Multiple sequence alignment - TraesCS1D01G434200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G434200 chr1D 100.000 5783 0 0 1 5783 483512002 483517784 0.000000e+00 10680.0
1 TraesCS1D01G434200 chr1D 97.143 35 1 0 5713 5747 72907406 72907372 6.260000e-05 60.2
2 TraesCS1D01G434200 chr1B 92.455 4811 222 47 331 5047 673741030 673745793 0.000000e+00 6743.0
3 TraesCS1D01G434200 chr1B 90.551 381 22 9 5335 5706 673745946 673746321 5.210000e-135 492.0
4 TraesCS1D01G434200 chr1B 88.028 142 17 0 1 142 673740524 673740665 9.970000e-38 169.0
5 TraesCS1D01G434200 chr1B 94.737 38 2 0 5713 5750 112753781 112753818 6.260000e-05 60.2
6 TraesCS1D01G434200 chr1B 94.737 38 0 2 5714 5751 41646499 41646534 2.250000e-04 58.4
7 TraesCS1D01G434200 chr1A 91.234 4221 232 50 249 4389 580420110 580424272 0.000000e+00 5618.0
8 TraesCS1D01G434200 chr1A 88.419 639 54 9 4423 5047 580424266 580424898 0.000000e+00 752.0
9 TraesCS1D01G434200 chr1A 84.161 745 55 38 5087 5783 580424839 580425568 0.000000e+00 664.0
10 TraesCS1D01G434200 chr1A 89.381 113 11 1 1 112 580419757 580419869 2.170000e-29 141.0
11 TraesCS1D01G434200 chr3D 83.333 276 43 1 2749 3021 312889709 312889984 9.620000e-63 252.0
12 TraesCS1D01G434200 chr3D 100.000 33 0 0 5713 5745 591239033 591239065 1.740000e-05 62.1
13 TraesCS1D01G434200 chr3B 86.087 230 32 0 2792 3021 407187263 407187034 1.240000e-61 248.0
14 TraesCS1D01G434200 chr3B 92.500 40 2 1 5713 5752 250575990 250576028 8.100000e-04 56.5
15 TraesCS1D01G434200 chr3A 84.783 230 35 0 2792 3021 419540694 419540465 1.250000e-56 231.0
16 TraesCS1D01G434200 chr2D 100.000 36 0 0 5713 5748 380431660 380431695 3.740000e-07 67.6
17 TraesCS1D01G434200 chr4D 100.000 33 0 0 5713 5745 58583538 58583506 1.740000e-05 62.1
18 TraesCS1D01G434200 chr2A 90.698 43 3 1 5713 5754 200894547 200894505 8.100000e-04 56.5
19 TraesCS1D01G434200 chr2A 88.000 50 2 3 5713 5762 659614616 659614571 8.100000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G434200 chr1D 483512002 483517784 5782 False 10680.00 10680 100.000000 1 5783 1 chr1D.!!$F1 5782
1 TraesCS1D01G434200 chr1B 673740524 673746321 5797 False 2468.00 6743 90.344667 1 5706 3 chr1B.!!$F3 5705
2 TraesCS1D01G434200 chr1A 580419757 580425568 5811 False 1793.75 5618 88.298750 1 5783 4 chr1A.!!$F1 5782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 163 0.242825 GGCTTTCCTTTTACCGGCAC 59.757 55.000 0.00 0.0 0.00 5.01 F
1803 2295 0.166814 GCACATCACCGAAGCAGAAC 59.833 55.000 0.00 0.0 0.00 3.01 F
1805 2297 0.396435 ACATCACCGAAGCAGAACCA 59.604 50.000 0.00 0.0 0.00 3.67 F
1856 2354 1.322442 ACTTTGAAGCTCAAGGGTGC 58.678 50.000 10.94 0.0 37.72 5.01 F
1923 2421 1.429825 CGTGAGAAGCTCCGATCGT 59.570 57.895 15.09 0.0 0.00 3.73 F
2520 3018 1.633915 ATAGCAGGAGCAGCAGCCTT 61.634 55.000 4.16 0.0 45.49 4.35 F
2715 3213 1.645034 ATGCGAAATCACTGTCCTCG 58.355 50.000 0.00 0.0 0.00 4.63 F
4048 4581 1.814394 GTGATTGATGCTGCAACTGGA 59.186 47.619 6.36 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 2421 0.321671 CAGAACTTTGAGGAGCCCGA 59.678 55.000 0.00 0.0 0.00 5.14 R
2952 3450 0.460284 CCGCCTTATGAAGAGCACGT 60.460 55.000 0.00 0.0 0.00 4.49 R
3141 3646 1.820519 TCTTGATTGTTGCAGCATCCC 59.179 47.619 3.36 0.0 0.00 3.85 R
3808 4335 3.418684 AACACGCAGTTCTAGGGAAAT 57.581 42.857 0.00 0.0 41.61 2.17 R
3848 4381 9.499479 TTCTTTTATAAATGGCTGCAAAATGAA 57.501 25.926 0.50 0.0 0.00 2.57 R
4361 4921 0.038892 CATGACCACACTGGCTTTGC 60.039 55.000 0.00 0.0 42.67 3.68 R
4522 5091 1.865340 GACGACCAAAGTGACAACCTC 59.135 52.381 0.00 0.0 0.00 3.85 R
5537 6193 0.111061 TGTTCACTTGAGCTGCCCAT 59.889 50.000 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 68 1.838913 ACACGCACAAACATCTTTGC 58.161 45.000 0.00 0.00 40.57 3.68
83 85 2.189594 TGCAGTCTTTGTCATGGAGG 57.810 50.000 0.00 0.00 0.00 4.30
90 92 2.173519 CTTTGTCATGGAGGGCATTGT 58.826 47.619 0.00 0.00 0.00 2.71
95 97 2.165030 GTCATGGAGGGCATTGTTCTTG 59.835 50.000 0.00 0.00 0.00 3.02
105 107 0.813184 ATTGTTCTTGCCGAGCATGG 59.187 50.000 10.39 0.00 38.76 3.66
112 114 3.204827 GCCGAGCATGGCGAATGT 61.205 61.111 3.27 0.00 46.75 2.71
113 115 2.711311 CCGAGCATGGCGAATGTG 59.289 61.111 0.00 0.00 38.65 3.21
153 155 3.680786 GGCGGCGGCTTTCCTTTT 61.681 61.111 27.22 0.00 39.81 2.27
154 156 2.337246 GGCGGCGGCTTTCCTTTTA 61.337 57.895 27.22 0.00 39.81 1.52
156 158 1.504900 CGGCGGCTTTCCTTTTACC 59.495 57.895 7.61 0.00 0.00 2.85
157 159 1.504900 GGCGGCTTTCCTTTTACCG 59.495 57.895 0.00 0.00 46.50 4.02
158 160 1.504900 GCGGCTTTCCTTTTACCGG 59.495 57.895 0.00 0.00 43.99 5.28
159 161 1.504900 CGGCTTTCCTTTTACCGGC 59.495 57.895 0.00 0.00 40.18 6.13
160 162 1.238625 CGGCTTTCCTTTTACCGGCA 61.239 55.000 0.00 0.00 40.18 5.69
161 163 0.242825 GGCTTTCCTTTTACCGGCAC 59.757 55.000 0.00 0.00 0.00 5.01
162 164 0.242825 GCTTTCCTTTTACCGGCACC 59.757 55.000 0.00 0.00 0.00 5.01
163 165 1.611519 CTTTCCTTTTACCGGCACCA 58.388 50.000 0.00 0.00 0.00 4.17
164 166 1.268625 CTTTCCTTTTACCGGCACCAC 59.731 52.381 0.00 0.00 0.00 4.16
177 434 1.605202 GGCACCACGAAATGCATGTTT 60.605 47.619 0.00 0.00 43.93 2.83
178 435 2.134346 GCACCACGAAATGCATGTTTT 58.866 42.857 0.00 0.00 41.65 2.43
181 438 3.184178 CACCACGAAATGCATGTTTTTCC 59.816 43.478 0.00 0.00 0.00 3.13
182 439 2.408032 CCACGAAATGCATGTTTTTCCG 59.592 45.455 0.00 0.00 0.00 4.30
183 440 2.408032 CACGAAATGCATGTTTTTCCGG 59.592 45.455 0.00 0.00 0.00 5.14
184 441 1.389784 CGAAATGCATGTTTTTCCGGC 59.610 47.619 0.00 0.00 0.00 6.13
185 442 2.687370 GAAATGCATGTTTTTCCGGCT 58.313 42.857 0.00 0.00 0.00 5.52
186 443 3.671971 CGAAATGCATGTTTTTCCGGCTA 60.672 43.478 0.00 0.00 0.00 3.93
188 445 5.587289 GAAATGCATGTTTTTCCGGCTATA 58.413 37.500 0.00 0.00 0.00 1.31
190 447 5.789643 ATGCATGTTTTTCCGGCTATATT 57.210 34.783 0.00 0.00 0.00 1.28
191 448 6.892658 ATGCATGTTTTTCCGGCTATATTA 57.107 33.333 0.00 0.00 0.00 0.98
192 449 6.067263 TGCATGTTTTTCCGGCTATATTAC 57.933 37.500 0.00 0.00 0.00 1.89
193 450 5.590663 TGCATGTTTTTCCGGCTATATTACA 59.409 36.000 0.00 0.00 0.00 2.41
194 451 6.095580 TGCATGTTTTTCCGGCTATATTACAA 59.904 34.615 0.00 0.00 0.00 2.41
196 453 6.687081 TGTTTTTCCGGCTATATTACAAGG 57.313 37.500 0.00 0.00 0.00 3.61
197 454 6.181908 TGTTTTTCCGGCTATATTACAAGGT 58.818 36.000 0.00 0.00 0.00 3.50
198 455 6.660094 TGTTTTTCCGGCTATATTACAAGGTT 59.340 34.615 0.00 0.00 0.00 3.50
202 459 5.991861 TCCGGCTATATTACAAGGTTTTGA 58.008 37.500 0.00 0.00 37.73 2.69
212 469 4.582701 ACAAGGTTTTGATCGATTTGCA 57.417 36.364 0.00 0.00 37.73 4.08
213 470 4.549458 ACAAGGTTTTGATCGATTTGCAG 58.451 39.130 0.00 0.00 37.73 4.41
228 485 6.692681 TCGATTTGCAGAGAGTTTTGAAAAAG 59.307 34.615 0.00 0.00 0.00 2.27
229 486 6.692681 CGATTTGCAGAGAGTTTTGAAAAAGA 59.307 34.615 0.00 0.00 0.00 2.52
250 507 5.694995 AGACAGAAAAGGATTTCAGGTGAA 58.305 37.500 4.34 0.00 46.03 3.18
255 512 2.206576 AGGATTTCAGGTGAAGGCAC 57.793 50.000 0.00 0.00 44.39 5.01
258 706 0.609131 ATTTCAGGTGAAGGCACGGG 60.609 55.000 0.00 0.00 46.09 5.28
296 744 9.707957 ATTATCAATACCAACCCAAAGTTATGA 57.292 29.630 0.00 0.00 36.18 2.15
297 745 9.707957 TTATCAATACCAACCCAAAGTTATGAT 57.292 29.630 0.00 0.00 36.18 2.45
299 747 8.746052 TCAATACCAACCCAAAGTTATGATAG 57.254 34.615 0.00 0.00 36.18 2.08
301 749 9.354673 CAATACCAACCCAAAGTTATGATAGAT 57.645 33.333 0.00 0.00 36.18 1.98
302 750 9.936329 AATACCAACCCAAAGTTATGATAGATT 57.064 29.630 0.00 0.00 36.18 2.40
305 753 9.185680 ACCAACCCAAAGTTATGATAGATTAAC 57.814 33.333 0.00 0.00 36.18 2.01
306 754 8.342634 CCAACCCAAAGTTATGATAGATTAACG 58.657 37.037 0.00 0.00 36.18 3.18
346 794 1.494824 ACGTTTCTTGCGAGTACACC 58.505 50.000 0.00 0.00 0.00 4.16
361 809 9.602568 TGCGAGTACACCTTTTAATCATAAATA 57.397 29.630 0.00 0.00 31.33 1.40
562 1021 9.194972 TCATGCCCTCAACAATTTAACATATTA 57.805 29.630 0.00 0.00 0.00 0.98
578 1037 2.526888 ATTACAGACAGGTCCCTCGA 57.473 50.000 0.00 0.00 0.00 4.04
579 1038 1.835494 TTACAGACAGGTCCCTCGAG 58.165 55.000 5.13 5.13 0.00 4.04
875 1334 3.090037 TCGCTGTTTAAGGCTCTCTACT 58.910 45.455 0.00 0.00 0.00 2.57
881 1340 6.428385 TGTTTAAGGCTCTCTACTACGTAC 57.572 41.667 0.00 0.00 0.00 3.67
882 1341 6.176183 TGTTTAAGGCTCTCTACTACGTACT 58.824 40.000 0.00 0.00 0.00 2.73
883 1342 7.331026 TGTTTAAGGCTCTCTACTACGTACTA 58.669 38.462 0.00 0.00 0.00 1.82
884 1343 7.278868 TGTTTAAGGCTCTCTACTACGTACTAC 59.721 40.741 0.00 0.00 0.00 2.73
885 1344 4.335400 AGGCTCTCTACTACGTACTACC 57.665 50.000 0.00 0.00 0.00 3.18
886 1345 3.966665 AGGCTCTCTACTACGTACTACCT 59.033 47.826 0.00 0.00 0.00 3.08
887 1346 5.144100 AGGCTCTCTACTACGTACTACCTA 58.856 45.833 0.00 0.00 0.00 3.08
921 1380 1.954382 TGGTATTCTCTGATCCGTCGG 59.046 52.381 4.39 4.39 0.00 4.79
1171 1648 1.063190 AGATACGGGACCAGATCACCA 60.063 52.381 0.00 0.00 0.00 4.17
1449 1929 2.774351 GGGCAGTGGGAGGGCTAT 60.774 66.667 0.00 0.00 0.00 2.97
1452 1932 2.512896 CAGTGGGAGGGCTATGGC 59.487 66.667 0.00 0.00 37.82 4.40
1482 1974 2.280389 CACAGCTCGTGCCAGTGT 60.280 61.111 18.81 9.86 39.19 3.55
1484 1976 3.046087 CAGCTCGTGCCAGTGTGG 61.046 66.667 5.73 0.00 41.55 4.17
1542 2034 1.599240 GGAGAGCATTCCGATGGCC 60.599 63.158 0.00 0.00 33.72 5.36
1623 2115 0.738762 CGTCAGAGTACGACCGGAGA 60.739 60.000 9.46 0.00 45.68 3.71
1803 2295 0.166814 GCACATCACCGAAGCAGAAC 59.833 55.000 0.00 0.00 0.00 3.01
1805 2297 0.396435 ACATCACCGAAGCAGAACCA 59.604 50.000 0.00 0.00 0.00 3.67
1842 2334 3.499918 CCTGCTCAGAGGTTGTTACTTTG 59.500 47.826 0.00 0.00 0.00 2.77
1856 2354 1.322442 ACTTTGAAGCTCAAGGGTGC 58.678 50.000 10.94 0.00 37.72 5.01
1899 2397 3.211803 TCATCGTCTTTCAGTGTACCG 57.788 47.619 0.00 0.00 0.00 4.02
1905 2403 3.362693 CGTCTTTCAGTGTACCGAAAAGC 60.363 47.826 0.00 0.00 31.10 3.51
1923 2421 1.429825 CGTGAGAAGCTCCGATCGT 59.570 57.895 15.09 0.00 0.00 3.73
2400 2898 6.394345 AAGGATGGATTTAGTGGAGAAACT 57.606 37.500 0.00 0.00 0.00 2.66
2401 2899 7.365652 GGAAGGATGGATTTAGTGGAGAAACTA 60.366 40.741 0.00 0.00 0.00 2.24
2402 2900 7.698163 AGGATGGATTTAGTGGAGAAACTAT 57.302 36.000 0.00 0.00 32.78 2.12
2466 2964 4.034858 GCTAGTTGTCATGATGGTCACATG 59.965 45.833 0.00 0.00 44.20 3.21
2471 2969 3.118298 TGTCATGATGGTCACATGGGTAG 60.118 47.826 0.00 0.00 43.38 3.18
2520 3018 1.633915 ATAGCAGGAGCAGCAGCCTT 61.634 55.000 4.16 0.00 45.49 4.35
2543 3041 6.389830 TGAAGATGAAGCTACAAGCAAAAA 57.610 33.333 1.22 0.00 45.56 1.94
2561 3059 7.144000 AGCAAAAAGTATGAAGAAAAGAGCAG 58.856 34.615 0.00 0.00 0.00 4.24
2583 3081 6.197276 CAGACAAGATGACAACAACTTTGAG 58.803 40.000 0.00 0.00 37.10 3.02
2585 3083 4.202050 ACAAGATGACAACAACTTTGAGGC 60.202 41.667 0.00 0.00 37.10 4.70
2658 3156 7.844009 ACAATGACTTTGGATTTGATAGCATT 58.156 30.769 6.09 0.00 39.80 3.56
2683 3181 3.229276 AGACATGTGAAGAAGAGAGCG 57.771 47.619 1.15 0.00 0.00 5.03
2686 3184 3.839293 ACATGTGAAGAAGAGAGCGTAC 58.161 45.455 0.00 0.00 0.00 3.67
2694 3192 4.364415 AGAAGAGAGCGTACAAGATGAC 57.636 45.455 0.00 0.00 0.00 3.06
2700 3198 2.721603 GAGCGTACAAGATGACTATGCG 59.278 50.000 0.00 0.00 0.00 4.73
2715 3213 1.645034 ATGCGAAATCACTGTCCTCG 58.355 50.000 0.00 0.00 0.00 4.63
2883 3381 7.820386 GGTGGTTTCTTAAAGAAAGGTTTCAAA 59.180 33.333 5.30 0.00 44.07 2.69
2963 3461 3.320626 CAATCTCTGAACGTGCTCTTCA 58.679 45.455 0.00 0.00 0.00 3.02
3023 3521 7.893302 TGGTTCATATTGGTAAGTCATTTCCTT 59.107 33.333 0.00 0.00 0.00 3.36
3033 3531 7.454380 TGGTAAGTCATTTCCTTTCATTTGGAT 59.546 33.333 0.00 0.00 31.76 3.41
3081 3579 4.940046 GCATATGCTGTATATCCTGTTGCT 59.060 41.667 20.64 0.00 38.21 3.91
3127 3632 2.092968 TCATCTGCCCAGAACATACACC 60.093 50.000 1.62 0.00 41.36 4.16
3138 3643 6.238648 CCAGAACATACACCTTTCTTACCTT 58.761 40.000 0.00 0.00 0.00 3.50
3140 3645 7.881232 CCAGAACATACACCTTTCTTACCTTAA 59.119 37.037 0.00 0.00 0.00 1.85
3141 3646 8.936864 CAGAACATACACCTTTCTTACCTTAAG 58.063 37.037 0.00 0.00 37.13 1.85
3151 3656 2.843730 TCTTACCTTAAGGGATGCTGCA 59.156 45.455 25.31 4.13 40.27 4.41
3169 3674 4.384846 GCTGCAACAATCAAGAGACAAATG 59.615 41.667 0.00 0.00 0.00 2.32
3374 3882 9.194972 TCATCTTGAAATGATCACTAGACTAGT 57.805 33.333 9.45 9.45 37.92 2.57
3442 3952 8.252417 TCATCATTGATTTGTATTCTTTGGTGG 58.748 33.333 0.00 0.00 0.00 4.61
3449 3959 4.098914 TGTATTCTTTGGTGGTTGCTCT 57.901 40.909 0.00 0.00 0.00 4.09
3488 4008 8.897872 AGCTCAAAATCAGAATTCAATGTTTT 57.102 26.923 8.44 6.63 0.00 2.43
3520 4040 7.390440 CCTTTAACCAGACACAACATTCTGATA 59.610 37.037 0.08 0.00 41.65 2.15
3663 4190 8.294577 GGTTACAGTAACTTTTAATTCACAGGG 58.705 37.037 20.54 0.00 38.68 4.45
3760 4287 2.104359 TTTGGGGTGTCATGGGGCAT 62.104 55.000 0.00 0.00 0.00 4.40
3791 4318 5.701290 AGCGGCATTATTCCTGTAAGATAAC 59.299 40.000 1.45 0.00 34.07 1.89
3808 4335 6.581388 AGATAACTCTTTTCCATGGGATGA 57.419 37.500 13.02 3.95 0.00 2.92
3848 4381 2.865119 TGCATGTCATGACCAGTCTT 57.135 45.000 22.85 0.00 0.00 3.01
4048 4581 1.814394 GTGATTGATGCTGCAACTGGA 59.186 47.619 6.36 0.00 0.00 3.86
4116 4649 3.306989 CCTGTACAGACTGCATTTCCTCA 60.307 47.826 24.68 0.00 0.00 3.86
4132 4665 2.518407 TCCTCAGGAAGAGTGGGCTATA 59.482 50.000 0.00 0.00 43.12 1.31
4133 4666 3.142977 TCCTCAGGAAGAGTGGGCTATAT 59.857 47.826 0.00 0.00 43.12 0.86
4134 4667 4.357097 TCCTCAGGAAGAGTGGGCTATATA 59.643 45.833 0.00 0.00 43.12 0.86
4135 4668 5.016782 TCCTCAGGAAGAGTGGGCTATATAT 59.983 44.000 0.00 0.00 43.12 0.86
4136 4669 6.219772 TCCTCAGGAAGAGTGGGCTATATATA 59.780 42.308 0.00 0.00 43.12 0.86
4137 4670 7.072562 CCTCAGGAAGAGTGGGCTATATATAT 58.927 42.308 0.00 0.00 43.12 0.86
4138 4671 8.228206 CCTCAGGAAGAGTGGGCTATATATATA 58.772 40.741 2.49 2.49 43.12 0.86
4139 4672 9.821240 CTCAGGAAGAGTGGGCTATATATATAT 57.179 37.037 10.10 10.10 39.62 0.86
4231 4786 9.877178 ACACTAGTTTTGGTTTCTAGATATCTG 57.123 33.333 15.79 5.75 36.17 2.90
4392 4961 3.088532 TGTGGTCATGCCTTATTTCCAC 58.911 45.455 0.00 0.00 38.95 4.02
4424 4993 6.638468 GGTCAACATCATTTGTTCACTTTCTC 59.362 38.462 0.00 0.00 45.55 2.87
4452 5021 5.138125 ACCATTTCTTGCTGTGGTTATTG 57.862 39.130 0.00 0.00 42.03 1.90
4522 5091 4.330894 ACTGATATCATGTGAACTTGTGCG 59.669 41.667 5.72 0.00 0.00 5.34
4604 5173 3.066621 TGCTTTTAGCCACAACTTGTCTG 59.933 43.478 0.00 0.00 41.51 3.51
4622 5191 4.021981 TGTCTGAACTCTGAGTACCATGTG 60.022 45.833 11.30 1.97 0.00 3.21
4663 5236 5.536554 TTCTTGATCAGCAAATCGTCTTC 57.463 39.130 0.00 0.00 35.74 2.87
4792 5369 6.661377 TGAAGAGATAAGTTAGCACTCTGACT 59.339 38.462 13.82 3.82 40.41 3.41
4806 5383 5.530712 CACTCTGACTGTCTATGATGATGG 58.469 45.833 9.51 0.00 0.00 3.51
4813 5390 4.202336 ACTGTCTATGATGATGGCTCCTTG 60.202 45.833 0.00 0.00 0.00 3.61
4814 5391 3.072944 GTCTATGATGATGGCTCCTTGC 58.927 50.000 0.00 0.00 41.94 4.01
4818 5395 2.097036 TGATGATGGCTCCTTGCTTTG 58.903 47.619 0.00 0.00 42.39 2.77
4822 5399 2.305009 GATGGCTCCTTGCTTTGCTAT 58.695 47.619 0.00 0.00 42.39 2.97
4827 5404 0.107214 TCCTTGCTTTGCTATCCCCG 60.107 55.000 0.00 0.00 0.00 5.73
4828 5405 0.394352 CCTTGCTTTGCTATCCCCGT 60.394 55.000 0.00 0.00 0.00 5.28
4829 5406 0.734889 CTTGCTTTGCTATCCCCGTG 59.265 55.000 0.00 0.00 0.00 4.94
4837 5414 1.458777 CTATCCCCGTGCCCTACCA 60.459 63.158 0.00 0.00 0.00 3.25
4842 5419 3.319198 CCGTGCCCTACCACACCT 61.319 66.667 0.00 0.00 35.47 4.00
4844 5421 2.879233 CGTGCCCTACCACACCTGT 61.879 63.158 0.00 0.00 35.47 4.00
4852 5429 0.323629 TACCACACCTGTAAGCTGCC 59.676 55.000 0.00 0.00 0.00 4.85
4854 5431 0.957395 CCACACCTGTAAGCTGCCTG 60.957 60.000 0.00 0.00 0.00 4.85
4876 5455 6.238897 CCTGTGCAAGTTAAATGTTTGGACTA 60.239 38.462 9.00 0.00 41.75 2.59
4878 5457 7.367285 TGTGCAAGTTAAATGTTTGGACTATC 58.633 34.615 9.00 0.00 41.75 2.08
4922 5501 6.136857 AGATGATACTACTTCTTGTGGCCTA 58.863 40.000 3.32 0.00 0.00 3.93
4927 5506 0.322008 ACTTCTTGTGGCCTAGCTGC 60.322 55.000 3.32 0.00 0.00 5.25
4930 5509 4.328025 TTGTGGCCTAGCTGCGCA 62.328 61.111 10.98 10.98 0.00 6.09
4976 5560 5.279456 GGAAAACCTATTTCCACACATTGCT 60.279 40.000 13.62 0.00 45.50 3.91
4998 5582 9.561069 TTGCTTTCCTTTACTTGAGATATATCC 57.439 33.333 9.18 2.12 0.00 2.59
5000 5585 7.608376 GCTTTCCTTTACTTGAGATATATCCCC 59.392 40.741 9.18 2.79 0.00 4.81
5002 5587 9.907819 TTTCCTTTACTTGAGATATATCCCCTA 57.092 33.333 9.18 0.00 0.00 3.53
5018 5603 3.714798 TCCCCTAATGATATATTCGGGCC 59.285 47.826 0.00 0.00 33.89 5.80
5025 5610 3.021695 TGATATATTCGGGCCGAGGTAG 58.978 50.000 29.30 0.00 37.14 3.18
5026 5611 1.180029 TATATTCGGGCCGAGGTAGC 58.820 55.000 29.30 0.00 37.14 3.58
5027 5612 0.542232 ATATTCGGGCCGAGGTAGCT 60.542 55.000 29.30 12.67 37.14 3.32
5028 5613 1.177256 TATTCGGGCCGAGGTAGCTC 61.177 60.000 29.30 12.04 37.14 4.09
5031 5616 3.081409 GGGCCGAGGTAGCTCCAA 61.081 66.667 16.06 0.00 39.02 3.53
5032 5617 2.501610 GGCCGAGGTAGCTCCAAG 59.498 66.667 16.06 6.63 39.02 3.61
5033 5618 2.359967 GGCCGAGGTAGCTCCAAGT 61.360 63.158 16.06 0.00 39.02 3.16
5034 5619 1.597461 GCCGAGGTAGCTCCAAGTT 59.403 57.895 16.06 0.00 39.02 2.66
5035 5620 0.460459 GCCGAGGTAGCTCCAAGTTC 60.460 60.000 16.06 0.00 39.02 3.01
5036 5621 0.175989 CCGAGGTAGCTCCAAGTTCC 59.824 60.000 16.06 0.00 39.02 3.62
5037 5622 1.187087 CGAGGTAGCTCCAAGTTCCT 58.813 55.000 16.06 0.00 39.02 3.36
5038 5623 1.135333 CGAGGTAGCTCCAAGTTCCTC 59.865 57.143 16.06 0.00 39.02 3.71
5039 5624 2.462723 GAGGTAGCTCCAAGTTCCTCT 58.537 52.381 10.97 0.00 38.56 3.69
5040 5625 2.835156 GAGGTAGCTCCAAGTTCCTCTT 59.165 50.000 10.97 0.00 38.56 2.85
5041 5626 4.024670 GAGGTAGCTCCAAGTTCCTCTTA 58.975 47.826 10.97 0.00 38.56 2.10
5042 5627 4.625963 AGGTAGCTCCAAGTTCCTCTTAT 58.374 43.478 0.00 0.00 39.02 1.73
5043 5628 5.033522 AGGTAGCTCCAAGTTCCTCTTATT 58.966 41.667 0.00 0.00 39.02 1.40
5044 5629 5.104735 AGGTAGCTCCAAGTTCCTCTTATTG 60.105 44.000 0.00 0.00 39.02 1.90
5045 5630 4.917906 AGCTCCAAGTTCCTCTTATTGT 57.082 40.909 0.00 0.00 34.66 2.71
5046 5631 4.583871 AGCTCCAAGTTCCTCTTATTGTG 58.416 43.478 0.00 0.00 34.66 3.33
5047 5632 3.127721 GCTCCAAGTTCCTCTTATTGTGC 59.872 47.826 0.00 0.00 34.66 4.57
5048 5633 4.326826 CTCCAAGTTCCTCTTATTGTGCA 58.673 43.478 0.00 0.00 34.66 4.57
5049 5634 4.922206 TCCAAGTTCCTCTTATTGTGCAT 58.078 39.130 0.00 0.00 34.66 3.96
5050 5635 4.943705 TCCAAGTTCCTCTTATTGTGCATC 59.056 41.667 0.00 0.00 34.66 3.91
5051 5636 4.096984 CCAAGTTCCTCTTATTGTGCATCC 59.903 45.833 0.00 0.00 34.66 3.51
5052 5637 4.574674 AGTTCCTCTTATTGTGCATCCA 57.425 40.909 0.00 0.00 0.00 3.41
5053 5638 4.265073 AGTTCCTCTTATTGTGCATCCAC 58.735 43.478 0.00 0.00 42.40 4.02
5054 5639 5.748734 AAGTTCCTCTTATTGTGCATCCACA 60.749 40.000 0.00 0.00 41.22 4.17
5055 5640 7.740733 AAGTTCCTCTTATTGTGCATCCACAC 61.741 42.308 0.00 0.00 41.94 3.82
5061 5646 3.741707 TGTGCATCCACACATTCCA 57.258 47.368 0.00 0.00 46.51 3.53
5062 5647 2.219080 TGTGCATCCACACATTCCAT 57.781 45.000 0.00 0.00 46.51 3.41
5063 5648 2.527497 TGTGCATCCACACATTCCATT 58.473 42.857 0.00 0.00 46.51 3.16
5064 5649 2.492881 TGTGCATCCACACATTCCATTC 59.507 45.455 0.00 0.00 46.51 2.67
5065 5650 2.101783 TGCATCCACACATTCCATTCC 58.898 47.619 0.00 0.00 0.00 3.01
5066 5651 2.291735 TGCATCCACACATTCCATTCCT 60.292 45.455 0.00 0.00 0.00 3.36
5067 5652 2.762327 GCATCCACACATTCCATTCCTT 59.238 45.455 0.00 0.00 0.00 3.36
5068 5653 3.196254 GCATCCACACATTCCATTCCTTT 59.804 43.478 0.00 0.00 0.00 3.11
5069 5654 4.402155 GCATCCACACATTCCATTCCTTTA 59.598 41.667 0.00 0.00 0.00 1.85
5070 5655 5.679638 GCATCCACACATTCCATTCCTTTAC 60.680 44.000 0.00 0.00 0.00 2.01
5071 5656 4.340617 TCCACACATTCCATTCCTTTACC 58.659 43.478 0.00 0.00 0.00 2.85
5072 5657 4.044065 TCCACACATTCCATTCCTTTACCT 59.956 41.667 0.00 0.00 0.00 3.08
5073 5658 4.158394 CCACACATTCCATTCCTTTACCTG 59.842 45.833 0.00 0.00 0.00 4.00
5074 5659 5.009631 CACACATTCCATTCCTTTACCTGA 58.990 41.667 0.00 0.00 0.00 3.86
5075 5660 5.476599 CACACATTCCATTCCTTTACCTGAA 59.523 40.000 0.00 0.00 0.00 3.02
5076 5661 6.015519 CACACATTCCATTCCTTTACCTGAAA 60.016 38.462 0.00 0.00 0.00 2.69
5077 5662 6.015434 ACACATTCCATTCCTTTACCTGAAAC 60.015 38.462 0.00 0.00 0.00 2.78
5078 5663 6.015519 CACATTCCATTCCTTTACCTGAAACA 60.016 38.462 0.00 0.00 0.00 2.83
5079 5664 6.725834 ACATTCCATTCCTTTACCTGAAACAT 59.274 34.615 0.00 0.00 0.00 2.71
5080 5665 6.834168 TTCCATTCCTTTACCTGAAACATC 57.166 37.500 0.00 0.00 0.00 3.06
5081 5666 5.261216 TCCATTCCTTTACCTGAAACATCC 58.739 41.667 0.00 0.00 0.00 3.51
5082 5667 5.016173 CCATTCCTTTACCTGAAACATCCA 58.984 41.667 0.00 0.00 0.00 3.41
5083 5668 5.658190 CCATTCCTTTACCTGAAACATCCAT 59.342 40.000 0.00 0.00 0.00 3.41
5084 5669 6.183360 CCATTCCTTTACCTGAAACATCCATC 60.183 42.308 0.00 0.00 0.00 3.51
5085 5670 4.855340 TCCTTTACCTGAAACATCCATCC 58.145 43.478 0.00 0.00 0.00 3.51
5086 5671 4.290985 TCCTTTACCTGAAACATCCATCCA 59.709 41.667 0.00 0.00 0.00 3.41
5087 5672 4.641989 CCTTTACCTGAAACATCCATCCAG 59.358 45.833 0.00 0.00 0.00 3.86
5088 5673 5.500234 CTTTACCTGAAACATCCATCCAGA 58.500 41.667 0.00 0.00 0.00 3.86
5089 5674 5.715439 TTACCTGAAACATCCATCCAGAT 57.285 39.130 0.00 0.00 0.00 2.90
5090 5675 6.823286 TTACCTGAAACATCCATCCAGATA 57.177 37.500 0.00 0.00 0.00 1.98
5091 5676 5.919348 ACCTGAAACATCCATCCAGATAT 57.081 39.130 0.00 0.00 0.00 1.63
5092 5677 8.504811 TTACCTGAAACATCCATCCAGATATA 57.495 34.615 0.00 0.00 0.00 0.86
5093 5678 7.579940 ACCTGAAACATCCATCCAGATATAT 57.420 36.000 0.00 0.00 0.00 0.86
5094 5679 7.628234 ACCTGAAACATCCATCCAGATATATC 58.372 38.462 4.42 4.42 0.00 1.63
5095 5680 7.460402 ACCTGAAACATCCATCCAGATATATCT 59.540 37.037 9.57 9.57 37.72 1.98
5096 5681 7.986320 CCTGAAACATCCATCCAGATATATCTC 59.014 40.741 12.50 0.00 34.22 2.75
5097 5682 7.855375 TGAAACATCCATCCAGATATATCTCC 58.145 38.462 12.50 0.00 34.22 3.71
5098 5683 7.681598 TGAAACATCCATCCAGATATATCTCCT 59.318 37.037 12.50 0.00 34.22 3.69
5099 5684 7.434927 AACATCCATCCAGATATATCTCCTG 57.565 40.000 12.50 9.77 34.22 3.86
5100 5685 6.750009 ACATCCATCCAGATATATCTCCTGA 58.250 40.000 12.50 9.84 34.22 3.86
5101 5686 7.371849 ACATCCATCCAGATATATCTCCTGAT 58.628 38.462 12.50 11.51 34.22 2.90
5102 5687 7.510001 ACATCCATCCAGATATATCTCCTGATC 59.490 40.741 12.50 0.00 34.22 2.92
5103 5688 6.989894 TCCATCCAGATATATCTCCTGATCA 58.010 40.000 12.50 0.00 34.22 2.92
5104 5689 7.602868 TCCATCCAGATATATCTCCTGATCAT 58.397 38.462 12.50 0.00 34.22 2.45
5105 5690 8.740512 TCCATCCAGATATATCTCCTGATCATA 58.259 37.037 12.50 1.68 34.22 2.15
5106 5691 9.549984 CCATCCAGATATATCTCCTGATCATAT 57.450 37.037 12.50 0.00 34.22 1.78
5114 5699 5.543507 ATCTCCTGATCATATATTCGGGC 57.456 43.478 7.24 0.00 38.14 6.13
5115 5700 4.352893 TCTCCTGATCATATATTCGGGCA 58.647 43.478 7.24 0.00 38.14 5.36
5116 5701 4.964897 TCTCCTGATCATATATTCGGGCAT 59.035 41.667 7.24 0.00 38.14 4.40
5117 5702 5.027293 TCCTGATCATATATTCGGGCATG 57.973 43.478 7.24 0.00 38.14 4.06
5118 5703 4.716287 TCCTGATCATATATTCGGGCATGA 59.284 41.667 0.00 0.00 38.14 3.07
5119 5704 4.813161 CCTGATCATATATTCGGGCATGAC 59.187 45.833 0.00 0.00 31.87 3.06
5120 5705 4.432712 TGATCATATATTCGGGCATGACG 58.567 43.478 0.00 0.00 30.64 4.35
5121 5706 2.616960 TCATATATTCGGGCATGACGC 58.383 47.619 0.00 0.00 41.28 5.19
5131 5717 2.789917 CATGACGCAGCTCCAAGC 59.210 61.111 0.00 0.00 42.84 4.01
5145 5731 1.239968 CCAAGCTCCTCCTGTTGTGC 61.240 60.000 0.00 0.00 0.00 4.57
5151 5737 2.301346 CTCCTCCTGTTGTGCTGTTTT 58.699 47.619 0.00 0.00 0.00 2.43
5152 5738 2.291741 CTCCTCCTGTTGTGCTGTTTTC 59.708 50.000 0.00 0.00 0.00 2.29
5153 5739 2.092429 TCCTCCTGTTGTGCTGTTTTCT 60.092 45.455 0.00 0.00 0.00 2.52
5154 5740 2.291741 CCTCCTGTTGTGCTGTTTTCTC 59.708 50.000 0.00 0.00 0.00 2.87
5155 5741 2.945008 CTCCTGTTGTGCTGTTTTCTCA 59.055 45.455 0.00 0.00 0.00 3.27
5156 5742 3.554934 TCCTGTTGTGCTGTTTTCTCAT 58.445 40.909 0.00 0.00 0.00 2.90
5158 5744 3.567164 CCTGTTGTGCTGTTTTCTCATCT 59.433 43.478 0.00 0.00 0.00 2.90
5160 5746 3.248363 TGTTGTGCTGTTTTCTCATCTCG 59.752 43.478 0.00 0.00 0.00 4.04
5163 5749 2.413453 GTGCTGTTTTCTCATCTCGTCC 59.587 50.000 0.00 0.00 0.00 4.79
5170 5756 1.478631 TCTCATCTCGTCCACTGCAT 58.521 50.000 0.00 0.00 0.00 3.96
5171 5757 2.654863 TCTCATCTCGTCCACTGCATA 58.345 47.619 0.00 0.00 0.00 3.14
5172 5758 3.225940 TCTCATCTCGTCCACTGCATAT 58.774 45.455 0.00 0.00 0.00 1.78
5173 5759 3.005155 TCTCATCTCGTCCACTGCATATG 59.995 47.826 0.00 0.00 0.00 1.78
5180 5766 4.119136 TCGTCCACTGCATATGTATGTTG 58.881 43.478 4.29 0.00 36.11 3.33
5182 5768 4.025730 CGTCCACTGCATATGTATGTTGTC 60.026 45.833 4.29 0.00 36.11 3.18
5183 5769 4.875536 GTCCACTGCATATGTATGTTGTCA 59.124 41.667 4.29 0.00 36.11 3.58
5185 5771 6.038603 GTCCACTGCATATGTATGTTGTCAAT 59.961 38.462 4.29 0.00 36.11 2.57
5194 5780 6.579666 ATGTATGTTGTCAATGCAGTTCTT 57.420 33.333 0.00 0.00 0.00 2.52
5196 5782 3.607422 TGTTGTCAATGCAGTTCTTCG 57.393 42.857 0.00 0.00 0.00 3.79
5215 5803 1.269569 CGTCGGCATAGGTAGCATTGA 60.270 52.381 0.00 0.00 0.00 2.57
5223 5811 5.334105 GGCATAGGTAGCATTGAAATGTACG 60.334 44.000 5.02 0.00 38.65 3.67
5225 5813 6.147821 GCATAGGTAGCATTGAAATGTACGAT 59.852 38.462 5.02 2.43 38.65 3.73
5226 5814 7.330946 GCATAGGTAGCATTGAAATGTACGATA 59.669 37.037 5.02 4.46 38.65 2.92
5227 5815 9.371136 CATAGGTAGCATTGAAATGTACGATAT 57.629 33.333 5.02 5.97 38.65 1.63
5228 5816 7.891183 AGGTAGCATTGAAATGTACGATATC 57.109 36.000 5.02 0.00 38.65 1.63
5248 5842 7.042051 CGATATCTTTGTGGGGTTGTAATACAG 60.042 40.741 0.34 0.00 0.00 2.74
5249 5843 4.076394 TCTTTGTGGGGTTGTAATACAGC 58.924 43.478 0.00 0.00 0.00 4.40
5258 5852 4.748600 GGGTTGTAATACAGCGGTAGAATC 59.251 45.833 2.53 0.00 31.88 2.52
5259 5853 4.748600 GGTTGTAATACAGCGGTAGAATCC 59.251 45.833 2.53 0.00 31.88 3.01
5290 5884 6.432783 CCTTGTGGAACCAACTGTAAATATCA 59.567 38.462 0.00 0.00 34.36 2.15
5292 5886 7.209471 TGTGGAACCAACTGTAAATATCAAC 57.791 36.000 0.00 0.00 34.36 3.18
5293 5887 7.001674 TGTGGAACCAACTGTAAATATCAACT 58.998 34.615 0.00 0.00 34.36 3.16
5294 5888 7.174253 TGTGGAACCAACTGTAAATATCAACTC 59.826 37.037 0.00 0.00 34.36 3.01
5295 5889 7.390718 GTGGAACCAACTGTAAATATCAACTCT 59.609 37.037 0.00 0.00 0.00 3.24
5296 5890 7.606456 TGGAACCAACTGTAAATATCAACTCTC 59.394 37.037 0.00 0.00 0.00 3.20
5297 5891 7.824779 GGAACCAACTGTAAATATCAACTCTCT 59.175 37.037 0.00 0.00 0.00 3.10
5298 5892 8.553459 AACCAACTGTAAATATCAACTCTCTG 57.447 34.615 0.00 0.00 0.00 3.35
5299 5893 6.595716 ACCAACTGTAAATATCAACTCTCTGC 59.404 38.462 0.00 0.00 0.00 4.26
5300 5894 6.037610 CCAACTGTAAATATCAACTCTCTGCC 59.962 42.308 0.00 0.00 0.00 4.85
5301 5895 6.299805 ACTGTAAATATCAACTCTCTGCCA 57.700 37.500 0.00 0.00 0.00 4.92
5302 5896 6.109359 ACTGTAAATATCAACTCTCTGCCAC 58.891 40.000 0.00 0.00 0.00 5.01
5303 5897 5.428253 TGTAAATATCAACTCTCTGCCACC 58.572 41.667 0.00 0.00 0.00 4.61
5304 5898 4.574674 AAATATCAACTCTCTGCCACCA 57.425 40.909 0.00 0.00 0.00 4.17
5305 5899 3.550437 ATATCAACTCTCTGCCACCAC 57.450 47.619 0.00 0.00 0.00 4.16
5306 5900 0.326264 ATCAACTCTCTGCCACCACC 59.674 55.000 0.00 0.00 0.00 4.61
5307 5901 0.764369 TCAACTCTCTGCCACCACCT 60.764 55.000 0.00 0.00 0.00 4.00
5308 5902 0.604780 CAACTCTCTGCCACCACCTG 60.605 60.000 0.00 0.00 0.00 4.00
5309 5903 2.046507 CTCTCTGCCACCACCTGC 60.047 66.667 0.00 0.00 0.00 4.85
5310 5904 2.527624 TCTCTGCCACCACCTGCT 60.528 61.111 0.00 0.00 0.00 4.24
5311 5905 2.359602 CTCTGCCACCACCTGCTG 60.360 66.667 0.00 0.00 0.00 4.41
5326 5920 4.666253 CTGGGTGGGTGGCTGGTG 62.666 72.222 0.00 0.00 0.00 4.17
5328 5922 4.974721 GGGTGGGTGGCTGGTGTG 62.975 72.222 0.00 0.00 0.00 3.82
5329 5923 4.204028 GGTGGGTGGCTGGTGTGT 62.204 66.667 0.00 0.00 0.00 3.72
5330 5924 2.906897 GTGGGTGGCTGGTGTGTG 60.907 66.667 0.00 0.00 0.00 3.82
5331 5925 4.892965 TGGGTGGCTGGTGTGTGC 62.893 66.667 0.00 0.00 0.00 4.57
5332 5926 4.586235 GGGTGGCTGGTGTGTGCT 62.586 66.667 0.00 0.00 0.00 4.40
5333 5927 2.519302 GGTGGCTGGTGTGTGCTT 60.519 61.111 0.00 0.00 0.00 3.91
5366 6001 1.142262 ACCTGGTTTGTACACCTGTCC 59.858 52.381 0.00 0.00 37.75 4.02
5375 6010 4.704833 CACCTGTCCTGTGCCCGG 62.705 72.222 0.00 0.00 0.00 5.73
5428 6073 9.241919 CCATGGTTGGAATGCTATAATAACATA 57.758 33.333 2.57 0.00 46.92 2.29
5476 6125 4.552166 TTTGTACTGCTGTTCTTCTTGC 57.448 40.909 0.09 0.00 0.00 4.01
5498 6147 0.455005 GAAGAGCAGCCAATCCTTGC 59.545 55.000 0.00 0.00 38.09 4.01
5537 6193 2.275089 CGGCACATGGGAATGGGA 59.725 61.111 0.00 0.00 0.00 4.37
5538 6194 1.152694 CGGCACATGGGAATGGGAT 60.153 57.895 0.00 0.00 0.00 3.85
5539 6195 1.457823 CGGCACATGGGAATGGGATG 61.458 60.000 0.00 0.00 0.00 3.51
5542 6198 1.117142 CACATGGGAATGGGATGGGC 61.117 60.000 0.00 0.00 0.00 5.36
5547 6203 1.530183 GGAATGGGATGGGCAGCTC 60.530 63.158 0.00 0.00 0.00 4.09
5555 6211 0.807496 GATGGGCAGCTCAAGTGAAC 59.193 55.000 0.00 0.00 0.00 3.18
5565 6221 0.657312 TCAAGTGAACACAAGCTGCG 59.343 50.000 7.68 0.00 0.00 5.18
5596 6253 7.334171 TGAATCGATTGAGTCAGCAAATCTTTA 59.666 33.333 16.96 0.00 43.69 1.85
5661 6318 6.208402 GGATCTTGCTATACAGTCAGAGATGA 59.792 42.308 0.00 0.00 0.00 2.92
5662 6319 7.093814 GGATCTTGCTATACAGTCAGAGATGAT 60.094 40.741 0.00 0.00 0.00 2.45
5663 6320 7.213216 TCTTGCTATACAGTCAGAGATGATC 57.787 40.000 0.00 0.00 0.00 2.92
5664 6321 6.774656 TCTTGCTATACAGTCAGAGATGATCA 59.225 38.462 0.00 0.00 0.00 2.92
5665 6322 6.572167 TGCTATACAGTCAGAGATGATCAG 57.428 41.667 0.09 0.00 0.00 2.90
5701 6363 2.190578 GCTTACCGGGCTGCTGAT 59.809 61.111 6.32 0.00 0.00 2.90
5706 6368 3.805807 GCTTACCGGGCTGCTGATATTTA 60.806 47.826 6.32 0.00 0.00 1.40
5712 6374 2.159653 GGGCTGCTGATATTTAATCGCG 60.160 50.000 0.00 0.00 0.00 5.87
5713 6375 2.480419 GGCTGCTGATATTTAATCGCGT 59.520 45.455 5.77 0.00 0.00 6.01
5715 6377 3.184379 GCTGCTGATATTTAATCGCGTCA 59.816 43.478 5.77 0.00 0.00 4.35
5716 6378 4.143030 GCTGCTGATATTTAATCGCGTCAT 60.143 41.667 5.77 0.00 0.00 3.06
5717 6379 5.515548 TGCTGATATTTAATCGCGTCATC 57.484 39.130 5.77 0.00 0.00 2.92
5718 6380 5.230182 TGCTGATATTTAATCGCGTCATCT 58.770 37.500 5.77 0.00 0.00 2.90
5719 6381 6.386654 TGCTGATATTTAATCGCGTCATCTA 58.613 36.000 5.77 0.00 0.00 1.98
5725 6387 9.478019 GATATTTAATCGCGTCATCTATTTTGG 57.522 33.333 5.77 0.00 0.00 3.28
5726 6388 6.912203 TTTAATCGCGTCATCTATTTTGGA 57.088 33.333 5.77 0.00 0.00 3.53
5727 6389 6.912203 TTAATCGCGTCATCTATTTTGGAA 57.088 33.333 5.77 0.00 0.00 3.53
5728 6390 4.795970 ATCGCGTCATCTATTTTGGAAC 57.204 40.909 5.77 0.00 0.00 3.62
5729 6391 2.601314 TCGCGTCATCTATTTTGGAACG 59.399 45.455 5.77 0.00 0.00 3.95
5730 6392 2.285602 CGCGTCATCTATTTTGGAACGG 60.286 50.000 0.00 0.00 0.00 4.44
5731 6393 2.933906 GCGTCATCTATTTTGGAACGGA 59.066 45.455 0.00 0.00 0.00 4.69
5732 6394 3.001330 GCGTCATCTATTTTGGAACGGAG 59.999 47.826 0.00 0.00 0.00 4.63
5733 6395 3.555956 CGTCATCTATTTTGGAACGGAGG 59.444 47.826 0.00 0.00 0.00 4.30
5734 6396 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5735 6397 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
5736 6398 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
5738 6400 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
5771 6443 2.056577 CGGAGAGGAAACACAACGTAC 58.943 52.381 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 7.231607 TGTATAAGTTTCTTTTTCGCGTGATC 58.768 34.615 5.77 0.00 0.00 2.92
66 68 1.271543 TGCCCTCCATGACAAAGACTG 60.272 52.381 0.00 0.00 0.00 3.51
105 107 1.442017 GAAACGTGGGCACATTCGC 60.442 57.895 0.00 0.00 0.00 4.70
112 114 1.519751 CCCGAAATGAAACGTGGGCA 61.520 55.000 0.00 0.00 0.00 5.36
113 115 1.211709 CCCGAAATGAAACGTGGGC 59.788 57.895 0.00 0.00 0.00 5.36
116 118 1.154301 CCGCCCGAAATGAAACGTG 60.154 57.895 0.00 0.00 0.00 4.49
142 144 0.242825 GTGCCGGTAAAAGGAAAGCC 59.757 55.000 1.90 0.00 0.00 4.35
143 145 0.242825 GGTGCCGGTAAAAGGAAAGC 59.757 55.000 1.90 0.00 0.00 3.51
144 146 1.268625 GTGGTGCCGGTAAAAGGAAAG 59.731 52.381 1.90 0.00 0.00 2.62
146 148 0.885596 CGTGGTGCCGGTAAAAGGAA 60.886 55.000 1.90 0.00 0.00 3.36
148 150 0.885596 TTCGTGGTGCCGGTAAAAGG 60.886 55.000 1.90 0.00 0.00 3.11
149 151 0.945813 TTTCGTGGTGCCGGTAAAAG 59.054 50.000 1.90 0.00 0.00 2.27
151 153 0.875728 CATTTCGTGGTGCCGGTAAA 59.124 50.000 1.90 0.00 0.00 2.01
153 155 2.036006 GCATTTCGTGGTGCCGGTA 61.036 57.895 1.90 0.00 35.35 4.02
154 156 3.361977 GCATTTCGTGGTGCCGGT 61.362 61.111 1.90 0.00 35.35 5.28
156 158 1.514657 CATGCATTTCGTGGTGCCG 60.515 57.895 0.00 0.00 40.56 5.69
157 159 0.038343 AACATGCATTTCGTGGTGCC 60.038 50.000 0.00 0.00 40.56 5.01
158 160 1.782044 AAACATGCATTTCGTGGTGC 58.218 45.000 0.00 0.00 41.61 5.01
159 161 3.184178 GGAAAAACATGCATTTCGTGGTG 59.816 43.478 14.24 0.00 36.60 4.17
160 162 3.389221 GGAAAAACATGCATTTCGTGGT 58.611 40.909 14.24 0.00 36.60 4.16
161 163 2.408032 CGGAAAAACATGCATTTCGTGG 59.592 45.455 14.24 6.03 36.60 4.94
162 164 2.408032 CCGGAAAAACATGCATTTCGTG 59.592 45.455 14.24 10.55 36.60 4.35
163 165 2.671596 CCGGAAAAACATGCATTTCGT 58.328 42.857 14.24 0.00 36.60 3.85
164 166 1.389784 GCCGGAAAAACATGCATTTCG 59.610 47.619 5.05 8.08 36.60 3.46
177 434 6.885376 TCAAAACCTTGTAATATAGCCGGAAA 59.115 34.615 5.05 0.00 33.94 3.13
178 435 6.416415 TCAAAACCTTGTAATATAGCCGGAA 58.584 36.000 5.05 0.00 33.94 4.30
181 438 6.422701 TCGATCAAAACCTTGTAATATAGCCG 59.577 38.462 0.00 0.00 33.94 5.52
182 439 7.724305 TCGATCAAAACCTTGTAATATAGCC 57.276 36.000 0.00 0.00 33.94 3.93
185 442 9.944663 GCAAATCGATCAAAACCTTGTAATATA 57.055 29.630 0.00 0.00 33.94 0.86
186 443 8.465999 TGCAAATCGATCAAAACCTTGTAATAT 58.534 29.630 0.00 0.00 33.94 1.28
188 445 6.686630 TGCAAATCGATCAAAACCTTGTAAT 58.313 32.000 0.00 0.00 33.94 1.89
190 447 5.471797 TCTGCAAATCGATCAAAACCTTGTA 59.528 36.000 0.00 0.00 33.94 2.41
191 448 4.278170 TCTGCAAATCGATCAAAACCTTGT 59.722 37.500 0.00 0.00 33.94 3.16
192 449 4.797471 TCTGCAAATCGATCAAAACCTTG 58.203 39.130 0.00 0.00 0.00 3.61
193 450 4.761739 TCTCTGCAAATCGATCAAAACCTT 59.238 37.500 0.00 0.00 0.00 3.50
194 451 4.326826 TCTCTGCAAATCGATCAAAACCT 58.673 39.130 0.00 0.00 0.00 3.50
196 453 5.288543 ACTCTCTGCAAATCGATCAAAAC 57.711 39.130 0.00 0.00 0.00 2.43
197 454 5.947228 AACTCTCTGCAAATCGATCAAAA 57.053 34.783 0.00 0.00 0.00 2.44
198 455 5.947228 AAACTCTCTGCAAATCGATCAAA 57.053 34.783 0.00 0.00 0.00 2.69
202 459 5.947228 TTCAAAACTCTCTGCAAATCGAT 57.053 34.783 0.00 0.00 0.00 3.59
212 469 8.246871 CCTTTTCTGTCTTTTTCAAAACTCTCT 58.753 33.333 0.00 0.00 0.00 3.10
213 470 8.244113 TCCTTTTCTGTCTTTTTCAAAACTCTC 58.756 33.333 0.00 0.00 0.00 3.20
228 485 5.048434 CCTTCACCTGAAATCCTTTTCTGTC 60.048 44.000 0.75 0.00 41.54 3.51
229 486 4.829492 CCTTCACCTGAAATCCTTTTCTGT 59.171 41.667 0.75 0.00 41.54 3.41
250 507 3.637911 TTAATTGTATCACCCGTGCCT 57.362 42.857 0.00 0.00 0.00 4.75
296 744 4.839121 TCCAAGCAACACCGTTAATCTAT 58.161 39.130 0.00 0.00 0.00 1.98
297 745 4.250464 CTCCAAGCAACACCGTTAATCTA 58.750 43.478 0.00 0.00 0.00 1.98
298 746 3.074412 CTCCAAGCAACACCGTTAATCT 58.926 45.455 0.00 0.00 0.00 2.40
299 747 2.812011 ACTCCAAGCAACACCGTTAATC 59.188 45.455 0.00 0.00 0.00 1.75
301 749 2.335316 ACTCCAAGCAACACCGTTAA 57.665 45.000 0.00 0.00 0.00 2.01
302 750 3.472283 TTACTCCAAGCAACACCGTTA 57.528 42.857 0.00 0.00 0.00 3.18
305 753 3.596214 AGTATTACTCCAAGCAACACCG 58.404 45.455 0.00 0.00 0.00 4.94
306 754 4.565564 CGTAGTATTACTCCAAGCAACACC 59.434 45.833 0.00 0.00 0.00 4.16
368 816 1.128692 CTCCTCGCAACAAATTCGTCC 59.871 52.381 0.00 0.00 0.00 4.79
562 1021 0.322997 CTCTCGAGGGACCTGTCTGT 60.323 60.000 6.40 0.00 0.00 3.41
570 1029 0.894184 TGGTGTGACTCTCGAGGGAC 60.894 60.000 21.80 14.41 0.00 4.46
578 1037 2.761208 GGCTATGTACTGGTGTGACTCT 59.239 50.000 0.00 0.00 0.00 3.24
579 1038 2.479730 CGGCTATGTACTGGTGTGACTC 60.480 54.545 0.00 0.00 0.00 3.36
875 1334 9.944376 AACGGAAGATAATATAGGTAGTACGTA 57.056 33.333 5.24 5.24 0.00 3.57
883 1342 9.322769 AGAATACCAACGGAAGATAATATAGGT 57.677 33.333 0.00 0.00 0.00 3.08
884 1343 9.804758 GAGAATACCAACGGAAGATAATATAGG 57.195 37.037 0.00 0.00 0.00 2.57
887 1346 9.090103 TCAGAGAATACCAACGGAAGATAATAT 57.910 33.333 0.00 0.00 0.00 1.28
921 1380 2.740981 CTGCAGAATCCGCAAGATATCC 59.259 50.000 8.42 0.00 39.30 2.59
1138 1615 1.025812 CGTATCTCGTCCAGCTTCCT 58.974 55.000 0.00 0.00 34.52 3.36
1515 2007 1.965754 GAATGCTCTCCTCCTGCGGT 61.966 60.000 0.00 0.00 0.00 5.68
1542 2034 4.697756 TGCCCCGCGAAGAACCTG 62.698 66.667 8.23 0.00 0.00 4.00
1803 2295 1.302832 GGAGCCACACTGAACCTGG 60.303 63.158 0.00 0.00 0.00 4.45
1805 2297 1.757306 CAGGAGCCACACTGAACCT 59.243 57.895 0.00 0.00 36.86 3.50
1842 2334 0.519077 CTTTCGCACCCTTGAGCTTC 59.481 55.000 0.00 0.00 0.00 3.86
1856 2354 1.076332 GATCACCGGGTGAACTTTCG 58.924 55.000 31.78 2.05 45.96 3.46
1899 2397 0.440371 CGGAGCTTCTCACGCTTTTC 59.560 55.000 0.00 0.00 37.96 2.29
1905 2403 0.590230 GACGATCGGAGCTTCTCACG 60.590 60.000 20.98 0.00 31.08 4.35
1923 2421 0.321671 CAGAACTTTGAGGAGCCCGA 59.678 55.000 0.00 0.00 0.00 5.14
2067 2565 1.177401 GACTGATCTTGTTTGGCCCC 58.823 55.000 0.00 0.00 0.00 5.80
2103 2601 2.995939 TGCAAATCTAGACTTGCTGACG 59.004 45.455 31.90 1.84 46.49 4.35
2326 2824 3.717576 TCACATCAATCCTCTCACCTCT 58.282 45.455 0.00 0.00 0.00 3.69
2453 2951 1.845791 TGCTACCCATGTGACCATCAT 59.154 47.619 0.00 0.00 0.00 2.45
2466 2964 2.388232 CCGCGTGTTCTTGCTACCC 61.388 63.158 4.92 0.00 0.00 3.69
2471 2969 2.556287 CCTTCCGCGTGTTCTTGC 59.444 61.111 4.92 0.00 0.00 4.01
2520 3018 6.039717 ACTTTTTGCTTGTAGCTTCATCTTCA 59.960 34.615 0.00 0.00 42.97 3.02
2543 3041 6.763355 TCTTGTCTGCTCTTTTCTTCATACT 58.237 36.000 0.00 0.00 0.00 2.12
2561 3059 5.514279 CCTCAAAGTTGTTGTCATCTTGTC 58.486 41.667 0.00 0.00 34.88 3.18
2583 3081 3.793559 TCTCTTATTAACGCCTTGAGCC 58.206 45.455 0.00 0.00 38.78 4.70
2585 3083 6.360148 GTCGTATCTCTTATTAACGCCTTGAG 59.640 42.308 0.00 0.00 33.75 3.02
2649 3147 8.695456 TCTTCACATGTCTTAGTAATGCTATCA 58.305 33.333 0.00 0.00 0.00 2.15
2658 3156 6.403746 CGCTCTCTTCTTCACATGTCTTAGTA 60.404 42.308 0.00 0.00 0.00 1.82
2683 3181 6.477033 AGTGATTTCGCATAGTCATCTTGTAC 59.523 38.462 0.00 0.00 0.00 2.90
2686 3184 5.292834 ACAGTGATTTCGCATAGTCATCTTG 59.707 40.000 0.00 0.00 0.00 3.02
2694 3192 2.791560 CGAGGACAGTGATTTCGCATAG 59.208 50.000 0.00 0.00 0.00 2.23
2700 3198 3.430218 CACAGTTCGAGGACAGTGATTTC 59.570 47.826 6.89 0.00 38.78 2.17
2715 3213 2.627699 TCCCTTGGCATTTTCACAGTTC 59.372 45.455 0.00 0.00 0.00 3.01
2952 3450 0.460284 CCGCCTTATGAAGAGCACGT 60.460 55.000 0.00 0.00 0.00 4.49
3023 3521 6.494491 AGGACATGTTCTGAAATCCAAATGAA 59.506 34.615 5.64 0.00 0.00 2.57
3033 3531 5.534278 TGCAAATACAGGACATGTTCTGAAA 59.466 36.000 35.83 24.08 39.96 2.69
3081 3579 8.997621 ATGCTAAGAGTAAACGATGAACTAAA 57.002 30.769 0.00 0.00 0.00 1.85
3127 3632 4.336713 GCAGCATCCCTTAAGGTAAGAAAG 59.663 45.833 20.22 8.69 38.02 2.62
3138 3643 3.084536 TGATTGTTGCAGCATCCCTTA 57.915 42.857 3.36 0.00 0.00 2.69
3140 3645 1.822990 CTTGATTGTTGCAGCATCCCT 59.177 47.619 3.36 0.00 0.00 4.20
3141 3646 1.820519 TCTTGATTGTTGCAGCATCCC 59.179 47.619 3.36 0.00 0.00 3.85
3200 3705 9.551734 TCATCATGATTCTCACCATTAAACTAG 57.448 33.333 5.16 0.00 0.00 2.57
3202 3707 8.812513 TTCATCATGATTCTCACCATTAAACT 57.187 30.769 5.16 0.00 0.00 2.66
3209 3714 8.146412 CAGTATACTTCATCATGATTCTCACCA 58.854 37.037 5.16 0.00 0.00 4.17
3373 3881 6.781138 TGAAAGAATGTACAAACAGACACAC 58.219 36.000 0.00 0.00 39.49 3.82
3374 3882 6.993786 TGAAAGAATGTACAAACAGACACA 57.006 33.333 0.00 0.00 39.49 3.72
3375 3883 8.988934 TCTATGAAAGAATGTACAAACAGACAC 58.011 33.333 0.00 0.00 39.49 3.67
3376 3884 8.988934 GTCTATGAAAGAATGTACAAACAGACA 58.011 33.333 0.00 0.00 39.49 3.41
3377 3885 9.209175 AGTCTATGAAAGAATGTACAAACAGAC 57.791 33.333 0.00 5.31 39.49 3.51
3378 3886 9.778741 AAGTCTATGAAAGAATGTACAAACAGA 57.221 29.630 0.00 0.00 39.49 3.41
3442 3952 7.078011 AGCTTAAAGCATTTAGTAGAGCAAC 57.922 36.000 0.00 0.00 45.56 4.17
3520 4040 8.998277 TCTGTATCTGCCTTCTAAGTATACTT 57.002 34.615 21.35 21.35 39.85 2.24
3564 4084 5.551233 AGCTACATGGTAATATTGCACGAT 58.449 37.500 5.87 0.00 0.00 3.73
3566 4086 5.926542 ACTAGCTACATGGTAATATTGCACG 59.073 40.000 5.87 0.00 0.00 5.34
3778 4305 7.338710 CCATGGAAAAGAGTTATCTTACAGGA 58.661 38.462 5.56 0.00 45.25 3.86
3791 4318 5.526506 GGAAATCATCCCATGGAAAAGAG 57.473 43.478 15.22 0.00 43.00 2.85
3808 4335 3.418684 AACACGCAGTTCTAGGGAAAT 57.581 42.857 0.00 0.00 41.61 2.17
3848 4381 9.499479 TTCTTTTATAAATGGCTGCAAAATGAA 57.501 25.926 0.50 0.00 0.00 2.57
4048 4581 1.812571 CCAAGGCTGCGTAATTTGTCT 59.187 47.619 0.00 0.00 0.00 3.41
4097 4630 3.055819 TCCTGAGGAAATGCAGTCTGTAC 60.056 47.826 0.00 0.00 0.00 2.90
4231 4786 3.756963 AGGGAAATTTTACCGAAGACTGC 59.243 43.478 4.71 0.00 0.00 4.40
4361 4921 0.038892 CATGACCACACTGGCTTTGC 60.039 55.000 0.00 0.00 42.67 3.68
4367 4936 2.425143 ATAAGGCATGACCACACTGG 57.575 50.000 0.00 0.00 45.02 4.00
4392 4961 3.436704 ACAAATGATGTTGACCTACTGCG 59.563 43.478 0.00 0.00 40.06 5.18
4424 4993 3.553508 CCACAGCAAGAAATGGTCAAAGG 60.554 47.826 0.00 0.00 37.77 3.11
4452 5021 9.323963 CAAACAACAATTGAACAAAAGGTTTAC 57.676 29.630 13.59 0.00 40.63 2.01
4522 5091 1.865340 GACGACCAAAGTGACAACCTC 59.135 52.381 0.00 0.00 0.00 3.85
4581 5150 4.040445 GACAAGTTGTGGCTAAAAGCAA 57.960 40.909 14.57 0.00 44.75 3.91
4604 5173 7.907214 ATTAAACACATGGTACTCAGAGTTC 57.093 36.000 8.80 3.14 0.00 3.01
4663 5236 9.492973 AAAAACATGGTTTAGAGGAAATTGATG 57.507 29.630 9.62 0.00 0.00 3.07
4792 5369 3.495629 GCAAGGAGCCATCATCATAGACA 60.496 47.826 0.00 0.00 37.23 3.41
4806 5383 1.028130 GGGATAGCAAAGCAAGGAGC 58.972 55.000 0.00 0.00 46.19 4.70
4813 5390 2.481471 GGCACGGGGATAGCAAAGC 61.481 63.158 0.00 0.00 0.00 3.51
4814 5391 1.823899 GGGCACGGGGATAGCAAAG 60.824 63.158 0.00 0.00 0.00 2.77
4818 5395 2.741747 GTAGGGCACGGGGATAGC 59.258 66.667 0.00 0.00 0.00 2.97
4822 5399 4.642488 TGTGGTAGGGCACGGGGA 62.642 66.667 0.00 0.00 0.00 4.81
4827 5404 0.688487 TTACAGGTGTGGTAGGGCAC 59.312 55.000 0.00 0.00 35.07 5.01
4828 5405 0.981183 CTTACAGGTGTGGTAGGGCA 59.019 55.000 0.00 0.00 0.00 5.36
4829 5406 0.392595 GCTTACAGGTGTGGTAGGGC 60.393 60.000 0.00 0.00 0.00 5.19
4837 5414 0.250467 CACAGGCAGCTTACAGGTGT 60.250 55.000 4.95 0.00 44.96 4.16
4852 5429 5.591099 AGTCCAAACATTTAACTTGCACAG 58.409 37.500 0.00 0.00 0.00 3.66
4854 5431 6.806739 GGATAGTCCAAACATTTAACTTGCAC 59.193 38.462 0.00 0.00 36.28 4.57
4858 5437 9.408648 CCATAGGATAGTCCAAACATTTAACTT 57.591 33.333 0.00 0.00 39.61 2.66
4861 5440 9.627123 CTTCCATAGGATAGTCCAAACATTTAA 57.373 33.333 0.00 0.00 39.61 1.52
4867 5446 6.261158 GCTTTCTTCCATAGGATAGTCCAAAC 59.739 42.308 0.00 0.00 39.61 2.93
4901 5480 4.099573 GCTAGGCCACAAGAAGTAGTATCA 59.900 45.833 5.01 0.00 0.00 2.15
4902 5481 4.342665 AGCTAGGCCACAAGAAGTAGTATC 59.657 45.833 5.01 0.00 0.00 2.24
4927 5506 1.942657 AGTATAATTGGTGCTGCTGCG 59.057 47.619 11.21 0.00 43.34 5.18
4930 5509 2.509548 TGGGAGTATAATTGGTGCTGCT 59.490 45.455 0.00 0.00 0.00 4.24
4972 5556 9.561069 GGATATATCTCAAGTAAAGGAAAGCAA 57.439 33.333 12.42 0.00 0.00 3.91
4974 5558 7.608376 GGGGATATATCTCAAGTAAAGGAAAGC 59.392 40.741 14.59 0.00 0.00 3.51
4976 5560 8.814448 AGGGGATATATCTCAAGTAAAGGAAA 57.186 34.615 14.59 0.00 0.00 3.13
4998 5582 3.386726 TCGGCCCGAATATATCATTAGGG 59.613 47.826 1.70 9.97 43.93 3.53
5000 5585 4.099573 ACCTCGGCCCGAATATATCATTAG 59.900 45.833 7.50 0.00 34.74 1.73
5002 5587 2.838202 ACCTCGGCCCGAATATATCATT 59.162 45.455 7.50 0.00 34.74 2.57
5006 5591 1.755380 GCTACCTCGGCCCGAATATAT 59.245 52.381 7.50 0.00 34.74 0.86
5018 5603 1.135333 GAGGAACTTGGAGCTACCTCG 59.865 57.143 0.00 0.00 41.55 4.63
5025 5610 3.127721 GCACAATAAGAGGAACTTGGAGC 59.872 47.826 0.00 0.00 41.55 4.70
5026 5611 4.326826 TGCACAATAAGAGGAACTTGGAG 58.673 43.478 0.00 0.00 41.55 3.86
5027 5612 4.365514 TGCACAATAAGAGGAACTTGGA 57.634 40.909 0.00 0.00 41.55 3.53
5028 5613 4.096984 GGATGCACAATAAGAGGAACTTGG 59.903 45.833 0.00 0.00 41.55 3.61
5029 5614 4.701651 TGGATGCACAATAAGAGGAACTTG 59.298 41.667 0.00 0.00 41.55 3.16
5030 5615 4.702131 GTGGATGCACAATAAGAGGAACTT 59.298 41.667 13.07 0.00 41.55 2.66
5031 5616 4.263462 TGTGGATGCACAATAAGAGGAACT 60.263 41.667 18.56 0.00 34.25 3.01
5032 5617 4.009675 TGTGGATGCACAATAAGAGGAAC 58.990 43.478 18.56 0.00 31.35 3.62
5033 5618 4.009675 GTGTGGATGCACAATAAGAGGAA 58.990 43.478 22.48 0.00 39.07 3.36
5034 5619 3.008923 TGTGTGGATGCACAATAAGAGGA 59.991 43.478 22.48 0.00 45.17 3.71
5035 5620 3.346315 TGTGTGGATGCACAATAAGAGG 58.654 45.455 22.48 0.00 45.17 3.69
5044 5629 2.159198 GGAATGGAATGTGTGGATGCAC 60.159 50.000 10.90 10.90 39.65 4.57
5045 5630 2.101783 GGAATGGAATGTGTGGATGCA 58.898 47.619 0.00 0.00 0.00 3.96
5046 5631 2.381911 AGGAATGGAATGTGTGGATGC 58.618 47.619 0.00 0.00 0.00 3.91
5047 5632 5.163519 GGTAAAGGAATGGAATGTGTGGATG 60.164 44.000 0.00 0.00 0.00 3.51
5048 5633 4.956075 GGTAAAGGAATGGAATGTGTGGAT 59.044 41.667 0.00 0.00 0.00 3.41
5049 5634 4.044065 AGGTAAAGGAATGGAATGTGTGGA 59.956 41.667 0.00 0.00 0.00 4.02
5050 5635 4.158394 CAGGTAAAGGAATGGAATGTGTGG 59.842 45.833 0.00 0.00 0.00 4.17
5051 5636 5.009631 TCAGGTAAAGGAATGGAATGTGTG 58.990 41.667 0.00 0.00 0.00 3.82
5052 5637 5.255397 TCAGGTAAAGGAATGGAATGTGT 57.745 39.130 0.00 0.00 0.00 3.72
5053 5638 6.015519 TGTTTCAGGTAAAGGAATGGAATGTG 60.016 38.462 0.00 0.00 0.00 3.21
5054 5639 6.074648 TGTTTCAGGTAAAGGAATGGAATGT 58.925 36.000 0.00 0.00 0.00 2.71
5055 5640 6.588719 TGTTTCAGGTAAAGGAATGGAATG 57.411 37.500 0.00 0.00 0.00 2.67
5056 5641 6.381133 GGATGTTTCAGGTAAAGGAATGGAAT 59.619 38.462 0.00 0.00 0.00 3.01
5057 5642 5.714806 GGATGTTTCAGGTAAAGGAATGGAA 59.285 40.000 0.00 0.00 0.00 3.53
5058 5643 5.222233 TGGATGTTTCAGGTAAAGGAATGGA 60.222 40.000 0.00 0.00 0.00 3.41
5059 5644 5.016173 TGGATGTTTCAGGTAAAGGAATGG 58.984 41.667 0.00 0.00 0.00 3.16
5060 5645 6.183360 GGATGGATGTTTCAGGTAAAGGAATG 60.183 42.308 0.00 0.00 0.00 2.67
5061 5646 5.893824 GGATGGATGTTTCAGGTAAAGGAAT 59.106 40.000 0.00 0.00 0.00 3.01
5062 5647 5.222233 TGGATGGATGTTTCAGGTAAAGGAA 60.222 40.000 0.00 0.00 0.00 3.36
5063 5648 4.290985 TGGATGGATGTTTCAGGTAAAGGA 59.709 41.667 0.00 0.00 0.00 3.36
5064 5649 4.599041 TGGATGGATGTTTCAGGTAAAGG 58.401 43.478 0.00 0.00 0.00 3.11
5065 5650 5.500234 TCTGGATGGATGTTTCAGGTAAAG 58.500 41.667 0.00 0.00 0.00 1.85
5066 5651 5.512942 TCTGGATGGATGTTTCAGGTAAA 57.487 39.130 0.00 0.00 0.00 2.01
5067 5652 5.715439 ATCTGGATGGATGTTTCAGGTAA 57.285 39.130 0.00 0.00 0.00 2.85
5068 5653 8.685257 ATATATCTGGATGGATGTTTCAGGTA 57.315 34.615 0.00 0.00 0.00 3.08
5069 5654 5.919348 ATATCTGGATGGATGTTTCAGGT 57.081 39.130 0.00 0.00 0.00 4.00
5070 5655 7.859540 AGATATATCTGGATGGATGTTTCAGG 58.140 38.462 14.60 0.00 35.42 3.86
5071 5656 7.986320 GGAGATATATCTGGATGGATGTTTCAG 59.014 40.741 20.05 0.00 37.25 3.02
5072 5657 7.681598 AGGAGATATATCTGGATGGATGTTTCA 59.318 37.037 20.05 0.00 37.25 2.69
5073 5658 7.986320 CAGGAGATATATCTGGATGGATGTTTC 59.014 40.741 20.05 1.08 37.25 2.78
5074 5659 7.681598 TCAGGAGATATATCTGGATGGATGTTT 59.318 37.037 20.05 0.00 37.25 2.83
5075 5660 7.194761 TCAGGAGATATATCTGGATGGATGTT 58.805 38.462 20.05 0.00 37.25 2.71
5076 5661 6.750009 TCAGGAGATATATCTGGATGGATGT 58.250 40.000 20.05 0.00 37.25 3.06
5077 5662 7.509659 TGATCAGGAGATATATCTGGATGGATG 59.490 40.741 20.05 7.71 37.25 3.51
5078 5663 7.602868 TGATCAGGAGATATATCTGGATGGAT 58.397 38.462 20.05 13.73 37.25 3.41
5079 5664 6.989894 TGATCAGGAGATATATCTGGATGGA 58.010 40.000 20.05 10.02 37.25 3.41
5080 5665 7.859026 ATGATCAGGAGATATATCTGGATGG 57.141 40.000 20.05 5.28 37.25 3.51
5088 5673 8.976353 GCCCGAATATATGATCAGGAGATATAT 58.024 37.037 0.09 0.99 33.72 0.86
5089 5674 7.950124 TGCCCGAATATATGATCAGGAGATATA 59.050 37.037 0.09 0.00 33.72 0.86
5090 5675 6.784473 TGCCCGAATATATGATCAGGAGATAT 59.216 38.462 0.09 0.00 33.72 1.63
5091 5676 6.136155 TGCCCGAATATATGATCAGGAGATA 58.864 40.000 0.09 0.00 33.72 1.98
5092 5677 4.964897 TGCCCGAATATATGATCAGGAGAT 59.035 41.667 0.09 0.00 37.13 2.75
5093 5678 4.352893 TGCCCGAATATATGATCAGGAGA 58.647 43.478 0.09 0.00 0.00 3.71
5094 5679 4.743057 TGCCCGAATATATGATCAGGAG 57.257 45.455 0.09 0.00 0.00 3.69
5095 5680 4.716287 TCATGCCCGAATATATGATCAGGA 59.284 41.667 0.09 0.00 0.00 3.86
5096 5681 4.813161 GTCATGCCCGAATATATGATCAGG 59.187 45.833 0.09 0.00 32.76 3.86
5097 5682 4.505556 CGTCATGCCCGAATATATGATCAG 59.494 45.833 0.09 0.00 32.76 2.90
5098 5683 4.432712 CGTCATGCCCGAATATATGATCA 58.567 43.478 0.00 0.00 32.76 2.92
5099 5684 3.246226 GCGTCATGCCCGAATATATGATC 59.754 47.826 8.53 0.00 37.76 2.92
5100 5685 3.198068 GCGTCATGCCCGAATATATGAT 58.802 45.455 8.53 0.00 37.76 2.45
5101 5686 2.028567 TGCGTCATGCCCGAATATATGA 60.029 45.455 8.53 0.00 45.60 2.15
5102 5687 2.345876 TGCGTCATGCCCGAATATATG 58.654 47.619 8.53 0.00 45.60 1.78
5103 5688 2.621338 CTGCGTCATGCCCGAATATAT 58.379 47.619 8.53 0.00 45.60 0.86
5104 5689 1.939381 GCTGCGTCATGCCCGAATATA 60.939 52.381 8.53 0.00 45.60 0.86
5105 5690 1.230635 GCTGCGTCATGCCCGAATAT 61.231 55.000 8.53 0.00 45.60 1.28
5106 5691 1.887242 GCTGCGTCATGCCCGAATA 60.887 57.895 8.53 0.00 45.60 1.75
5107 5692 3.204827 GCTGCGTCATGCCCGAAT 61.205 61.111 8.53 0.00 45.60 3.34
5108 5693 4.393155 AGCTGCGTCATGCCCGAA 62.393 61.111 8.53 0.00 45.60 4.30
5109 5694 4.819761 GAGCTGCGTCATGCCCGA 62.820 66.667 8.53 0.00 45.60 5.14
5111 5696 4.783621 TGGAGCTGCGTCATGCCC 62.784 66.667 0.00 0.00 45.60 5.36
5112 5697 2.747460 TTGGAGCTGCGTCATGCC 60.747 61.111 0.00 0.00 45.60 4.40
5113 5698 2.789917 CTTGGAGCTGCGTCATGC 59.210 61.111 0.00 0.00 46.70 4.06
5114 5699 2.789917 GCTTGGAGCTGCGTCATG 59.210 61.111 0.00 0.81 38.45 3.07
5131 5717 1.972872 AAACAGCACAACAGGAGGAG 58.027 50.000 0.00 0.00 0.00 3.69
5145 5731 3.677121 CAGTGGACGAGATGAGAAAACAG 59.323 47.826 0.00 0.00 0.00 3.16
5151 5737 1.478631 ATGCAGTGGACGAGATGAGA 58.521 50.000 0.00 0.00 0.00 3.27
5152 5738 3.243670 ACATATGCAGTGGACGAGATGAG 60.244 47.826 1.58 0.00 0.00 2.90
5153 5739 2.695147 ACATATGCAGTGGACGAGATGA 59.305 45.455 1.58 0.00 0.00 2.92
5154 5740 3.103447 ACATATGCAGTGGACGAGATG 57.897 47.619 1.58 0.00 0.00 2.90
5155 5741 4.281941 ACATACATATGCAGTGGACGAGAT 59.718 41.667 1.58 0.00 37.19 2.75
5156 5742 3.636764 ACATACATATGCAGTGGACGAGA 59.363 43.478 1.58 0.00 37.19 4.04
5158 5744 4.119136 CAACATACATATGCAGTGGACGA 58.881 43.478 1.58 0.00 37.19 4.20
5160 5746 4.875536 TGACAACATACATATGCAGTGGAC 59.124 41.667 1.58 0.00 37.19 4.02
5163 5749 5.684184 GCATTGACAACATACATATGCAGTG 59.316 40.000 1.58 1.94 37.45 3.66
5170 5756 7.412891 CGAAGAACTGCATTGACAACATACATA 60.413 37.037 0.00 0.00 0.00 2.29
5171 5757 6.579666 AAGAACTGCATTGACAACATACAT 57.420 33.333 0.00 0.00 0.00 2.29
5172 5758 5.334028 CGAAGAACTGCATTGACAACATACA 60.334 40.000 0.00 0.00 0.00 2.29
5173 5759 5.082059 CGAAGAACTGCATTGACAACATAC 58.918 41.667 0.00 0.00 0.00 2.39
5180 5766 1.126846 CCGACGAAGAACTGCATTGAC 59.873 52.381 0.00 0.00 0.00 3.18
5182 5768 0.179215 GCCGACGAAGAACTGCATTG 60.179 55.000 0.00 0.00 0.00 2.82
5183 5769 0.602638 TGCCGACGAAGAACTGCATT 60.603 50.000 0.00 0.00 0.00 3.56
5185 5771 0.245266 TATGCCGACGAAGAACTGCA 59.755 50.000 0.00 0.00 33.99 4.41
5194 5780 1.037493 AATGCTACCTATGCCGACGA 58.963 50.000 0.00 0.00 0.00 4.20
5196 5782 2.526304 TCAATGCTACCTATGCCGAC 57.474 50.000 0.00 0.00 0.00 4.79
5215 5803 5.751586 ACCCCACAAAGATATCGTACATTT 58.248 37.500 0.00 0.00 0.00 2.32
5223 5811 7.255139 GCTGTATTACAACCCCACAAAGATATC 60.255 40.741 0.00 0.00 0.00 1.63
5225 5813 5.883673 GCTGTATTACAACCCCACAAAGATA 59.116 40.000 0.00 0.00 0.00 1.98
5226 5814 4.705023 GCTGTATTACAACCCCACAAAGAT 59.295 41.667 0.00 0.00 0.00 2.40
5227 5815 4.076394 GCTGTATTACAACCCCACAAAGA 58.924 43.478 0.00 0.00 0.00 2.52
5228 5816 3.119990 CGCTGTATTACAACCCCACAAAG 60.120 47.826 0.00 0.00 0.00 2.77
5258 5852 3.146847 GTTGGTTCCACAAGGTAGAAGG 58.853 50.000 0.00 0.00 35.89 3.46
5259 5853 3.815401 CAGTTGGTTCCACAAGGTAGAAG 59.185 47.826 0.00 0.00 35.89 2.85
5271 5865 7.824779 AGAGAGTTGATATTTACAGTTGGTTCC 59.175 37.037 0.00 0.00 0.00 3.62
5290 5884 1.757306 CAGGTGGTGGCAGAGAGTT 59.243 57.895 0.00 0.00 0.00 3.01
5292 5886 2.046507 GCAGGTGGTGGCAGAGAG 60.047 66.667 0.00 0.00 0.00 3.20
5293 5887 2.527624 AGCAGGTGGTGGCAGAGA 60.528 61.111 0.00 0.00 0.00 3.10
5294 5888 2.359602 CAGCAGGTGGTGGCAGAG 60.360 66.667 1.04 0.00 39.67 3.35
5309 5903 4.666253 CACCAGCCACCCACCCAG 62.666 72.222 0.00 0.00 0.00 4.45
5311 5905 4.974721 CACACCAGCCACCCACCC 62.975 72.222 0.00 0.00 0.00 4.61
5312 5906 4.204028 ACACACCAGCCACCCACC 62.204 66.667 0.00 0.00 0.00 4.61
5313 5907 2.906897 CACACACCAGCCACCCAC 60.907 66.667 0.00 0.00 0.00 4.61
5314 5908 4.892965 GCACACACCAGCCACCCA 62.893 66.667 0.00 0.00 0.00 4.51
5315 5909 4.586235 AGCACACACCAGCCACCC 62.586 66.667 0.00 0.00 0.00 4.61
5316 5910 2.075426 GAAAGCACACACCAGCCACC 62.075 60.000 0.00 0.00 0.00 4.61
5317 5911 1.103398 AGAAAGCACACACCAGCCAC 61.103 55.000 0.00 0.00 0.00 5.01
5318 5912 1.102809 CAGAAAGCACACACCAGCCA 61.103 55.000 0.00 0.00 0.00 4.75
5319 5913 0.819259 TCAGAAAGCACACACCAGCC 60.819 55.000 0.00 0.00 0.00 4.85
5320 5914 1.024271 TTCAGAAAGCACACACCAGC 58.976 50.000 0.00 0.00 0.00 4.85
5321 5915 3.635331 CATTTCAGAAAGCACACACCAG 58.365 45.455 1.28 0.00 0.00 4.00
5322 5916 2.223782 GCATTTCAGAAAGCACACACCA 60.224 45.455 1.28 0.00 0.00 4.17
5323 5917 2.223782 TGCATTTCAGAAAGCACACACC 60.224 45.455 13.07 0.00 31.05 4.16
5324 5918 3.082698 TGCATTTCAGAAAGCACACAC 57.917 42.857 13.07 0.00 31.05 3.82
5325 5919 3.797451 TTGCATTTCAGAAAGCACACA 57.203 38.095 15.48 3.96 36.62 3.72
5326 5920 3.245990 GGTTTGCATTTCAGAAAGCACAC 59.754 43.478 18.62 18.62 37.05 3.82
5327 5921 3.132646 AGGTTTGCATTTCAGAAAGCACA 59.867 39.130 15.48 9.50 36.62 4.57
5328 5922 3.492011 CAGGTTTGCATTTCAGAAAGCAC 59.508 43.478 15.48 8.46 36.62 4.40
5329 5923 3.493002 CCAGGTTTGCATTTCAGAAAGCA 60.493 43.478 13.07 13.07 34.79 3.91
5330 5924 3.062042 CCAGGTTTGCATTTCAGAAAGC 58.938 45.455 1.28 6.14 0.00 3.51
5331 5925 4.326504 ACCAGGTTTGCATTTCAGAAAG 57.673 40.909 1.28 0.00 0.00 2.62
5332 5926 4.751767 AACCAGGTTTGCATTTCAGAAA 57.248 36.364 0.00 0.00 0.00 2.52
5333 5927 4.440880 CAAACCAGGTTTGCATTTCAGAA 58.559 39.130 28.39 0.00 44.59 3.02
5366 6001 0.680921 ATTGTGATTCCCGGGCACAG 60.681 55.000 25.35 0.54 42.70 3.66
5375 6010 7.121168 TCCAAACTGACAGATAATTGTGATTCC 59.879 37.037 10.08 0.00 0.00 3.01
5428 6073 3.259374 AGAGTTGCAGCAGTATGTACACT 59.741 43.478 2.55 0.00 39.31 3.55
5476 6125 0.255318 AGGATTGGCTGCTCTTCAGG 59.745 55.000 0.00 0.00 43.06 3.86
5498 6147 1.196808 CAACATTGACCGGGAGAAACG 59.803 52.381 6.32 0.00 0.00 3.60
5537 6193 0.111061 TGTTCACTTGAGCTGCCCAT 59.889 50.000 0.00 0.00 0.00 4.00
5538 6194 0.819259 GTGTTCACTTGAGCTGCCCA 60.819 55.000 0.00 0.00 0.00 5.36
5539 6195 0.819259 TGTGTTCACTTGAGCTGCCC 60.819 55.000 0.00 0.00 0.00 5.36
5542 6198 1.945394 AGCTTGTGTTCACTTGAGCTG 59.055 47.619 19.34 0.00 38.88 4.24
5547 6203 0.378257 ACGCAGCTTGTGTTCACTTG 59.622 50.000 4.59 0.00 37.97 3.16
5555 6211 2.046313 GATTCAAACACGCAGCTTGTG 58.954 47.619 5.10 13.06 42.99 3.33
5565 6221 4.083855 TGCTGACTCAATCGATTCAAACAC 60.084 41.667 7.92 0.00 31.15 3.32
5589 6245 9.788960 GCTTGACTCGGATTAAAAATAAAGATT 57.211 29.630 0.00 0.00 0.00 2.40
5596 6253 6.183309 GTCAGCTTGACTCGGATTAAAAAT 57.817 37.500 8.50 0.00 43.73 1.82
5661 6318 3.360867 AGACACCTGAAGATCGACTGAT 58.639 45.455 0.00 0.00 37.60 2.90
5662 6319 2.796557 AGACACCTGAAGATCGACTGA 58.203 47.619 0.00 0.00 0.00 3.41
5663 6320 3.249091 CAAGACACCTGAAGATCGACTG 58.751 50.000 0.00 0.00 0.00 3.51
5664 6321 2.353208 GCAAGACACCTGAAGATCGACT 60.353 50.000 0.00 0.00 0.00 4.18
5665 6322 1.996191 GCAAGACACCTGAAGATCGAC 59.004 52.381 0.00 0.00 0.00 4.20
5677 6339 1.003718 AGCCCGGTAAGCAAGACAC 60.004 57.895 0.00 0.00 0.00 3.67
5701 6363 8.596271 TCCAAAATAGATGACGCGATTAAATA 57.404 30.769 15.93 0.00 0.00 1.40
5706 6368 4.260212 CGTTCCAAAATAGATGACGCGATT 60.260 41.667 15.93 0.00 0.00 3.34
5712 6374 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5713 6375 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5715 6377 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5716 6378 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5717 6379 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5718 6380 5.045432 ACATTACTCCCTCCGTTCCAAAATA 60.045 40.000 0.00 0.00 0.00 1.40
5719 6381 4.263771 ACATTACTCCCTCCGTTCCAAAAT 60.264 41.667 0.00 0.00 0.00 1.82
5723 6385 1.946984 ACATTACTCCCTCCGTTCCA 58.053 50.000 0.00 0.00 0.00 3.53
5724 6386 3.345508 AAACATTACTCCCTCCGTTCC 57.654 47.619 0.00 0.00 0.00 3.62
5725 6387 6.036844 GTGAATAAACATTACTCCCTCCGTTC 59.963 42.308 0.00 0.00 0.00 3.95
5726 6388 5.878669 GTGAATAAACATTACTCCCTCCGTT 59.121 40.000 0.00 0.00 0.00 4.44
5727 6389 5.425630 GTGAATAAACATTACTCCCTCCGT 58.574 41.667 0.00 0.00 0.00 4.69
5728 6390 4.814771 GGTGAATAAACATTACTCCCTCCG 59.185 45.833 0.00 0.00 0.00 4.63
5729 6391 4.814771 CGGTGAATAAACATTACTCCCTCC 59.185 45.833 0.00 0.00 0.00 4.30
5730 6392 4.814771 CCGGTGAATAAACATTACTCCCTC 59.185 45.833 0.00 0.00 0.00 4.30
5731 6393 4.472108 TCCGGTGAATAAACATTACTCCCT 59.528 41.667 0.00 0.00 0.00 4.20
5732 6394 4.773013 TCCGGTGAATAAACATTACTCCC 58.227 43.478 0.00 0.00 0.00 4.30
5733 6395 5.667466 TCTCCGGTGAATAAACATTACTCC 58.333 41.667 3.14 0.00 0.00 3.85
5734 6396 5.753921 CCTCTCCGGTGAATAAACATTACTC 59.246 44.000 7.75 0.00 0.00 2.59
5735 6397 5.424252 TCCTCTCCGGTGAATAAACATTACT 59.576 40.000 7.75 0.00 0.00 2.24
5736 6398 5.667466 TCCTCTCCGGTGAATAAACATTAC 58.333 41.667 7.75 0.00 0.00 1.89
5738 6400 4.837093 TCCTCTCCGGTGAATAAACATT 57.163 40.909 7.75 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.