Multiple sequence alignment - TraesCS1D01G434300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G434300 chr1D 100.000 4112 0 0 1 4112 483527143 483531254 0.000000e+00 7594
1 TraesCS1D01G434300 chr1D 90.977 266 21 3 3840 4104 401204835 401204572 5.060000e-94 355
2 TraesCS1D01G434300 chr1D 88.448 277 20 3 1115 1391 483520904 483521168 1.430000e-84 324
3 TraesCS1D01G434300 chr1B 89.099 2275 142 49 1909 4112 673785206 673787445 0.000000e+00 2730
4 TraesCS1D01G434300 chr1B 89.456 607 41 15 792 1393 673784393 673784981 0.000000e+00 745
5 TraesCS1D01G434300 chr1B 91.089 303 24 2 1091 1393 673748422 673748721 1.380000e-109 407
6 TraesCS1D01G434300 chr1B 90.672 268 22 3 3840 4106 58253061 58253326 1.820000e-93 353
7 TraesCS1D01G434300 chr1B 90.217 276 18 5 3839 4110 642955761 642955491 6.540000e-93 351
8 TraesCS1D01G434300 chr1B 94.872 195 8 2 1445 1638 673785000 673785193 1.860000e-78 303
9 TraesCS1D01G434300 chr1B 88.983 118 4 4 6 114 673783951 673784068 1.990000e-28 137
10 TraesCS1D01G434300 chr1A 89.826 2015 147 27 1864 3842 580445273 580447265 0.000000e+00 2532
11 TraesCS1D01G434300 chr1A 85.787 978 69 28 472 1399 580444012 580444969 0.000000e+00 972
12 TraesCS1D01G434300 chr1A 87.018 855 96 7 2052 2897 580448485 580449333 0.000000e+00 950
13 TraesCS1D01G434300 chr1A 89.666 329 30 2 121 447 29240160 29239834 2.290000e-112 416
14 TraesCS1D01G434300 chr1A 92.364 275 21 0 1117 1391 580433997 580434271 3.850000e-105 392
15 TraesCS1D01G434300 chr1A 99.275 138 1 0 1497 1634 580445031 580445168 2.450000e-62 250
16 TraesCS1D01G434300 chr1A 92.437 119 9 0 1 119 580443631 580443749 1.970000e-38 171
17 TraesCS1D01G434300 chr7D 91.159 328 28 1 137 464 424129389 424129715 1.050000e-120 444
18 TraesCS1D01G434300 chr2B 90.332 331 31 1 137 467 25261289 25260960 2.270000e-117 433
19 TraesCS1D01G434300 chr2B 91.318 311 27 0 137 447 588362080 588362390 3.800000e-115 425
20 TraesCS1D01G434300 chr2B 89.634 328 33 1 137 464 178165583 178165257 2.290000e-112 416
21 TraesCS1D01G434300 chr6B 91.667 312 24 2 137 447 609926522 609926212 8.170000e-117 431
22 TraesCS1D01G434300 chr6B 91.857 307 25 0 137 443 567613661 567613355 2.940000e-116 429
23 TraesCS1D01G434300 chr6B 91.318 311 27 0 137 447 71032288 71032598 3.800000e-115 425
24 TraesCS1D01G434300 chr7B 89.970 329 33 0 137 465 463483544 463483872 3.800000e-115 425
25 TraesCS1D01G434300 chr2A 91.045 268 21 3 3839 4105 575349019 575349284 3.910000e-95 359
26 TraesCS1D01G434300 chr3A 90.706 269 22 3 3840 4107 12408996 12408730 5.060000e-94 355
27 TraesCS1D01G434300 chr3D 90.672 268 21 4 3836 4101 603709014 603709279 1.820000e-93 353
28 TraesCS1D01G434300 chr3B 89.399 283 26 4 3824 4104 206273065 206273345 1.820000e-93 353
29 TraesCS1D01G434300 chr6D 89.928 278 18 6 3831 4104 94757173 94757444 2.350000e-92 350


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G434300 chr1D 483527143 483531254 4111 False 7594.00 7594 100.0000 1 4112 1 chr1D.!!$F2 4111
1 TraesCS1D01G434300 chr1B 673783951 673787445 3494 False 978.75 2730 90.6025 6 4112 4 chr1B.!!$F3 4106
2 TraesCS1D01G434300 chr1A 580443631 580449333 5702 False 975.00 2532 90.8686 1 3842 5 chr1A.!!$F2 3841

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 231 0.033920 CCCTGTTTTCAAGCCCAAGC 59.966 55.0 0.00 0.0 40.32 4.01 F
226 233 0.033920 CTGTTTTCAAGCCCAAGCCC 59.966 55.0 0.00 0.0 41.25 5.19 F
331 338 0.039035 AAAGCCCGGCCTGAAATACA 59.961 50.0 5.55 0.0 0.00 2.29 F
1689 1793 0.023732 CTGTTAGCGTCGCACGATTG 59.976 55.0 21.09 0.9 46.05 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1670 1774 0.023732 CAATCGTGCGACGCTAACAG 59.976 55.0 22.08 8.32 42.21 3.16 R
1690 1794 0.108207 CTGGGAGATCATCAGGCCAC 59.892 60.0 5.01 0.00 0.00 5.01 R
1691 1795 1.058428 CCTGGGAGATCATCAGGCCA 61.058 60.0 5.01 0.00 41.12 5.36 R
3430 3592 0.539051 ATGAGCCTGTGTAGCTGGAC 59.461 55.0 0.00 0.00 41.75 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 126 7.054998 CACATGCGTGTATTTATACTTGTACG 58.945 38.462 12.10 0.00 38.41 3.67
120 127 6.753279 ACATGCGTGTATTTATACTTGTACGT 59.247 34.615 10.57 0.00 36.63 3.57
121 128 7.914871 ACATGCGTGTATTTATACTTGTACGTA 59.085 33.333 10.57 0.00 36.63 3.57
122 129 8.744923 CATGCGTGTATTTATACTTGTACGTAA 58.255 33.333 0.00 0.00 33.90 3.18
123 130 8.680707 TGCGTGTATTTATACTTGTACGTAAA 57.319 30.769 0.00 0.00 33.90 2.01
125 132 8.050170 GCGTGTATTTATACTTGTACGTAAACC 58.950 37.037 0.00 0.00 33.90 3.27
131 138 3.128852 ACTTGTACGTAAACCATGGCA 57.871 42.857 13.04 0.00 0.00 4.92
132 139 3.478509 ACTTGTACGTAAACCATGGCAA 58.521 40.909 13.04 4.30 0.00 4.52
133 140 3.884091 ACTTGTACGTAAACCATGGCAAA 59.116 39.130 13.04 0.00 0.00 3.68
134 141 3.900388 TGTACGTAAACCATGGCAAAC 57.100 42.857 13.04 6.26 0.00 2.93
135 142 2.223611 TGTACGTAAACCATGGCAAACG 59.776 45.455 23.93 23.93 36.48 3.60
136 143 1.310904 ACGTAAACCATGGCAAACGT 58.689 45.000 24.97 24.97 38.61 3.99
137 144 1.264826 ACGTAAACCATGGCAAACGTC 59.735 47.619 24.97 6.12 39.11 4.34
138 145 1.723384 CGTAAACCATGGCAAACGTCG 60.723 52.381 13.04 4.33 0.00 5.12
139 146 0.875728 TAAACCATGGCAAACGTCGG 59.124 50.000 13.04 0.00 0.00 4.79
140 147 1.801309 AAACCATGGCAAACGTCGGG 61.801 55.000 13.04 0.00 0.00 5.14
141 148 4.114997 CCATGGCAAACGTCGGGC 62.115 66.667 0.00 6.09 0.00 6.13
152 159 4.397832 GTCGGGCCGGGCTTGTAA 62.398 66.667 28.80 0.00 0.00 2.41
153 160 3.638316 TCGGGCCGGGCTTGTAAA 61.638 61.111 28.80 0.00 0.00 2.01
154 161 2.673687 CGGGCCGGGCTTGTAAAA 60.674 61.111 28.80 0.00 0.00 1.52
155 162 2.696759 CGGGCCGGGCTTGTAAAAG 61.697 63.158 28.80 5.53 0.00 2.27
165 172 3.026630 GCTTGTAAAAGCCCAACCTTC 57.973 47.619 6.34 0.00 39.81 3.46
166 173 2.364002 GCTTGTAAAAGCCCAACCTTCA 59.636 45.455 6.34 0.00 39.81 3.02
170 177 5.208463 TGTAAAAGCCCAACCTTCATTTC 57.792 39.130 0.00 0.00 0.00 2.17
171 178 3.769739 AAAAGCCCAACCTTCATTTCC 57.230 42.857 0.00 0.00 0.00 3.13
172 179 1.644509 AAGCCCAACCTTCATTTCCC 58.355 50.000 0.00 0.00 0.00 3.97
176 183 1.276138 CCCAACCTTCATTTCCCAAGC 59.724 52.381 0.00 0.00 0.00 4.01
177 184 1.276138 CCAACCTTCATTTCCCAAGCC 59.724 52.381 0.00 0.00 0.00 4.35
178 185 1.276138 CAACCTTCATTTCCCAAGCCC 59.724 52.381 0.00 0.00 0.00 5.19
181 188 1.098050 CTTCATTTCCCAAGCCCGAG 58.902 55.000 0.00 0.00 0.00 4.63
183 190 0.035439 TCATTTCCCAAGCCCGAGTC 60.035 55.000 0.00 0.00 0.00 3.36
184 191 0.035056 CATTTCCCAAGCCCGAGTCT 60.035 55.000 0.00 0.00 0.00 3.24
185 192 0.035056 ATTTCCCAAGCCCGAGTCTG 60.035 55.000 0.00 0.00 0.00 3.51
186 193 2.124507 TTTCCCAAGCCCGAGTCTGG 62.125 60.000 0.00 0.00 0.00 3.86
193 200 4.148825 CCCGAGTCTGGCCCGAAG 62.149 72.222 0.00 0.00 0.00 3.79
194 201 4.821589 CCGAGTCTGGCCCGAAGC 62.822 72.222 0.00 0.00 42.60 3.86
204 211 1.153229 GCCCGAAGCCCGAAATACT 60.153 57.895 0.00 0.00 41.76 2.12
205 212 1.158484 GCCCGAAGCCCGAAATACTC 61.158 60.000 0.00 0.00 41.76 2.59
207 214 0.532196 CCGAAGCCCGAAATACTCCC 60.532 60.000 0.00 0.00 41.76 4.30
209 216 1.806623 CGAAGCCCGAAATACTCCCTG 60.807 57.143 0.00 0.00 41.76 4.45
210 217 1.209747 GAAGCCCGAAATACTCCCTGT 59.790 52.381 0.00 0.00 0.00 4.00
211 218 1.286248 AGCCCGAAATACTCCCTGTT 58.714 50.000 0.00 0.00 0.00 3.16
212 219 1.633945 AGCCCGAAATACTCCCTGTTT 59.366 47.619 0.00 0.00 0.00 2.83
213 220 2.041216 AGCCCGAAATACTCCCTGTTTT 59.959 45.455 0.00 0.00 0.00 2.43
214 221 2.422479 GCCCGAAATACTCCCTGTTTTC 59.578 50.000 0.00 0.00 0.00 2.29
215 222 3.681593 CCCGAAATACTCCCTGTTTTCA 58.318 45.455 0.00 0.00 31.88 2.69
217 224 4.156008 CCCGAAATACTCCCTGTTTTCAAG 59.844 45.833 0.00 0.00 31.88 3.02
218 225 4.379499 CCGAAATACTCCCTGTTTTCAAGC 60.379 45.833 0.00 0.00 31.88 4.01
219 226 4.379499 CGAAATACTCCCTGTTTTCAAGCC 60.379 45.833 0.00 0.00 31.88 4.35
220 227 2.579410 TACTCCCTGTTTTCAAGCCC 57.421 50.000 0.00 0.00 0.00 5.19
222 229 1.063266 ACTCCCTGTTTTCAAGCCCAA 60.063 47.619 0.00 0.00 0.00 4.12
223 230 1.615392 CTCCCTGTTTTCAAGCCCAAG 59.385 52.381 0.00 0.00 0.00 3.61
224 231 0.033920 CCCTGTTTTCAAGCCCAAGC 59.966 55.000 0.00 0.00 40.32 4.01
225 232 0.033920 CCTGTTTTCAAGCCCAAGCC 59.966 55.000 0.00 0.00 41.25 4.35
226 233 0.033920 CTGTTTTCAAGCCCAAGCCC 59.966 55.000 0.00 0.00 41.25 5.19
227 234 1.006220 GTTTTCAAGCCCAAGCCCG 60.006 57.895 0.00 0.00 41.25 6.13
228 235 2.206536 TTTTCAAGCCCAAGCCCGG 61.207 57.895 0.00 0.00 41.25 5.73
237 244 1.391933 CCCAAGCCCGGCCTTAAATC 61.392 60.000 5.55 0.00 0.00 2.17
238 245 0.682855 CCAAGCCCGGCCTTAAATCA 60.683 55.000 5.55 0.00 0.00 2.57
239 246 1.181786 CAAGCCCGGCCTTAAATCAA 58.818 50.000 5.55 0.00 0.00 2.57
240 247 1.134946 CAAGCCCGGCCTTAAATCAAG 59.865 52.381 5.55 0.00 0.00 3.02
242 249 1.037579 GCCCGGCCTTAAATCAAGCT 61.038 55.000 0.00 0.00 32.41 3.74
247 254 3.428045 CCGGCCTTAAATCAAGCTTGAAG 60.428 47.826 31.55 22.92 41.13 3.02
248 255 3.515630 GGCCTTAAATCAAGCTTGAAGC 58.484 45.455 31.55 23.71 41.13 3.86
249 256 3.515630 GCCTTAAATCAAGCTTGAAGCC 58.484 45.455 31.55 11.82 43.77 4.35
250 257 3.677148 GCCTTAAATCAAGCTTGAAGCCC 60.677 47.826 31.55 14.04 43.77 5.19
251 258 3.428045 CCTTAAATCAAGCTTGAAGCCCG 60.428 47.826 31.55 19.08 43.77 6.13
252 259 1.909700 AAATCAAGCTTGAAGCCCGA 58.090 45.000 31.55 11.01 43.77 5.14
253 260 1.909700 AATCAAGCTTGAAGCCCGAA 58.090 45.000 31.55 7.97 43.77 4.30
254 261 1.909700 ATCAAGCTTGAAGCCCGAAA 58.090 45.000 31.55 7.20 43.77 3.46
255 262 1.238439 TCAAGCTTGAAGCCCGAAAG 58.762 50.000 26.61 0.00 43.77 2.62
257 264 1.527433 AAGCTTGAAGCCCGAAAGCC 61.527 55.000 14.45 0.00 45.94 4.35
258 265 2.994671 GCTTGAAGCCCGAAAGCCC 61.995 63.158 5.74 0.00 40.32 5.19
259 266 2.671619 TTGAAGCCCGAAAGCCCG 60.672 61.111 0.00 0.00 0.00 6.13
273 280 4.540735 CCCGGCCCGAACGCTATT 62.541 66.667 3.71 0.00 0.00 1.73
275 282 2.110352 CCGGCCCGAACGCTATTTT 61.110 57.895 3.71 0.00 0.00 1.82
296 303 4.481930 TTTAGTGTACACATGTGCAAGC 57.518 40.909 27.06 13.41 42.05 4.01
297 304 1.238439 AGTGTACACATGTGCAAGCC 58.762 50.000 27.06 10.01 42.05 4.35
298 305 0.240945 GTGTACACATGTGCAAGCCC 59.759 55.000 25.68 7.75 42.05 5.19
299 306 0.179006 TGTACACATGTGCAAGCCCA 60.179 50.000 25.68 10.15 37.70 5.36
300 307 0.523072 GTACACATGTGCAAGCCCAG 59.477 55.000 25.68 0.00 0.00 4.45
301 308 1.243342 TACACATGTGCAAGCCCAGC 61.243 55.000 25.68 0.00 0.00 4.85
302 309 2.993264 ACATGTGCAAGCCCAGCC 60.993 61.111 0.00 0.00 0.00 4.85
303 310 3.766691 CATGTGCAAGCCCAGCCC 61.767 66.667 0.00 0.00 0.00 5.19
314 321 4.715523 CCAGCCCGAAGCCCGAAA 62.716 66.667 0.00 0.00 45.47 3.46
326 333 4.715523 CCGAAAGCCCGGCCTGAA 62.716 66.667 5.55 0.00 43.25 3.02
327 334 2.671619 CGAAAGCCCGGCCTGAAA 60.672 61.111 5.55 0.00 0.00 2.69
328 335 2.046285 CGAAAGCCCGGCCTGAAAT 61.046 57.895 5.55 0.00 0.00 2.17
329 336 0.746563 CGAAAGCCCGGCCTGAAATA 60.747 55.000 5.55 0.00 0.00 1.40
330 337 0.738975 GAAAGCCCGGCCTGAAATAC 59.261 55.000 5.55 0.00 0.00 1.89
331 338 0.039035 AAAGCCCGGCCTGAAATACA 59.961 50.000 5.55 0.00 0.00 2.29
332 339 0.394352 AAGCCCGGCCTGAAATACAG 60.394 55.000 5.55 0.00 45.36 2.74
352 359 2.276869 AAAAATGAAGCCCGAGCCC 58.723 52.632 0.00 0.00 41.25 5.19
353 360 0.541764 AAAAATGAAGCCCGAGCCCA 60.542 50.000 0.00 0.00 41.25 5.36
354 361 0.967380 AAAATGAAGCCCGAGCCCAG 60.967 55.000 0.00 0.00 41.25 4.45
364 371 2.797278 CGAGCCCAGCCCGAACTAT 61.797 63.158 0.00 0.00 0.00 2.12
365 372 1.069935 GAGCCCAGCCCGAACTATC 59.930 63.158 0.00 0.00 0.00 2.08
366 373 1.383248 AGCCCAGCCCGAACTATCT 60.383 57.895 0.00 0.00 0.00 1.98
367 374 0.983378 AGCCCAGCCCGAACTATCTT 60.983 55.000 0.00 0.00 0.00 2.40
368 375 0.107165 GCCCAGCCCGAACTATCTTT 60.107 55.000 0.00 0.00 0.00 2.52
369 376 1.954927 CCCAGCCCGAACTATCTTTC 58.045 55.000 0.00 0.00 0.00 2.62
370 377 1.571919 CCAGCCCGAACTATCTTTCG 58.428 55.000 0.00 0.00 46.46 3.46
376 383 2.295253 CGAACTATCTTTCGGGCTGT 57.705 50.000 0.00 0.00 43.79 4.40
377 384 3.431922 CGAACTATCTTTCGGGCTGTA 57.568 47.619 0.00 0.00 43.79 2.74
378 385 3.777478 CGAACTATCTTTCGGGCTGTAA 58.223 45.455 0.00 0.00 43.79 2.41
379 386 4.178540 CGAACTATCTTTCGGGCTGTAAA 58.821 43.478 0.00 0.00 43.79 2.01
381 388 5.445540 CGAACTATCTTTCGGGCTGTAAAAC 60.446 44.000 0.00 0.00 43.79 2.43
382 389 4.901868 ACTATCTTTCGGGCTGTAAAACA 58.098 39.130 0.00 0.00 0.00 2.83
384 391 4.766404 ATCTTTCGGGCTGTAAAACAAG 57.234 40.909 0.00 0.00 0.00 3.16
386 393 0.955905 TTCGGGCTGTAAAACAAGGC 59.044 50.000 0.00 0.00 0.00 4.35
387 394 0.891904 TCGGGCTGTAAAACAAGGCC 60.892 55.000 0.00 0.00 38.35 5.19
389 396 1.584495 GGCTGTAAAACAAGGCCCG 59.416 57.895 0.00 0.00 34.45 6.13
390 397 0.891904 GGCTGTAAAACAAGGCCCGA 60.892 55.000 0.00 0.00 34.45 5.14
391 398 0.521735 GCTGTAAAACAAGGCCCGAG 59.478 55.000 0.00 0.00 0.00 4.63
392 399 0.521735 CTGTAAAACAAGGCCCGAGC 59.478 55.000 0.00 0.00 38.76 5.03
404 411 4.659172 CCGAGCCTGGCCCAAACA 62.659 66.667 16.57 0.00 0.00 2.83
405 412 2.361610 CGAGCCTGGCCCAAACAT 60.362 61.111 16.57 0.00 0.00 2.71
406 413 2.409870 CGAGCCTGGCCCAAACATC 61.410 63.158 16.57 3.23 0.00 3.06
407 414 1.304381 GAGCCTGGCCCAAACATCA 60.304 57.895 16.57 0.00 0.00 3.07
408 415 0.899717 GAGCCTGGCCCAAACATCAA 60.900 55.000 16.57 0.00 0.00 2.57
409 416 0.901580 AGCCTGGCCCAAACATCAAG 60.902 55.000 16.57 0.00 0.00 3.02
410 417 1.593265 CCTGGCCCAAACATCAAGC 59.407 57.895 0.00 0.00 0.00 4.01
411 418 1.593265 CTGGCCCAAACATCAAGCC 59.407 57.895 0.00 0.00 44.13 4.35
412 419 1.891722 CTGGCCCAAACATCAAGCCC 61.892 60.000 0.00 0.00 43.18 5.19
413 420 2.573340 GCCCAAACATCAAGCCCG 59.427 61.111 0.00 0.00 0.00 6.13
414 421 1.976474 GCCCAAACATCAAGCCCGA 60.976 57.895 0.00 0.00 0.00 5.14
415 422 1.883021 CCCAAACATCAAGCCCGAC 59.117 57.895 0.00 0.00 0.00 4.79
416 423 1.595093 CCCAAACATCAAGCCCGACC 61.595 60.000 0.00 0.00 0.00 4.79
417 424 1.595093 CCAAACATCAAGCCCGACCC 61.595 60.000 0.00 0.00 0.00 4.46
418 425 1.674322 AAACATCAAGCCCGACCCG 60.674 57.895 0.00 0.00 0.00 5.28
438 445 3.370231 CCGGCCTGGGTTTTTCGG 61.370 66.667 0.00 0.00 0.00 4.30
439 446 3.370231 CGGCCTGGGTTTTTCGGG 61.370 66.667 0.00 0.00 0.00 5.14
442 449 3.370231 CCTGGGTTTTTCGGGCCG 61.370 66.667 22.51 22.51 0.00 6.13
443 450 2.281900 CTGGGTTTTTCGGGCCGA 60.282 61.111 27.46 27.46 0.00 5.54
444 451 2.281900 TGGGTTTTTCGGGCCGAG 60.282 61.111 29.30 0.00 37.14 4.63
445 452 3.744719 GGGTTTTTCGGGCCGAGC 61.745 66.667 29.30 17.12 37.14 5.03
446 453 2.671963 GGTTTTTCGGGCCGAGCT 60.672 61.111 29.30 0.00 37.14 4.09
447 454 2.561373 GTTTTTCGGGCCGAGCTG 59.439 61.111 29.30 0.00 37.14 4.24
448 455 2.112297 TTTTTCGGGCCGAGCTGT 59.888 55.556 29.30 0.00 37.14 4.40
449 456 1.964373 TTTTTCGGGCCGAGCTGTC 60.964 57.895 29.30 0.00 37.14 3.51
450 457 3.894547 TTTTCGGGCCGAGCTGTCC 62.895 63.158 29.30 0.00 37.14 4.02
459 466 4.864334 GAGCTGTCCATGCCCGGG 62.864 72.222 19.09 19.09 0.00 5.73
461 468 4.740822 GCTGTCCATGCCCGGGTT 62.741 66.667 24.63 7.40 0.00 4.11
462 469 2.035626 CTGTCCATGCCCGGGTTT 59.964 61.111 24.63 6.97 0.00 3.27
463 470 1.301623 CTGTCCATGCCCGGGTTTA 59.698 57.895 24.63 9.73 0.00 2.01
464 471 0.748005 CTGTCCATGCCCGGGTTTAG 60.748 60.000 24.63 9.46 0.00 1.85
486 493 0.870307 GTACGTATGGCGCTCACCAG 60.870 60.000 7.64 1.45 44.71 4.00
526 533 2.532854 ATCCCGGAGAGGATTGGTG 58.467 57.895 0.73 0.00 44.61 4.17
543 561 2.906389 TGGTGGATAGATATGGGCAGAC 59.094 50.000 0.00 0.00 0.00 3.51
614 648 5.202765 TCCACACCTCGTATTGTCCTATAA 58.797 41.667 0.00 0.00 0.00 0.98
646 693 6.925610 TTTTATCTGGATCTGGACGAATTG 57.074 37.500 0.00 0.00 0.00 2.32
704 755 9.086336 CAAAATTGAGCTGAGAAAAGTAAACAA 57.914 29.630 0.00 0.00 0.00 2.83
709 760 7.047891 TGAGCTGAGAAAAGTAAACAAGAGAA 58.952 34.615 0.00 0.00 0.00 2.87
711 762 7.275920 AGCTGAGAAAAGTAAACAAGAGAAGA 58.724 34.615 0.00 0.00 0.00 2.87
752 822 3.837578 TCCGTCCGGATCTGTAGC 58.162 61.111 7.81 0.00 39.76 3.58
753 823 1.226542 TCCGTCCGGATCTGTAGCT 59.773 57.895 7.81 0.00 39.76 3.32
754 824 0.818445 TCCGTCCGGATCTGTAGCTC 60.818 60.000 7.81 0.00 39.76 4.09
755 825 1.101635 CCGTCCGGATCTGTAGCTCA 61.102 60.000 7.81 0.00 37.50 4.26
756 826 0.738975 CGTCCGGATCTGTAGCTCAA 59.261 55.000 7.81 0.00 0.00 3.02
757 827 1.338337 CGTCCGGATCTGTAGCTCAAT 59.662 52.381 7.81 0.00 0.00 2.57
758 828 2.605823 CGTCCGGATCTGTAGCTCAATC 60.606 54.545 7.81 0.00 0.00 2.67
760 830 1.688735 CCGGATCTGTAGCTCAATCCA 59.311 52.381 0.00 0.00 35.48 3.41
761 831 2.103094 CCGGATCTGTAGCTCAATCCAA 59.897 50.000 0.00 0.00 35.48 3.53
762 832 3.244353 CCGGATCTGTAGCTCAATCCAAT 60.244 47.826 0.00 0.00 35.48 3.16
763 833 3.993081 CGGATCTGTAGCTCAATCCAATC 59.007 47.826 13.76 1.45 35.48 2.67
765 835 3.845781 TCTGTAGCTCAATCCAATCCC 57.154 47.619 0.00 0.00 0.00 3.85
766 836 3.387962 TCTGTAGCTCAATCCAATCCCT 58.612 45.455 0.00 0.00 0.00 4.20
773 850 1.209504 TCAATCCAATCCCTCCACGTC 59.790 52.381 0.00 0.00 0.00 4.34
782 859 2.187946 CTCCACGTCATCCAGCCC 59.812 66.667 0.00 0.00 0.00 5.19
813 890 1.135859 CAATCCAGCAAGAACACGAGC 60.136 52.381 0.00 0.00 0.00 5.03
815 892 2.171940 CAGCAAGAACACGAGCGC 59.828 61.111 0.00 0.00 0.00 5.92
818 895 4.430423 CAAGAACACGAGCGCGCC 62.430 66.667 30.33 18.51 42.48 6.53
826 903 0.248054 CACGAGCGCGCCAATTAATT 60.248 50.000 30.33 6.10 42.48 1.40
829 906 1.260561 CGAGCGCGCCAATTAATTAGT 59.739 47.619 30.33 3.57 0.00 2.24
836 914 4.608445 CGCGCCAATTAATTAGTAGCAGTC 60.608 45.833 0.00 0.00 0.00 3.51
904 986 0.820871 CACCTTCCTTCTCCTCTCCG 59.179 60.000 0.00 0.00 0.00 4.63
906 988 0.686112 CCTTCCTTCTCCTCTCCGCT 60.686 60.000 0.00 0.00 0.00 5.52
915 997 2.420890 CTCTCCGCTCATGCCCTC 59.579 66.667 0.00 0.00 35.36 4.30
916 998 2.042537 TCTCCGCTCATGCCCTCT 60.043 61.111 0.00 0.00 35.36 3.69
959 1041 1.876714 GCTTAATCTGACGCCGCGA 60.877 57.895 21.79 0.00 0.00 5.87
968 1054 4.958396 ACGCCGCGACGATCGATC 62.958 66.667 24.48 15.68 43.74 3.69
1056 1147 4.351938 TTCCTGGTGTCGCCGTCG 62.352 66.667 0.00 0.00 41.21 5.12
1404 1507 2.341176 GGTACGTGCCTTCCGTGT 59.659 61.111 16.23 0.00 39.22 4.49
1407 1510 0.233848 GTACGTGCCTTCCGTGTTTG 59.766 55.000 0.00 0.00 39.22 2.93
1408 1511 0.179078 TACGTGCCTTCCGTGTTTGT 60.179 50.000 0.00 0.00 39.22 2.83
1409 1512 0.179078 ACGTGCCTTCCGTGTTTGTA 60.179 50.000 0.00 0.00 37.12 2.41
1410 1513 0.233848 CGTGCCTTCCGTGTTTGTAC 59.766 55.000 0.00 0.00 0.00 2.90
1412 1515 1.877443 GTGCCTTCCGTGTTTGTACAT 59.123 47.619 0.00 0.00 36.50 2.29
1413 1516 3.068560 GTGCCTTCCGTGTTTGTACATA 58.931 45.455 0.00 0.00 36.50 2.29
1414 1517 3.068560 TGCCTTCCGTGTTTGTACATAC 58.931 45.455 9.27 9.27 36.50 2.39
1415 1518 3.244284 TGCCTTCCGTGTTTGTACATACT 60.244 43.478 16.00 0.00 36.50 2.12
1416 1519 3.749609 GCCTTCCGTGTTTGTACATACTT 59.250 43.478 16.00 0.00 36.50 2.24
1417 1520 4.214758 GCCTTCCGTGTTTGTACATACTTT 59.785 41.667 16.00 0.00 36.50 2.66
1418 1521 5.409214 GCCTTCCGTGTTTGTACATACTTTA 59.591 40.000 16.00 0.00 36.50 1.85
1419 1522 6.073112 GCCTTCCGTGTTTGTACATACTTTAA 60.073 38.462 16.00 6.14 36.50 1.52
1420 1523 7.361457 GCCTTCCGTGTTTGTACATACTTTAAT 60.361 37.037 16.00 0.00 36.50 1.40
1421 1524 8.508875 CCTTCCGTGTTTGTACATACTTTAATT 58.491 33.333 16.00 0.00 36.50 1.40
1422 1525 9.325150 CTTCCGTGTTTGTACATACTTTAATTG 57.675 33.333 16.00 1.02 36.50 2.32
1423 1526 8.380743 TCCGTGTTTGTACATACTTTAATTGT 57.619 30.769 16.00 0.00 36.50 2.71
1424 1527 8.497554 TCCGTGTTTGTACATACTTTAATTGTC 58.502 33.333 16.00 0.00 36.50 3.18
1426 1529 9.313323 CGTGTTTGTACATACTTTAATTGTCTG 57.687 33.333 16.00 0.00 36.50 3.51
1427 1530 9.113876 GTGTTTGTACATACTTTAATTGTCTGC 57.886 33.333 16.00 0.00 36.50 4.26
1429 1532 9.329913 GTTTGTACATACTTTAATTGTCTGCTG 57.670 33.333 8.97 0.00 0.00 4.41
1430 1533 7.609760 TGTACATACTTTAATTGTCTGCTGG 57.390 36.000 0.00 0.00 0.00 4.85
1433 1536 3.923017 ACTTTAATTGTCTGCTGGTGC 57.077 42.857 0.00 0.00 40.20 5.01
1434 1537 3.490348 ACTTTAATTGTCTGCTGGTGCT 58.510 40.909 0.00 0.00 40.48 4.40
1435 1538 3.891366 ACTTTAATTGTCTGCTGGTGCTT 59.109 39.130 0.00 0.00 40.48 3.91
1440 1543 1.005630 GTCTGCTGGTGCTTCGACT 60.006 57.895 0.00 0.00 40.48 4.18
1441 1544 1.005748 TCTGCTGGTGCTTCGACTG 60.006 57.895 0.00 0.00 40.48 3.51
1442 1545 2.666190 TGCTGGTGCTTCGACTGC 60.666 61.111 2.93 2.93 40.48 4.40
1443 1546 3.426568 GCTGGTGCTTCGACTGCC 61.427 66.667 7.07 0.00 36.03 4.85
1454 1557 0.107897 TCGACTGCCGCCATTAATGT 60.108 50.000 14.25 0.00 38.37 2.71
1456 1559 0.248621 GACTGCCGCCATTAATGTGC 60.249 55.000 14.25 14.75 0.00 4.57
1458 1561 1.308047 CTGCCGCCATTAATGTGCTA 58.692 50.000 19.86 10.10 0.00 3.49
1459 1562 1.675483 CTGCCGCCATTAATGTGCTAA 59.325 47.619 19.86 9.41 0.00 3.09
1472 1575 9.773328 CATTAATGTGCTAATAATAATCGTGGG 57.227 33.333 7.32 0.00 0.00 4.61
1485 1588 4.431416 AATCGTGGGCCAAGTATAATGA 57.569 40.909 19.02 0.56 0.00 2.57
1527 1631 2.746277 GGATCGGTGTGGTGTGGC 60.746 66.667 0.00 0.00 0.00 5.01
1634 1738 1.156736 CAACTGCCTCCAGGTAAACG 58.843 55.000 0.00 0.00 43.53 3.60
1636 1740 1.276622 ACTGCCTCCAGGTAAACGAT 58.723 50.000 0.00 0.00 43.53 3.73
1637 1741 2.463752 ACTGCCTCCAGGTAAACGATA 58.536 47.619 0.00 0.00 43.53 2.92
1638 1742 2.835764 ACTGCCTCCAGGTAAACGATAA 59.164 45.455 0.00 0.00 43.53 1.75
1642 1746 3.560068 GCCTCCAGGTAAACGATAACATG 59.440 47.826 0.00 0.00 37.57 3.21
1643 1747 4.127171 CCTCCAGGTAAACGATAACATGG 58.873 47.826 11.38 11.38 46.36 3.66
1650 1754 7.930217 CAGGTAAACGATAACATGGATTGATT 58.070 34.615 0.00 0.00 0.00 2.57
1652 1756 8.621286 AGGTAAACGATAACATGGATTGATTTC 58.379 33.333 0.00 0.00 0.00 2.17
1653 1757 7.860872 GGTAAACGATAACATGGATTGATTTCC 59.139 37.037 0.00 0.00 36.24 3.13
1668 1772 9.874205 GGATTGATTTCCACAAAATTCTATTCA 57.126 29.630 0.00 0.00 37.70 2.57
1670 1774 8.761575 TTGATTTCCACAAAATTCTATTCAGC 57.238 30.769 0.00 0.00 37.70 4.26
1671 1775 8.125978 TGATTTCCACAAAATTCTATTCAGCT 57.874 30.769 0.00 0.00 37.70 4.24
1672 1776 8.030692 TGATTTCCACAAAATTCTATTCAGCTG 58.969 33.333 7.63 7.63 37.70 4.24
1673 1777 6.899393 TTCCACAAAATTCTATTCAGCTGT 57.101 33.333 14.67 0.00 0.00 4.40
1675 1779 7.994425 TCCACAAAATTCTATTCAGCTGTTA 57.006 32.000 14.67 6.30 0.00 2.41
1676 1780 8.044060 TCCACAAAATTCTATTCAGCTGTTAG 57.956 34.615 14.67 15.40 0.00 2.34
1677 1781 6.749118 CCACAAAATTCTATTCAGCTGTTAGC 59.251 38.462 14.67 0.00 42.84 3.09
1687 1791 2.158959 GCTGTTAGCGTCGCACGAT 61.159 57.895 21.09 0.00 46.05 3.73
1688 1792 1.683790 GCTGTTAGCGTCGCACGATT 61.684 55.000 21.09 0.00 46.05 3.34
1689 1793 0.023732 CTGTTAGCGTCGCACGATTG 59.976 55.000 21.09 0.90 46.05 2.67
1690 1794 1.343821 GTTAGCGTCGCACGATTGG 59.656 57.895 21.09 0.00 46.05 3.16
1691 1795 1.080366 TTAGCGTCGCACGATTGGT 60.080 52.632 21.09 0.00 46.05 3.67
1692 1796 1.348538 TTAGCGTCGCACGATTGGTG 61.349 55.000 21.09 0.00 46.05 4.17
1693 1797 4.147322 GCGTCGCACGATTGGTGG 62.147 66.667 13.44 0.00 46.05 4.61
1694 1798 4.147322 CGTCGCACGATTGGTGGC 62.147 66.667 0.00 0.00 46.05 5.01
1700 1804 2.100846 CACGATTGGTGGCCTGATG 58.899 57.895 3.32 0.00 43.16 3.07
1701 1805 0.392863 CACGATTGGTGGCCTGATGA 60.393 55.000 3.32 0.00 43.16 2.92
1702 1806 0.548031 ACGATTGGTGGCCTGATGAT 59.452 50.000 3.32 0.00 0.00 2.45
1703 1807 1.233019 CGATTGGTGGCCTGATGATC 58.767 55.000 3.32 0.48 0.00 2.92
1704 1808 1.202734 CGATTGGTGGCCTGATGATCT 60.203 52.381 3.32 0.00 0.00 2.75
1705 1809 2.502295 GATTGGTGGCCTGATGATCTC 58.498 52.381 3.32 0.00 0.00 2.75
1706 1810 0.548031 TTGGTGGCCTGATGATCTCC 59.452 55.000 3.32 0.00 0.00 3.71
1707 1811 1.348008 TGGTGGCCTGATGATCTCCC 61.348 60.000 3.32 0.00 0.00 4.30
1708 1812 1.348008 GGTGGCCTGATGATCTCCCA 61.348 60.000 3.32 0.00 0.00 4.37
1709 1813 0.108207 GTGGCCTGATGATCTCCCAG 59.892 60.000 3.32 0.00 0.00 4.45
1716 1820 4.455606 CCTGATGATCTCCCAGGTTTTAC 58.544 47.826 15.77 0.00 41.81 2.01
1727 1831 7.166167 TCTCCCAGGTTTTACTGTAAAATCTC 58.834 38.462 27.47 19.04 43.61 2.75
1733 1837 8.936864 CAGGTTTTACTGTAAAATCTCTGGTAG 58.063 37.037 27.47 16.04 43.61 3.18
1734 1838 8.877195 AGGTTTTACTGTAAAATCTCTGGTAGA 58.123 33.333 25.59 1.89 43.61 2.59
1735 1839 8.933807 GGTTTTACTGTAAAATCTCTGGTAGAC 58.066 37.037 23.86 10.56 39.56 2.59
1736 1840 8.645487 GTTTTACTGTAAAATCTCTGGTAGACG 58.355 37.037 23.86 0.00 39.56 4.18
1739 1843 5.068234 TGTAAAATCTCTGGTAGACGGTG 57.932 43.478 0.00 0.00 36.93 4.94
1740 1844 4.525487 TGTAAAATCTCTGGTAGACGGTGT 59.475 41.667 0.00 0.00 36.93 4.16
1741 1845 5.711506 TGTAAAATCTCTGGTAGACGGTGTA 59.288 40.000 0.00 0.00 36.93 2.90
1742 1846 5.733620 AAAATCTCTGGTAGACGGTGTAA 57.266 39.130 0.00 0.00 36.93 2.41
1743 1847 4.715527 AATCTCTGGTAGACGGTGTAAC 57.284 45.455 0.00 0.00 36.93 2.50
1759 1863 5.705609 GTGTAACCATTGTGAAGTCCAAT 57.294 39.130 0.00 0.00 32.88 3.16
1760 1864 5.460646 GTGTAACCATTGTGAAGTCCAATG 58.539 41.667 12.12 12.12 45.56 2.82
1761 1865 5.009610 GTGTAACCATTGTGAAGTCCAATGT 59.990 40.000 15.37 6.43 44.87 2.71
1762 1866 5.596361 TGTAACCATTGTGAAGTCCAATGTT 59.404 36.000 15.37 12.87 44.87 2.71
1763 1867 6.773200 TGTAACCATTGTGAAGTCCAATGTTA 59.227 34.615 15.37 12.29 44.87 2.41
1764 1868 6.723298 AACCATTGTGAAGTCCAATGTTAA 57.277 33.333 15.37 0.00 44.87 2.01
1765 1869 6.916360 ACCATTGTGAAGTCCAATGTTAAT 57.084 33.333 15.37 0.00 44.87 1.40
1766 1870 6.690530 ACCATTGTGAAGTCCAATGTTAATG 58.309 36.000 15.37 0.00 44.87 1.90
1767 1871 6.267471 ACCATTGTGAAGTCCAATGTTAATGT 59.733 34.615 15.37 7.78 44.87 2.71
1768 1872 7.450014 ACCATTGTGAAGTCCAATGTTAATGTA 59.550 33.333 15.37 0.00 44.87 2.29
1769 1873 8.303156 CCATTGTGAAGTCCAATGTTAATGTAA 58.697 33.333 15.37 0.00 44.87 2.41
1770 1874 9.689976 CATTGTGAAGTCCAATGTTAATGTAAA 57.310 29.630 11.37 0.00 42.59 2.01
1771 1875 9.691362 ATTGTGAAGTCCAATGTTAATGTAAAC 57.309 29.630 0.00 0.00 31.52 2.01
1772 1876 7.653647 TGTGAAGTCCAATGTTAATGTAAACC 58.346 34.615 0.00 0.00 0.00 3.27
1773 1877 7.285629 TGTGAAGTCCAATGTTAATGTAAACCA 59.714 33.333 0.00 0.00 0.00 3.67
1774 1878 7.807907 GTGAAGTCCAATGTTAATGTAAACCAG 59.192 37.037 0.00 0.00 0.00 4.00
1775 1879 7.721842 TGAAGTCCAATGTTAATGTAAACCAGA 59.278 33.333 0.00 0.00 0.00 3.86
1776 1880 8.472007 AAGTCCAATGTTAATGTAAACCAGAA 57.528 30.769 0.00 0.00 0.00 3.02
1777 1881 8.472007 AGTCCAATGTTAATGTAAACCAGAAA 57.528 30.769 0.00 0.00 0.00 2.52
1778 1882 8.357402 AGTCCAATGTTAATGTAAACCAGAAAC 58.643 33.333 0.00 0.00 0.00 2.78
1779 1883 8.138712 GTCCAATGTTAATGTAAACCAGAAACA 58.861 33.333 0.00 0.00 36.58 2.83
1780 1884 8.865090 TCCAATGTTAATGTAAACCAGAAACAT 58.135 29.630 0.00 0.00 40.95 2.71
1781 1885 9.487790 CCAATGTTAATGTAAACCAGAAACATT 57.512 29.630 5.05 5.05 44.70 2.71
1783 1887 7.938563 TGTTAATGTAAACCAGAAACATTGC 57.061 32.000 9.53 4.36 42.28 3.56
1784 1888 7.492524 TGTTAATGTAAACCAGAAACATTGCA 58.507 30.769 9.53 6.38 42.28 4.08
1785 1889 7.981789 TGTTAATGTAAACCAGAAACATTGCAA 59.018 29.630 0.00 0.00 42.28 4.08
1786 1890 6.843069 AATGTAAACCAGAAACATTGCAAC 57.157 33.333 0.00 0.00 41.14 4.17
1787 1891 5.330455 TGTAAACCAGAAACATTGCAACA 57.670 34.783 0.00 0.00 0.00 3.33
1788 1892 5.911752 TGTAAACCAGAAACATTGCAACAT 58.088 33.333 0.00 0.00 0.00 2.71
1789 1893 7.043961 TGTAAACCAGAAACATTGCAACATA 57.956 32.000 0.00 0.00 0.00 2.29
1790 1894 6.920758 TGTAAACCAGAAACATTGCAACATAC 59.079 34.615 0.00 0.00 0.00 2.39
1791 1895 5.528043 AACCAGAAACATTGCAACATACA 57.472 34.783 0.00 0.00 0.00 2.29
1792 1896 5.125100 ACCAGAAACATTGCAACATACAG 57.875 39.130 0.00 0.00 0.00 2.74
1793 1897 4.584325 ACCAGAAACATTGCAACATACAGT 59.416 37.500 0.00 0.00 0.00 3.55
1794 1898 5.767665 ACCAGAAACATTGCAACATACAGTA 59.232 36.000 0.00 0.00 0.00 2.74
1795 1899 6.434028 ACCAGAAACATTGCAACATACAGTAT 59.566 34.615 0.00 0.00 0.00 2.12
1796 1900 7.609918 ACCAGAAACATTGCAACATACAGTATA 59.390 33.333 0.00 0.00 0.00 1.47
1797 1901 8.623903 CCAGAAACATTGCAACATACAGTATAT 58.376 33.333 0.00 0.00 0.00 0.86
1807 1911 8.729756 TGCAACATACAGTATATAAATGATGGC 58.270 33.333 0.00 0.00 0.00 4.40
1808 1912 8.729756 GCAACATACAGTATATAAATGATGGCA 58.270 33.333 0.00 0.00 0.00 4.92
1824 1928 3.326836 TGGCACAAATAGATCGTGTCA 57.673 42.857 1.45 1.45 42.59 3.58
1825 1929 3.261580 TGGCACAAATAGATCGTGTCAG 58.738 45.455 1.45 0.00 40.14 3.51
1826 1930 3.056179 TGGCACAAATAGATCGTGTCAGA 60.056 43.478 1.45 0.00 40.14 3.27
1827 1931 3.932710 GGCACAAATAGATCGTGTCAGAA 59.067 43.478 0.00 0.00 35.36 3.02
1828 1932 4.391830 GGCACAAATAGATCGTGTCAGAAA 59.608 41.667 0.00 0.00 35.36 2.52
1829 1933 5.316770 GCACAAATAGATCGTGTCAGAAAC 58.683 41.667 0.00 0.00 33.13 2.78
1830 1934 5.120830 GCACAAATAGATCGTGTCAGAAACT 59.879 40.000 0.00 0.00 33.13 2.66
1831 1935 6.528826 CACAAATAGATCGTGTCAGAAACTG 58.471 40.000 0.00 0.00 0.00 3.16
1832 1936 6.366061 CACAAATAGATCGTGTCAGAAACTGA 59.634 38.462 0.00 0.00 38.25 3.41
1833 1937 6.929049 ACAAATAGATCGTGTCAGAAACTGAA 59.071 34.615 2.98 0.00 42.46 3.02
1834 1938 7.441157 ACAAATAGATCGTGTCAGAAACTGAAA 59.559 33.333 2.98 0.00 42.46 2.69
1835 1939 6.952935 ATAGATCGTGTCAGAAACTGAAAC 57.047 37.500 10.88 10.88 43.24 2.78
1836 1940 4.693283 AGATCGTGTCAGAAACTGAAACA 58.307 39.130 18.20 8.81 46.01 2.83
1837 1941 5.116180 AGATCGTGTCAGAAACTGAAACAA 58.884 37.500 18.20 4.44 46.01 2.83
1838 1942 5.584649 AGATCGTGTCAGAAACTGAAACAAA 59.415 36.000 18.20 8.86 46.01 2.83
1839 1943 5.614923 TCGTGTCAGAAACTGAAACAAAA 57.385 34.783 18.20 4.56 46.01 2.44
1840 1944 6.189677 TCGTGTCAGAAACTGAAACAAAAT 57.810 33.333 18.20 0.00 46.01 1.82
1841 1945 6.027131 TCGTGTCAGAAACTGAAACAAAATG 58.973 36.000 18.20 5.61 46.01 2.32
1842 1946 5.799936 CGTGTCAGAAACTGAAACAAAATGT 59.200 36.000 18.20 0.00 46.01 2.71
1843 1947 6.307800 CGTGTCAGAAACTGAAACAAAATGTT 59.692 34.615 18.20 0.00 46.01 2.71
1857 1961 7.764695 AACAAAATGTTTACCTTAACTGTGC 57.235 32.000 0.00 0.00 37.26 4.57
1858 1962 6.868622 ACAAAATGTTTACCTTAACTGTGCA 58.131 32.000 0.00 0.00 0.00 4.57
1859 1963 6.754675 ACAAAATGTTTACCTTAACTGTGCAC 59.245 34.615 10.75 10.75 0.00 4.57
1860 1964 5.447624 AATGTTTACCTTAACTGTGCACC 57.552 39.130 15.69 0.00 0.00 5.01
1861 1965 4.159244 TGTTTACCTTAACTGTGCACCT 57.841 40.909 15.69 1.03 0.00 4.00
1862 1966 4.131596 TGTTTACCTTAACTGTGCACCTC 58.868 43.478 15.69 0.00 0.00 3.85
1870 1974 1.600076 CTGTGCACCTCTGCTTGCT 60.600 57.895 15.69 0.00 44.57 3.91
1923 2027 6.284891 AGCATTGCACAACTAATAATGGTT 57.715 33.333 11.91 0.00 36.42 3.67
1941 2045 2.866762 GGTTGCAGGAATAGATCGTGTC 59.133 50.000 0.00 0.00 44.07 3.67
2010 2114 6.721668 AGCTATGTGCCTAACTGATATGTCTA 59.278 38.462 0.00 0.00 44.23 2.59
2030 2134 2.483014 TTGCACCTTGGCTATACGTT 57.517 45.000 0.00 0.00 34.04 3.99
2036 2140 4.260620 GCACCTTGGCTATACGTTTACATG 60.261 45.833 0.00 0.00 0.00 3.21
2127 2231 3.749373 GTCGCCGTCGTGTTGTCG 61.749 66.667 0.00 0.00 36.96 4.35
2212 2316 0.824109 CTTCGGCTACACCATCCTCA 59.176 55.000 0.00 0.00 39.03 3.86
2214 2318 2.375014 TCGGCTACACCATCCTCATA 57.625 50.000 0.00 0.00 39.03 2.15
2217 2321 2.416027 CGGCTACACCATCCTCATATCG 60.416 54.545 0.00 0.00 39.03 2.92
2247 2367 0.468226 TTCGGGCAGGTATGTGATCC 59.532 55.000 0.00 0.00 0.00 3.36
2284 2407 6.360414 CGTGTTTACGTCTATGTTGTACTTGA 59.640 38.462 0.00 0.00 44.99 3.02
2397 2539 0.103208 AAGATTACTCGCTGAGCCCG 59.897 55.000 0.00 0.00 32.04 6.13
2568 2710 3.578716 TGGTCTTCTTCACCTTCTACCTG 59.421 47.826 0.00 0.00 34.66 4.00
2841 2983 1.957186 GACCTTGTACGTTGCGGCA 60.957 57.895 0.00 0.00 0.00 5.69
3082 3224 3.263503 CTCGACGCCGGACAGTTCA 62.264 63.158 5.05 0.00 36.24 3.18
3124 3266 6.712095 TGTCATCAGCTGAATTAGTTTCTTGT 59.288 34.615 22.50 0.00 35.07 3.16
3126 3268 6.372659 TCATCAGCTGAATTAGTTTCTTGTCC 59.627 38.462 22.50 0.00 35.23 4.02
3128 3270 4.156739 CAGCTGAATTAGTTTCTTGTCCCC 59.843 45.833 8.42 0.00 35.23 4.81
3130 3272 4.767409 GCTGAATTAGTTTCTTGTCCCCTT 59.233 41.667 0.00 0.00 35.23 3.95
3136 3278 4.100279 AGTTTCTTGTCCCCTTTGTAGG 57.900 45.455 0.00 0.00 41.60 3.18
3160 3302 8.981659 AGGTCATTTTATCATTTTTAGGGGAAG 58.018 33.333 0.00 0.00 0.00 3.46
3193 3335 2.667473 TCTCAACTAAAGTAGGCCGC 57.333 50.000 0.00 0.00 0.00 6.53
3194 3336 1.135199 TCTCAACTAAAGTAGGCCGCG 60.135 52.381 0.00 0.00 0.00 6.46
3196 3338 1.808390 AACTAAAGTAGGCCGCGCG 60.808 57.895 25.67 25.67 0.00 6.86
3198 3340 2.507547 TAAAGTAGGCCGCGCGTG 60.508 61.111 29.95 20.72 0.00 5.34
3218 3360 2.238646 TGGACCATCTACCACACAATCC 59.761 50.000 0.00 0.00 0.00 3.01
3219 3361 2.238646 GGACCATCTACCACACAATCCA 59.761 50.000 0.00 0.00 0.00 3.41
3220 3362 3.308117 GGACCATCTACCACACAATCCAA 60.308 47.826 0.00 0.00 0.00 3.53
3221 3363 4.331968 GACCATCTACCACACAATCCAAA 58.668 43.478 0.00 0.00 0.00 3.28
3240 3382 9.745018 AATCCAAATCATCGAATATATGGTTCT 57.255 29.630 9.00 0.00 27.54 3.01
3277 3419 5.122869 GCTGAATATTTCTCTGAGCAACACA 59.877 40.000 0.00 0.00 0.00 3.72
3278 3420 6.348786 GCTGAATATTTCTCTGAGCAACACAA 60.349 38.462 0.00 0.00 0.00 3.33
3284 3427 5.490139 TTCTCTGAGCAACACAAAAAGAG 57.510 39.130 0.00 0.00 0.00 2.85
3444 3606 1.137872 GATCAGGTCCAGCTACACAGG 59.862 57.143 0.00 0.00 0.00 4.00
3448 3610 1.544825 GGTCCAGCTACACAGGCTCA 61.545 60.000 0.00 0.00 38.03 4.26
3453 3615 2.616256 CCAGCTACACAGGCTCATTTCA 60.616 50.000 0.00 0.00 38.03 2.69
3469 3631 8.606602 GGCTCATTTCAAAACAATGGAATAATC 58.393 33.333 0.00 0.00 33.17 1.75
3471 3633 8.700722 TCATTTCAAAACAATGGAATAATCGG 57.299 30.769 0.00 0.00 33.17 4.18
3503 3668 7.683746 TCATAATATCACATCACAACACAACG 58.316 34.615 0.00 0.00 0.00 4.10
3508 3673 2.283086 CACATCACAACACAACGTACGT 59.717 45.455 16.72 16.72 0.00 3.57
3519 3684 1.872313 CAACGTACGTAGGGGCAAAAA 59.128 47.619 23.12 0.00 0.00 1.94
3521 3686 1.344114 ACGTACGTAGGGGCAAAAAGA 59.656 47.619 21.41 0.00 0.00 2.52
3531 3696 1.412343 GGGCAAAAAGACCTTCAGCAA 59.588 47.619 0.00 0.00 44.70 3.91
3561 3733 6.035005 AGACAATAACGACATGATGAACTTCG 59.965 38.462 0.00 0.00 35.80 3.79
3589 3761 8.236586 TGCACATAAAGAACACATGAATAACTC 58.763 33.333 0.00 0.00 0.00 3.01
3628 3801 5.163237 GGGTCCAGCTTACAGTATCCAAATA 60.163 44.000 0.00 0.00 0.00 1.40
3629 3802 5.758784 GGTCCAGCTTACAGTATCCAAATAC 59.241 44.000 0.00 0.00 38.45 1.89
3634 3807 7.189512 CAGCTTACAGTATCCAAATACTTTGC 58.810 38.462 0.00 0.00 44.62 3.68
3636 3809 6.036735 GCTTACAGTATCCAAATACTTTGCGA 59.963 38.462 0.00 0.00 44.62 5.10
3653 3826 6.203915 ACTTTGCGAAAATTATTTTTGGTCCC 59.796 34.615 16.63 3.80 35.20 4.46
3666 3839 4.530857 GTCCCGGACTCATGGCGG 62.531 72.222 10.59 0.00 0.00 6.13
3832 4010 5.673514 TCATGTATTTCTAGCTCATGCACA 58.326 37.500 0.00 0.00 42.74 4.57
3879 4057 4.772886 AGAGTGTACTTCCAACTTGGTT 57.227 40.909 7.72 0.00 39.03 3.67
3891 5064 2.067365 ACTTGGTTGGAGGGTCAAAC 57.933 50.000 0.00 0.00 35.08 2.93
3897 5070 3.655777 TGGTTGGAGGGTCAAACTATCTT 59.344 43.478 0.00 0.00 35.51 2.40
3902 5075 7.094334 GGTTGGAGGGTCAAACTATCTTAAAAG 60.094 40.741 0.00 0.00 32.02 2.27
3905 5078 8.002459 TGGAGGGTCAAACTATCTTAAAAGTTT 58.998 33.333 5.03 5.03 44.62 2.66
3934 5107 9.385902 CCGAGTTTGTGCTAAAATATATCAATG 57.614 33.333 0.00 0.00 0.00 2.82
4005 5179 7.496529 TCTAATGCTACTAATTTGATGGCAC 57.503 36.000 0.00 0.00 0.00 5.01
4079 5560 7.981142 TGACTTTTCGACAAAGTTGAAAGTAT 58.019 30.769 19.60 3.61 43.82 2.12
4082 5563 9.106070 ACTTTTCGACAAAGTTGAAAGTATACT 57.894 29.630 15.47 0.00 43.82 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.489785 GGCTTGTCCTATGTTTATCGACG 59.510 47.826 0.00 0.00 0.00 5.12
5 6 5.116180 TCTTGGCTTGTCCTATGTTTATCG 58.884 41.667 0.00 0.00 35.26 2.92
13 14 4.593956 CTTCCTTTCTTGGCTTGTCCTAT 58.406 43.478 0.00 0.00 35.26 2.57
119 126 1.400500 CCGACGTTTGCCATGGTTTAC 60.400 52.381 14.67 7.81 0.00 2.01
120 127 0.875728 CCGACGTTTGCCATGGTTTA 59.124 50.000 14.67 0.00 0.00 2.01
121 128 1.657556 CCGACGTTTGCCATGGTTT 59.342 52.632 14.67 0.00 0.00 3.27
122 129 2.265182 CCCGACGTTTGCCATGGTT 61.265 57.895 14.67 0.00 0.00 3.67
123 130 2.671619 CCCGACGTTTGCCATGGT 60.672 61.111 14.67 0.00 0.00 3.55
125 132 4.114997 GGCCCGACGTTTGCCATG 62.115 66.667 16.25 0.00 44.70 3.66
135 142 3.905437 TTTACAAGCCCGGCCCGAC 62.905 63.158 3.71 0.00 0.00 4.79
136 143 3.193469 TTTTACAAGCCCGGCCCGA 62.193 57.895 3.71 0.00 0.00 5.14
137 144 2.673687 TTTTACAAGCCCGGCCCG 60.674 61.111 5.55 0.00 0.00 6.13
138 145 3.284336 CTTTTACAAGCCCGGCCC 58.716 61.111 5.55 0.00 0.00 5.80
146 153 4.871933 ATGAAGGTTGGGCTTTTACAAG 57.128 40.909 0.00 0.00 0.00 3.16
147 154 5.454045 GGAAATGAAGGTTGGGCTTTTACAA 60.454 40.000 0.00 0.00 0.00 2.41
148 155 4.039852 GGAAATGAAGGTTGGGCTTTTACA 59.960 41.667 0.00 0.00 0.00 2.41
151 158 2.371841 GGGAAATGAAGGTTGGGCTTTT 59.628 45.455 0.00 0.00 0.00 2.27
152 159 1.977854 GGGAAATGAAGGTTGGGCTTT 59.022 47.619 0.00 0.00 0.00 3.51
153 160 1.132881 TGGGAAATGAAGGTTGGGCTT 60.133 47.619 0.00 0.00 0.00 4.35
154 161 0.486879 TGGGAAATGAAGGTTGGGCT 59.513 50.000 0.00 0.00 0.00 5.19
155 162 1.276138 CTTGGGAAATGAAGGTTGGGC 59.724 52.381 0.00 0.00 0.00 5.36
157 164 1.276138 GGCTTGGGAAATGAAGGTTGG 59.724 52.381 0.00 0.00 0.00 3.77
158 165 1.276138 GGGCTTGGGAAATGAAGGTTG 59.724 52.381 0.00 0.00 0.00 3.77
160 167 0.611896 CGGGCTTGGGAAATGAAGGT 60.612 55.000 0.00 0.00 0.00 3.50
161 168 0.323360 TCGGGCTTGGGAAATGAAGG 60.323 55.000 0.00 0.00 0.00 3.46
163 170 0.404040 ACTCGGGCTTGGGAAATGAA 59.596 50.000 0.00 0.00 0.00 2.57
164 171 0.035439 GACTCGGGCTTGGGAAATGA 60.035 55.000 0.00 0.00 0.00 2.57
165 172 0.035056 AGACTCGGGCTTGGGAAATG 60.035 55.000 0.00 0.00 0.00 2.32
166 173 0.035056 CAGACTCGGGCTTGGGAAAT 60.035 55.000 0.00 0.00 0.00 2.17
176 183 4.148825 CTTCGGGCCAGACTCGGG 62.149 72.222 4.56 0.00 0.00 5.14
177 184 4.821589 GCTTCGGGCCAGACTCGG 62.822 72.222 4.56 0.00 34.27 4.63
186 193 1.153229 AGTATTTCGGGCTTCGGGC 60.153 57.895 0.75 0.00 39.77 6.13
187 194 0.532196 GGAGTATTTCGGGCTTCGGG 60.532 60.000 0.75 0.00 39.77 5.14
188 195 0.532196 GGGAGTATTTCGGGCTTCGG 60.532 60.000 0.75 0.00 39.77 4.30
189 196 0.464452 AGGGAGTATTTCGGGCTTCG 59.536 55.000 0.00 0.00 40.90 3.79
190 197 1.209747 ACAGGGAGTATTTCGGGCTTC 59.790 52.381 0.00 0.00 0.00 3.86
192 199 1.286248 AACAGGGAGTATTTCGGGCT 58.714 50.000 0.00 0.00 0.00 5.19
193 200 2.124277 AAACAGGGAGTATTTCGGGC 57.876 50.000 0.00 0.00 0.00 6.13
194 201 3.681593 TGAAAACAGGGAGTATTTCGGG 58.318 45.455 0.00 0.00 33.65 5.14
195 202 4.379499 GCTTGAAAACAGGGAGTATTTCGG 60.379 45.833 0.00 0.00 33.65 4.30
196 203 4.379499 GGCTTGAAAACAGGGAGTATTTCG 60.379 45.833 0.00 0.00 33.65 3.46
197 204 4.082190 GGGCTTGAAAACAGGGAGTATTTC 60.082 45.833 0.00 0.00 32.61 2.17
200 207 2.378547 TGGGCTTGAAAACAGGGAGTAT 59.621 45.455 0.00 0.00 0.00 2.12
201 208 1.777878 TGGGCTTGAAAACAGGGAGTA 59.222 47.619 0.00 0.00 0.00 2.59
202 209 0.555769 TGGGCTTGAAAACAGGGAGT 59.444 50.000 0.00 0.00 0.00 3.85
204 211 1.703411 CTTGGGCTTGAAAACAGGGA 58.297 50.000 0.00 0.00 0.00 4.20
205 212 0.033920 GCTTGGGCTTGAAAACAGGG 59.966 55.000 0.00 0.00 35.22 4.45
207 214 0.033920 GGGCTTGGGCTTGAAAACAG 59.966 55.000 0.00 0.00 38.73 3.16
209 216 1.006220 CGGGCTTGGGCTTGAAAAC 60.006 57.895 0.00 0.00 38.73 2.43
210 217 2.206536 CCGGGCTTGGGCTTGAAAA 61.207 57.895 0.00 0.00 38.73 2.29
211 218 2.600173 CCGGGCTTGGGCTTGAAA 60.600 61.111 0.00 0.00 38.73 2.69
218 225 1.381191 ATTTAAGGCCGGGCTTGGG 60.381 57.895 43.78 0.17 0.00 4.12
219 226 0.682855 TGATTTAAGGCCGGGCTTGG 60.683 55.000 43.78 1.00 0.00 3.61
220 227 1.134946 CTTGATTTAAGGCCGGGCTTG 59.865 52.381 43.78 26.32 32.56 4.01
222 229 1.037579 GCTTGATTTAAGGCCGGGCT 61.038 55.000 27.45 27.45 36.87 5.19
223 230 1.037579 AGCTTGATTTAAGGCCGGGC 61.038 55.000 22.67 22.67 36.87 6.13
224 231 1.134946 CAAGCTTGATTTAAGGCCGGG 59.865 52.381 22.31 0.00 36.87 5.73
225 232 2.091541 TCAAGCTTGATTTAAGGCCGG 58.908 47.619 25.16 0.00 36.87 6.13
226 233 3.762779 CTTCAAGCTTGATTTAAGGCCG 58.237 45.455 28.89 6.45 37.00 6.13
227 234 3.515630 GCTTCAAGCTTGATTTAAGGCC 58.484 45.455 28.89 8.53 38.45 5.19
228 235 3.515630 GGCTTCAAGCTTGATTTAAGGC 58.484 45.455 28.89 27.69 41.99 4.35
229 236 3.428045 CGGGCTTCAAGCTTGATTTAAGG 60.428 47.826 28.89 13.43 41.99 2.69
230 237 3.440173 TCGGGCTTCAAGCTTGATTTAAG 59.560 43.478 28.89 22.69 41.99 1.85
233 240 1.909700 TCGGGCTTCAAGCTTGATTT 58.090 45.000 28.89 0.00 41.99 2.17
237 244 0.387750 GCTTTCGGGCTTCAAGCTTG 60.388 55.000 20.81 20.81 41.99 4.01
238 245 1.527433 GGCTTTCGGGCTTCAAGCTT 61.527 55.000 9.83 0.00 42.24 3.74
239 246 1.973812 GGCTTTCGGGCTTCAAGCT 60.974 57.895 9.83 0.00 42.24 3.74
240 247 2.568612 GGCTTTCGGGCTTCAAGC 59.431 61.111 0.00 0.00 41.93 4.01
242 249 2.671619 CGGGCTTTCGGGCTTCAA 60.672 61.111 0.00 0.00 40.65 2.69
257 264 1.650314 AAAAATAGCGTTCGGGCCGG 61.650 55.000 27.98 11.59 0.00 6.13
258 265 1.798087 AAAAATAGCGTTCGGGCCG 59.202 52.632 22.51 22.51 0.00 6.13
273 280 5.277825 GCTTGCACATGTGTACACTAAAAA 58.722 37.500 26.01 6.50 0.00 1.94
275 282 3.252215 GGCTTGCACATGTGTACACTAAA 59.748 43.478 26.01 7.27 0.00 1.85
281 288 0.523072 CTGGGCTTGCACATGTGTAC 59.477 55.000 26.01 11.73 0.00 2.90
283 290 2.567497 GCTGGGCTTGCACATGTGT 61.567 57.895 26.01 0.00 0.00 3.72
284 291 2.260434 GCTGGGCTTGCACATGTG 59.740 61.111 21.83 21.83 0.00 3.21
285 292 2.993264 GGCTGGGCTTGCACATGT 60.993 61.111 0.00 0.00 0.00 3.21
286 293 3.766691 GGGCTGGGCTTGCACATG 61.767 66.667 0.00 0.00 33.38 3.21
297 304 4.715523 TTTCGGGCTTCGGGCTGG 62.716 66.667 0.00 0.00 45.60 4.85
298 305 3.127533 CTTTCGGGCTTCGGGCTG 61.128 66.667 0.00 0.00 46.74 4.85
310 317 0.746563 TATTTCAGGCCGGGCTTTCG 60.747 55.000 30.73 18.05 0.00 3.46
311 318 0.738975 GTATTTCAGGCCGGGCTTTC 59.261 55.000 30.73 8.15 0.00 2.62
312 319 0.039035 TGTATTTCAGGCCGGGCTTT 59.961 50.000 30.73 15.73 0.00 3.51
313 320 0.394352 CTGTATTTCAGGCCGGGCTT 60.394 55.000 30.73 17.05 40.23 4.35
314 321 1.224592 CTGTATTTCAGGCCGGGCT 59.775 57.895 27.45 27.45 40.23 5.19
316 323 2.122783 TTTCTGTATTTCAGGCCGGG 57.877 50.000 2.18 0.00 43.76 5.73
334 341 0.541764 TGGGCTCGGGCTTCATTTTT 60.542 50.000 7.48 0.00 38.73 1.94
335 342 0.967380 CTGGGCTCGGGCTTCATTTT 60.967 55.000 7.48 0.00 38.73 1.82
337 344 2.273449 CTGGGCTCGGGCTTCATT 59.727 61.111 7.48 0.00 38.73 2.57
338 345 4.496336 GCTGGGCTCGGGCTTCAT 62.496 66.667 7.48 0.00 38.73 2.57
348 355 0.983378 AAGATAGTTCGGGCTGGGCT 60.983 55.000 0.00 0.00 0.00 5.19
349 356 0.107165 AAAGATAGTTCGGGCTGGGC 60.107 55.000 0.00 0.00 0.00 5.36
350 357 1.806623 CGAAAGATAGTTCGGGCTGGG 60.807 57.143 0.00 0.00 45.21 4.45
351 358 1.571919 CGAAAGATAGTTCGGGCTGG 58.428 55.000 0.00 0.00 45.21 4.85
359 366 5.310451 TGTTTTACAGCCCGAAAGATAGTT 58.690 37.500 0.00 0.00 0.00 2.24
361 368 5.163754 CCTTGTTTTACAGCCCGAAAGATAG 60.164 44.000 0.00 0.00 0.00 2.08
364 371 2.882137 CCTTGTTTTACAGCCCGAAAGA 59.118 45.455 0.00 0.00 0.00 2.52
365 372 2.607038 GCCTTGTTTTACAGCCCGAAAG 60.607 50.000 0.00 0.00 0.00 2.62
366 373 1.338655 GCCTTGTTTTACAGCCCGAAA 59.661 47.619 0.00 0.00 0.00 3.46
367 374 0.955905 GCCTTGTTTTACAGCCCGAA 59.044 50.000 0.00 0.00 0.00 4.30
368 375 0.891904 GGCCTTGTTTTACAGCCCGA 60.892 55.000 0.00 0.00 34.45 5.14
369 376 1.584495 GGCCTTGTTTTACAGCCCG 59.416 57.895 0.00 0.00 34.45 6.13
371 378 0.891904 TCGGGCCTTGTTTTACAGCC 60.892 55.000 0.84 2.43 38.35 4.85
373 380 0.521735 GCTCGGGCCTTGTTTTACAG 59.478 55.000 0.84 0.00 0.00 2.74
374 381 2.636299 GCTCGGGCCTTGTTTTACA 58.364 52.632 0.84 0.00 0.00 2.41
387 394 3.944250 ATGTTTGGGCCAGGCTCGG 62.944 63.158 12.43 0.00 0.00 4.63
388 395 2.361610 ATGTTTGGGCCAGGCTCG 60.362 61.111 12.43 0.00 0.00 5.03
389 396 0.899717 TTGATGTTTGGGCCAGGCTC 60.900 55.000 12.43 8.27 0.00 4.70
390 397 0.901580 CTTGATGTTTGGGCCAGGCT 60.902 55.000 12.43 0.00 0.00 4.58
391 398 1.593265 CTTGATGTTTGGGCCAGGC 59.407 57.895 6.23 1.26 0.00 4.85
392 399 1.593265 GCTTGATGTTTGGGCCAGG 59.407 57.895 6.23 0.00 0.00 4.45
393 400 1.593265 GGCTTGATGTTTGGGCCAG 59.407 57.895 6.23 0.00 42.08 4.85
394 401 1.912763 GGGCTTGATGTTTGGGCCA 60.913 57.895 0.00 0.00 44.04 5.36
395 402 2.981302 GGGCTTGATGTTTGGGCC 59.019 61.111 0.00 0.00 41.80 5.80
396 403 1.976474 TCGGGCTTGATGTTTGGGC 60.976 57.895 0.00 0.00 0.00 5.36
397 404 1.595093 GGTCGGGCTTGATGTTTGGG 61.595 60.000 0.00 0.00 0.00 4.12
398 405 1.595093 GGGTCGGGCTTGATGTTTGG 61.595 60.000 0.00 0.00 0.00 3.28
399 406 1.883021 GGGTCGGGCTTGATGTTTG 59.117 57.895 0.00 0.00 0.00 2.93
400 407 1.674322 CGGGTCGGGCTTGATGTTT 60.674 57.895 0.00 0.00 0.00 2.83
401 408 2.046314 CGGGTCGGGCTTGATGTT 60.046 61.111 0.00 0.00 0.00 2.71
402 409 4.096003 CCGGGTCGGGCTTGATGT 62.096 66.667 0.00 0.00 44.15 3.06
421 428 3.370231 CCGAAAAACCCAGGCCGG 61.370 66.667 0.00 0.00 0.00 6.13
422 429 3.370231 CCCGAAAAACCCAGGCCG 61.370 66.667 0.00 0.00 0.00 6.13
423 430 3.691342 GCCCGAAAAACCCAGGCC 61.691 66.667 0.00 0.00 37.66 5.19
424 431 3.691342 GGCCCGAAAAACCCAGGC 61.691 66.667 0.00 0.00 43.09 4.85
425 432 3.370231 CGGCCCGAAAAACCCAGG 61.370 66.667 0.00 0.00 0.00 4.45
426 433 2.281900 TCGGCCCGAAAAACCCAG 60.282 61.111 1.70 0.00 31.06 4.45
427 434 2.281900 CTCGGCCCGAAAAACCCA 60.282 61.111 7.50 0.00 34.74 4.51
428 435 3.744719 GCTCGGCCCGAAAAACCC 61.745 66.667 7.50 0.00 34.74 4.11
429 436 2.671963 AGCTCGGCCCGAAAAACC 60.672 61.111 7.50 0.00 34.74 3.27
430 437 2.183858 GACAGCTCGGCCCGAAAAAC 62.184 60.000 7.50 0.00 34.74 2.43
431 438 1.964373 GACAGCTCGGCCCGAAAAA 60.964 57.895 7.50 0.00 34.74 1.94
432 439 2.358247 GACAGCTCGGCCCGAAAA 60.358 61.111 7.50 0.00 34.74 2.29
433 440 4.388499 GGACAGCTCGGCCCGAAA 62.388 66.667 7.50 0.00 34.74 3.46
442 449 4.864334 CCCGGGCATGGACAGCTC 62.864 72.222 8.08 0.00 0.00 4.09
444 451 2.830186 TAAACCCGGGCATGGACAGC 62.830 60.000 24.08 0.00 0.00 4.40
445 452 0.748005 CTAAACCCGGGCATGGACAG 60.748 60.000 24.08 4.30 0.00 3.51
446 453 1.301623 CTAAACCCGGGCATGGACA 59.698 57.895 24.08 0.00 0.00 4.02
447 454 0.323087 AACTAAACCCGGGCATGGAC 60.323 55.000 24.08 0.00 0.00 4.02
448 455 0.322997 CAACTAAACCCGGGCATGGA 60.323 55.000 24.08 0.00 0.00 3.41
449 456 0.610785 ACAACTAAACCCGGGCATGG 60.611 55.000 24.08 14.58 0.00 3.66
450 457 1.741145 GTACAACTAAACCCGGGCATG 59.259 52.381 24.08 13.08 0.00 4.06
451 458 1.676615 CGTACAACTAAACCCGGGCAT 60.677 52.381 24.08 12.83 0.00 4.40
452 459 0.320596 CGTACAACTAAACCCGGGCA 60.321 55.000 24.08 4.89 0.00 5.36
453 460 0.320683 ACGTACAACTAAACCCGGGC 60.321 55.000 24.08 0.00 0.00 6.13
454 461 3.189285 CATACGTACAACTAAACCCGGG 58.811 50.000 22.25 22.25 0.00 5.73
455 462 3.189285 CCATACGTACAACTAAACCCGG 58.811 50.000 0.00 0.00 0.00 5.73
456 463 2.604462 GCCATACGTACAACTAAACCCG 59.396 50.000 0.00 0.00 0.00 5.28
457 464 2.604462 CGCCATACGTACAACTAAACCC 59.396 50.000 0.00 0.00 36.87 4.11
458 465 2.029606 GCGCCATACGTACAACTAAACC 59.970 50.000 0.00 0.00 46.11 3.27
459 466 2.925563 AGCGCCATACGTACAACTAAAC 59.074 45.455 2.29 0.00 46.11 2.01
460 467 3.181397 GAGCGCCATACGTACAACTAAA 58.819 45.455 2.29 0.00 46.11 1.85
461 468 2.164017 TGAGCGCCATACGTACAACTAA 59.836 45.455 2.29 0.00 46.11 2.24
462 469 1.744522 TGAGCGCCATACGTACAACTA 59.255 47.619 2.29 0.00 46.11 2.24
463 470 0.528924 TGAGCGCCATACGTACAACT 59.471 50.000 2.29 0.00 46.11 3.16
464 471 0.643820 GTGAGCGCCATACGTACAAC 59.356 55.000 2.29 0.00 46.11 3.32
486 493 1.228657 GGGAGCAAGACGACAACACC 61.229 60.000 0.00 0.00 0.00 4.16
525 532 3.861846 ACTGTCTGCCCATATCTATCCA 58.138 45.455 0.00 0.00 0.00 3.41
526 533 4.040952 ACAACTGTCTGCCCATATCTATCC 59.959 45.833 0.00 0.00 0.00 2.59
543 561 3.208383 TGCCGTGCCACACAACTG 61.208 61.111 0.00 0.00 33.40 3.16
576 604 0.751643 GTGGAGTGCACCCAACAAGT 60.752 55.000 23.40 0.00 35.12 3.16
614 648 8.091449 GTCCAGATCCAGATAAAATAGTCGATT 58.909 37.037 0.00 0.00 0.00 3.34
628 662 2.187958 ACCAATTCGTCCAGATCCAGA 58.812 47.619 0.00 0.00 0.00 3.86
635 669 2.504367 AGGTCAAACCAATTCGTCCAG 58.496 47.619 0.00 0.00 41.95 3.86
637 671 3.146847 AGAAGGTCAAACCAATTCGTCC 58.853 45.455 0.00 0.00 41.95 4.79
646 693 4.720046 AGGAAGAAGAAGAAGGTCAAACC 58.280 43.478 0.00 0.00 38.99 3.27
704 755 3.315544 GGAGCTCCCCTTCTTCTCT 57.684 57.895 23.19 0.00 0.00 3.10
737 807 0.738975 TTGAGCTACAGATCCGGACG 59.261 55.000 6.12 0.00 0.00 4.79
750 820 1.213926 GTGGAGGGATTGGATTGAGCT 59.786 52.381 0.00 0.00 0.00 4.09
752 822 1.210478 ACGTGGAGGGATTGGATTGAG 59.790 52.381 0.00 0.00 0.00 3.02
753 823 1.209504 GACGTGGAGGGATTGGATTGA 59.790 52.381 0.00 0.00 0.00 2.57
754 824 1.065491 TGACGTGGAGGGATTGGATTG 60.065 52.381 0.00 0.00 0.00 2.67
755 825 1.285280 TGACGTGGAGGGATTGGATT 58.715 50.000 0.00 0.00 0.00 3.01
756 826 1.417890 GATGACGTGGAGGGATTGGAT 59.582 52.381 0.00 0.00 0.00 3.41
757 827 0.830648 GATGACGTGGAGGGATTGGA 59.169 55.000 0.00 0.00 0.00 3.53
758 828 0.179045 GGATGACGTGGAGGGATTGG 60.179 60.000 0.00 0.00 0.00 3.16
760 830 0.833287 CTGGATGACGTGGAGGGATT 59.167 55.000 0.00 0.00 0.00 3.01
761 831 1.690219 GCTGGATGACGTGGAGGGAT 61.690 60.000 0.00 0.00 0.00 3.85
762 832 2.359169 GCTGGATGACGTGGAGGGA 61.359 63.158 0.00 0.00 0.00 4.20
763 833 2.187946 GCTGGATGACGTGGAGGG 59.812 66.667 0.00 0.00 0.00 4.30
765 835 2.187946 GGGCTGGATGACGTGGAG 59.812 66.667 0.00 0.00 0.00 3.86
766 836 3.399181 GGGGCTGGATGACGTGGA 61.399 66.667 0.00 0.00 0.00 4.02
773 850 1.407656 TAACTAGGCGGGGCTGGATG 61.408 60.000 12.42 0.00 0.00 3.51
782 859 1.134521 TGCTGGATTGTAACTAGGCGG 60.135 52.381 0.00 0.00 0.00 6.13
813 890 3.247648 ACTGCTACTAATTAATTGGCGCG 59.752 43.478 11.05 0.00 0.00 6.86
815 892 4.506654 ACGACTGCTACTAATTAATTGGCG 59.493 41.667 11.05 8.34 0.00 5.69
818 895 7.567771 GCTGCTACGACTGCTACTAATTAATTG 60.568 40.741 11.05 3.88 0.00 2.32
826 903 1.022735 GGCTGCTACGACTGCTACTA 58.977 55.000 0.00 0.00 35.11 1.82
829 906 1.511305 GTGGCTGCTACGACTGCTA 59.489 57.895 0.00 0.00 35.11 3.49
836 914 1.299468 GGAGATCGTGGCTGCTACG 60.299 63.158 29.10 29.10 42.56 3.51
904 986 3.267860 CGCGAAGAGGGCATGAGC 61.268 66.667 0.00 0.00 41.10 4.26
929 1011 3.618594 TCAGATTAAGCGCTTGCACTAAG 59.381 43.478 32.23 15.21 42.66 2.18
930 1012 3.370978 GTCAGATTAAGCGCTTGCACTAA 59.629 43.478 32.23 18.31 42.66 2.24
943 1025 1.870458 CGTCGCGGCGTCAGATTAA 60.870 57.895 27.25 0.00 0.00 1.40
968 1054 0.028242 CCGGTCAAGACTCTCGATCG 59.972 60.000 9.36 9.36 33.11 3.69
1134 1228 3.112709 GACTCCAGCACGAACGCC 61.113 66.667 0.00 0.00 0.00 5.68
1136 1239 1.284982 CTTGGACTCCAGCACGAACG 61.285 60.000 0.00 0.00 33.81 3.95
1393 1496 2.264005 ATGTACAAACACGGAAGGCA 57.736 45.000 0.00 0.00 38.78 4.75
1394 1497 3.332034 AGTATGTACAAACACGGAAGGC 58.668 45.455 0.00 0.00 38.78 4.35
1396 1499 9.325150 CAATTAAAGTATGTACAAACACGGAAG 57.675 33.333 0.00 0.00 38.78 3.46
1399 1502 8.500773 AGACAATTAAAGTATGTACAAACACGG 58.499 33.333 0.00 0.00 38.78 4.94
1403 1506 9.329913 CAGCAGACAATTAAAGTATGTACAAAC 57.670 33.333 0.00 0.00 31.22 2.93
1404 1507 8.511321 CCAGCAGACAATTAAAGTATGTACAAA 58.489 33.333 0.00 0.00 31.22 2.83
1407 1510 7.464358 CACCAGCAGACAATTAAAGTATGTAC 58.536 38.462 7.56 0.00 31.22 2.90
1408 1511 6.093495 GCACCAGCAGACAATTAAAGTATGTA 59.907 38.462 7.56 0.00 41.58 2.29
1409 1512 5.106157 GCACCAGCAGACAATTAAAGTATGT 60.106 40.000 7.56 0.00 41.58 2.29
1410 1513 5.124457 AGCACCAGCAGACAATTAAAGTATG 59.876 40.000 2.68 2.68 45.49 2.39
1412 1515 4.651778 AGCACCAGCAGACAATTAAAGTA 58.348 39.130 0.00 0.00 45.49 2.24
1413 1516 3.490348 AGCACCAGCAGACAATTAAAGT 58.510 40.909 0.00 0.00 45.49 2.66
1414 1517 4.479619 GAAGCACCAGCAGACAATTAAAG 58.520 43.478 0.00 0.00 45.49 1.85
1415 1518 3.058293 CGAAGCACCAGCAGACAATTAAA 60.058 43.478 0.00 0.00 45.49 1.52
1416 1519 2.483877 CGAAGCACCAGCAGACAATTAA 59.516 45.455 0.00 0.00 45.49 1.40
1417 1520 2.076100 CGAAGCACCAGCAGACAATTA 58.924 47.619 0.00 0.00 45.49 1.40
1418 1521 0.877071 CGAAGCACCAGCAGACAATT 59.123 50.000 0.00 0.00 45.49 2.32
1419 1522 0.035317 TCGAAGCACCAGCAGACAAT 59.965 50.000 0.00 0.00 45.49 2.71
1420 1523 0.880278 GTCGAAGCACCAGCAGACAA 60.880 55.000 0.00 0.00 45.49 3.18
1421 1524 1.300931 GTCGAAGCACCAGCAGACA 60.301 57.895 0.00 0.00 45.49 3.41
1422 1525 1.005630 AGTCGAAGCACCAGCAGAC 60.006 57.895 0.00 0.00 45.49 3.51
1423 1526 1.005748 CAGTCGAAGCACCAGCAGA 60.006 57.895 0.00 0.00 45.49 4.26
1424 1527 2.675056 GCAGTCGAAGCACCAGCAG 61.675 63.158 6.26 0.00 45.49 4.24
1426 1529 3.426568 GGCAGTCGAAGCACCAGC 61.427 66.667 12.48 0.00 42.56 4.85
1427 1530 3.114616 CGGCAGTCGAAGCACCAG 61.115 66.667 12.48 0.00 42.43 4.00
1433 1536 1.003545 CATTAATGGCGGCAGTCGAAG 60.004 52.381 17.40 0.61 42.43 3.79
1434 1537 1.013596 CATTAATGGCGGCAGTCGAA 58.986 50.000 17.40 6.08 42.43 3.71
1435 1538 0.107897 ACATTAATGGCGGCAGTCGA 60.108 50.000 17.40 6.53 42.43 4.20
1440 1543 1.756430 TTAGCACATTAATGGCGGCA 58.244 45.000 16.34 16.34 0.00 5.69
1441 1544 4.497473 TTATTAGCACATTAATGGCGGC 57.503 40.909 19.37 17.77 0.00 6.53
1442 1545 7.639850 CGATTATTATTAGCACATTAATGGCGG 59.360 37.037 19.37 9.54 0.00 6.13
1443 1546 8.175069 ACGATTATTATTAGCACATTAATGGCG 58.825 33.333 19.37 10.96 0.00 5.69
1454 1557 4.359434 TGGCCCACGATTATTATTAGCA 57.641 40.909 0.00 0.00 0.00 3.49
1456 1559 9.661563 TTATACTTGGCCCACGATTATTATTAG 57.338 33.333 0.00 0.00 0.00 1.73
1458 1561 8.956426 CATTATACTTGGCCCACGATTATTATT 58.044 33.333 0.00 0.00 0.00 1.40
1459 1562 8.325787 TCATTATACTTGGCCCACGATTATTAT 58.674 33.333 0.00 0.00 0.00 1.28
1472 1575 0.512952 CGCCGCTCATTATACTTGGC 59.487 55.000 0.00 0.00 37.66 4.52
1485 1588 2.753966 GCACATCATTCACGCCGCT 61.754 57.895 0.00 0.00 0.00 5.52
1642 1746 9.874205 TGAATAGAATTTTGTGGAAATCAATCC 57.126 29.630 0.00 0.00 36.96 3.01
1645 1749 8.587608 AGCTGAATAGAATTTTGTGGAAATCAA 58.412 29.630 0.00 0.00 36.96 2.57
1646 1750 8.030692 CAGCTGAATAGAATTTTGTGGAAATCA 58.969 33.333 8.42 0.00 36.96 2.57
1650 1754 6.899393 ACAGCTGAATAGAATTTTGTGGAA 57.101 33.333 23.35 0.00 0.00 3.53
1652 1756 6.749118 GCTAACAGCTGAATAGAATTTTGTGG 59.251 38.462 23.35 0.00 38.45 4.17
1653 1757 6.467047 CGCTAACAGCTGAATAGAATTTTGTG 59.533 38.462 23.35 5.45 39.60 3.33
1655 1759 6.546395 ACGCTAACAGCTGAATAGAATTTTG 58.454 36.000 23.35 3.66 39.60 2.44
1656 1760 6.455646 CGACGCTAACAGCTGAATAGAATTTT 60.456 38.462 23.35 2.95 39.60 1.82
1657 1761 5.005779 CGACGCTAACAGCTGAATAGAATTT 59.994 40.000 23.35 3.76 39.60 1.82
1658 1762 4.504461 CGACGCTAACAGCTGAATAGAATT 59.496 41.667 23.35 4.57 39.60 2.17
1660 1764 3.435566 CGACGCTAACAGCTGAATAGAA 58.564 45.455 23.35 0.00 39.60 2.10
1661 1765 2.794981 GCGACGCTAACAGCTGAATAGA 60.795 50.000 23.35 0.00 39.60 1.98
1662 1766 1.518929 GCGACGCTAACAGCTGAATAG 59.481 52.381 23.35 21.24 39.60 1.73
1663 1767 1.135228 TGCGACGCTAACAGCTGAATA 60.135 47.619 23.35 11.99 39.60 1.75
1664 1768 0.389817 TGCGACGCTAACAGCTGAAT 60.390 50.000 23.35 11.42 39.60 2.57
1665 1769 1.006688 TGCGACGCTAACAGCTGAA 60.007 52.632 23.35 7.06 39.60 3.02
1668 1772 2.543687 ATCGTGCGACGCTAACAGCT 62.544 55.000 22.08 0.00 42.21 4.24
1669 1773 1.683790 AATCGTGCGACGCTAACAGC 61.684 55.000 22.08 3.54 42.21 4.40
1670 1774 0.023732 CAATCGTGCGACGCTAACAG 59.976 55.000 22.08 8.32 42.21 3.16
1671 1775 1.348538 CCAATCGTGCGACGCTAACA 61.349 55.000 22.08 2.53 42.21 2.41
1672 1776 1.343821 CCAATCGTGCGACGCTAAC 59.656 57.895 22.08 10.83 42.21 2.34
1673 1777 1.080366 ACCAATCGTGCGACGCTAA 60.080 52.632 22.08 6.61 42.21 3.09
1675 1779 3.112075 CACCAATCGTGCGACGCT 61.112 61.111 22.08 0.00 42.21 5.07
1676 1780 4.147322 CCACCAATCGTGCGACGC 62.147 66.667 14.19 14.19 42.21 5.19
1677 1781 4.147322 GCCACCAATCGTGCGACG 62.147 66.667 0.00 2.79 44.19 5.12
1678 1782 3.799755 GGCCACCAATCGTGCGAC 61.800 66.667 0.00 0.00 41.53 5.19
1679 1783 4.015406 AGGCCACCAATCGTGCGA 62.015 61.111 5.01 0.00 41.53 5.10
1680 1784 3.803082 CAGGCCACCAATCGTGCG 61.803 66.667 5.01 0.00 41.53 5.34
1681 1785 1.750399 ATCAGGCCACCAATCGTGC 60.750 57.895 5.01 0.00 41.53 5.34
1682 1786 0.392863 TCATCAGGCCACCAATCGTG 60.393 55.000 5.01 0.00 42.62 4.35
1683 1787 0.548031 ATCATCAGGCCACCAATCGT 59.452 50.000 5.01 0.00 0.00 3.73
1684 1788 1.202734 AGATCATCAGGCCACCAATCG 60.203 52.381 5.01 0.00 0.00 3.34
1685 1789 2.502295 GAGATCATCAGGCCACCAATC 58.498 52.381 5.01 0.98 0.00 2.67
1687 1791 0.548031 GGAGATCATCAGGCCACCAA 59.452 55.000 5.01 0.00 0.00 3.67
1688 1792 1.348008 GGGAGATCATCAGGCCACCA 61.348 60.000 5.01 0.00 0.00 4.17
1689 1793 1.348008 TGGGAGATCATCAGGCCACC 61.348 60.000 5.01 0.00 0.00 4.61
1690 1794 0.108207 CTGGGAGATCATCAGGCCAC 59.892 60.000 5.01 0.00 0.00 5.01
1691 1795 1.058428 CCTGGGAGATCATCAGGCCA 61.058 60.000 5.01 0.00 41.12 5.36
1692 1796 1.759881 CCTGGGAGATCATCAGGCC 59.240 63.158 13.54 0.00 41.12 5.19
1695 1799 5.121811 CAGTAAAACCTGGGAGATCATCAG 58.878 45.833 0.00 0.00 0.00 2.90
1696 1800 4.536090 ACAGTAAAACCTGGGAGATCATCA 59.464 41.667 0.00 0.00 36.75 3.07
1697 1801 5.104259 ACAGTAAAACCTGGGAGATCATC 57.896 43.478 0.00 0.00 36.75 2.92
1700 1804 7.829706 AGATTTTACAGTAAAACCTGGGAGATC 59.170 37.037 18.78 10.27 40.12 2.75
1701 1805 7.699878 AGATTTTACAGTAAAACCTGGGAGAT 58.300 34.615 18.78 2.18 40.12 2.75
1702 1806 7.017254 AGAGATTTTACAGTAAAACCTGGGAGA 59.983 37.037 17.58 0.00 40.12 3.71
1703 1807 7.119846 CAGAGATTTTACAGTAAAACCTGGGAG 59.880 40.741 17.58 2.96 40.12 4.30
1704 1808 6.940298 CAGAGATTTTACAGTAAAACCTGGGA 59.060 38.462 17.58 0.00 40.12 4.37
1705 1809 6.151144 CCAGAGATTTTACAGTAAAACCTGGG 59.849 42.308 30.05 22.06 42.14 4.45
1706 1810 6.715264 ACCAGAGATTTTACAGTAAAACCTGG 59.285 38.462 32.46 32.46 45.76 4.45
1707 1811 7.745620 ACCAGAGATTTTACAGTAAAACCTG 57.254 36.000 17.58 21.21 40.12 4.00
1708 1812 8.877195 TCTACCAGAGATTTTACAGTAAAACCT 58.123 33.333 18.78 15.48 40.12 3.50
1709 1813 8.933807 GTCTACCAGAGATTTTACAGTAAAACC 58.066 37.037 18.78 10.95 40.12 3.27
1716 1820 5.103000 CACCGTCTACCAGAGATTTTACAG 58.897 45.833 0.00 0.00 36.29 2.74
1727 1831 3.259064 CAATGGTTACACCGTCTACCAG 58.741 50.000 0.00 0.00 43.37 4.00
1733 1837 3.135994 ACTTCACAATGGTTACACCGTC 58.864 45.455 0.00 0.00 42.58 4.79
1734 1838 3.135994 GACTTCACAATGGTTACACCGT 58.864 45.455 0.00 0.00 42.58 4.83
1735 1839 2.482721 GGACTTCACAATGGTTACACCG 59.517 50.000 0.00 0.00 42.58 4.94
1736 1840 3.482436 TGGACTTCACAATGGTTACACC 58.518 45.455 0.00 0.00 39.22 4.16
1745 1849 9.691362 GTTTACATTAACATTGGACTTCACAAT 57.309 29.630 0.00 0.00 39.00 2.71
1746 1850 8.138712 GGTTTACATTAACATTGGACTTCACAA 58.861 33.333 0.00 0.00 0.00 3.33
1748 1852 7.653647 TGGTTTACATTAACATTGGACTTCAC 58.346 34.615 0.00 0.00 0.00 3.18
1749 1853 7.721842 TCTGGTTTACATTAACATTGGACTTCA 59.278 33.333 0.00 0.00 0.00 3.02
1750 1854 8.106247 TCTGGTTTACATTAACATTGGACTTC 57.894 34.615 0.00 0.00 0.00 3.01
1751 1855 8.472007 TTCTGGTTTACATTAACATTGGACTT 57.528 30.769 0.00 0.00 0.00 3.01
1752 1856 8.357402 GTTTCTGGTTTACATTAACATTGGACT 58.643 33.333 0.00 0.00 0.00 3.85
1753 1857 8.138712 TGTTTCTGGTTTACATTAACATTGGAC 58.861 33.333 0.00 0.00 31.43 4.02
1754 1858 8.239038 TGTTTCTGGTTTACATTAACATTGGA 57.761 30.769 0.00 0.00 31.43 3.53
1755 1859 9.487790 AATGTTTCTGGTTTACATTAACATTGG 57.512 29.630 0.00 0.00 43.59 3.16
1757 1861 8.987890 GCAATGTTTCTGGTTTACATTAACATT 58.012 29.630 0.00 0.00 44.71 2.71
1758 1862 8.147058 TGCAATGTTTCTGGTTTACATTAACAT 58.853 29.630 0.00 0.00 41.13 2.71
1759 1863 7.492524 TGCAATGTTTCTGGTTTACATTAACA 58.507 30.769 0.00 0.00 39.70 2.41
1760 1864 7.938563 TGCAATGTTTCTGGTTTACATTAAC 57.061 32.000 0.00 0.00 39.70 2.01
1761 1865 7.981789 TGTTGCAATGTTTCTGGTTTACATTAA 59.018 29.630 0.59 0.00 39.70 1.40
1762 1866 7.492524 TGTTGCAATGTTTCTGGTTTACATTA 58.507 30.769 0.59 0.00 39.70 1.90
1763 1867 6.344500 TGTTGCAATGTTTCTGGTTTACATT 58.656 32.000 0.59 0.00 41.73 2.71
1764 1868 5.911752 TGTTGCAATGTTTCTGGTTTACAT 58.088 33.333 0.59 0.00 34.14 2.29
1765 1869 5.330455 TGTTGCAATGTTTCTGGTTTACA 57.670 34.783 0.59 0.00 0.00 2.41
1766 1870 6.920758 TGTATGTTGCAATGTTTCTGGTTTAC 59.079 34.615 0.59 0.00 0.00 2.01
1767 1871 7.043961 TGTATGTTGCAATGTTTCTGGTTTA 57.956 32.000 0.59 0.00 0.00 2.01
1768 1872 5.911752 TGTATGTTGCAATGTTTCTGGTTT 58.088 33.333 0.59 0.00 0.00 3.27
1769 1873 5.068987 ACTGTATGTTGCAATGTTTCTGGTT 59.931 36.000 0.59 0.00 0.00 3.67
1770 1874 4.584325 ACTGTATGTTGCAATGTTTCTGGT 59.416 37.500 0.59 0.00 0.00 4.00
1771 1875 5.125100 ACTGTATGTTGCAATGTTTCTGG 57.875 39.130 0.59 0.00 0.00 3.86
1781 1885 8.729756 GCCATCATTTATATACTGTATGTTGCA 58.270 33.333 10.51 0.00 0.00 4.08
1782 1886 8.729756 TGCCATCATTTATATACTGTATGTTGC 58.270 33.333 10.51 1.79 0.00 4.17
1784 1888 9.791801 TGTGCCATCATTTATATACTGTATGTT 57.208 29.630 10.51 1.12 0.00 2.71
1785 1889 9.791801 TTGTGCCATCATTTATATACTGTATGT 57.208 29.630 10.51 6.44 0.00 2.29
1794 1898 9.453572 ACGATCTATTTGTGCCATCATTTATAT 57.546 29.630 0.00 0.00 0.00 0.86
1795 1899 8.720562 CACGATCTATTTGTGCCATCATTTATA 58.279 33.333 0.00 0.00 32.98 0.98
1796 1900 7.229306 ACACGATCTATTTGTGCCATCATTTAT 59.771 33.333 0.00 0.00 42.69 1.40
1797 1901 6.542005 ACACGATCTATTTGTGCCATCATTTA 59.458 34.615 0.00 0.00 42.69 1.40
1798 1902 5.357878 ACACGATCTATTTGTGCCATCATTT 59.642 36.000 0.00 0.00 42.69 2.32
1799 1903 4.883585 ACACGATCTATTTGTGCCATCATT 59.116 37.500 0.00 0.00 42.69 2.57
1800 1904 4.454678 ACACGATCTATTTGTGCCATCAT 58.545 39.130 0.00 0.00 42.69 2.45
1801 1905 3.871006 GACACGATCTATTTGTGCCATCA 59.129 43.478 0.00 0.00 42.69 3.07
1802 1906 3.871006 TGACACGATCTATTTGTGCCATC 59.129 43.478 0.00 0.00 42.69 3.51
1803 1907 3.872696 TGACACGATCTATTTGTGCCAT 58.127 40.909 0.00 0.00 42.69 4.40
1804 1908 3.056179 TCTGACACGATCTATTTGTGCCA 60.056 43.478 0.00 0.00 42.69 4.92
1805 1909 3.521560 TCTGACACGATCTATTTGTGCC 58.478 45.455 0.00 0.00 42.69 5.01
1806 1910 5.120830 AGTTTCTGACACGATCTATTTGTGC 59.879 40.000 0.00 0.00 42.69 4.57
1807 1911 6.366061 TCAGTTTCTGACACGATCTATTTGTG 59.634 38.462 0.00 0.00 44.24 3.33
1808 1912 6.455647 TCAGTTTCTGACACGATCTATTTGT 58.544 36.000 0.00 0.00 35.39 2.83
1809 1913 6.951256 TCAGTTTCTGACACGATCTATTTG 57.049 37.500 0.00 0.00 35.39 2.32
1810 1914 7.441157 TGTTTCAGTTTCTGACACGATCTATTT 59.559 33.333 10.16 0.00 42.14 1.40
1811 1915 6.929049 TGTTTCAGTTTCTGACACGATCTATT 59.071 34.615 10.16 0.00 42.14 1.73
1812 1916 6.455647 TGTTTCAGTTTCTGACACGATCTAT 58.544 36.000 10.16 0.00 42.14 1.98
1813 1917 5.838529 TGTTTCAGTTTCTGACACGATCTA 58.161 37.500 10.16 0.00 42.14 1.98
1814 1918 4.693283 TGTTTCAGTTTCTGACACGATCT 58.307 39.130 10.16 0.00 42.14 2.75
1815 1919 5.403897 TTGTTTCAGTTTCTGACACGATC 57.596 39.130 10.16 0.00 42.14 3.69
1816 1920 5.811399 TTTGTTTCAGTTTCTGACACGAT 57.189 34.783 10.16 0.00 42.14 3.73
1817 1921 5.614923 TTTTGTTTCAGTTTCTGACACGA 57.385 34.783 10.16 6.70 42.14 4.35
1818 1922 5.799936 ACATTTTGTTTCAGTTTCTGACACG 59.200 36.000 10.16 0.00 42.14 4.49
1819 1923 7.581011 AACATTTTGTTTCAGTTTCTGACAC 57.419 32.000 8.52 8.52 40.46 3.67
1820 1924 9.134734 GTAAACATTTTGTTTCAGTTTCTGACA 57.865 29.630 8.76 0.00 46.61 3.58
1821 1925 8.592155 GGTAAACATTTTGTTTCAGTTTCTGAC 58.408 33.333 8.76 0.01 46.61 3.51
1822 1926 8.527810 AGGTAAACATTTTGTTTCAGTTTCTGA 58.472 29.630 8.76 0.00 46.61 3.27
1823 1927 8.702163 AGGTAAACATTTTGTTTCAGTTTCTG 57.298 30.769 8.76 0.00 46.61 3.02
1828 1932 9.581099 CAGTTAAGGTAAACATTTTGTTTCAGT 57.419 29.630 8.76 0.00 46.61 3.41
1829 1933 9.581099 ACAGTTAAGGTAAACATTTTGTTTCAG 57.419 29.630 8.76 0.00 46.61 3.02
1830 1934 9.360093 CACAGTTAAGGTAAACATTTTGTTTCA 57.640 29.630 8.76 0.00 46.61 2.69
1831 1935 8.325282 GCACAGTTAAGGTAAACATTTTGTTTC 58.675 33.333 8.76 2.54 46.61 2.78
1833 1937 7.276878 GTGCACAGTTAAGGTAAACATTTTGTT 59.723 33.333 13.17 0.00 43.41 2.83
1834 1938 6.754675 GTGCACAGTTAAGGTAAACATTTTGT 59.245 34.615 13.17 0.00 0.00 2.83
1835 1939 6.200097 GGTGCACAGTTAAGGTAAACATTTTG 59.800 38.462 20.43 0.00 0.00 2.44
1836 1940 6.097696 AGGTGCACAGTTAAGGTAAACATTTT 59.902 34.615 20.43 0.00 0.00 1.82
1837 1941 5.596772 AGGTGCACAGTTAAGGTAAACATTT 59.403 36.000 20.43 0.00 0.00 2.32
1838 1942 5.137551 AGGTGCACAGTTAAGGTAAACATT 58.862 37.500 20.43 0.00 0.00 2.71
1839 1943 4.725490 AGGTGCACAGTTAAGGTAAACAT 58.275 39.130 20.43 0.00 0.00 2.71
1840 1944 4.131596 GAGGTGCACAGTTAAGGTAAACA 58.868 43.478 20.43 0.00 0.00 2.83
1841 1945 4.213482 CAGAGGTGCACAGTTAAGGTAAAC 59.787 45.833 20.43 0.00 0.00 2.01
1842 1946 4.385825 CAGAGGTGCACAGTTAAGGTAAA 58.614 43.478 20.43 0.00 0.00 2.01
1843 1947 4.002906 CAGAGGTGCACAGTTAAGGTAA 57.997 45.455 20.43 0.00 0.00 2.85
1844 1948 3.678056 CAGAGGTGCACAGTTAAGGTA 57.322 47.619 20.43 0.00 0.00 3.08
1845 1949 2.550830 CAGAGGTGCACAGTTAAGGT 57.449 50.000 20.43 0.00 0.00 3.50
1857 1961 6.985188 TTACTTTATTAGCAAGCAGAGGTG 57.015 37.500 0.00 0.00 0.00 4.00
1858 1962 7.611855 ACATTTACTTTATTAGCAAGCAGAGGT 59.388 33.333 0.00 0.00 0.00 3.85
1859 1963 7.989826 ACATTTACTTTATTAGCAAGCAGAGG 58.010 34.615 0.00 0.00 0.00 3.69
1860 1964 9.495754 GAACATTTACTTTATTAGCAAGCAGAG 57.504 33.333 0.00 0.00 0.00 3.35
1861 1965 9.008965 TGAACATTTACTTTATTAGCAAGCAGA 57.991 29.630 0.00 0.00 0.00 4.26
1862 1966 9.624697 TTGAACATTTACTTTATTAGCAAGCAG 57.375 29.630 0.00 0.00 0.00 4.24
1895 1999 6.926280 TTATTAGTTGTGCAATGCTTTTCG 57.074 33.333 6.82 0.00 0.00 3.46
1896 2000 7.331687 ACCATTATTAGTTGTGCAATGCTTTTC 59.668 33.333 6.82 0.00 0.00 2.29
1923 2027 3.885724 TTGACACGATCTATTCCTGCA 57.114 42.857 0.00 0.00 0.00 4.41
2010 2114 2.710096 ACGTATAGCCAAGGTGCAAT 57.290 45.000 0.00 0.00 0.00 3.56
2030 2134 1.070914 TCTGCACCCGTTGACATGTAA 59.929 47.619 0.00 0.00 0.00 2.41
2036 2140 2.356135 ACATAATCTGCACCCGTTGAC 58.644 47.619 0.00 0.00 0.00 3.18
2127 2231 2.236382 CGGCATCTGCGAGAAGAGC 61.236 63.158 0.00 0.00 43.26 4.09
2212 2316 2.280797 AATGCACGCGCCCGATAT 60.281 55.556 5.73 0.00 37.32 1.63
2284 2407 7.336427 CCTAGCTCTTTTTCATCTCAGAAACAT 59.664 37.037 0.00 0.00 37.24 2.71
2330 2472 8.329203 ACCTGTCAAAAATTCAGATCTAAGAC 57.671 34.615 0.00 0.00 0.00 3.01
2397 2539 2.474410 ACATCTTCCCGGACTTTGAC 57.526 50.000 0.73 0.00 0.00 3.18
2646 2788 2.997897 GTCGGTGCCAGAGAGGGT 60.998 66.667 0.00 0.00 38.09 4.34
3000 3142 1.408127 CCGGTGAACAAGGCCATGATA 60.408 52.381 16.33 0.00 0.00 2.15
3082 3224 2.158769 TGACATGGTCACTGAACAGCTT 60.159 45.455 2.61 0.00 37.67 3.74
3172 3314 3.243301 CGCGGCCTACTTTAGTTGAGATA 60.243 47.826 0.00 0.00 0.00 1.98
3173 3315 2.481449 CGCGGCCTACTTTAGTTGAGAT 60.481 50.000 0.00 0.00 0.00 2.75
3174 3316 1.135199 CGCGGCCTACTTTAGTTGAGA 60.135 52.381 0.00 0.00 0.00 3.27
3179 3321 2.202703 CGCGCGGCCTACTTTAGT 60.203 61.111 24.84 0.00 0.00 2.24
3180 3322 2.202703 ACGCGCGGCCTACTTTAG 60.203 61.111 35.22 1.22 0.00 1.85
3193 3335 1.518572 GTGGTAGATGGTCCACGCG 60.519 63.158 3.53 3.53 43.34 6.01
3194 3336 4.515404 GTGGTAGATGGTCCACGC 57.485 61.111 0.00 0.00 43.34 5.34
3198 3340 2.238646 TGGATTGTGTGGTAGATGGTCC 59.761 50.000 0.00 0.00 0.00 4.46
3200 3342 4.380843 TTTGGATTGTGTGGTAGATGGT 57.619 40.909 0.00 0.00 0.00 3.55
3206 3348 4.837972 TCGATGATTTGGATTGTGTGGTA 58.162 39.130 0.00 0.00 0.00 3.25
3216 3358 8.156820 ACAGAACCATATATTCGATGATTTGGA 58.843 33.333 17.71 0.00 30.99 3.53
3218 3360 8.777413 ACACAGAACCATATATTCGATGATTTG 58.223 33.333 0.00 0.00 0.00 2.32
3219 3361 8.908786 ACACAGAACCATATATTCGATGATTT 57.091 30.769 0.00 0.00 0.00 2.17
3220 3362 8.908786 AACACAGAACCATATATTCGATGATT 57.091 30.769 0.00 0.00 0.00 2.57
3221 3363 9.424319 GTAACACAGAACCATATATTCGATGAT 57.576 33.333 0.00 0.00 0.00 2.45
3255 3397 7.509141 TTTGTGTTGCTCAGAGAAATATTCA 57.491 32.000 0.00 0.00 0.00 2.57
3264 3406 4.889832 ACTCTTTTTGTGTTGCTCAGAG 57.110 40.909 0.00 0.00 0.00 3.35
3335 3478 9.958180 TTCTTGAGAGACCATGAATATTTACAA 57.042 29.630 0.00 0.00 0.00 2.41
3374 3517 4.156455 AGAACCATGTGAAGTGTTGTCT 57.844 40.909 0.00 0.00 0.00 3.41
3376 3519 6.959639 AAATAGAACCATGTGAAGTGTTGT 57.040 33.333 0.00 0.00 0.00 3.32
3408 3570 3.119245 CCTGATCAGGGATGCAACAAAAG 60.119 47.826 31.14 2.82 44.87 2.27
3430 3592 0.539051 ATGAGCCTGTGTAGCTGGAC 59.461 55.000 0.00 0.00 41.75 4.02
3444 3606 8.323140 CGATTATTCCATTGTTTTGAAATGAGC 58.677 33.333 0.00 0.00 37.22 4.26
3453 3615 7.164230 TGCTTACCGATTATTCCATTGTTTT 57.836 32.000 0.00 0.00 0.00 2.43
3469 3631 7.331687 TGTGATGTGATATTATGATGCTTACCG 59.668 37.037 0.00 0.00 0.00 4.02
3471 3633 9.817365 GTTGTGATGTGATATTATGATGCTTAC 57.183 33.333 0.00 0.00 0.00 2.34
3503 3668 2.079158 GGTCTTTTTGCCCCTACGTAC 58.921 52.381 0.00 0.00 0.00 3.67
3508 3673 2.817839 GCTGAAGGTCTTTTTGCCCCTA 60.818 50.000 0.00 0.00 0.00 3.53
3519 3684 2.574006 TCTGCAATTGCTGAAGGTCT 57.426 45.000 30.61 0.00 44.21 3.85
3525 3690 3.750652 TCGTTATTGTCTGCAATTGCTGA 59.249 39.130 29.51 29.51 42.19 4.26
3528 3693 3.820689 TGTCGTTATTGTCTGCAATTGC 58.179 40.909 23.69 23.69 42.19 3.56
3531 3696 5.585844 TCATCATGTCGTTATTGTCTGCAAT 59.414 36.000 0.00 0.00 46.14 3.56
3561 3733 4.424061 TCATGTGTTCTTTATGTGCAGC 57.576 40.909 0.00 0.00 0.00 5.25
3628 3801 6.203915 GGGACCAAAAATAATTTTCGCAAAGT 59.796 34.615 0.00 0.00 36.62 2.66
3629 3802 6.598525 GGGACCAAAAATAATTTTCGCAAAG 58.401 36.000 0.00 0.00 36.62 2.77
3634 3807 4.860352 GTCCGGGACCAAAAATAATTTTCG 59.140 41.667 16.55 0.00 36.62 3.46
3636 3809 5.540719 TGAGTCCGGGACCAAAAATAATTTT 59.459 36.000 23.21 0.00 39.30 1.82
3666 3839 3.064324 ACAAATCAGGGCGCCAGC 61.064 61.111 30.85 12.35 44.18 4.85
3667 3840 1.243342 TTCACAAATCAGGGCGCCAG 61.243 55.000 30.85 20.54 0.00 4.85
3671 3844 2.794350 GTGTTTTTCACAAATCAGGGCG 59.206 45.455 0.00 0.00 45.51 6.13
3726 3903 6.206829 GGTGTACATCACTAGGCTTTTCTTTT 59.793 38.462 0.00 0.00 45.50 2.27
3832 4010 5.482878 TGAAAGACGGAGGGAGTAGTAAATT 59.517 40.000 0.00 0.00 0.00 1.82
3879 4057 7.086685 ACTTTTAAGATAGTTTGACCCTCCA 57.913 36.000 0.00 0.00 0.00 3.86
3891 5064 8.557029 ACAAACTCGGTCAAACTTTTAAGATAG 58.443 33.333 0.00 0.00 0.00 2.08
3897 5070 4.396790 AGCACAAACTCGGTCAAACTTTTA 59.603 37.500 0.00 0.00 0.00 1.52
3902 5075 3.955771 TTAGCACAAACTCGGTCAAAC 57.044 42.857 0.00 0.00 0.00 2.93
3905 5078 7.766738 TGATATATTTTAGCACAAACTCGGTCA 59.233 33.333 0.00 0.00 0.00 4.02
3934 5107 9.950680 CATCATATACCTATTGGTTTCACAAAC 57.049 33.333 3.58 0.00 46.05 2.93
4049 5530 6.674066 TCAACTTTGTCGAAAAGTCAAACTT 58.326 32.000 19.17 5.74 40.80 2.66
4050 5531 6.249035 TCAACTTTGTCGAAAAGTCAAACT 57.751 33.333 19.17 7.11 39.36 2.66
4053 5534 6.674066 ACTTTCAACTTTGTCGAAAAGTCAA 58.326 32.000 19.17 14.33 39.36 3.18
4079 5560 4.015084 CTCCCTACGTCCTTGAAAGAGTA 58.985 47.826 0.00 0.00 0.00 2.59
4082 5563 2.885616 ACTCCCTACGTCCTTGAAAGA 58.114 47.619 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.