAGTTGCAAC 59.195 36.000 22.17 22.17 0.00 4.17
238 239 5.574891 AAACACTATCAACAGTTGCAACA 57.425 34.783 30.11 10.66 0.00 3.33
239 240 5.574891 AACACTATCAACAGTTGCAACAA 57.425 34.783 30.11 11.09 0.00 2.83
240 241 4.920376 ACACTATCAACAGTTGCAACAAC 58.080 39.130 30.11 5.54 0.00 3.32
241 242 4.397730 ACACTATCAACAGTTGCAACAACA 59.602 37.500 30.11 10.34 0.00 3.33
242 243 5.105957 ACACTATCAACAGTTGCAACAACAA 60.106 36.000 30.11 12.46 0.00 2.83
243 244 5.804473 CACTATCAACAGTTGCAACAACAAA 59.196 36.000 30.11 13.50 0.00 2.83
244 245 6.309980 CACTATCAACAGTTGCAACAACAAAA 59.690 34.615 30.11 11.96 0.00 2.44
245 246 7.010367 CACTATCAACAGTTGCAACAACAAAAT 59.990 33.333 30.11 17.46 0.00 1.82
246 247 6.740411 ATCAACAGTTGCAACAACAAAATT 57.260 29.167 30.11 10.87 0.00 1.82
247 248 7.840342 ATCAACAGTTGCAACAACAAAATTA 57.160 28.000 30.11 7.71 0.00 1.40
248 249 7.288317 TCAACAGTTGCAACAACAAAATTAG 57.712 32.000 30.11 9.29 0.00 1.73
249 250 6.870965 TCAACAGTTGCAACAACAAAATTAGT 59.129 30.769 30.11 10.03 0.00 2.24
250 251 8.029522 TCAACAGTTGCAACAACAAAATTAGTA 58.970 29.630 30.11 0.83 0.00 1.82
251 252 8.816144 CAACAGTTGCAACAACAAAATTAGTAT 58.184 29.630 30.11 2.33 0.00 2.12
252 253 8.574196 ACAGTTGCAACAACAAAATTAGTATC 57.426 30.769 30.11 0.00 0.00 2.24
253 254 8.194104 ACAGTTGCAACAACAAAATTAGTATCA 58.806 29.630 30.11 0.00 0.00 2.15
254 255 9.195411 CAGTTGCAACAACAAAATTAGTATCAT 57.805 29.630 30.11 0.88 0.00 2.45
255 256 9.762933 AGTTGCAACAACAAAATTAGTATCATT 57.237 25.926 30.11 0.55 0.00 2.57
303 304 9.703892 TTCACGTTATACCTATCTACTACTCTC 57.296 37.037 0.00 0.00 0.00 3.20
304 305 9.087871 TCACGTTATACCTATCTACTACTCTCT 57.912 37.037 0.00 0.00 0.00 3.10
380 381 2.599408 AGAAGTGAACGGAGGGAGTA 57.401 50.000 0.00 0.00 0.00 2.59
381 382 2.448453 AGAAGTGAACGGAGGGAGTAG 58.552 52.381 0.00 0.00 0.00 2.57
382 383 2.169330 GAAGTGAACGGAGGGAGTAGT 58.831 52.381 0.00 0.00 0.00 2.73
383 384 3.009916 AGAAGTGAACGGAGGGAGTAGTA 59.990 47.826 0.00 0.00 0.00 1.82
384 385 2.720915 AGTGAACGGAGGGAGTAGTAC 58.279 52.381 0.00 0.00 0.00 2.73
385 386 2.308275 AGTGAACGGAGGGAGTAGTACT 59.692 50.000 1.37 1.37 0.00 2.73
386 387 2.422832 GTGAACGGAGGGAGTAGTACTG 59.577 54.545 7.76 0.00 0.00 2.74
387 388 2.040813 TGAACGGAGGGAGTAGTACTGT 59.959 50.000 7.76 0.00 0.00 3.55
388 389 3.264193 TGAACGGAGGGAGTAGTACTGTA 59.736 47.826 7.76 0.00 0.00 2.74
389 390 4.080129 TGAACGGAGGGAGTAGTACTGTAT 60.080 45.833 7.76 0.00 0.00 2.29
398 399 5.873164 GGGAGTAGTACTGTATTTGTTGGTG 59.127 44.000 7.76 0.00 0.00 4.17
453 458 5.116074 CGCATCATTTGACTTCAGACAAAAC 59.884 40.000 8.23 0.00 41.36 2.43
454 459 6.211515 GCATCATTTGACTTCAGACAAAACT 58.788 36.000 8.23 0.00 41.36 2.66
455 460 6.698766 GCATCATTTGACTTCAGACAAAACTT 59.301 34.615 8.23 0.00 41.36 2.66
456 461 7.306399 GCATCATTTGACTTCAGACAAAACTTG 60.306 37.037 8.23 7.34 41.36 3.16
458 463 8.275015 TCATTTGACTTCAGACAAAACTTGTA 57.725 30.769 8.23 0.00 45.52 2.41
461 466 4.033587 TGACTTCAGACAAAACTTGTACGC 59.966 41.667 0.00 0.00 45.52 4.42
470 475 6.094464 AGACAAAACTTGTACGCCTACTTTTT 59.906 34.615 0.00 0.00 45.52 1.94
476 481 3.468770 TGTACGCCTACTTTTTGAGCAA 58.531 40.909 0.00 0.00 0.00 3.91
483 488 4.278419 GCCTACTTTTTGAGCAAAGAGGAA 59.722 41.667 15.22 5.14 36.98 3.36
499 504 9.651718 GCAAAGAGGAAATATTATTCAACGTAG 57.348 33.333 0.00 0.00 0.00 3.51
506 511 8.403236 GGAAATATTATTCAACGTAGGCTTTGT 58.597 33.333 0.00 0.00 0.00 2.83
558 563 4.331968 TGATATTTTTCTCAACGGCCACT 58.668 39.130 2.24 0.00 0.00 4.00
580 585 1.008881 CGCTGCATGCATAGCTTGG 60.009 57.895 22.97 8.76 43.06 3.61
589 594 1.762370 TGCATAGCTTGGATTCTCCGA 59.238 47.619 0.00 0.00 40.17 4.55
598 603 2.266279 TGGATTCTCCGACCTTTTCCT 58.734 47.619 0.00 0.00 40.17 3.36
599 604 2.642807 TGGATTCTCCGACCTTTTCCTT 59.357 45.455 0.00 0.00 40.17 3.36
600 605 3.073946 TGGATTCTCCGACCTTTTCCTTT 59.926 43.478 0.00 0.00 40.17 3.11
601 606 3.690139 GGATTCTCCGACCTTTTCCTTTC 59.310 47.826 0.00 0.00 0.00 2.62
602 607 2.853235 TCTCCGACCTTTTCCTTTCC 57.147 50.000 0.00 0.00 0.00 3.13
603 608 2.335933 TCTCCGACCTTTTCCTTTCCT 58.664 47.619 0.00 0.00 0.00 3.36
604 609 2.709397 TCTCCGACCTTTTCCTTTCCTT 59.291 45.455 0.00 0.00 0.00 3.36
605 610 3.137728 TCTCCGACCTTTTCCTTTCCTTT 59.862 43.478 0.00 0.00 0.00 3.11
606 611 3.483421 TCCGACCTTTTCCTTTCCTTTC 58.517 45.455 0.00 0.00 0.00 2.62
607 612 2.557056 CCGACCTTTTCCTTTCCTTTCC 59.443 50.000 0.00 0.00 0.00 3.13
620 625 1.202486 TCCTTTCCCGTATCATCACGC 60.202 52.381 0.00 0.00 40.59 5.34
623 628 1.669049 TTCCCGTATCATCACGCCGT 61.669 55.000 0.00 0.00 40.59 5.68
624 629 1.227147 CCCGTATCATCACGCCGTT 60.227 57.895 0.00 0.00 40.59 4.44
641 646 1.319079 CGTTGTGCGGTTTGTGTTTTC 59.681 47.619 0.00 0.00 36.85 2.29
647 652 1.801025 GCGGTTTGTGTTTTCTGGGTG 60.801 52.381 0.00 0.00 0.00 4.61
648 653 1.202359 CGGTTTGTGTTTTCTGGGTGG 60.202 52.381 0.00 0.00 0.00 4.61
649 654 1.828595 GGTTTGTGTTTTCTGGGTGGT 59.171 47.619 0.00 0.00 0.00 4.16
671 676 5.124776 GGTTTTGGTGAACAATATCCGATGA 59.875 40.000 0.00 0.00 39.21 2.92
690 695 8.508875 TCCGATGAGTTCCAAATTTAAAAGTAC 58.491 33.333 0.00 0.00 0.00 2.73
691 696 8.293867 CCGATGAGTTCCAAATTTAAAAGTACA 58.706 33.333 0.00 0.00 0.00 2.90
692 697 9.672086 CGATGAGTTCCAAATTTAAAAGTACAA 57.328 29.630 0.00 0.00 0.00 2.41
746 764 5.065859 TCACCAATAGAATTATGCACCAACG 59.934 40.000 0.00 0.00 0.00 4.10
750 768 6.206634 CCAATAGAATTATGCACCAACGGTAT 59.793 38.462 0.00 0.00 32.11 2.73
795 813 3.784701 TTGAACGTCCAGCTCTATCTC 57.215 47.619 0.00 0.00 0.00 2.75
804 822 5.563867 CGTCCAGCTCTATCTCCATAAAGAC 60.564 48.000 0.00 0.00 0.00 3.01
916 996 2.232696 TCTCTAACGTACATTGCCAGCA 59.767 45.455 0.00 0.00 0.00 4.41
917 997 3.000041 CTCTAACGTACATTGCCAGCAA 59.000 45.455 7.64 7.64 40.47 3.91
921 1001 0.794229 CGTACATTGCCAGCAAAGCG 60.794 55.000 9.44 7.79 39.55 4.68
1112 1208 0.668535 GCCGCAAACCAAGAAGAAGT 59.331 50.000 0.00 0.00 0.00 3.01
1183 1279 2.947938 ATTGCCTCAGATTCCCGGCG 62.948 60.000 0.00 0.00 45.36 6.46
1229 1325 2.361230 CCTTTTCCCGCCACTCCC 60.361 66.667 0.00 0.00 0.00 4.30
1493 5546 0.179100 CCGTGCATGGACTACCTCAG 60.179 60.000 21.08 0.00 37.04 3.35
1955 6055 7.388500 TGTTTAGTGGATTCGTTTTAGTTAGGG 59.612 37.037 0.00 0.00 0.00 3.53
1956 6056 5.494390 AGTGGATTCGTTTTAGTTAGGGT 57.506 39.130 0.00 0.00 0.00 4.34
2023 6123 3.072211 CGGACGTCATATGTAGCTCCTA 58.928 50.000 18.91 0.00 0.00 2.94
2139 6239 7.224290 TCGATGCATGCTTTGATTTTATTTG 57.776 32.000 20.33 0.00 0.00 2.32
2145 6245 7.388224 TGCATGCTTTGATTTTATTTGTGTGAT 59.612 29.630 20.33 0.00 0.00 3.06
2146 6246 8.231837 GCATGCTTTGATTTTATTTGTGTGATT 58.768 29.630 11.37 0.00 0.00 2.57
2219 6319 7.283329 AGAAACCATCAAGTCTTGAAACTACT 58.717 34.615 18.93 11.20 43.95 2.57
2225 6325 7.329717 CCATCAAGTCTTGAAACTACTACAGAC 59.670 40.741 18.93 0.00 43.95 3.51
2264 6364 4.692625 AGGCAATAACGATGCATGATCTAC 59.307 41.667 2.46 0.00 45.60 2.59
2267 6367 5.122869 GCAATAACGATGCATGATCTACCAT 59.877 40.000 2.46 0.00 43.29 3.55
2268 6368 6.540205 CAATAACGATGCATGATCTACCATG 58.460 40.000 2.46 0.00 44.97 3.66
2269 6369 3.049708 ACGATGCATGATCTACCATGG 57.950 47.619 11.19 11.19 43.02 3.66
2271 6371 2.719739 GATGCATGATCTACCATGGGG 58.280 52.381 18.09 8.71 43.02 4.96
2273 6373 1.701292 TGCATGATCTACCATGGGGAG 59.299 52.381 18.09 13.04 43.02 4.30
2274 6374 1.004044 GCATGATCTACCATGGGGAGG 59.996 57.143 18.09 2.95 43.02 4.30
2277 6377 3.144068 TGATCTACCATGGGGAGGAAA 57.856 47.619 18.09 0.00 38.05 3.13
2278 6378 3.680169 TGATCTACCATGGGGAGGAAAT 58.320 45.455 18.09 2.70 38.05 2.17
2279 6379 3.395607 TGATCTACCATGGGGAGGAAATG 59.604 47.826 18.09 0.00 38.05 2.32
2281 6381 1.496429 CTACCATGGGGAGGAAATGCT 59.504 52.381 18.09 0.00 38.05 3.79
2282 6382 1.607225 ACCATGGGGAGGAAATGCTA 58.393 50.000 18.09 0.00 38.05 3.49
2284 6384 2.108952 ACCATGGGGAGGAAATGCTATC 59.891 50.000 18.09 0.00 38.05 2.08
2287 6387 1.494721 TGGGGAGGAAATGCTATCCAC 59.505 52.381 5.92 0.00 39.55 4.02
2288 6388 1.202940 GGGGAGGAAATGCTATCCACC 60.203 57.143 9.75 9.75 44.35 4.61
2289 6389 2.278332 GGAGGAAATGCTATCCACCC 57.722 55.000 7.80 4.36 40.62 4.61
2291 6391 0.853530 AGGAAATGCTATCCACCCCC 59.146 55.000 5.92 0.00 39.55 5.40
2312 6687 3.080641 CCCCCACACAGCAGATCA 58.919 61.111 0.00 0.00 0.00 2.92
2313 6688 1.377725 CCCCCACACAGCAGATCAC 60.378 63.158 0.00 0.00 0.00 3.06
2314 6689 1.377725 CCCCACACAGCAGATCACC 60.378 63.158 0.00 0.00 0.00 4.02
2315 6690 1.681666 CCCACACAGCAGATCACCT 59.318 57.895 0.00 0.00 0.00 4.00
2316 6691 0.904649 CCCACACAGCAGATCACCTA 59.095 55.000 0.00 0.00 0.00 3.08
2317 6692 1.278985 CCCACACAGCAGATCACCTAA 59.721 52.381 0.00 0.00 0.00 2.69
2318 6693 2.625737 CCACACAGCAGATCACCTAAG 58.374 52.381 0.00 0.00 0.00 2.18
2319 6694 2.625737 CACACAGCAGATCACCTAAGG 58.374 52.381 0.00 0.00 0.00 2.69
2320 6695 2.027745 CACACAGCAGATCACCTAAGGT 60.028 50.000 0.00 0.00 35.62 3.50
2321 6696 2.234908 ACACAGCAGATCACCTAAGGTC 59.765 50.000 0.00 0.00 31.02 3.85
2322 6697 1.834263 ACAGCAGATCACCTAAGGTCC 59.166 52.381 0.00 0.00 31.02 4.46
2324 6699 2.237143 CAGCAGATCACCTAAGGTCCAA 59.763 50.000 0.00 0.00 31.02 3.53
2325 6700 2.503356 AGCAGATCACCTAAGGTCCAAG 59.497 50.000 0.00 0.00 31.02 3.61
2328 6703 1.840635 GATCACCTAAGGTCCAAGCCT 59.159 52.381 0.00 0.00 41.41 4.58
2329 6704 0.984230 TCACCTAAGGTCCAAGCCTG 59.016 55.000 0.00 0.00 39.17 4.85
2330 6705 0.984230 CACCTAAGGTCCAAGCCTGA 59.016 55.000 0.00 0.00 39.17 3.86
2331 6706 1.065854 CACCTAAGGTCCAAGCCTGAG 60.066 57.143 0.00 0.00 39.17 3.35
2332 6707 1.203313 ACCTAAGGTCCAAGCCTGAGA 60.203 52.381 0.00 0.00 39.10 3.27
2333 6708 1.484240 CCTAAGGTCCAAGCCTGAGAG 59.516 57.143 0.00 0.00 39.10 3.20
2334 6709 2.461695 CTAAGGTCCAAGCCTGAGAGA 58.538 52.381 0.00 0.00 39.10 3.10
2335 6710 1.274712 AAGGTCCAAGCCTGAGAGAG 58.725 55.000 0.00 0.00 39.17 3.20
2338 6713 0.172352 GTCCAAGCCTGAGAGAGACG 59.828 60.000 0.00 0.00 0.00 4.18
2339 6714 0.038310 TCCAAGCCTGAGAGAGACGA 59.962 55.000 0.00 0.00 0.00 4.20
2340 6715 0.172352 CCAAGCCTGAGAGAGACGAC 59.828 60.000 0.00 0.00 0.00 4.34
2341 6716 1.173043 CAAGCCTGAGAGAGACGACT 58.827 55.000 0.00 0.00 0.00 4.18
2342 6717 1.132262 CAAGCCTGAGAGAGACGACTC 59.868 57.143 6.80 6.80 42.90 3.36
2343 6718 0.326595 AGCCTGAGAGAGACGACTCA 59.673 55.000 16.96 8.70 44.79 3.41
2345 6720 1.542030 GCCTGAGAGAGACGACTCAAA 59.458 52.381 16.96 0.00 44.79 2.69
2346 6721 2.029828 GCCTGAGAGAGACGACTCAAAA 60.030 50.000 16.96 0.00 44.79 2.44
2347 6722 3.570559 CCTGAGAGAGACGACTCAAAAC 58.429 50.000 16.96 6.16 44.79 2.43
2349 6724 2.956333 TGAGAGAGACGACTCAAAACCA 59.044 45.455 16.96 4.88 44.79 3.67
2350 6725 3.004839 TGAGAGAGACGACTCAAAACCAG 59.995 47.826 16.96 0.00 44.79 4.00
2353 6728 2.158957 AGAGACGACTCAAAACCAGCAA 60.159 45.455 16.96 0.00 44.79 3.91
2355 6730 0.655733 ACGACTCAAAACCAGCAACG 59.344 50.000 0.00 0.00 0.00 4.10
2356 6731 0.934496 CGACTCAAAACCAGCAACGA 59.066 50.000 0.00 0.00 0.00 3.85
2357 6732 1.329292 CGACTCAAAACCAGCAACGAA 59.671 47.619 0.00 0.00 0.00 3.85
2361 6736 3.243068 ACTCAAAACCAGCAACGAACATC 60.243 43.478 0.00 0.00 0.00 3.06
2362 6737 2.685388 TCAAAACCAGCAACGAACATCA 59.315 40.909 0.00 0.00 0.00 3.07
2363 6738 3.044986 CAAAACCAGCAACGAACATCAG 58.955 45.455 0.00 0.00 0.00 2.90
2365 6740 1.512926 ACCAGCAACGAACATCAGAC 58.487 50.000 0.00 0.00 0.00 3.51
2366 6741 1.070758 ACCAGCAACGAACATCAGACT 59.929 47.619 0.00 0.00 0.00 3.24
2367 6742 1.728971 CCAGCAACGAACATCAGACTC 59.271 52.381 0.00 0.00 0.00 3.36
2369 6744 1.344438 AGCAACGAACATCAGACTCCA 59.656 47.619 0.00 0.00 0.00 3.86
2371 6746 2.341257 CAACGAACATCAGACTCCAGG 58.659 52.381 0.00 0.00 0.00 4.45
2372 6747 1.633774 ACGAACATCAGACTCCAGGT 58.366 50.000 0.00 0.00 0.00 4.00
2373 6748 1.971357 ACGAACATCAGACTCCAGGTT 59.029 47.619 0.00 0.00 0.00 3.50
2374 6749 3.162666 ACGAACATCAGACTCCAGGTTA 58.837 45.455 0.00 0.00 0.00 2.85
2377 6828 2.526432 ACATCAGACTCCAGGTTACGT 58.474 47.619 0.00 0.00 0.00 3.57
2386 6837 7.066284 TCAGACTCCAGGTTACGTACTTAATAC 59.934 40.741 0.00 0.00 0.00 1.89
2388 6839 7.394359 AGACTCCAGGTTACGTACTTAATACAA 59.606 37.037 0.00 0.00 32.79 2.41
2389 6840 7.542025 ACTCCAGGTTACGTACTTAATACAAG 58.458 38.462 0.00 0.00 32.79 3.16
2390 6841 7.394359 ACTCCAGGTTACGTACTTAATACAAGA 59.606 37.037 0.00 0.00 32.79 3.02
2391 6842 7.765307 TCCAGGTTACGTACTTAATACAAGAG 58.235 38.462 0.00 0.00 32.79 2.85
2392 6843 7.394359 TCCAGGTTACGTACTTAATACAAGAGT 59.606 37.037 0.00 0.00 32.79 3.24
2502 8122 4.647424 ACTTCGAAACTGCATTTTTGGA 57.353 36.364 14.78 7.16 0.00 3.53
2523 8263 7.391148 TGGATTCTAAAACTATTGAAGGTGC 57.609 36.000 0.00 0.00 0.00 5.01
2585 8325 2.171870 TCTAAAACTATTGGAGGGGCCG 59.828 50.000 0.00 0.00 40.66 6.13
2626 8366 3.971894 GGGGATGTCGTCCTCCAT 58.028 61.111 10.99 0.00 46.91 3.41
2627 8367 1.447643 GGGGATGTCGTCCTCCATG 59.552 63.158 10.99 0.00 46.91 3.66
2628 8368 1.227674 GGGATGTCGTCCTCCATGC 60.228 63.158 10.99 0.00 46.91 4.06
2629 8369 1.227674 GGATGTCGTCCTCCATGCC 60.228 63.158 3.60 0.00 44.16 4.40
2630 8370 1.592669 GATGTCGTCCTCCATGCCG 60.593 63.158 0.00 0.00 0.00 5.69
2631 8371 2.016393 GATGTCGTCCTCCATGCCGA 62.016 60.000 0.00 0.00 0.00 5.54
2632 8372 2.202756 GTCGTCCTCCATGCCGAC 60.203 66.667 0.00 0.00 42.22 4.79
2633 8373 2.362503 TCGTCCTCCATGCCGACT 60.363 61.111 0.00 0.00 0.00 4.18
2634 8374 2.202797 CGTCCTCCATGCCGACTG 60.203 66.667 0.00 0.00 0.00 3.51
2635 8375 2.187946 GTCCTCCATGCCGACTGG 59.812 66.667 0.00 0.00 38.77 4.00
2645 8385 3.947173 CCGACTGGCTCAGGATCT 58.053 61.111 7.06 0.00 35.51 2.75
2646 8386 1.739049 CCGACTGGCTCAGGATCTC 59.261 63.158 7.06 0.00 35.51 2.75
2647 8387 1.739049 CGACTGGCTCAGGATCTCC 59.261 63.158 7.06 0.00 35.51 3.71
2648 8388 1.743321 CGACTGGCTCAGGATCTCCC 61.743 65.000 7.06 0.00 35.51 4.30
2649 8389 1.383803 ACTGGCTCAGGATCTCCCC 60.384 63.158 7.06 0.00 35.51 4.81
2650 8390 2.040464 TGGCTCAGGATCTCCCCC 60.040 66.667 0.00 0.00 36.42 5.40
2673 8413 3.924238 GCCGTGCCAAACATATCAG 57.076 52.632 0.00 0.00 0.00 2.90
2674 8414 1.094785 GCCGTGCCAAACATATCAGT 58.905 50.000 0.00 0.00 0.00 3.41
2675 8415 1.202177 GCCGTGCCAAACATATCAGTG 60.202 52.381 0.00 0.00 0.00 3.66
2676 8416 2.355197 CCGTGCCAAACATATCAGTGA 58.645 47.619 0.00 0.00 0.00 3.41
2677 8417 2.352651 CCGTGCCAAACATATCAGTGAG 59.647 50.000 0.00 0.00 0.00 3.51
2678 8418 2.352651 CGTGCCAAACATATCAGTGAGG 59.647 50.000 0.00 0.00 0.00 3.86
2679 8419 2.098117 GTGCCAAACATATCAGTGAGGC 59.902 50.000 9.73 9.73 41.15 4.70
2680 8420 2.025981 TGCCAAACATATCAGTGAGGCT 60.026 45.455 15.82 0.00 41.33 4.58
2681 8421 2.357009 GCCAAACATATCAGTGAGGCTG 59.643 50.000 9.45 4.42 46.34 4.85
2682 8422 2.947652 CCAAACATATCAGTGAGGCTGG 59.052 50.000 0.00 0.00 45.08 4.85
2683 8423 2.338577 AACATATCAGTGAGGCTGGC 57.661 50.000 0.00 0.00 45.08 4.85
2684 8424 0.471617 ACATATCAGTGAGGCTGGCC 59.528 55.000 3.00 3.00 45.08 5.36
2694 8434 4.816984 GGCTGGCCTGCAGCTCAT 62.817 66.667 32.41 0.00 44.51 2.90
2695 8435 3.518998 GCTGGCCTGCAGCTCATG 61.519 66.667 27.96 0.00 42.05 3.07
2696 8436 2.271173 CTGGCCTGCAGCTCATGA 59.729 61.111 8.66 0.00 43.05 3.07
2697 8437 2.045634 TGGCCTGCAGCTCATGAC 60.046 61.111 8.66 0.00 43.05 3.06
2698 8438 2.827642 GGCCTGCAGCTCATGACC 60.828 66.667 8.66 0.00 43.05 4.02
2699 8439 2.045634 GCCTGCAGCTCATGACCA 60.046 61.111 8.66 0.00 38.99 4.02
2700 8440 2.404995 GCCTGCAGCTCATGACCAC 61.405 63.158 8.66 0.00 38.99 4.16
2701 8441 2.104859 CCTGCAGCTCATGACCACG 61.105 63.158 8.66 0.00 0.00 4.94
2702 8442 1.375140 CTGCAGCTCATGACCACGT 60.375 57.895 0.00 0.00 0.00 4.49
2703 8443 0.108662 CTGCAGCTCATGACCACGTA 60.109 55.000 0.00 0.00 0.00 3.57
2704 8444 0.108662 TGCAGCTCATGACCACGTAG 60.109 55.000 0.00 0.00 0.00 3.51
2705 8445 0.807667 GCAGCTCATGACCACGTAGG 60.808 60.000 0.00 0.00 45.67 3.18
2755 8710 1.556564 CGACGTGGAAGCGTATGAAT 58.443 50.000 0.00 0.00 45.79 2.57
2766 8721 3.950397 AGCGTATGAATCACTTTTGGGA 58.050 40.909 0.00 0.00 35.63 4.37
2769 8724 5.095490 GCGTATGAATCACTTTTGGGAAAG 58.905 41.667 0.00 0.00 46.17 2.62
2787 8742 7.832769 TGGGAAAGTAAACACATATAAAAGGC 58.167 34.615 0.00 0.00 0.00 4.35
2852 8807 3.073650 AGGACCTGAGATGAGCAAACTTT 59.926 43.478 0.00 0.00 0.00 2.66
2853 8808 3.823304 GGACCTGAGATGAGCAAACTTTT 59.177 43.478 0.00 0.00 0.00 2.27
2854 8809 5.003804 GGACCTGAGATGAGCAAACTTTTA 58.996 41.667 0.00 0.00 0.00 1.52
2855 8810 5.473504 GGACCTGAGATGAGCAAACTTTTAA 59.526 40.000 0.00 0.00 0.00 1.52
2856 8811 6.151817 GGACCTGAGATGAGCAAACTTTTAAT 59.848 38.462 0.00 0.00 0.00 1.40
2857 8812 6.917533 ACCTGAGATGAGCAAACTTTTAATG 58.082 36.000 0.00 0.00 0.00 1.90
2858 8813 6.071728 ACCTGAGATGAGCAAACTTTTAATGG 60.072 38.462 0.00 0.00 0.00 3.16
2859 8814 6.271488 TGAGATGAGCAAACTTTTAATGGG 57.729 37.500 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.497103 TGAGGATGCCATCATTTCGAT 57.503 42.857 7.06 0.00 31.96 3.59
19 20 3.280197 TTGAGGATGCCATCATTTCGA 57.720 42.857 7.06 0.00 31.96 3.71
20 21 4.579454 ATTTGAGGATGCCATCATTTCG 57.421 40.909 7.06 0.00 31.96 3.46
21 22 8.770828 CATTTTATTTGAGGATGCCATCATTTC 58.229 33.333 7.06 1.97 31.96 2.17
22 23 7.227910 GCATTTTATTTGAGGATGCCATCATTT 59.772 33.333 7.06 0.00 37.67 2.32
23 24 6.708949 GCATTTTATTTGAGGATGCCATCATT 59.291 34.615 7.06 0.00 37.67 2.57
24 25 6.183361 TGCATTTTATTTGAGGATGCCATCAT 60.183 34.615 7.06 0.00 41.70 2.45
25 26 5.128991 TGCATTTTATTTGAGGATGCCATCA 59.871 36.000 7.06 0.00 41.70 3.07
26 27 5.464389 GTGCATTTTATTTGAGGATGCCATC 59.536 40.000 0.00 0.00 41.70 3.51
27 28 5.362263 GTGCATTTTATTTGAGGATGCCAT 58.638 37.500 0.00 0.00 41.70 4.40
28 29 4.677514 CGTGCATTTTATTTGAGGATGCCA 60.678 41.667 0.00 0.00 41.70 4.92
29 30 3.798337 CGTGCATTTTATTTGAGGATGCC 59.202 43.478 0.00 0.00 41.70 4.40
30 31 4.423732 ACGTGCATTTTATTTGAGGATGC 58.576 39.130 0.00 0.00 42.48 3.91
31 32 6.092092 TCAACGTGCATTTTATTTGAGGATG 58.908 36.000 0.00 0.00 0.00 3.51
32 33 6.150976 TCTCAACGTGCATTTTATTTGAGGAT 59.849 34.615 15.70 0.00 40.15 3.24
33 34 5.471797 TCTCAACGTGCATTTTATTTGAGGA 59.528 36.000 15.70 6.27 40.15 3.71
34 35 5.698832 TCTCAACGTGCATTTTATTTGAGG 58.301 37.500 15.70 4.82 40.15 3.86
35 36 7.379529 ACTTTCTCAACGTGCATTTTATTTGAG 59.620 33.333 12.19 12.19 40.78 3.02
36 37 7.199766 ACTTTCTCAACGTGCATTTTATTTGA 58.800 30.769 0.00 0.00 0.00 2.69
37 38 7.393551 ACTTTCTCAACGTGCATTTTATTTG 57.606 32.000 0.00 0.00 0.00 2.32
38 39 9.691362 ATTACTTTCTCAACGTGCATTTTATTT 57.309 25.926 0.00 0.00 0.00 1.40
40 41 9.769093 GTATTACTTTCTCAACGTGCATTTTAT 57.231 29.630 0.00 0.00 0.00 1.40
41 42 8.775527 TGTATTACTTTCTCAACGTGCATTTTA 58.224 29.630 0.00 0.00 0.00 1.52
42 43 7.644490 TGTATTACTTTCTCAACGTGCATTTT 58.356 30.769 0.00 0.00 0.00 1.82
43 44 7.197071 TGTATTACTTTCTCAACGTGCATTT 57.803 32.000 0.00 0.00 0.00 2.32
44 45 6.795098 TGTATTACTTTCTCAACGTGCATT 57.205 33.333 0.00 0.00 0.00 3.56
45 46 6.985188 ATGTATTACTTTCTCAACGTGCAT 57.015 33.333 0.00 0.00 0.00 3.96
46 47 6.795098 AATGTATTACTTTCTCAACGTGCA 57.205 33.333 0.00 0.00 0.00 4.57
47 48 8.818057 AGATAATGTATTACTTTCTCAACGTGC 58.182 33.333 0.00 0.00 0.00 5.34
49 50 8.818057 GCAGATAATGTATTACTTTCTCAACGT 58.182 33.333 9.19 0.00 0.00 3.99
50 51 8.817100 TGCAGATAATGTATTACTTTCTCAACG 58.183 33.333 9.19 0.00 0.00 4.10
51 52 9.922305 GTGCAGATAATGTATTACTTTCTCAAC 57.078 33.333 0.00 3.70 0.00 3.18
52 53 9.890629 AGTGCAGATAATGTATTACTTTCTCAA 57.109 29.630 0.00 0.00 0.00 3.02
59 60 9.811995 TCGTTTTAGTGCAGATAATGTATTACT 57.188 29.630 0.00 0.00 0.00 2.24
60 61 9.845305 GTCGTTTTAGTGCAGATAATGTATTAC 57.155 33.333 0.00 0.00 0.00 1.89
61 62 8.748582 CGTCGTTTTAGTGCAGATAATGTATTA 58.251 33.333 0.00 0.00 0.00 0.98
62 63 7.277098 ACGTCGTTTTAGTGCAGATAATGTATT 59.723 33.333 0.00 0.00 0.00 1.89
63 64 6.755141 ACGTCGTTTTAGTGCAGATAATGTAT 59.245 34.615 0.00 0.00 0.00 2.29
64 65 6.094719 ACGTCGTTTTAGTGCAGATAATGTA 58.905 36.000 0.00 0.00 0.00 2.29
65 66 4.927425 ACGTCGTTTTAGTGCAGATAATGT 59.073 37.500 0.00 0.00 0.00 2.71
66 67 5.450376 ACGTCGTTTTAGTGCAGATAATG 57.550 39.130 0.00 0.00 0.00 1.90
67 68 7.585286 TTAACGTCGTTTTAGTGCAGATAAT 57.415 32.000 16.98 0.00 0.00 1.28
68 69 7.405469 TTTAACGTCGTTTTAGTGCAGATAA 57.595 32.000 16.98 0.00 0.00 1.75
69 70 7.585286 ATTTAACGTCGTTTTAGTGCAGATA 57.415 32.000 16.98 0.00 0.00 1.98
70 71 5.910637 TTTAACGTCGTTTTAGTGCAGAT 57.089 34.783 16.98 0.00 0.00 2.90
71 72 5.910637 ATTTAACGTCGTTTTAGTGCAGA 57.089 34.783 16.98 0.00 0.00 4.26
72 73 6.963017 AAATTTAACGTCGTTTTAGTGCAG 57.037 33.333 16.98 0.00 0.00 4.41
73 74 9.105206 GAATAAATTTAACGTCGTTTTAGTGCA 57.895 29.630 16.98 0.00 0.00 4.57
74 75 9.105206 TGAATAAATTTAACGTCGTTTTAGTGC 57.895 29.630 16.98 3.66 0.00 4.40
94 95 9.856488 GGCATTCGTATACTCTTCTATGAATAA 57.144 33.333 0.56 0.00 33.76 1.40
95 96 8.467598 GGGCATTCGTATACTCTTCTATGAATA 58.532 37.037 0.56 0.00 33.76 1.75
96 97 7.324178 GGGCATTCGTATACTCTTCTATGAAT 58.676 38.462 0.56 0.00 35.13 2.57
97 98 6.295123 GGGGCATTCGTATACTCTTCTATGAA 60.295 42.308 0.56 0.00 0.00 2.57
98 99 5.185249 GGGGCATTCGTATACTCTTCTATGA 59.815 44.000 0.56 0.00 0.00 2.15
99 100 5.186021 AGGGGCATTCGTATACTCTTCTATG 59.814 44.000 0.56 0.00 0.00 2.23
100 101 5.334421 AGGGGCATTCGTATACTCTTCTAT 58.666 41.667 0.56 0.00 0.00 1.98
101 102 4.737578 AGGGGCATTCGTATACTCTTCTA 58.262 43.478 0.56 0.00 0.00 2.10
102 103 3.577919 AGGGGCATTCGTATACTCTTCT 58.422 45.455 0.56 0.00 0.00 2.85
103 104 4.280174 TGTAGGGGCATTCGTATACTCTTC 59.720 45.833 0.56 0.00 0.00 2.87
104 105 4.038883 GTGTAGGGGCATTCGTATACTCTT 59.961 45.833 0.56 0.00 0.00 2.85
105 106 3.573110 GTGTAGGGGCATTCGTATACTCT 59.427 47.826 0.56 0.00 0.00 3.24
106 107 3.573110 AGTGTAGGGGCATTCGTATACTC 59.427 47.826 0.56 0.00 28.26 2.59
107 108 3.573695 AGTGTAGGGGCATTCGTATACT 58.426 45.455 0.56 0.00 0.00 2.12
108 109 4.332428 AAGTGTAGGGGCATTCGTATAC 57.668 45.455 0.00 0.00 0.00 1.47
109 110 4.202284 GGAAAGTGTAGGGGCATTCGTATA 60.202 45.833 0.00 0.00 0.00 1.47
110 111 3.433173 GGAAAGTGTAGGGGCATTCGTAT 60.433 47.826 0.00 0.00 0.00 3.06
111 112 2.093341 GGAAAGTGTAGGGGCATTCGTA 60.093 50.000 0.00 0.00 0.00 3.43
112 113 1.339727 GGAAAGTGTAGGGGCATTCGT 60.340 52.381 0.00 0.00 0.00 3.85
113 114 1.339631 TGGAAAGTGTAGGGGCATTCG 60.340 52.381 0.00 0.00 0.00 3.34
114 115 2.092323 GTGGAAAGTGTAGGGGCATTC 58.908 52.381 0.00 0.00 0.00 2.67
115 116 1.272480 GGTGGAAAGTGTAGGGGCATT 60.272 52.381 0.00 0.00 0.00 3.56
116 117 0.331616 GGTGGAAAGTGTAGGGGCAT 59.668 55.000 0.00 0.00 0.00 4.40
117 118 0.770557 AGGTGGAAAGTGTAGGGGCA 60.771 55.000 0.00 0.00 0.00 5.36
118 119 0.035343 GAGGTGGAAAGTGTAGGGGC 60.035 60.000 0.00 0.00 0.00 5.80
119 120 0.618981 GGAGGTGGAAAGTGTAGGGG 59.381 60.000 0.00 0.00 0.00 4.79
120 121 1.358152 TGGAGGTGGAAAGTGTAGGG 58.642 55.000 0.00 0.00 0.00 3.53
121 122 3.072476 TCTTTGGAGGTGGAAAGTGTAGG 59.928 47.826 0.00 0.00 32.11 3.18
122 123 4.351874 TCTTTGGAGGTGGAAAGTGTAG 57.648 45.455 0.00 0.00 32.11 2.74
123 124 4.781775 TTCTTTGGAGGTGGAAAGTGTA 57.218 40.909 0.00 0.00 32.11 2.90
124 125 3.662759 TTCTTTGGAGGTGGAAAGTGT 57.337 42.857 0.00 0.00 32.11 3.55
125 126 4.021981 GGAATTCTTTGGAGGTGGAAAGTG 60.022 45.833 5.23 0.00 32.11 3.16
126 127 4.152647 GGAATTCTTTGGAGGTGGAAAGT 58.847 43.478 5.23 0.00 32.11 2.66
127 128 3.191371 CGGAATTCTTTGGAGGTGGAAAG 59.809 47.826 5.23 0.00 0.00 2.62
128 129 3.153919 CGGAATTCTTTGGAGGTGGAAA 58.846 45.455 5.23 0.00 0.00 3.13
129 130 2.790433 CGGAATTCTTTGGAGGTGGAA 58.210 47.619 5.23 0.00 0.00 3.53
130 131 1.613255 GCGGAATTCTTTGGAGGTGGA 60.613 52.381 5.23 0.00 0.00 4.02
131 132 0.811281 GCGGAATTCTTTGGAGGTGG 59.189 55.000 5.23 0.00 0.00 4.61
132 133 1.826385 AGCGGAATTCTTTGGAGGTG 58.174 50.000 5.23 0.00 0.00 4.00
133 134 2.162681 CAAGCGGAATTCTTTGGAGGT 58.837 47.619 5.23 0.00 0.00 3.85
134 135 2.095059 CACAAGCGGAATTCTTTGGAGG 60.095 50.000 5.23 0.49 0.00 4.30
135 136 2.669391 GCACAAGCGGAATTCTTTGGAG 60.669 50.000 5.23 6.77 0.00 3.86
136 137 1.269448 GCACAAGCGGAATTCTTTGGA 59.731 47.619 5.23 0.00 0.00 3.53
137 138 1.000385 TGCACAAGCGGAATTCTTTGG 60.000 47.619 5.23 4.44 46.23 3.28
138 139 2.420628 TGCACAAGCGGAATTCTTTG 57.579 45.000 5.23 10.14 46.23 2.77
148 149 0.435008 GAAGACGTACTGCACAAGCG 59.565 55.000 0.00 0.00 46.23 4.68
149 150 0.790814 GGAAGACGTACTGCACAAGC 59.209 55.000 0.00 0.00 42.57 4.01
150 151 2.148916 TGGAAGACGTACTGCACAAG 57.851 50.000 0.00 0.00 0.00 3.16
151 152 2.224185 ACATGGAAGACGTACTGCACAA 60.224 45.455 0.00 0.00 0.00 3.33
152 153 1.343142 ACATGGAAGACGTACTGCACA 59.657 47.619 0.00 0.00 0.00 4.57
153 154 2.080286 ACATGGAAGACGTACTGCAC 57.920 50.000 0.00 0.00 0.00 4.57
154 155 2.831685 AACATGGAAGACGTACTGCA 57.168 45.000 0.00 0.00 0.00 4.41
155 156 3.064207 TGAAACATGGAAGACGTACTGC 58.936 45.455 0.00 0.00 0.00 4.40
156 157 5.666969 TTTGAAACATGGAAGACGTACTG 57.333 39.130 0.00 0.00 0.00 2.74
157 158 6.053005 TCTTTTGAAACATGGAAGACGTACT 58.947 36.000 0.00 0.00 0.00 2.73
158 159 6.295039 TCTTTTGAAACATGGAAGACGTAC 57.705 37.500 0.00 0.00 0.00 3.67
159 160 6.764085 TCTTCTTTTGAAACATGGAAGACGTA 59.236 34.615 0.00 0.00 38.07 3.57
160 161 5.588648 TCTTCTTTTGAAACATGGAAGACGT 59.411 36.000 0.00 0.00 38.07 4.34
161 162 6.060028 TCTTCTTTTGAAACATGGAAGACG 57.940 37.500 0.00 0.00 38.07 4.18
162 163 8.877808 ATTTCTTCTTTTGAAACATGGAAGAC 57.122 30.769 0.00 0.00 38.82 3.01
179 180 9.382275 ACAAGCAAAATTGTTGTAATTTCTTCT 57.618 25.926 10.35 0.00 40.47 2.85
180 181 9.424659 CACAAGCAAAATTGTTGTAATTTCTTC 57.575 29.630 11.18 0.00 41.41 2.87
181 182 8.945057 ACACAAGCAAAATTGTTGTAATTTCTT 58.055 25.926 11.18 0.00 41.41 2.52
182 183 8.491331 ACACAAGCAAAATTGTTGTAATTTCT 57.509 26.923 11.18 0.00 41.41 2.52
183 184 9.848172 CTACACAAGCAAAATTGTTGTAATTTC 57.152 29.630 11.18 0.00 41.41 2.17
184 185 9.377312 ACTACACAAGCAAAATTGTTGTAATTT 57.623 25.926 11.18 0.00 41.41 1.82
185 186 8.940768 ACTACACAAGCAAAATTGTTGTAATT 57.059 26.923 11.18 0.00 41.41 1.40
186 187 9.458374 GTACTACACAAGCAAAATTGTTGTAAT 57.542 29.630 11.18 7.58 41.41 1.89
187 188 8.459635 TGTACTACACAAGCAAAATTGTTGTAA 58.540 29.630 11.18 5.50 41.41 2.41
188 189 7.986562 TGTACTACACAAGCAAAATTGTTGTA 58.013 30.769 11.18 0.00 41.41 2.41
189 190 6.857956 TGTACTACACAAGCAAAATTGTTGT 58.142 32.000 0.00 7.71 41.41 3.32
205 206 7.982919 ACTGTTGATAGTGTTTTGTGTACTACA 59.017 33.333 0.00 0.00 37.56 2.74
206 207 8.361592 ACTGTTGATAGTGTTTTGTGTACTAC 57.638 34.615 0.00 0.00 30.47 2.73
207 208 8.822855 CAACTGTTGATAGTGTTTTGTGTACTA 58.177 33.333 15.26 0.00 0.00 1.82
208 209 7.678690 GCAACTGTTGATAGTGTTTTGTGTACT 60.679 37.037 23.81 0.00 0.00 2.73
209 210 6.413818 GCAACTGTTGATAGTGTTTTGTGTAC 59.586 38.462 23.81 0.00 0.00 2.90
210 211 6.094186 TGCAACTGTTGATAGTGTTTTGTGTA 59.906 34.615 23.81 0.00 0.00 2.90
211 212 5.105957 TGCAACTGTTGATAGTGTTTTGTGT 60.106 36.000 23.81 0.00 0.00 3.72
212 213 5.339177 TGCAACTGTTGATAGTGTTTTGTG 58.661 37.500 23.81 0.00 0.00 3.33
213 214 5.574891 TGCAACTGTTGATAGTGTTTTGT 57.425 34.783 23.81 0.00 0.00 2.83
214 215 5.804473 TGTTGCAACTGTTGATAGTGTTTTG 59.196 36.000 28.61 0.00 0.00 2.44
215 216 5.960113 TGTTGCAACTGTTGATAGTGTTTT 58.040 33.333 28.61 0.00 0.00 2.43
216 217 5.574891 TGTTGCAACTGTTGATAGTGTTT 57.425 34.783 28.61 0.00 0.00 2.83
217 218 5.105957 TGTTGTTGCAACTGTTGATAGTGTT 60.106 36.000 28.61 0.00 0.00 3.32
218 219 4.397730 TGTTGTTGCAACTGTTGATAGTGT 59.602 37.500 28.61 0.00 0.00 3.55
219 220 4.919206 TGTTGTTGCAACTGTTGATAGTG 58.081 39.130 28.61 0.00 0.00 2.74
220 221 5.574891 TTGTTGTTGCAACTGTTGATAGT 57.425 34.783 28.61 0.00 0.00 2.12
221 222 6.884096 TTTTGTTGTTGCAACTGTTGATAG 57.116 33.333 28.61 0.00 0.00 2.08
222 223 7.840342 AATTTTGTTGTTGCAACTGTTGATA 57.160 28.000 28.61 9.05 0.00 2.15
223 224 6.740411 AATTTTGTTGTTGCAACTGTTGAT 57.260 29.167 28.61 13.46 0.00 2.57
224 225 6.870965 ACTAATTTTGTTGTTGCAACTGTTGA 59.129 30.769 28.61 6.80 0.00 3.18
225 226 7.059448 ACTAATTTTGTTGTTGCAACTGTTG 57.941 32.000 28.61 15.98 0.00 3.33
226 227 8.940768 ATACTAATTTTGTTGTTGCAACTGTT 57.059 26.923 28.61 14.69 0.00 3.16
227 228 8.194104 TGATACTAATTTTGTTGTTGCAACTGT 58.806 29.630 28.61 13.59 0.00 3.55
228 229 8.572828 TGATACTAATTTTGTTGTTGCAACTG 57.427 30.769 28.61 9.30 0.00 3.16
229 230 9.762933 AATGATACTAATTTTGTTGTTGCAACT 57.237 25.926 28.61 9.80 0.00 3.16
277 278 9.703892 GAGAGTAGTAGATAGGTATAACGTGAA 57.296 37.037 0.00 0.00 0.00 3.18
278 279 9.087871 AGAGAGTAGTAGATAGGTATAACGTGA 57.912 37.037 0.00 0.00 0.00 4.35
356 357 5.021458 ACTCCCTCCGTTCACTTCTATAAA 58.979 41.667 0.00 0.00 0.00 1.40
362 363 2.169330 ACTACTCCCTCCGTTCACTTC 58.831 52.381 0.00 0.00 0.00 3.01
370 371 4.643784 ACAAATACAGTACTACTCCCTCCG 59.356 45.833 0.00 0.00 0.00 4.63
380 381 7.412853 AAAAACCACCAACAAATACAGTACT 57.587 32.000 0.00 0.00 0.00 2.73
410 411 3.804873 TGCGGCAAAGTTTAACCAAATTC 59.195 39.130 0.00 0.00 0.00 2.17
453 458 3.496884 TGCTCAAAAAGTAGGCGTACAAG 59.503 43.478 18.13 6.94 0.00 3.16
454 459 3.468770 TGCTCAAAAAGTAGGCGTACAA 58.531 40.909 18.13 0.00 0.00 2.41
455 460 3.114668 TGCTCAAAAAGTAGGCGTACA 57.885 42.857 18.13 0.00 0.00 2.90
456 461 4.212636 TCTTTGCTCAAAAAGTAGGCGTAC 59.787 41.667 8.53 8.53 38.16 3.67
458 463 3.211045 TCTTTGCTCAAAAAGTAGGCGT 58.789 40.909 0.00 0.00 38.16 5.68
461 466 6.391227 TTTCCTCTTTGCTCAAAAAGTAGG 57.609 37.500 0.00 0.00 38.16 3.18
470 475 8.397906 CGTTGAATAATATTTCCTCTTTGCTCA 58.602 33.333 0.00 0.00 0.00 4.26
476 481 8.211629 AGCCTACGTTGAATAATATTTCCTCTT 58.788 33.333 0.00 0.00 0.00 2.85
483 488 9.174166 AGAACAAAGCCTACGTTGAATAATATT 57.826 29.630 0.00 0.00 38.47 1.28
489 494 7.448748 AATTAGAACAAAGCCTACGTTGAAT 57.551 32.000 0.00 0.00 38.47 2.57
493 498 5.918576 GCAAAATTAGAACAAAGCCTACGTT 59.081 36.000 0.00 0.00 0.00 3.99
495 500 5.569059 CAGCAAAATTAGAACAAAGCCTACG 59.431 40.000 0.00 0.00 0.00 3.51
499 504 5.049828 ACACAGCAAAATTAGAACAAAGCC 58.950 37.500 0.00 0.00 0.00 4.35
536 541 4.155826 CAGTGGCCGTTGAGAAAAATATCA 59.844 41.667 0.00 0.00 0.00 2.15
537 542 4.662145 CAGTGGCCGTTGAGAAAAATATC 58.338 43.478 0.00 0.00 0.00 1.63
580 585 3.690139 GGAAAGGAAAAGGTCGGAGAATC 59.310 47.826 0.00 0.00 39.69 2.52
589 594 2.091499 ACGGGAAAGGAAAGGAAAAGGT 60.091 45.455 0.00 0.00 0.00 3.50
598 603 3.527533 CGTGATGATACGGGAAAGGAAA 58.472 45.455 0.00 0.00 40.22 3.13
599 604 2.740580 GCGTGATGATACGGGAAAGGAA 60.741 50.000 0.00 0.00 43.87 3.36
600 605 1.202486 GCGTGATGATACGGGAAAGGA 60.202 52.381 0.00 0.00 43.87 3.36
601 606 1.217882 GCGTGATGATACGGGAAAGG 58.782 55.000 0.00 0.00 43.87 3.11
602 607 1.217882 GGCGTGATGATACGGGAAAG 58.782 55.000 0.00 0.00 43.87 2.62
603 608 0.528901 CGGCGTGATGATACGGGAAA 60.529 55.000 0.00 0.00 43.87 3.13
604 609 1.066752 CGGCGTGATGATACGGGAA 59.933 57.895 0.00 0.00 43.87 3.97
605 610 1.669049 AACGGCGTGATGATACGGGA 61.669 55.000 15.70 0.00 43.87 5.14
606 611 1.227147 AACGGCGTGATGATACGGG 60.227 57.895 15.70 0.00 43.87 5.28
607 612 0.804544 ACAACGGCGTGATGATACGG 60.805 55.000 15.70 0.00 43.87 4.02
623 628 2.600731 CAGAAAACACAAACCGCACAA 58.399 42.857 0.00 0.00 0.00 3.33
624 629 1.135257 CCAGAAAACACAAACCGCACA 60.135 47.619 0.00 0.00 0.00 4.57
641 646 1.479709 TGTTCACCAAAACCACCCAG 58.520 50.000 0.00 0.00 0.00 4.45
647 652 5.124776 TCATCGGATATTGTTCACCAAAACC 59.875 40.000 0.00 0.00 36.44 3.27
648 653 6.128007 ACTCATCGGATATTGTTCACCAAAAC 60.128 38.462 0.00 0.00 36.44 2.43
649 654 5.943416 ACTCATCGGATATTGTTCACCAAAA 59.057 36.000 0.00 0.00 36.44 2.44
746 764 6.375455 AGCTAACCATTTGCATGCTATATACC 59.625 38.462 20.33 0.00 0.00 2.73
750 768 5.593909 ACAAGCTAACCATTTGCATGCTATA 59.406 36.000 20.33 4.27 0.00 1.31
795 813 1.424403 TGCACGTGTCGTCTTTATGG 58.576 50.000 18.38 0.00 38.32 2.74
804 822 1.724654 GCTAACCATTTGCACGTGTCG 60.725 52.381 18.38 1.28 0.00 4.35
930 1010 4.657969 GGAGAGGATGCCCAGCTATATATT 59.342 45.833 0.00 0.00 33.88 1.28
939 1023 0.399091 TGGTAGGAGAGGATGCCCAG 60.399 60.000 0.00 0.00 33.88 4.45
1112 1208 2.203280 CCGTGGTGGTGGCTTTGA 60.203 61.111 0.00 0.00 0.00 2.69
1183 1279 2.499685 CGGTGGTAGGCTAGGCAC 59.500 66.667 19.70 13.72 0.00 5.01
1368 5418 0.620556 GGGTCTGAGGCAATCCTTGA 59.379 55.000 0.00 0.00 44.46 3.02
1493 5546 0.163788 CGAGAACACCGTGATGTTGC 59.836 55.000 5.28 0.00 42.89 4.17
1756 5844 8.747471 TCAAATCATCACCAATGCAAGTTAATA 58.253 29.630 0.00 0.00 35.17 0.98
1915 6015 6.774673 TCCACTAAACATCCAAGTAATCACA 58.225 36.000 0.00 0.00 0.00 3.58
1919 6019 7.110155 ACGAATCCACTAAACATCCAAGTAAT 58.890 34.615 0.00 0.00 0.00 1.89
2023 6123 9.712305 CTATACTTATGGCAATTAAGTAGCACT 57.288 33.333 19.75 10.13 38.97 4.40
2037 6137 8.534954 TGACTCCATATACCTATACTTATGGC 57.465 38.462 3.47 0.00 40.50 4.40
2174 6274 7.819415 GGTTTCTTTTAATGGAAATTGGAGAGG 59.181 37.037 6.63 0.00 34.60 3.69
2219 6319 2.143008 TTCTTTTGCTCGCGTCTGTA 57.857 45.000 5.77 0.00 0.00 2.74
2225 6325 0.778223 GCCTTTTTCTTTTGCTCGCG 59.222 50.000 0.00 0.00 0.00 5.87
2264 6364 2.556114 GGATAGCATTTCCTCCCCATGG 60.556 54.545 4.14 4.14 0.00 3.66
2267 6367 1.494721 GTGGATAGCATTTCCTCCCCA 59.505 52.381 0.00 0.00 34.17 4.96
2268 6368 1.202940 GGTGGATAGCATTTCCTCCCC 60.203 57.143 8.67 0.00 39.83 4.81
2269 6369 2.278332 GGTGGATAGCATTTCCTCCC 57.722 55.000 8.67 2.76 39.83 4.30
2271 6371 1.202940 GGGGGTGGATAGCATTTCCTC 60.203 57.143 0.00 0.00 34.17 3.71
2273 6373 3.439440 GGGGGTGGATAGCATTTCC 57.561 57.895 0.00 0.00 0.00 3.13
2305 6680 2.911484 CTTGGACCTTAGGTGATCTGC 58.089 52.381 9.39 0.00 35.25 4.26
2306 6681 2.420687 GGCTTGGACCTTAGGTGATCTG 60.421 54.545 9.39 0.00 35.25 2.90
2308 6683 1.840635 AGGCTTGGACCTTAGGTGATC 59.159 52.381 9.39 0.00 36.28 2.92
2310 6685 0.984230 CAGGCTTGGACCTTAGGTGA 59.016 55.000 9.39 0.00 38.26 4.02
2311 6686 0.984230 TCAGGCTTGGACCTTAGGTG 59.016 55.000 9.39 0.00 38.26 4.00
2312 6687 1.203313 TCTCAGGCTTGGACCTTAGGT 60.203 52.381 2.34 2.34 38.26 3.08
2313 6688 1.484240 CTCTCAGGCTTGGACCTTAGG 59.516 57.143 0.00 0.00 38.26 2.69
2314 6689 2.430332 CTCTCTCAGGCTTGGACCTTAG 59.570 54.545 0.00 0.00 38.26 2.18
2315 6690 2.043115 TCTCTCTCAGGCTTGGACCTTA 59.957 50.000 0.00 0.00 38.26 2.69
2316 6691 1.203237 TCTCTCTCAGGCTTGGACCTT 60.203 52.381 0.00 0.00 38.26 3.50
2317 6692 0.411452 TCTCTCTCAGGCTTGGACCT 59.589 55.000 0.00 0.00 42.30 3.85
2318 6693 0.534873 GTCTCTCTCAGGCTTGGACC 59.465 60.000 0.00 0.00 0.00 4.46
2319 6694 0.172352 CGTCTCTCTCAGGCTTGGAC 59.828 60.000 0.00 0.00 0.00 4.02
2320 6695 0.038310 TCGTCTCTCTCAGGCTTGGA 59.962 55.000 0.00 0.00 0.00 3.53
2321 6696 0.172352 GTCGTCTCTCTCAGGCTTGG 59.828 60.000 0.00 0.00 0.00 3.61
2322 6697 1.132262 GAGTCGTCTCTCTCAGGCTTG 59.868 57.143 2.19 0.00 37.68 4.01
2324 6699 0.326595 TGAGTCGTCTCTCTCAGGCT 59.673 55.000 10.95 0.00 40.98 4.58
2325 6700 1.169577 TTGAGTCGTCTCTCTCAGGC 58.830 55.000 10.95 0.00 40.91 4.85
2328 6703 2.956333 TGGTTTTGAGTCGTCTCTCTCA 59.044 45.455 10.95 2.82 40.98 3.27
2329 6704 3.570559 CTGGTTTTGAGTCGTCTCTCTC 58.429 50.000 10.95 0.45 40.98 3.20
2330 6705 2.288518 GCTGGTTTTGAGTCGTCTCTCT 60.289 50.000 10.95 0.00 40.98 3.10
2331 6706 2.062519 GCTGGTTTTGAGTCGTCTCTC 58.937 52.381 10.95 4.93 40.98 3.20
2332 6707 1.412710 TGCTGGTTTTGAGTCGTCTCT 59.587 47.619 10.95 0.00 40.98 3.10
2333 6708 1.865865 TGCTGGTTTTGAGTCGTCTC 58.134 50.000 2.47 2.47 40.79 3.36
2334 6709 1.940613 GTTGCTGGTTTTGAGTCGTCT 59.059 47.619 0.00 0.00 0.00 4.18
2335 6710 1.332904 CGTTGCTGGTTTTGAGTCGTC 60.333 52.381 0.00 0.00 0.00 4.20
2338 6713 2.096819 TGTTCGTTGCTGGTTTTGAGTC 59.903 45.455 0.00 0.00 0.00 3.36
2339 6714 2.088423 TGTTCGTTGCTGGTTTTGAGT 58.912 42.857 0.00 0.00 0.00 3.41
2340 6715 2.842208 TGTTCGTTGCTGGTTTTGAG 57.158 45.000 0.00 0.00 0.00 3.02
2341 6716 2.685388 TGATGTTCGTTGCTGGTTTTGA 59.315 40.909 0.00 0.00 0.00 2.69
2342 6717 3.044986 CTGATGTTCGTTGCTGGTTTTG 58.955 45.455 0.00 0.00 0.00 2.44
2343 6718 2.948979 TCTGATGTTCGTTGCTGGTTTT 59.051 40.909 0.00 0.00 0.00 2.43
2345 6720 1.873591 GTCTGATGTTCGTTGCTGGTT 59.126 47.619 0.00 0.00 0.00 3.67
2346 6721 1.070758 AGTCTGATGTTCGTTGCTGGT 59.929 47.619 0.00 0.00 0.00 4.00
2347 6722 1.728971 GAGTCTGATGTTCGTTGCTGG 59.271 52.381 0.00 0.00 0.00 4.85
2349 6724 1.344438 TGGAGTCTGATGTTCGTTGCT 59.656 47.619 0.00 0.00 0.00 3.91
2350 6725 1.728971 CTGGAGTCTGATGTTCGTTGC 59.271 52.381 0.00 0.00 0.00 4.17
2353 6728 1.633774 ACCTGGAGTCTGATGTTCGT 58.366 50.000 0.00 0.00 0.00 3.85
2355 6730 3.056749 ACGTAACCTGGAGTCTGATGTTC 60.057 47.826 0.00 0.00 0.00 3.18
2356 6731 2.897969 ACGTAACCTGGAGTCTGATGTT 59.102 45.455 0.00 0.00 0.00 2.71
2357 6732 2.526432 ACGTAACCTGGAGTCTGATGT 58.474 47.619 0.00 0.00 0.00 3.06
2361 6736 5.633830 TTAAGTACGTAACCTGGAGTCTG 57.366 43.478 0.00 0.00 0.00 3.51
2362 6737 6.886459 TGTATTAAGTACGTAACCTGGAGTCT 59.114 38.462 0.00 0.00 36.01 3.24
2363 6738 7.088589 TGTATTAAGTACGTAACCTGGAGTC 57.911 40.000 0.00 0.00 36.01 3.36
2365 6740 7.765307 TCTTGTATTAAGTACGTAACCTGGAG 58.235 38.462 0.00 0.41 36.01 3.86
2366 6741 7.394359 ACTCTTGTATTAAGTACGTAACCTGGA 59.606 37.037 0.00 0.00 36.01 3.86
2367 6742 7.542025 ACTCTTGTATTAAGTACGTAACCTGG 58.458 38.462 3.26 0.00 36.01 4.45
2374 6749 9.426837 TGCATTTTACTCTTGTATTAAGTACGT 57.573 29.630 0.00 0.00 36.01 3.57
2502 8122 6.653320 TGACGCACCTTCAATAGTTTTAGAAT 59.347 34.615 0.00 0.00 0.00 2.40
2523 8263 6.779117 TCGAAGTTATAGGACTAAACTGACG 58.221 40.000 16.12 16.12 36.31 4.35
2602 8342 3.735037 GACGACATCCCCTTCCCGC 62.735 68.421 0.00 0.00 0.00 6.13
2628 8368 1.739049 GAGATCCTGAGCCAGTCGG 59.261 63.158 0.00 0.00 0.00 4.79
2629 8369 1.739049 GGAGATCCTGAGCCAGTCG 59.261 63.158 0.00 0.00 0.00 4.18
2630 8370 1.406860 GGGGAGATCCTGAGCCAGTC 61.407 65.000 0.00 0.00 35.95 3.51
2631 8371 1.383803 GGGGAGATCCTGAGCCAGT 60.384 63.158 0.00 0.00 35.95 4.00
2632 8372 2.146061 GGGGGAGATCCTGAGCCAG 61.146 68.421 0.00 0.00 35.95 4.85
2633 8373 2.040464 GGGGGAGATCCTGAGCCA 60.040 66.667 0.00 0.00 35.95 4.75
2655 8395 1.094785 ACTGATATGTTTGGCACGGC 58.905 50.000 0.00 0.00 0.00 5.68
2656 8396 2.352651 CTCACTGATATGTTTGGCACGG 59.647 50.000 0.00 0.00 0.00 4.94
2657 8397 2.352651 CCTCACTGATATGTTTGGCACG 59.647 50.000 0.00 0.00 0.00 5.34
2658 8398 2.098117 GCCTCACTGATATGTTTGGCAC 59.902 50.000 0.00 0.00 38.99 5.01
2659 8399 2.025981 AGCCTCACTGATATGTTTGGCA 60.026 45.455 0.00 0.00 41.33 4.92
2660 8400 2.648059 AGCCTCACTGATATGTTTGGC 58.352 47.619 0.00 0.00 39.40 4.52
2671 8411 4.340246 TGCAGGCCAGCCTCACTG 62.340 66.667 18.54 0.00 46.28 3.66
2672 8412 4.031129 CTGCAGGCCAGCCTCACT 62.031 66.667 18.54 0.00 46.28 3.41
2679 8419 2.113433 GTCATGAGCTGCAGGCCAG 61.113 63.158 17.12 0.00 44.67 4.85
2680 8420 2.045634 GTCATGAGCTGCAGGCCA 60.046 61.111 17.12 8.48 43.05 5.36
2681 8421 2.827642 GGTCATGAGCTGCAGGCC 60.828 66.667 17.12 0.00 43.05 5.19
2682 8422 2.045634 TGGTCATGAGCTGCAGGC 60.046 61.111 24.30 7.98 42.19 4.85
2683 8423 2.104859 CGTGGTCATGAGCTGCAGG 61.105 63.158 24.30 7.62 0.00 4.85
2684 8424 0.108662 TACGTGGTCATGAGCTGCAG 60.109 55.000 24.30 10.11 0.00 4.41
2685 8425 0.108662 CTACGTGGTCATGAGCTGCA 60.109 55.000 24.30 8.19 0.00 4.41
2686 8426 0.807667 CCTACGTGGTCATGAGCTGC 60.808 60.000 24.30 15.96 0.00 5.25
2687 8427 3.352447 CCTACGTGGTCATGAGCTG 57.648 57.895 24.30 18.54 0.00 4.24
2701 8441 4.323477 TGTGCGCCCACCACCTAC 62.323 66.667 4.18 0.00 41.35 3.18
2702 8442 4.015406 CTGTGCGCCCACCACCTA 62.015 66.667 4.18 0.00 41.35 3.08
2715 8455 0.810648 AGTGTGTGTTGCAACCTGTG 59.189 50.000 26.14 0.00 0.00 3.66
2800 8755 1.166129 GGCCAGCATCTATGATGCAG 58.834 55.000 27.25 21.22 46.77 4.41
2805 8760 0.475044 TGCATGGCCAGCATCTATGA 59.525 50.000 21.35 2.36 37.02 2.15
2810 8765 2.106332 GCTTGCATGGCCAGCATC 59.894 61.111 24.38 17.22 44.99 3.91
2814 8769 2.415608 CCTGAGCTTGCATGGCCAG 61.416 63.158 13.05 4.54 0.00 4.85
2829 8784 2.027377 AGTTTGCTCATCTCAGGTCCTG 60.027 50.000 13.21 13.21 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.