Multiple sequence alignment - TraesCS1D01G434100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G434100 chr1D 100.000 5986 0 0 2071 8056 483452602 483458587 0.000000e+00 11055.0
1 TraesCS1D01G434100 chr1D 100.000 1933 0 0 1 1933 483450532 483452464 0.000000e+00 3570.0
2 TraesCS1D01G434100 chr1D 90.698 86 5 2 7583 7668 493221606 493221688 2.380000e-20 111.0
3 TraesCS1D01G434100 chr1D 96.970 33 0 1 7458 7490 483467064 483467095 4.000000e-03 54.7
4 TraesCS1D01G434100 chr1B 93.983 2493 105 20 3493 5960 673638687 673641159 0.000000e+00 3731.0
5 TraesCS1D01G434100 chr1B 92.977 1666 89 17 6089 7745 673641178 673642824 0.000000e+00 2403.0
6 TraesCS1D01G434100 chr1B 85.932 1379 122 36 2071 3419 673637191 673638527 0.000000e+00 1406.0
7 TraesCS1D01G434100 chr1B 82.799 686 86 11 726 1400 673635590 673636254 1.170000e-162 584.0
8 TraesCS1D01G434100 chr1B 98.344 302 3 2 7756 8056 673642903 673643203 5.540000e-146 529.0
9 TraesCS1D01G434100 chr1B 86.333 439 27 19 1506 1933 673636743 673637159 1.590000e-121 448.0
10 TraesCS1D01G434100 chr1B 88.474 321 33 2 44 360 673635104 673635424 1.270000e-102 385.0
11 TraesCS1D01G434100 chr1B 77.798 563 95 18 753 1289 640809974 640810532 3.630000e-83 320.0
12 TraesCS1D01G434100 chr1B 81.662 349 50 8 733 1071 185479316 185478972 2.210000e-70 278.0
13 TraesCS1D01G434100 chr1B 85.590 229 27 4 1106 1330 673636302 673636528 1.350000e-57 235.0
14 TraesCS1D01G434100 chr1B 83.704 135 8 6 323 443 673635314 673635448 1.840000e-21 115.0
15 TraesCS1D01G434100 chr1B 100.000 30 0 0 9 38 673636225 673636254 1.000000e-03 56.5
16 TraesCS1D01G434100 chr1B 96.970 33 0 1 7458 7490 673700212 673700243 4.000000e-03 54.7
17 TraesCS1D01G434100 chr1A 89.602 1558 84 35 5997 7493 580188156 580189696 0.000000e+00 1908.0
18 TraesCS1D01G434100 chr1A 93.801 984 57 3 4981 5960 580187166 580188149 0.000000e+00 1476.0
19 TraesCS1D01G434100 chr1A 91.895 876 60 7 4075 4945 580186290 580187159 0.000000e+00 1214.0
20 TraesCS1D01G434100 chr1A 82.101 1285 107 61 2071 3302 580184343 580185557 0.000000e+00 985.0
21 TraesCS1D01G434100 chr1A 88.306 667 62 7 58 710 580182433 580183097 0.000000e+00 785.0
22 TraesCS1D01G434100 chr1A 87.872 437 45 3 732 1165 580183089 580183520 2.590000e-139 507.0
23 TraesCS1D01G434100 chr1A 85.681 433 16 21 1521 1933 580183899 580184305 1.620000e-111 414.0
24 TraesCS1D01G434100 chr1A 83.438 477 48 19 3588 4043 580185820 580186286 1.620000e-111 414.0
25 TraesCS1D01G434100 chr1A 86.170 188 23 2 426 611 580166590 580166776 4.930000e-47 200.0
26 TraesCS1D01G434100 chr1A 85.593 118 14 2 3328 3443 580185554 580185670 3.950000e-23 121.0
27 TraesCS1D01G434100 chr1A 100.000 28 0 0 253 280 580182771 580182798 1.500000e-02 52.8
28 TraesCS1D01G434100 chr5D 81.678 584 78 16 732 1289 505350543 505349963 7.370000e-125 459.0
29 TraesCS1D01G434100 chr5D 83.333 240 24 8 3558 3786 214062817 214062583 2.950000e-49 207.0
30 TraesCS1D01G434100 chr4A 81.216 559 70 17 744 1287 565324915 565325453 1.250000e-112 418.0
31 TraesCS1D01G434100 chr4A 85.393 89 12 1 7579 7666 734883288 734883200 3.100000e-14 91.6
32 TraesCS1D01G434100 chr7A 80.812 542 82 12 753 1289 24754722 24755246 9.740000e-109 405.0
33 TraesCS1D01G434100 chr7A 77.193 570 91 28 732 1285 649791406 649790860 6.110000e-76 296.0
34 TraesCS1D01G434100 chr7A 91.860 86 4 1 3480 3565 273018221 273018139 5.110000e-22 117.0
35 TraesCS1D01G434100 chr7D 79.961 514 75 13 753 1259 93687627 93687135 3.580000e-93 353.0
36 TraesCS1D01G434100 chr7D 78.745 494 82 17 799 1283 18869116 18869595 7.850000e-80 309.0
37 TraesCS1D01G434100 chr6D 78.826 562 82 23 753 1287 293799744 293800295 2.150000e-90 344.0
38 TraesCS1D01G434100 chrUn 78.755 546 89 17 767 1289 96936942 96937483 2.780000e-89 340.0
39 TraesCS1D01G434100 chr3B 78.085 543 92 17 753 1272 537302014 537302552 1.300000e-82 318.0
40 TraesCS1D01G434100 chr2B 76.819 591 96 19 732 1289 183956713 183957295 2.200000e-75 294.0
41 TraesCS1D01G434100 chr3D 76.573 572 91 27 732 1272 418372817 418373376 2.860000e-69 274.0
42 TraesCS1D01G434100 chr4B 87.778 90 8 3 7579 7666 28174253 28174341 1.430000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G434100 chr1D 483450532 483458587 8055 False 7312.50 11055 100.0000 1 8056 2 chr1D.!!$F3 8055
1 TraesCS1D01G434100 chr1B 673635104 673643203 8099 False 989.25 3731 89.8136 9 8056 10 chr1B.!!$F3 8047
2 TraesCS1D01G434100 chr1B 640809974 640810532 558 False 320.00 320 77.7980 753 1289 1 chr1B.!!$F1 536
3 TraesCS1D01G434100 chr1A 580182433 580189696 7263 False 787.68 1908 88.8289 58 7493 10 chr1A.!!$F2 7435
4 TraesCS1D01G434100 chr5D 505349963 505350543 580 True 459.00 459 81.6780 732 1289 1 chr5D.!!$R2 557
5 TraesCS1D01G434100 chr4A 565324915 565325453 538 False 418.00 418 81.2160 744 1287 1 chr4A.!!$F1 543
6 TraesCS1D01G434100 chr7A 24754722 24755246 524 False 405.00 405 80.8120 753 1289 1 chr7A.!!$F1 536
7 TraesCS1D01G434100 chr7A 649790860 649791406 546 True 296.00 296 77.1930 732 1285 1 chr7A.!!$R2 553
8 TraesCS1D01G434100 chr6D 293799744 293800295 551 False 344.00 344 78.8260 753 1287 1 chr6D.!!$F1 534
9 TraesCS1D01G434100 chrUn 96936942 96937483 541 False 340.00 340 78.7550 767 1289 1 chrUn.!!$F1 522
10 TraesCS1D01G434100 chr3B 537302014 537302552 538 False 318.00 318 78.0850 753 1272 1 chr3B.!!$F1 519
11 TraesCS1D01G434100 chr2B 183956713 183957295 582 False 294.00 294 76.8190 732 1289 1 chr2B.!!$F1 557
12 TraesCS1D01G434100 chr3D 418372817 418373376 559 False 274.00 274 76.5730 732 1272 1 chr3D.!!$F1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
82 83 0.038166 TTTGAAATCTCAGGCGGCCT 59.962 50.0 17.69 17.69 31.69 5.19 F
905 1009 0.106116 ACCTCTCCGGATCCTGTACC 60.106 60.0 3.57 0.00 36.31 3.34 F
1492 2100 0.526954 TCGGTAAAATCTCGAGCGGC 60.527 55.0 7.81 0.00 34.95 6.53 F
2549 3313 0.104144 TTCTTGGACCTCCTTCCCCA 60.104 55.0 0.00 0.00 34.33 4.96 F
2658 3439 0.180171 CCACCAGAACCTCACACACA 59.820 55.0 0.00 0.00 0.00 3.72 F
4224 5223 0.307760 GCACTGTCGGTTCTTTGGTG 59.692 55.0 0.00 0.00 0.00 4.17 F
4733 5732 0.249073 CAGGTACTCATCGCCTTCGG 60.249 60.0 0.00 0.00 34.60 4.30 F
5415 6423 0.417841 AGGAGGTTTGGGAGGAGCTA 59.582 55.0 0.00 0.00 0.00 3.32 F
6731 7758 0.803740 GCTACGTGGAGAAGTCGAGT 59.196 55.0 1.81 0.00 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1687 2412 0.251742 AATGATGGTGGTGGTGGTGG 60.252 55.0 0.00 0.0 0.00 4.61 R
2240 2990 0.321475 ACCAAGAAGAGCAGAGCAGC 60.321 55.0 0.00 0.0 0.00 5.25 R
3307 4144 0.030101 CCACTCGCTCTAGCAGTAGC 59.970 60.0 2.44 0.0 42.21 3.58 R
4317 5316 0.098376 GAAGAGCTGAAGGCATTGCG 59.902 55.0 1.91 0.0 44.79 4.85 R
4462 5461 5.743872 CGTCAACATCTCGAACTCATTGATA 59.256 40.0 0.00 0.0 0.00 2.15 R
5505 6513 0.174389 GGATCGAGTCAGCAAGCTCA 59.826 55.0 0.00 0.0 0.00 4.26 R
5706 6714 0.533491 CCGTGGGGTCGATGTTAGAA 59.467 55.0 0.00 0.0 0.00 2.10 R
7016 8043 0.966179 TGAAGTAGCTCTTGGCGACA 59.034 50.0 0.00 0.0 46.58 4.35 R
7561 8644 0.463295 ATTGCTGCTCATGTCCTCCG 60.463 55.0 0.00 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.908152 ATCGATCGAAGATATACACAACATTAA 57.092 29.630 23.50 0.00 45.12 1.40
27 28 9.908152 TCGATCGAAGATATACACAACATTAAT 57.092 29.630 16.99 0.00 45.12 1.40
82 83 0.038166 TTTGAAATCTCAGGCGGCCT 59.962 50.000 17.69 17.69 31.69 5.19
170 171 4.386951 TGTACGGCCGCAGCACAT 62.387 61.111 28.58 6.16 42.56 3.21
182 183 1.696988 CAGCACATAAACAAACGGGC 58.303 50.000 0.00 0.00 0.00 6.13
260 261 2.904434 AGCCCGACCCCTTTATACATAG 59.096 50.000 0.00 0.00 0.00 2.23
261 262 2.901839 GCCCGACCCCTTTATACATAGA 59.098 50.000 0.00 0.00 0.00 1.98
262 263 3.325716 GCCCGACCCCTTTATACATAGAA 59.674 47.826 0.00 0.00 0.00 2.10
263 264 4.562963 GCCCGACCCCTTTATACATAGAAG 60.563 50.000 0.00 0.00 0.00 2.85
264 265 4.836736 CCCGACCCCTTTATACATAGAAGA 59.163 45.833 0.00 0.00 0.00 2.87
265 266 5.484290 CCCGACCCCTTTATACATAGAAGAT 59.516 44.000 0.00 0.00 0.00 2.40
266 267 6.666546 CCCGACCCCTTTATACATAGAAGATA 59.333 42.308 0.00 0.00 0.00 1.98
267 268 7.344871 CCCGACCCCTTTATACATAGAAGATAT 59.655 40.741 0.00 0.00 0.00 1.63
268 269 9.417561 CCGACCCCTTTATACATAGAAGATATA 57.582 37.037 0.00 0.00 0.00 0.86
473 559 2.364842 AGAGTGGGATGAGCCGCT 60.365 61.111 0.00 0.00 37.63 5.52
474 560 1.965754 GAGAGTGGGATGAGCCGCTT 61.966 60.000 0.00 0.00 37.63 4.68
478 564 2.110006 GGGATGAGCCGCTTCCTC 59.890 66.667 10.35 1.17 39.98 3.71
481 567 3.468326 GATGAGCCGCTTCCTCCCC 62.468 68.421 0.00 0.00 0.00 4.81
494 580 0.962356 CCTCCCCACTTGACATGTGC 60.962 60.000 1.15 0.00 34.38 4.57
505 591 2.601067 CATGTGCTGGCCCCACAA 60.601 61.111 24.60 12.23 45.29 3.33
506 592 1.985662 CATGTGCTGGCCCCACAAT 60.986 57.895 24.60 13.58 45.29 2.71
515 601 2.401766 GCCCCACAATGAGAGCACG 61.402 63.158 0.00 0.00 0.00 5.34
519 605 0.514255 CCACAATGAGAGCACGTGTG 59.486 55.000 18.38 7.97 40.49 3.82
551 637 5.896073 AACAAAACAATTGGTATGGGGAA 57.104 34.783 10.83 0.00 0.00 3.97
552 638 5.222079 ACAAAACAATTGGTATGGGGAAC 57.778 39.130 10.83 0.00 0.00 3.62
553 639 4.656112 ACAAAACAATTGGTATGGGGAACA 59.344 37.500 10.83 0.00 0.00 3.18
554 640 5.221621 ACAAAACAATTGGTATGGGGAACAG 60.222 40.000 10.83 0.00 0.00 3.16
555 641 3.825908 ACAATTGGTATGGGGAACAGT 57.174 42.857 10.83 0.00 0.00 3.55
656 742 0.179073 ATGAAATCTCCCGCAGTCCG 60.179 55.000 0.00 0.00 0.00 4.79
678 764 0.108585 GGGAGCAAGTGAGACAACCA 59.891 55.000 0.00 0.00 0.00 3.67
679 765 1.476833 GGGAGCAAGTGAGACAACCAA 60.477 52.381 0.00 0.00 0.00 3.67
703 789 4.562425 CCACCCGGCCGTGCATAT 62.562 66.667 26.12 0.00 32.10 1.78
704 790 2.423874 CACCCGGCCGTGCATATA 59.576 61.111 26.12 0.00 0.00 0.86
705 791 1.003839 CACCCGGCCGTGCATATAT 60.004 57.895 26.12 0.00 0.00 0.86
706 792 0.248012 CACCCGGCCGTGCATATATA 59.752 55.000 26.12 0.00 0.00 0.86
707 793 1.134521 CACCCGGCCGTGCATATATAT 60.135 52.381 26.12 0.00 0.00 0.86
708 794 1.134521 ACCCGGCCGTGCATATATATG 60.135 52.381 26.12 17.01 36.78 1.78
709 795 1.134521 CCCGGCCGTGCATATATATGT 60.135 52.381 26.12 0.00 36.11 2.29
710 796 2.101750 CCCGGCCGTGCATATATATGTA 59.898 50.000 26.12 15.57 36.11 2.29
711 797 3.244078 CCCGGCCGTGCATATATATGTAT 60.244 47.826 26.12 0.00 36.11 2.29
712 798 4.021807 CCCGGCCGTGCATATATATGTATA 60.022 45.833 26.12 8.08 36.11 1.47
713 799 5.337250 CCCGGCCGTGCATATATATGTATAT 60.337 44.000 26.12 0.00 34.54 0.86
714 800 5.576774 CCGGCCGTGCATATATATGTATATG 59.423 44.000 26.12 19.80 46.84 1.78
715 801 6.156519 CGGCCGTGCATATATATGTATATGT 58.843 40.000 19.50 0.00 46.26 2.29
716 802 7.309920 CGGCCGTGCATATATATGTATATGTA 58.690 38.462 19.50 18.58 46.26 2.29
717 803 7.973944 CGGCCGTGCATATATATGTATATGTAT 59.026 37.037 19.50 0.00 46.26 2.29
718 804 9.087424 GGCCGTGCATATATATGTATATGTATG 57.913 37.037 22.95 22.50 46.26 2.39
719 805 9.639601 GCCGTGCATATATATGTATATGTATGT 57.360 33.333 24.61 0.00 46.26 2.29
777 867 5.248477 ACCCTAGCCATTACGAACATATCAT 59.752 40.000 0.00 0.00 0.00 2.45
793 883 2.355126 ATATCTGCTCCACGCGCG 60.355 61.111 30.96 30.96 43.27 6.86
905 1009 0.106116 ACCTCTCCGGATCCTGTACC 60.106 60.000 3.57 0.00 36.31 3.34
973 1092 1.874872 CTCCGATCGACTACTTCCTCC 59.125 57.143 18.66 0.00 0.00 4.30
985 1104 2.194859 ACTTCCTCCACATCTGCATCT 58.805 47.619 0.00 0.00 0.00 2.90
991 1111 3.204526 CTCCACATCTGCATCTTCTTCC 58.795 50.000 0.00 0.00 0.00 3.46
1231 1377 5.643664 GCATGTGCTTATTTCTGTCAATGA 58.356 37.500 0.00 0.00 38.21 2.57
1243 1389 6.968131 TTCTGTCAATGACATGCTAGTAAC 57.032 37.500 17.10 0.00 41.94 2.50
1273 1424 6.744082 CCGTGGATTAATTTAGTCGAAAAACC 59.256 38.462 0.00 0.00 0.00 3.27
1276 1427 6.072618 TGGATTAATTTAGTCGAAAAACCGCA 60.073 34.615 0.00 0.00 0.00 5.69
1296 1448 5.718649 GCATATTTACTCAGCGAAGACAA 57.281 39.130 0.00 0.00 0.00 3.18
1310 1462 5.594725 AGCGAAGACAAGGAGTATATCTTCA 59.405 40.000 11.60 0.00 43.55 3.02
1330 1482 8.586879 TCTTCAGTGTATATCTCCAGGATATG 57.413 38.462 8.00 0.00 44.61 1.78
1331 1483 8.173412 TCTTCAGTGTATATCTCCAGGATATGT 58.827 37.037 8.00 0.00 44.61 2.29
1345 1497 7.286313 TCCAGGATATGTAAAATATGCACACA 58.714 34.615 0.00 0.00 0.00 3.72
1388 1540 4.748892 ACGAACAAGATACACTCCATCAG 58.251 43.478 0.00 0.00 0.00 2.90
1429 2029 8.912787 ACATTAATCGATCGAAGATATACACC 57.087 34.615 23.50 0.00 45.12 4.16
1430 2030 8.520351 ACATTAATCGATCGAAGATATACACCA 58.480 33.333 23.50 0.72 45.12 4.17
1452 2052 6.936335 ACCACATTAATCGAAGATATGCATGA 59.064 34.615 10.16 0.00 45.12 3.07
1454 2054 7.961283 CCACATTAATCGAAGATATGCATGAAG 59.039 37.037 10.16 0.00 45.12 3.02
1456 2056 9.276590 ACATTAATCGAAGATATGCATGAAGAA 57.723 29.630 10.16 0.00 45.12 2.52
1460 2060 8.618702 AATCGAAGATATGCATGAAGAAAGAT 57.381 30.769 10.16 3.68 45.12 2.40
1487 2095 6.912203 TTGCATTAATCGGTAAAATCTCGA 57.088 33.333 0.00 0.00 37.33 4.04
1488 2096 6.525121 TGCATTAATCGGTAAAATCTCGAG 57.475 37.500 5.93 5.93 36.34 4.04
1489 2097 5.050363 TGCATTAATCGGTAAAATCTCGAGC 60.050 40.000 7.81 0.00 36.34 5.03
1490 2098 5.599715 CATTAATCGGTAAAATCTCGAGCG 58.400 41.667 7.81 3.63 36.34 5.03
1492 2100 0.526954 TCGGTAAAATCTCGAGCGGC 60.527 55.000 7.81 0.00 34.95 6.53
1493 2101 1.488261 CGGTAAAATCTCGAGCGGCC 61.488 60.000 7.81 0.00 0.00 6.13
1494 2102 1.158484 GGTAAAATCTCGAGCGGCCC 61.158 60.000 7.81 0.00 0.00 5.80
1496 2104 2.638330 TAAAATCTCGAGCGGCCCGG 62.638 60.000 7.81 0.00 0.00 5.73
1602 2323 1.686587 GGAAACACAAGGGGACAAAGG 59.313 52.381 0.00 0.00 0.00 3.11
1610 2331 1.219393 GGGGACAAAGGCGAGAGAG 59.781 63.158 0.00 0.00 0.00 3.20
1666 2390 2.361230 AGGCGCCTACAAAAGGGC 60.361 61.111 31.86 0.00 46.65 5.19
1709 2434 1.428912 ACCACCACCACCATCATTTCT 59.571 47.619 0.00 0.00 0.00 2.52
1713 2438 2.283298 CCACCACCATCATTTCTCTCG 58.717 52.381 0.00 0.00 0.00 4.04
1728 2453 2.125912 TCGCTCGCTTCAGCCTTC 60.126 61.111 0.00 0.00 35.84 3.46
1734 2459 1.004560 CGCTTCAGCCTTCAGGTCA 60.005 57.895 0.00 0.00 37.91 4.02
2333 3088 4.023365 GGATATACTGCTCCGTAAAGTCGT 60.023 45.833 0.00 0.00 0.00 4.34
2347 3103 7.172875 TCCGTAAAGTCGTCCAATTTGATTTTA 59.827 33.333 0.00 0.00 0.00 1.52
2414 3178 4.341520 ACCTCCGCGAATATACTTCTTCTT 59.658 41.667 8.23 0.00 0.00 2.52
2417 3181 5.520632 TCCGCGAATATACTTCTTCTTCTG 58.479 41.667 8.23 0.00 0.00 3.02
2420 3184 5.116377 CGCGAATATACTTCTTCTTCTGCTC 59.884 44.000 0.00 0.00 0.00 4.26
2421 3185 5.404066 GCGAATATACTTCTTCTTCTGCTCC 59.596 44.000 0.00 0.00 0.00 4.70
2422 3186 6.737346 GCGAATATACTTCTTCTTCTGCTCCT 60.737 42.308 0.00 0.00 0.00 3.69
2423 3187 7.522399 GCGAATATACTTCTTCTTCTGCTCCTA 60.522 40.741 0.00 0.00 0.00 2.94
2424 3188 8.353684 CGAATATACTTCTTCTTCTGCTCCTAA 58.646 37.037 0.00 0.00 0.00 2.69
2442 3206 3.960755 CCTAAAAGGGGCTAGATTTTGGG 59.039 47.826 0.00 2.77 37.93 4.12
2458 3222 8.977267 AGATTTTGGGTTTGATTTGATTTTCA 57.023 26.923 0.00 0.00 0.00 2.69
2459 3223 8.839343 AGATTTTGGGTTTGATTTGATTTTCAC 58.161 29.630 0.00 0.00 0.00 3.18
2506 3270 1.202582 ACCAATCTCCTCGTCTTCGTG 59.797 52.381 0.00 0.00 38.33 4.35
2538 3302 4.390297 CGAAACAGAGGATTCTTCTTGGAC 59.610 45.833 0.00 0.00 0.00 4.02
2546 3310 3.371059 GGATTCTTCTTGGACCTCCTTCC 60.371 52.174 0.00 0.00 36.82 3.46
2547 3311 1.657804 TCTTCTTGGACCTCCTTCCC 58.342 55.000 0.00 0.00 34.33 3.97
2548 3312 0.621082 CTTCTTGGACCTCCTTCCCC 59.379 60.000 0.00 0.00 34.33 4.81
2549 3313 0.104144 TTCTTGGACCTCCTTCCCCA 60.104 55.000 0.00 0.00 34.33 4.96
2550 3314 0.840722 TCTTGGACCTCCTTCCCCAC 60.841 60.000 0.00 0.00 34.33 4.61
2551 3315 1.073319 TTGGACCTCCTTCCCCACA 60.073 57.895 0.00 0.00 34.33 4.17
2552 3316 1.423794 TTGGACCTCCTTCCCCACAC 61.424 60.000 0.00 0.00 34.33 3.82
2553 3317 2.603652 GGACCTCCTTCCCCACACC 61.604 68.421 0.00 0.00 0.00 4.16
2554 3318 2.531942 ACCTCCTTCCCCACACCC 60.532 66.667 0.00 0.00 0.00 4.61
2555 3319 3.717294 CCTCCTTCCCCACACCCG 61.717 72.222 0.00 0.00 0.00 5.28
2556 3320 2.606519 CTCCTTCCCCACACCCGA 60.607 66.667 0.00 0.00 0.00 5.14
2565 3329 1.032657 CCCACACCCGAAACAACACA 61.033 55.000 0.00 0.00 0.00 3.72
2604 3380 0.905357 GGCCTTCTAGAAGCTCCACA 59.095 55.000 24.58 0.00 37.11 4.17
2605 3381 1.406205 GGCCTTCTAGAAGCTCCACAC 60.406 57.143 24.58 8.64 37.11 3.82
2606 3382 1.276421 GCCTTCTAGAAGCTCCACACA 59.724 52.381 24.58 0.00 37.11 3.72
2607 3383 2.933056 GCCTTCTAGAAGCTCCACACAC 60.933 54.545 24.58 3.70 37.11 3.82
2628 3404 2.800970 AAAAATCTCCCCCGGGTCT 58.199 52.632 21.85 0.00 36.47 3.85
2655 3436 0.603975 GAGCCACCAGAACCTCACAC 60.604 60.000 0.00 0.00 0.00 3.82
2656 3437 1.148273 GCCACCAGAACCTCACACA 59.852 57.895 0.00 0.00 0.00 3.72
2657 3438 1.166531 GCCACCAGAACCTCACACAC 61.167 60.000 0.00 0.00 0.00 3.82
2658 3439 0.180171 CCACCAGAACCTCACACACA 59.820 55.000 0.00 0.00 0.00 3.72
2716 3497 2.034066 CCCACGGTCACCATGCTT 59.966 61.111 0.00 0.00 0.00 3.91
2742 3553 3.788135 GCGCGATCCGTACTATATTCTCC 60.788 52.174 12.10 0.00 39.71 3.71
2775 3590 4.617520 TTCGTTCAGGCAGCGGCA 62.618 61.111 11.88 0.00 43.71 5.69
2841 3664 3.846430 CCCGTTCCTACTCCGGCC 61.846 72.222 0.00 0.00 40.38 6.13
2842 3665 2.758737 CCGTTCCTACTCCGGCCT 60.759 66.667 0.00 0.00 34.62 5.19
2883 3707 4.946157 CCTGGAGCAAACACATTCTTATCT 59.054 41.667 0.00 0.00 0.00 1.98
2938 3762 3.005791 CCTGTCGATTTGCTTCCCTTTTT 59.994 43.478 0.00 0.00 0.00 1.94
2964 3788 3.242804 GCTGCTACTAGGTCAGTTAGTCG 60.243 52.174 0.00 0.00 38.80 4.18
2969 3793 2.308275 ACTAGGTCAGTTAGTCGGGTCT 59.692 50.000 0.00 0.00 31.59 3.85
2970 3794 2.305858 AGGTCAGTTAGTCGGGTCTT 57.694 50.000 0.00 0.00 0.00 3.01
3028 3852 4.769688 TCCTGTCTAGTCCGTTTCGTATA 58.230 43.478 0.00 0.00 0.00 1.47
3036 3860 1.750778 TCCGTTTCGTATACCCACTCC 59.249 52.381 0.00 0.00 0.00 3.85
3061 3887 1.694169 ATCCATCCGCCCCTGTCTT 60.694 57.895 0.00 0.00 0.00 3.01
3073 3899 3.009143 GCCCCTGTCTTTCTTCCTTTCTA 59.991 47.826 0.00 0.00 0.00 2.10
3077 3903 6.384305 CCCCTGTCTTTCTTCCTTTCTATCTA 59.616 42.308 0.00 0.00 0.00 1.98
3107 3933 1.795286 CTCGCGAGCTCTGTTTTTCTT 59.205 47.619 25.07 0.00 0.00 2.52
3114 3944 3.279434 AGCTCTGTTTTTCTTTGTCGGT 58.721 40.909 0.00 0.00 0.00 4.69
3162 3992 8.243289 ACAAAATCGATAGGCATTTCTTTTTG 57.757 30.769 16.98 16.98 37.48 2.44
3279 4113 2.579207 TTGCCTAGAGACGTGCATAC 57.421 50.000 0.00 0.00 33.08 2.39
3302 4139 0.842635 AATTGCTGCTAGGGAGGGAG 59.157 55.000 0.00 0.00 0.00 4.30
3303 4140 1.059006 ATTGCTGCTAGGGAGGGAGG 61.059 60.000 0.00 0.00 0.00 4.30
3304 4141 2.846754 GCTGCTAGGGAGGGAGGG 60.847 72.222 0.00 0.00 0.00 4.30
3305 4142 3.028683 CTGCTAGGGAGGGAGGGA 58.971 66.667 0.00 0.00 0.00 4.20
3306 4143 1.551358 CTGCTAGGGAGGGAGGGAT 59.449 63.158 0.00 0.00 0.00 3.85
3307 4144 0.835543 CTGCTAGGGAGGGAGGGATG 60.836 65.000 0.00 0.00 0.00 3.51
3308 4145 2.220586 GCTAGGGAGGGAGGGATGC 61.221 68.421 0.00 0.00 0.00 3.91
3309 4146 1.551358 CTAGGGAGGGAGGGATGCT 59.449 63.158 0.00 0.00 0.00 3.79
3310 4147 0.787084 CTAGGGAGGGAGGGATGCTA 59.213 60.000 0.00 0.00 0.00 3.49
3352 4189 8.202137 GTGGACACTGCTATTACTTTCCTATTA 58.798 37.037 0.00 0.00 0.00 0.98
3384 4221 1.878088 CGATGCTAGAACGGTAGGCTA 59.122 52.381 0.00 0.00 0.00 3.93
3385 4222 2.095668 CGATGCTAGAACGGTAGGCTAG 60.096 54.545 0.00 0.00 35.78 3.42
3435 4273 7.931578 ACTGTATACTGTATATCTGAGAGGC 57.068 40.000 13.19 0.00 0.00 4.70
3443 4281 4.522405 TGTATATCTGAGAGGCTTCTGCTC 59.478 45.833 1.65 0.00 39.59 4.26
3444 4282 2.163810 ATCTGAGAGGCTTCTGCTCT 57.836 50.000 1.65 0.00 39.59 4.09
3445 4283 1.184431 TCTGAGAGGCTTCTGCTCTG 58.816 55.000 1.65 2.81 39.59 3.35
3447 4285 0.607112 TGAGAGGCTTCTGCTCTGTG 59.393 55.000 1.65 0.00 39.59 3.66
3448 4286 0.740516 GAGAGGCTTCTGCTCTGTGC 60.741 60.000 1.65 0.00 43.25 4.57
3464 4302 5.465532 TCTGTGCTATCAAAAATGCCAAA 57.534 34.783 0.00 0.00 0.00 3.28
3469 4307 5.870978 GTGCTATCAAAAATGCCAAAGATGT 59.129 36.000 0.00 0.00 0.00 3.06
3490 4330 2.378038 TGCTGTGCTGTTCCTTTTCTT 58.622 42.857 0.00 0.00 0.00 2.52
3491 4331 2.760092 TGCTGTGCTGTTCCTTTTCTTT 59.240 40.909 0.00 0.00 0.00 2.52
3492 4332 3.195396 TGCTGTGCTGTTCCTTTTCTTTT 59.805 39.130 0.00 0.00 0.00 2.27
3493 4333 4.400884 TGCTGTGCTGTTCCTTTTCTTTTA 59.599 37.500 0.00 0.00 0.00 1.52
3494 4334 5.068987 TGCTGTGCTGTTCCTTTTCTTTTAT 59.931 36.000 0.00 0.00 0.00 1.40
3495 4335 5.403466 GCTGTGCTGTTCCTTTTCTTTTATG 59.597 40.000 0.00 0.00 0.00 1.90
3504 4446 3.197766 CCTTTTCTTTTATGGAAGGGGCC 59.802 47.826 0.00 0.00 34.58 5.80
3507 4449 2.000048 TCTTTTATGGAAGGGGCCTGT 59.000 47.619 0.84 0.00 0.00 4.00
3519 4461 1.272490 GGGGCCTGTTTCTTAGTTTGC 59.728 52.381 0.84 0.00 0.00 3.68
3544 4486 4.509915 GCCAAATTTTGCGAGAATCATG 57.490 40.909 3.50 0.00 33.17 3.07
3545 4487 3.242188 GCCAAATTTTGCGAGAATCATGC 60.242 43.478 3.50 0.00 33.17 4.06
3546 4488 4.178540 CCAAATTTTGCGAGAATCATGCT 58.821 39.130 3.50 0.00 33.17 3.79
3547 4489 5.342433 CCAAATTTTGCGAGAATCATGCTA 58.658 37.500 3.50 0.00 33.17 3.49
3549 4491 5.824904 AATTTTGCGAGAATCATGCTACT 57.175 34.783 0.00 0.00 33.17 2.57
3580 4522 2.656002 GGGGTTTTAATCCCTCTCTGC 58.344 52.381 10.57 0.00 46.44 4.26
3582 4524 3.282885 GGGTTTTAATCCCTCTCTGCTG 58.717 50.000 3.93 0.00 41.58 4.41
3679 4644 3.057596 TGGAAGATTTTGCGTTGTGGATC 60.058 43.478 0.00 0.00 0.00 3.36
3680 4645 3.191371 GGAAGATTTTGCGTTGTGGATCT 59.809 43.478 0.00 0.00 0.00 2.75
3682 4647 5.066505 GGAAGATTTTGCGTTGTGGATCTAT 59.933 40.000 0.00 0.00 0.00 1.98
3683 4648 5.741388 AGATTTTGCGTTGTGGATCTATC 57.259 39.130 0.00 0.00 0.00 2.08
3686 4651 3.610040 TTGCGTTGTGGATCTATCAGT 57.390 42.857 0.00 0.00 0.00 3.41
3701 4666 7.201830 GGATCTATCAGTTGTAGCAAGACTGTA 60.202 40.741 8.65 2.69 41.12 2.74
3703 4668 8.067751 TCTATCAGTTGTAGCAAGACTGTAAT 57.932 34.615 8.65 1.43 41.12 1.89
3708 4673 6.090088 CAGTTGTAGCAAGACTGTAATCAGAC 59.910 42.308 2.17 0.00 43.76 3.51
3710 4675 7.176865 AGTTGTAGCAAGACTGTAATCAGACTA 59.823 37.037 2.17 0.00 43.42 2.59
3711 4676 7.646548 TGTAGCAAGACTGTAATCAGACTAT 57.353 36.000 2.17 0.00 43.42 2.12
3712 4677 7.484140 TGTAGCAAGACTGTAATCAGACTATG 58.516 38.462 2.17 4.63 43.42 2.23
3713 4678 5.355596 AGCAAGACTGTAATCAGACTATGC 58.644 41.667 16.89 16.89 43.42 3.14
3799 4785 5.786457 TCCTTGGGTTTGTTAGTGGTATCTA 59.214 40.000 0.00 0.00 0.00 1.98
3812 4798 3.947834 GTGGTATCTATGCTGCAAAAGGT 59.052 43.478 6.36 6.39 0.00 3.50
3816 4802 2.715046 TCTATGCTGCAAAAGGTGAGG 58.285 47.619 6.36 0.00 0.00 3.86
3877 4867 3.715618 TTCATTAGTAAACGCTGCGTG 57.284 42.857 29.63 13.38 39.99 5.34
3925 4915 1.135199 GTTTCCACAGATGGCATGCAG 60.135 52.381 21.36 5.92 46.80 4.41
4064 5054 8.398878 TCCGGTTATTTTATTTTGTCAGAGTT 57.601 30.769 0.00 0.00 0.00 3.01
4116 5109 5.126222 TGTTGTTTGTTGGAAGATTACTGCA 59.874 36.000 0.00 0.00 0.00 4.41
4162 5156 6.018262 TCTGTCGGTGATAAAGTTTGAAGTTG 60.018 38.462 0.00 0.00 0.00 3.16
4224 5223 0.307760 GCACTGTCGGTTCTTTGGTG 59.692 55.000 0.00 0.00 0.00 4.17
4229 5228 0.942252 GTCGGTTCTTTGGTGTCCAC 59.058 55.000 0.00 0.00 30.78 4.02
4230 5229 0.834612 TCGGTTCTTTGGTGTCCACT 59.165 50.000 0.00 0.00 30.78 4.00
4237 5236 3.541632 TCTTTGGTGTCCACTTCAGTTC 58.458 45.455 0.00 0.00 30.78 3.01
4247 5246 3.057734 CCACTTCAGTTCGTGGTTAGAC 58.942 50.000 0.00 0.00 44.38 2.59
4248 5247 3.491964 CCACTTCAGTTCGTGGTTAGACA 60.492 47.826 0.00 0.00 44.38 3.41
4249 5248 4.116961 CACTTCAGTTCGTGGTTAGACAA 58.883 43.478 0.00 0.00 0.00 3.18
4250 5249 4.569162 CACTTCAGTTCGTGGTTAGACAAA 59.431 41.667 0.00 0.00 0.00 2.83
4309 5308 4.873817 TCACTGCCACTTGATTTGAATTG 58.126 39.130 0.00 0.00 0.00 2.32
4733 5732 0.249073 CAGGTACTCATCGCCTTCGG 60.249 60.000 0.00 0.00 34.60 4.30
4741 5741 1.478916 TCATCGCCTTCGGATGTGTTA 59.521 47.619 2.15 0.00 36.13 2.41
4815 5816 1.604308 TTCTGGTACGACGCAGGGA 60.604 57.895 0.00 0.00 0.00 4.20
5059 6067 5.126707 GGTTCTGAATTTCTTCCATGCATCT 59.873 40.000 0.00 0.00 0.00 2.90
5153 6161 5.301805 AGTTTGTTTATGGTAGCAAGCAAGT 59.698 36.000 0.00 0.00 36.53 3.16
5211 6219 1.764134 ACAAACCTGTACCGGAGTCAA 59.236 47.619 9.46 0.00 32.54 3.18
5331 6339 4.030216 TGCTCTGTGGGTTGATATACTCA 58.970 43.478 0.00 0.00 0.00 3.41
5334 6342 5.011533 GCTCTGTGGGTTGATATACTCAGAT 59.988 44.000 0.00 0.00 34.68 2.90
5403 6411 4.262592 GCATTTCAAACATTGGAGGAGGTT 60.263 41.667 0.00 0.00 0.00 3.50
5412 6420 0.547712 TGGAGGAGGTTTGGGAGGAG 60.548 60.000 0.00 0.00 0.00 3.69
5415 6423 0.417841 AGGAGGTTTGGGAGGAGCTA 59.582 55.000 0.00 0.00 0.00 3.32
5440 6448 6.051074 TGTGCTGATATAAGAGATGGTGTTG 58.949 40.000 0.00 0.00 0.00 3.33
5448 6456 8.954950 ATATAAGAGATGGTGTTGTTTCAGAG 57.045 34.615 0.00 0.00 0.00 3.35
5505 6513 1.376649 AGATTCTGAAGCCCAACCCT 58.623 50.000 1.43 0.00 0.00 4.34
5706 6714 0.995024 CCTCTGAAGGATGGGTTGGT 59.005 55.000 0.00 0.00 46.67 3.67
5901 6909 4.860907 GGCAAAATCTATGAAGTTGTGCTG 59.139 41.667 0.00 0.00 0.00 4.41
5946 6954 5.123027 CCTTCTCTTGGCTATTTGTTCTGAC 59.877 44.000 0.00 0.00 0.00 3.51
5962 6970 7.905604 TGTTCTGACACTTAGATTAATGGTG 57.094 36.000 0.00 0.00 0.00 4.17
5963 6971 6.878923 TGTTCTGACACTTAGATTAATGGTGG 59.121 38.462 0.00 0.00 32.88 4.61
5966 6974 4.538490 TGACACTTAGATTAATGGTGGGGT 59.462 41.667 0.00 0.00 32.88 4.95
5967 6975 5.727279 TGACACTTAGATTAATGGTGGGGTA 59.273 40.000 0.00 0.00 32.88 3.69
5968 6976 6.215841 TGACACTTAGATTAATGGTGGGGTAA 59.784 38.462 0.00 0.00 32.88 2.85
5969 6977 7.034967 ACACTTAGATTAATGGTGGGGTAAA 57.965 36.000 0.00 0.00 32.88 2.01
5970 6978 7.648770 ACACTTAGATTAATGGTGGGGTAAAT 58.351 34.615 0.00 0.00 32.88 1.40
5971 6979 8.783903 ACACTTAGATTAATGGTGGGGTAAATA 58.216 33.333 0.00 0.00 32.88 1.40
5972 6980 9.807921 CACTTAGATTAATGGTGGGGTAAATAT 57.192 33.333 0.00 0.00 0.00 1.28
5975 6983 9.969001 TTAGATTAATGGTGGGGTAAATATAGC 57.031 33.333 0.00 0.00 0.00 2.97
5976 6984 8.232098 AGATTAATGGTGGGGTAAATATAGCT 57.768 34.615 0.00 0.00 0.00 3.32
5977 6985 9.346515 AGATTAATGGTGGGGTAAATATAGCTA 57.653 33.333 0.00 0.00 0.00 3.32
5982 6990 9.975218 AATGGTGGGGTAAATATAGCTATTAAG 57.025 33.333 12.39 0.00 0.00 1.85
5983 6991 7.924541 TGGTGGGGTAAATATAGCTATTAAGG 58.075 38.462 12.39 0.00 0.00 2.69
5984 6992 7.740365 TGGTGGGGTAAATATAGCTATTAAGGA 59.260 37.037 12.39 0.00 0.00 3.36
5985 6993 8.045507 GGTGGGGTAAATATAGCTATTAAGGAC 58.954 40.741 12.39 4.49 0.00 3.85
5986 6994 8.599792 GTGGGGTAAATATAGCTATTAAGGACA 58.400 37.037 12.39 0.11 0.00 4.02
5987 6995 9.173231 TGGGGTAAATATAGCTATTAAGGACAA 57.827 33.333 12.39 0.00 0.00 3.18
5988 6996 9.445878 GGGGTAAATATAGCTATTAAGGACAAC 57.554 37.037 12.39 0.71 0.00 3.32
6051 7059 7.446931 TGTCACCTGAGTCAGATATCTTATCTC 59.553 40.741 22.09 11.13 32.44 2.75
6052 7060 6.652900 TCACCTGAGTCAGATATCTTATCTCG 59.347 42.308 22.09 2.36 32.44 4.04
6073 7081 6.039047 TCTCGTAACGATTATTAGAAGCACCT 59.961 38.462 0.00 0.00 34.61 4.00
6137 7146 5.464069 TCAGACTTATTAGCCATGTCCCTA 58.536 41.667 0.00 0.00 0.00 3.53
6411 7422 8.311836 TCAGGAAATAGTGAACTTTAGGTGTAG 58.688 37.037 0.00 0.00 0.00 2.74
6424 7435 9.588096 AACTTTAGGTGTAGAATTTTGATCCTT 57.412 29.630 0.00 0.00 0.00 3.36
6425 7436 9.232473 ACTTTAGGTGTAGAATTTTGATCCTTC 57.768 33.333 0.00 0.00 0.00 3.46
6429 7440 7.694093 AGGTGTAGAATTTTGATCCTTCTCTT 58.306 34.615 0.00 0.00 31.89 2.85
6536 7563 6.588204 CCTATATCGCTACAGACTAGGAGAT 58.412 44.000 0.00 0.00 33.79 2.75
6653 7680 3.255397 AAGGACCTGCAGCTGGCT 61.255 61.111 17.12 5.50 45.15 4.75
6696 7723 1.223211 GAAGGGGAGAAGCTGGAGC 59.777 63.158 0.00 0.00 42.49 4.70
6731 7758 0.803740 GCTACGTGGAGAAGTCGAGT 59.196 55.000 1.81 0.00 0.00 4.18
6752 7779 2.111043 CCGGGCCGCTATGTGATT 59.889 61.111 23.20 0.00 0.00 2.57
7004 8031 1.450134 CGGCAAGGTGCTGCAGATA 60.450 57.895 20.43 1.74 43.46 1.98
7016 8043 2.743183 GCTGCAGATACTGAACCGGAAT 60.743 50.000 20.43 0.00 32.44 3.01
7130 8157 7.482169 ACCTTTCTTTTTCTGTTCTTTTCCT 57.518 32.000 0.00 0.00 0.00 3.36
7229 8265 5.114764 TCTTATGATCAATCTGGTGCCAA 57.885 39.130 0.00 0.00 0.00 4.52
7306 8351 9.369904 TGAAATGAGGAAAAAGAAAGAAAACTG 57.630 29.630 0.00 0.00 0.00 3.16
7346 8412 1.197036 CTTGTGATGCTGTGCACAGAG 59.803 52.381 43.32 27.76 46.59 3.35
7347 8413 0.107268 TGTGATGCTGTGCACAGAGT 59.893 50.000 43.32 31.37 46.59 3.24
7348 8414 0.516001 GTGATGCTGTGCACAGAGTG 59.484 55.000 43.32 23.26 46.59 3.51
7411 8480 3.141398 GAGCTGGTCATCAAGTGTTTGA 58.859 45.455 1.28 0.00 46.67 2.69
7419 8488 4.035558 GTCATCAAGTGTTTGAGAACAGCA 59.964 41.667 0.00 0.00 45.86 4.41
7452 8530 1.352352 TCTTCTCTTTTCAGCCCCAGG 59.648 52.381 0.00 0.00 0.00 4.45
7493 8571 7.537596 AACCATTTCATTCACCATTGAACTA 57.462 32.000 0.00 0.00 44.66 2.24
7495 8573 8.821686 ACCATTTCATTCACCATTGAACTATA 57.178 30.769 0.00 0.00 44.66 1.31
7534 8617 1.610038 CATGCAGAAGTGGTTTGAGCA 59.390 47.619 0.00 0.00 34.78 4.26
7555 8638 9.677567 TGAGCAAAACAGTAAAAATAAGTCATC 57.322 29.630 0.00 0.00 0.00 2.92
7561 8644 7.448748 ACAGTAAAAATAAGTCATCCCACAC 57.551 36.000 0.00 0.00 0.00 3.82
7577 8660 1.812922 CACGGAGGACATGAGCAGC 60.813 63.158 0.00 0.00 0.00 5.25
7588 8671 4.262808 GGACATGAGCAGCAATATACTCCT 60.263 45.833 0.00 0.00 0.00 3.69
7591 8674 4.342862 TGAGCAGCAATATACTCCTTCC 57.657 45.455 0.00 0.00 0.00 3.46
7608 8691 8.272545 ACTCCTTCCGTACCAAAATATAAAAC 57.727 34.615 0.00 0.00 0.00 2.43
7633 8716 7.043656 ACGTTTTTGTAGTTCAAATTAAGCTGC 60.044 33.333 0.00 0.00 44.15 5.25
7639 8722 8.885494 TGTAGTTCAAATTAAGCTGCAAAAAT 57.115 26.923 1.02 0.00 0.00 1.82
7642 8725 8.885494 AGTTCAAATTAAGCTGCAAAAATGTA 57.115 26.923 1.02 0.00 0.00 2.29
7681 8765 8.529476 CAGAGGTAGTAGTTTACTGGTTAACAT 58.471 37.037 8.10 0.00 39.81 2.71
7708 8792 3.069872 TCCCGTAGCTCTGTTGTTTTACA 59.930 43.478 0.00 0.00 0.00 2.41
7741 8825 3.886505 ACTTAGTCTCTGGCTTAGGATCG 59.113 47.826 0.00 0.00 0.00 3.69
7745 8829 0.676736 CTCTGGCTTAGGATCGTCCC 59.323 60.000 0.00 0.00 37.19 4.46
7747 8831 0.830648 CTGGCTTAGGATCGTCCCAA 59.169 55.000 0.00 0.00 37.19 4.12
7748 8832 0.830648 TGGCTTAGGATCGTCCCAAG 59.169 55.000 7.49 7.49 37.19 3.61
7749 8833 1.120530 GGCTTAGGATCGTCCCAAGA 58.879 55.000 13.41 0.00 37.19 3.02
7751 8835 2.548920 GGCTTAGGATCGTCCCAAGATG 60.549 54.545 13.41 0.00 37.19 2.90
7752 8836 2.548920 GCTTAGGATCGTCCCAAGATGG 60.549 54.545 13.41 0.00 37.19 3.51
7753 8837 2.471815 TAGGATCGTCCCAAGATGGT 57.528 50.000 0.00 0.00 37.19 3.55
7754 8838 1.584724 AGGATCGTCCCAAGATGGTT 58.415 50.000 0.00 0.00 37.19 3.67
7755 8839 1.210478 AGGATCGTCCCAAGATGGTTG 59.790 52.381 0.00 0.00 37.19 3.77
7756 8840 1.668419 GATCGTCCCAAGATGGTTGG 58.332 55.000 0.00 0.00 35.17 3.77
7822 8973 4.165758 AGAGATGGAAAAGGATTCAGGAGG 59.834 45.833 0.00 0.00 0.00 4.30
7949 9101 4.669197 GCACACTGTCATCGAATAAACCAC 60.669 45.833 0.00 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.908152 ATTAATGTTGTGTATATCTTCGATCGA 57.092 29.630 15.15 15.15 0.00 3.59
51 52 8.897752 GCCTGAGATTTCAAAGATTAATGTAGT 58.102 33.333 0.00 0.00 31.69 2.73
52 53 8.066595 CGCCTGAGATTTCAAAGATTAATGTAG 58.933 37.037 0.00 0.00 31.69 2.74
53 54 7.012327 CCGCCTGAGATTTCAAAGATTAATGTA 59.988 37.037 0.00 0.00 31.69 2.29
54 55 6.183360 CCGCCTGAGATTTCAAAGATTAATGT 60.183 38.462 0.00 0.00 31.69 2.71
85 86 4.959596 GGCTCATCTCGCTCCGGC 62.960 72.222 0.00 0.00 0.00 6.13
115 116 3.209097 GGTGCGTGCCAAGTGTGT 61.209 61.111 0.00 0.00 0.00 3.72
164 165 0.239879 CGCCCGTTTGTTTATGTGCT 59.760 50.000 0.00 0.00 0.00 4.40
170 171 1.603326 GTTTCCTCGCCCGTTTGTTTA 59.397 47.619 0.00 0.00 0.00 2.01
182 183 4.574828 TCTTTTTCTCCTTGTGTTTCCTCG 59.425 41.667 0.00 0.00 0.00 4.63
455 541 1.965754 AAGCGGCTCATCCCACTCTC 61.966 60.000 1.45 0.00 0.00 3.20
457 543 1.522580 GAAGCGGCTCATCCCACTC 60.523 63.158 1.45 0.00 0.00 3.51
463 549 2.110006 GGGAGGAAGCGGCTCATC 59.890 66.667 1.45 4.31 0.00 2.92
473 559 1.073763 CACATGTCAAGTGGGGAGGAA 59.926 52.381 0.00 0.00 33.43 3.36
474 560 0.692476 CACATGTCAAGTGGGGAGGA 59.308 55.000 0.00 0.00 33.43 3.71
478 564 1.246056 CCAGCACATGTCAAGTGGGG 61.246 60.000 10.05 0.00 37.46 4.96
481 567 1.582968 GGCCAGCACATGTCAAGTG 59.417 57.895 0.00 3.80 39.92 3.16
494 580 1.751927 GCTCTCATTGTGGGGCCAG 60.752 63.158 4.39 0.00 0.00 4.85
505 591 0.250038 AGCAACACACGTGCTCTCAT 60.250 50.000 17.22 0.00 32.98 2.90
506 592 1.143838 AGCAACACACGTGCTCTCA 59.856 52.632 17.22 0.00 32.98 3.27
515 601 3.923461 TGTTTTGTTTAGCAGCAACACAC 59.077 39.130 0.00 0.00 33.81 3.82
519 605 5.064579 ACCAATTGTTTTGTTTAGCAGCAAC 59.935 36.000 4.43 0.00 0.00 4.17
551 637 1.629043 TCAAGAGAGGCGGTTACTGT 58.371 50.000 0.00 0.00 0.00 3.55
552 638 2.743636 TTCAAGAGAGGCGGTTACTG 57.256 50.000 0.00 0.00 0.00 2.74
553 639 2.897969 TCTTTCAAGAGAGGCGGTTACT 59.102 45.455 0.00 0.00 0.00 2.24
554 640 3.314541 TCTTTCAAGAGAGGCGGTTAC 57.685 47.619 0.00 0.00 0.00 2.50
555 641 4.345859 TTTCTTTCAAGAGAGGCGGTTA 57.654 40.909 0.00 0.00 36.22 2.85
635 721 1.139853 GGACTGCGGGAGATTTCATCT 59.860 52.381 2.65 0.00 43.70 2.90
656 742 0.033504 TTGTCTCACTTGCTCCCGAC 59.966 55.000 0.00 0.00 0.00 4.79
724 810 7.872993 GCCAACGCCTCATATATATACATACAT 59.127 37.037 0.00 0.00 0.00 2.29
725 811 7.207383 GCCAACGCCTCATATATATACATACA 58.793 38.462 0.00 0.00 0.00 2.29
726 812 7.639162 GCCAACGCCTCATATATATACATAC 57.361 40.000 0.00 0.00 0.00 2.39
762 848 7.761704 GTGGAGCAGATATGATATGTTCGTAAT 59.238 37.037 0.00 0.00 33.31 1.89
793 883 4.754667 GGGAACGACTGGGGCGAC 62.755 72.222 0.00 0.00 0.00 5.19
869 973 1.671379 GTGGGGTTTCTGAGGCGTC 60.671 63.158 0.00 0.00 0.00 5.19
905 1009 1.301009 GCTTAATCGCCCCTCTCCG 60.301 63.158 0.00 0.00 0.00 4.63
973 1092 3.870274 TGAGGAAGAAGATGCAGATGTG 58.130 45.455 0.00 0.00 0.00 3.21
985 1104 2.912295 TGGACATGGTGATGAGGAAGAA 59.088 45.455 0.00 0.00 33.36 2.52
991 1111 0.176449 TCGCTGGACATGGTGATGAG 59.824 55.000 0.00 0.00 33.36 2.90
1143 1288 8.972127 AGATCCATCTACGTATAACAATAGCAT 58.028 33.333 0.00 0.00 34.85 3.79
1144 1289 8.244113 CAGATCCATCTACGTATAACAATAGCA 58.756 37.037 0.00 0.00 34.85 3.49
1149 1294 6.650427 AGCAGATCCATCTACGTATAACAA 57.350 37.500 0.00 0.00 34.85 2.83
1231 1377 4.647853 TCCACGGATAAGTTACTAGCATGT 59.352 41.667 0.00 0.00 0.00 3.21
1243 1389 8.583810 TTCGACTAAATTAATCCACGGATAAG 57.416 34.615 0.00 0.00 33.97 1.73
1273 1424 3.796717 TGTCTTCGCTGAGTAAATATGCG 59.203 43.478 0.00 0.00 46.71 4.73
1276 1427 6.127310 ACTCCTTGTCTTCGCTGAGTAAATAT 60.127 38.462 0.00 0.00 31.70 1.28
1289 1441 7.777095 ACACTGAAGATATACTCCTTGTCTTC 58.223 38.462 6.50 6.50 43.04 2.87
1296 1448 9.914834 GGAGATATACACTGAAGATATACTCCT 57.085 37.037 0.00 0.00 33.15 3.69
1378 1530 6.146216 GTGTATATCTTCGACTGATGGAGTG 58.854 44.000 9.58 0.00 33.83 3.51
1379 1531 5.828328 TGTGTATATCTTCGACTGATGGAGT 59.172 40.000 9.58 0.00 37.76 3.85
1388 1540 9.177304 TCGATTAATGTTGTGTATATCTTCGAC 57.823 33.333 0.00 0.00 0.00 4.20
1412 1564 8.689251 ATTAATGTGGTGTATATCTTCGATCG 57.311 34.615 9.36 9.36 0.00 3.69
1416 2016 8.515473 TTCGATTAATGTGGTGTATATCTTCG 57.485 34.615 0.00 0.00 0.00 3.79
1429 2029 8.715088 TCTTCATGCATATCTTCGATTAATGTG 58.285 33.333 0.00 0.00 0.00 3.21
1430 2030 8.837788 TCTTCATGCATATCTTCGATTAATGT 57.162 30.769 0.00 0.00 0.00 2.71
1478 2086 2.511600 CGGGCCGCTCGAGATTTT 60.512 61.111 18.75 0.00 0.00 1.82
1500 2108 2.546494 AAGTGTGCGTGCCTGAAGC 61.546 57.895 0.00 0.00 44.14 3.86
1501 2109 1.280746 CAAGTGTGCGTGCCTGAAG 59.719 57.895 0.00 0.00 0.00 3.02
1502 2110 2.186160 CCAAGTGTGCGTGCCTGAA 61.186 57.895 0.00 0.00 0.00 3.02
1531 2251 4.329545 GTGTGCTTGGAGCCGGGA 62.330 66.667 2.18 0.00 41.51 5.14
1602 2323 2.997897 ACCACCACCCTCTCTCGC 60.998 66.667 0.00 0.00 0.00 5.03
1646 2367 2.106683 CCTTTTGTAGGCGCCTCCG 61.107 63.158 36.73 15.31 40.77 4.63
1678 2403 2.203139 TGGTGGTGGTGAGTTGCG 60.203 61.111 0.00 0.00 0.00 4.85
1685 2410 1.603455 GATGGTGGTGGTGGTGGTG 60.603 63.158 0.00 0.00 0.00 4.17
1686 2411 1.434513 ATGATGGTGGTGGTGGTGGT 61.435 55.000 0.00 0.00 0.00 4.16
1687 2412 0.251742 AATGATGGTGGTGGTGGTGG 60.252 55.000 0.00 0.00 0.00 4.61
1709 2434 2.549611 GAAGGCTGAAGCGAGCGAGA 62.550 60.000 0.00 0.00 43.26 4.04
1713 2438 2.105466 CCTGAAGGCTGAAGCGAGC 61.105 63.158 0.00 0.00 43.26 5.03
1734 2459 2.515901 GGAACAGGCGGGGCATAT 59.484 61.111 0.00 0.00 0.00 1.78
1867 2611 3.507009 GACGACGAGGAGGACGGG 61.507 72.222 0.00 0.00 34.93 5.28
1870 2614 2.783935 GACGACGACGAGGAGGAC 59.216 66.667 15.32 0.00 42.66 3.85
2240 2990 0.321475 ACCAAGAAGAGCAGAGCAGC 60.321 55.000 0.00 0.00 0.00 5.25
2279 3031 1.355066 GCGAAAGAAGGGCGACAGAG 61.355 60.000 0.00 0.00 0.00 3.35
2333 3088 4.440802 CGGGCGGAATAAAATCAAATTGGA 60.441 41.667 0.00 0.00 0.00 3.53
2414 3178 2.119495 CTAGCCCCTTTTAGGAGCAGA 58.881 52.381 2.00 0.00 37.67 4.26
2417 3181 3.866703 AATCTAGCCCCTTTTAGGAGC 57.133 47.619 0.00 0.00 37.67 4.70
2420 3184 3.960755 CCCAAAATCTAGCCCCTTTTAGG 59.039 47.826 0.00 0.00 34.30 2.69
2421 3185 4.610333 ACCCAAAATCTAGCCCCTTTTAG 58.390 43.478 0.00 0.00 0.00 1.85
2422 3186 4.685513 ACCCAAAATCTAGCCCCTTTTA 57.314 40.909 0.00 0.00 0.00 1.52
2423 3187 3.560357 ACCCAAAATCTAGCCCCTTTT 57.440 42.857 0.00 0.00 0.00 2.27
2424 3188 3.560357 AACCCAAAATCTAGCCCCTTT 57.440 42.857 0.00 0.00 0.00 3.11
2425 3189 3.173151 CAAACCCAAAATCTAGCCCCTT 58.827 45.455 0.00 0.00 0.00 3.95
2442 3206 4.381566 CGTCCCGTGAAAATCAAATCAAAC 59.618 41.667 0.00 0.00 0.00 2.93
2474 3238 3.829026 AGGAGATTGGTTTTGGAAAGCTC 59.171 43.478 0.00 0.00 35.99 4.09
2483 3247 3.244112 ACGAAGACGAGGAGATTGGTTTT 60.244 43.478 0.00 0.00 42.66 2.43
2506 3270 1.566018 CCTCTGTTTCGGCGGTCAAC 61.566 60.000 7.21 8.75 0.00 3.18
2538 3302 3.717294 CGGGTGTGGGGAAGGAGG 61.717 72.222 0.00 0.00 0.00 4.30
2546 3310 1.032657 TGTGTTGTTTCGGGTGTGGG 61.033 55.000 0.00 0.00 0.00 4.61
2547 3311 0.811915 TTGTGTTGTTTCGGGTGTGG 59.188 50.000 0.00 0.00 0.00 4.17
2548 3312 1.202245 CCTTGTGTTGTTTCGGGTGTG 60.202 52.381 0.00 0.00 0.00 3.82
2549 3313 1.099689 CCTTGTGTTGTTTCGGGTGT 58.900 50.000 0.00 0.00 0.00 4.16
2550 3314 1.384525 TCCTTGTGTTGTTTCGGGTG 58.615 50.000 0.00 0.00 0.00 4.61
2551 3315 2.131776 TTCCTTGTGTTGTTTCGGGT 57.868 45.000 0.00 0.00 0.00 5.28
2552 3316 2.350388 CGATTCCTTGTGTTGTTTCGGG 60.350 50.000 0.00 0.00 0.00 5.14
2553 3317 2.289547 ACGATTCCTTGTGTTGTTTCGG 59.710 45.455 0.00 0.00 0.00 4.30
2554 3318 3.602390 ACGATTCCTTGTGTTGTTTCG 57.398 42.857 0.00 0.00 0.00 3.46
2555 3319 3.966218 CGAACGATTCCTTGTGTTGTTTC 59.034 43.478 0.00 0.00 0.00 2.78
2556 3320 3.375922 ACGAACGATTCCTTGTGTTGTTT 59.624 39.130 0.14 0.00 0.00 2.83
2565 3329 1.439679 GGAAGCACGAACGATTCCTT 58.560 50.000 11.99 7.66 38.53 3.36
2623 3399 2.047179 GGCTCGTTGACCAGACCC 60.047 66.667 0.00 0.00 0.00 4.46
2625 3401 1.668151 GGTGGCTCGTTGACCAGAC 60.668 63.158 0.00 0.00 36.38 3.51
2626 3402 2.137528 TGGTGGCTCGTTGACCAGA 61.138 57.895 0.00 0.00 36.38 3.86
2627 3403 2.425592 TGGTGGCTCGTTGACCAG 59.574 61.111 0.00 0.00 36.38 4.00
2628 3404 1.691195 TTCTGGTGGCTCGTTGACCA 61.691 55.000 0.00 0.00 37.43 4.02
2657 3438 4.742201 CAGTGGACGCGGGGACTG 62.742 72.222 12.47 14.75 38.10 3.51
2742 3553 2.685380 AACCGGAGCAGGAGAGGG 60.685 66.667 9.46 0.00 34.73 4.30
2789 3604 2.668550 GTGGCCGTGGGAACTGAC 60.669 66.667 0.00 0.00 0.00 3.51
2897 3721 2.743752 CGAAGTGCGCAGACATGGG 61.744 63.158 12.22 0.00 42.10 4.00
2938 3762 0.687757 CTGACCTAGTAGCAGCCCCA 60.688 60.000 0.00 0.00 0.00 4.96
2964 3788 3.344515 GGGAGTAAATGTGACAAGACCC 58.655 50.000 0.00 0.00 0.00 4.46
2969 3793 4.993705 AAGAGGGGAGTAAATGTGACAA 57.006 40.909 0.00 0.00 0.00 3.18
2970 3794 4.562757 CGAAAGAGGGGAGTAAATGTGACA 60.563 45.833 0.00 0.00 0.00 3.58
3028 3852 0.044702 TGGATGGAGATGGAGTGGGT 59.955 55.000 0.00 0.00 0.00 4.51
3036 3860 1.002868 GGGCGGATGGATGGAGATG 60.003 63.158 0.00 0.00 0.00 2.90
3061 3887 7.707035 GCGAAGAACATAGATAGAAAGGAAGAA 59.293 37.037 0.00 0.00 0.00 2.52
3073 3899 1.333931 TCGCGAGCGAAGAACATAGAT 59.666 47.619 18.25 0.00 46.01 1.98
3107 3933 3.998672 GGACCTCGGCACCGACAA 61.999 66.667 7.89 0.00 44.01 3.18
3114 3944 1.760875 GTAGGGATGGACCTCGGCA 60.761 63.158 0.00 0.00 42.09 5.69
3162 3992 3.329929 ACAGTGGAATCCTACGAAACC 57.670 47.619 0.00 0.00 0.00 3.27
3188 4018 7.553044 TCGACGAATCATCTATCCATACATAGT 59.447 37.037 0.00 0.00 0.00 2.12
3189 4019 7.920738 TCGACGAATCATCTATCCATACATAG 58.079 38.462 0.00 0.00 0.00 2.23
3190 4020 7.859325 TCGACGAATCATCTATCCATACATA 57.141 36.000 0.00 0.00 0.00 2.29
3201 4031 6.280643 TGGTGAAATATTCGACGAATCATCT 58.719 36.000 25.41 9.75 33.95 2.90
3279 4113 1.747355 CCTCCCTAGCAGCAATTGTTG 59.253 52.381 17.11 17.11 0.00 3.33
3302 4139 0.038709 CGCTCTAGCAGTAGCATCCC 60.039 60.000 2.44 0.00 45.49 3.85
3303 4140 0.955178 TCGCTCTAGCAGTAGCATCC 59.045 55.000 2.44 0.00 45.49 3.51
3304 4141 1.606668 ACTCGCTCTAGCAGTAGCATC 59.393 52.381 2.44 0.00 45.49 3.91
3305 4142 1.336440 CACTCGCTCTAGCAGTAGCAT 59.664 52.381 2.44 0.00 45.49 3.79
3306 4143 0.735471 CACTCGCTCTAGCAGTAGCA 59.265 55.000 2.44 0.00 45.49 3.49
3307 4144 0.030101 CCACTCGCTCTAGCAGTAGC 59.970 60.000 2.44 0.00 42.21 3.58
3308 4145 1.064803 CACCACTCGCTCTAGCAGTAG 59.935 57.143 2.44 1.55 42.21 2.57
3309 4146 1.095600 CACCACTCGCTCTAGCAGTA 58.904 55.000 2.44 0.00 42.21 2.74
3310 4147 1.599606 CCACCACTCGCTCTAGCAGT 61.600 60.000 2.44 2.47 42.21 4.40
3335 4172 9.425577 GAGTGGACATAATAGGAAAGTAATAGC 57.574 37.037 0.00 0.00 0.00 2.97
3352 4189 1.410517 CTAGCATCGGTGAGTGGACAT 59.589 52.381 0.00 0.00 0.00 3.06
3384 4221 5.337578 TTCTTTTTGTGGTAAAAGCAGCT 57.662 34.783 0.00 0.00 42.26 4.24
3385 4222 5.752955 TGATTCTTTTTGTGGTAAAAGCAGC 59.247 36.000 0.00 0.00 42.26 5.25
3419 4256 4.523943 AGCAGAAGCCTCTCAGATATACAG 59.476 45.833 0.00 0.00 43.56 2.74
3430 4268 1.296068 GCACAGAGCAGAAGCCTCT 59.704 57.895 0.00 0.00 44.79 3.69
3443 4281 5.472148 TCTTTGGCATTTTTGATAGCACAG 58.528 37.500 0.00 0.00 0.00 3.66
3444 4282 5.465532 TCTTTGGCATTTTTGATAGCACA 57.534 34.783 0.00 0.00 0.00 4.57
3445 4283 5.870978 ACATCTTTGGCATTTTTGATAGCAC 59.129 36.000 0.00 0.00 0.00 4.40
3447 4285 6.673796 GCAACATCTTTGGCATTTTTGATAGC 60.674 38.462 0.00 0.00 0.00 2.97
3448 4286 6.592607 AGCAACATCTTTGGCATTTTTGATAG 59.407 34.615 0.00 0.00 0.00 2.08
3464 4302 1.202855 AGGAACAGCACAGCAACATCT 60.203 47.619 0.00 0.00 0.00 2.90
3469 4307 2.378038 AGAAAAGGAACAGCACAGCAA 58.622 42.857 0.00 0.00 0.00 3.91
3490 4330 2.381961 AGAAACAGGCCCCTTCCATAAA 59.618 45.455 0.00 0.00 0.00 1.40
3491 4331 2.000048 AGAAACAGGCCCCTTCCATAA 59.000 47.619 0.00 0.00 0.00 1.90
3492 4332 1.681229 AGAAACAGGCCCCTTCCATA 58.319 50.000 0.00 0.00 0.00 2.74
3493 4333 0.786435 AAGAAACAGGCCCCTTCCAT 59.214 50.000 0.00 0.00 0.00 3.41
3494 4334 1.354368 CTAAGAAACAGGCCCCTTCCA 59.646 52.381 0.00 0.00 0.00 3.53
3495 4335 1.354705 ACTAAGAAACAGGCCCCTTCC 59.645 52.381 0.00 0.00 0.00 3.46
3504 4446 3.058293 TGGCGATGCAAACTAAGAAACAG 60.058 43.478 0.00 0.00 0.00 3.16
3507 4449 4.576216 TTTGGCGATGCAAACTAAGAAA 57.424 36.364 0.00 0.00 0.00 2.52
3541 4483 1.273606 CCTCCCGGATACAGTAGCATG 59.726 57.143 0.73 0.00 0.00 4.06
3544 4486 1.186267 CCCCTCCCGGATACAGTAGC 61.186 65.000 0.73 0.00 0.00 3.58
3545 4487 0.187851 ACCCCTCCCGGATACAGTAG 59.812 60.000 0.73 0.00 0.00 2.57
3546 4488 0.638292 AACCCCTCCCGGATACAGTA 59.362 55.000 0.73 0.00 0.00 2.74
3547 4489 0.253020 AAACCCCTCCCGGATACAGT 60.253 55.000 0.73 0.00 0.00 3.55
3549 4491 2.267160 TAAAACCCCTCCCGGATACA 57.733 50.000 0.73 0.00 0.00 2.29
3563 4505 4.579869 TCACAGCAGAGAGGGATTAAAAC 58.420 43.478 0.00 0.00 0.00 2.43
3568 4510 2.244486 TCTCACAGCAGAGAGGGATT 57.756 50.000 3.85 0.00 39.62 3.01
3571 4513 2.630158 CATTTCTCACAGCAGAGAGGG 58.370 52.381 3.85 0.00 44.78 4.30
3572 4514 2.008329 GCATTTCTCACAGCAGAGAGG 58.992 52.381 3.85 0.98 44.78 3.69
3580 4522 1.325640 CGTCATCGGCATTTCTCACAG 59.674 52.381 0.00 0.00 0.00 3.66
3679 4644 7.976175 TGATTACAGTCTTGCTACAACTGATAG 59.024 37.037 8.59 0.00 42.37 2.08
3680 4645 7.836842 TGATTACAGTCTTGCTACAACTGATA 58.163 34.615 8.59 0.00 42.37 2.15
3682 4647 6.015434 TCTGATTACAGTCTTGCTACAACTGA 60.015 38.462 8.59 0.00 42.37 3.41
3683 4648 6.090088 GTCTGATTACAGTCTTGCTACAACTG 59.910 42.308 0.00 0.00 44.68 3.16
3686 4651 6.346477 AGTCTGATTACAGTCTTGCTACAA 57.654 37.500 0.00 0.00 43.81 2.41
3701 4666 0.833287 ACGCCAGGCATAGTCTGATT 59.167 50.000 13.30 0.00 37.47 2.57
3703 4668 1.517361 CACGCCAGGCATAGTCTGA 59.483 57.895 13.30 0.00 37.47 3.27
3726 4708 6.485830 AGCTAAAGCATATACTGACAGGAA 57.514 37.500 7.51 0.00 45.16 3.36
3728 4710 6.512415 GCAAAGCTAAAGCATATACTGACAGG 60.512 42.308 7.51 0.00 45.16 4.00
3729 4711 6.259608 AGCAAAGCTAAAGCATATACTGACAG 59.740 38.462 4.54 0.00 45.16 3.51
3799 4785 2.097825 GATCCTCACCTTTTGCAGCAT 58.902 47.619 0.00 0.00 0.00 3.79
3812 4798 1.355718 GGGAGGGGCATTGATCCTCA 61.356 60.000 20.13 0.00 46.55 3.86
3816 4802 1.406903 CAAAGGGAGGGGCATTGATC 58.593 55.000 0.00 0.00 0.00 2.92
3820 4806 1.305549 CAGCAAAGGGAGGGGCATT 60.306 57.895 0.00 0.00 0.00 3.56
3877 4867 3.078891 AGCCTGAGATTTCACTTTCCC 57.921 47.619 0.00 0.00 0.00 3.97
3925 4915 1.205417 CATGGAAAACCATGGCCACTC 59.795 52.381 8.16 3.32 42.53 3.51
4020 5010 2.265683 GATACGAAAAGTGACCGACCC 58.734 52.381 0.00 0.00 0.00 4.46
4229 5228 5.499047 GTTTTGTCTAACCACGAACTGAAG 58.501 41.667 0.00 0.00 0.00 3.02
4230 5229 4.333372 GGTTTTGTCTAACCACGAACTGAA 59.667 41.667 0.00 0.00 45.59 3.02
4237 5236 0.111001 CGCGGTTTTGTCTAACCACG 60.111 55.000 0.00 4.26 46.43 4.94
4245 5244 4.039032 TCAAAAGATTTCGCGGTTTTGTC 58.961 39.130 20.30 8.27 39.70 3.18
4247 5246 4.041723 AGTCAAAAGATTTCGCGGTTTTG 58.958 39.130 6.13 14.19 39.96 2.44
4248 5247 4.287720 GAGTCAAAAGATTTCGCGGTTTT 58.712 39.130 6.13 2.38 0.00 2.43
4249 5248 3.606153 CGAGTCAAAAGATTTCGCGGTTT 60.606 43.478 6.13 0.00 0.00 3.27
4250 5249 2.096417 CGAGTCAAAAGATTTCGCGGTT 60.096 45.455 6.13 0.00 0.00 4.44
4253 5252 1.514136 GCGAGTCAAAAGATTTCGCG 58.486 50.000 0.00 0.00 45.53 5.87
4256 5255 3.186613 AGAACGGCGAGTCAAAAGATTTC 59.813 43.478 16.62 1.68 0.00 2.17
4317 5316 0.098376 GAAGAGCTGAAGGCATTGCG 59.902 55.000 1.91 0.00 44.79 4.85
4462 5461 5.743872 CGTCAACATCTCGAACTCATTGATA 59.256 40.000 0.00 0.00 0.00 2.15
4733 5732 7.047891 TCCATAGGACAACAAGATAACACATC 58.952 38.462 0.00 0.00 0.00 3.06
4741 5741 7.682787 ATCTACTTCCATAGGACAACAAGAT 57.317 36.000 0.00 0.00 0.00 2.40
4815 5816 2.907458 ATGGCAGGAACTTAGGCTTT 57.093 45.000 0.00 0.00 34.60 3.51
4976 5977 2.577449 ACAACAAAAGTTTCTGCCGG 57.423 45.000 0.00 0.00 0.00 6.13
5211 6219 1.568504 TCATCCCTTCCTTGTAGCGT 58.431 50.000 0.00 0.00 0.00 5.07
5331 6339 1.573108 ACACGGAATGGACCTCATCT 58.427 50.000 0.00 0.00 34.44 2.90
5334 6342 1.275291 GAGAACACGGAATGGACCTCA 59.725 52.381 0.00 0.00 0.00 3.86
5412 6420 6.534436 CACCATCTCTTATATCAGCACATAGC 59.466 42.308 0.00 0.00 46.19 2.97
5415 6423 6.430962 ACACCATCTCTTATATCAGCACAT 57.569 37.500 0.00 0.00 0.00 3.21
5440 6448 6.861065 TGGTACTGTGATTTTCTCTGAAAC 57.139 37.500 0.00 0.00 0.00 2.78
5448 6456 5.739161 GCGAATTGATGGTACTGTGATTTTC 59.261 40.000 0.00 0.00 0.00 2.29
5505 6513 0.174389 GGATCGAGTCAGCAAGCTCA 59.826 55.000 0.00 0.00 0.00 4.26
5664 6672 1.410517 CCATAGTCGGCACTGATCAGT 59.589 52.381 22.89 22.89 43.61 3.41
5682 6690 2.586245 CATCCTTCAGAGGCGCCA 59.414 61.111 31.54 4.11 43.21 5.69
5688 6696 2.307098 AGAACCAACCCATCCTTCAGAG 59.693 50.000 0.00 0.00 0.00 3.35
5706 6714 0.533491 CCGTGGGGTCGATGTTAGAA 59.467 55.000 0.00 0.00 0.00 2.10
5745 6753 4.711892 TGCGGCAGAACAGCATAA 57.288 50.000 0.00 0.00 45.00 1.90
5901 6909 3.939592 GGAATGTACCTGCAAAGGTAGTC 59.060 47.826 5.13 4.16 44.27 2.59
5946 6954 9.807921 ATATTTACCCCACCATTAATCTAAGTG 57.192 33.333 0.00 0.00 0.00 3.16
5960 6968 8.599792 TGTCCTTAATAGCTATATTTACCCCAC 58.400 37.037 6.68 0.00 33.58 4.61
5962 6970 9.445878 GTTGTCCTTAATAGCTATATTTACCCC 57.554 37.037 6.68 0.00 33.58 4.95
5994 7002 9.048446 CAAAAGGAGAACACATGATGAAAATTT 57.952 29.630 0.00 0.00 0.00 1.82
5995 7003 7.172019 GCAAAAGGAGAACACATGATGAAAATT 59.828 33.333 0.00 0.00 0.00 1.82
6051 7059 7.919313 TTAGGTGCTTCTAATAATCGTTACG 57.081 36.000 0.00 0.00 0.00 3.18
6052 7060 9.694137 AGATTAGGTGCTTCTAATAATCGTTAC 57.306 33.333 10.57 0.00 39.31 2.50
6073 7081 5.071250 ACACACCACAAGAACCACTAGATTA 59.929 40.000 0.00 0.00 0.00 1.75
6122 7130 6.194235 TCAAATTTGTAGGGACATGGCTAAT 58.806 36.000 17.47 0.00 34.86 1.73
6137 7146 5.577945 CAGAGCAACTGTGTTTCAAATTTGT 59.422 36.000 17.47 0.00 41.30 2.83
6411 7422 9.696917 TGCTTTAAAAGAGAAGGATCAAAATTC 57.303 29.630 0.00 0.00 0.00 2.17
6485 7512 1.065564 GCAACAGAGCAGAGAAGGGAT 60.066 52.381 0.00 0.00 0.00 3.85
6536 7563 1.809619 GCGCGCTATCTTCACCACA 60.810 57.895 26.67 0.00 0.00 4.17
6668 7695 1.378250 CTCCCCTTCCAGCAGCTTG 60.378 63.158 0.00 0.00 0.00 4.01
6743 7770 4.774124 TCAGCTCCCAGAAAATCACATAG 58.226 43.478 0.00 0.00 0.00 2.23
6746 7773 2.877300 GCTCAGCTCCCAGAAAATCACA 60.877 50.000 0.00 0.00 0.00 3.58
6803 7830 3.712907 GCCAGGTCCAGGGCGTTA 61.713 66.667 8.65 0.00 40.93 3.18
6891 7918 1.750399 CCCTGAATGTGCCCTTCCG 60.750 63.158 0.00 0.00 0.00 4.30
7004 8031 1.375523 GGCGACATTCCGGTTCAGT 60.376 57.895 0.00 0.00 0.00 3.41
7016 8043 0.966179 TGAAGTAGCTCTTGGCGACA 59.034 50.000 0.00 0.00 46.58 4.35
7303 8348 3.957497 TCAGGCAAATTAACAACACCAGT 59.043 39.130 0.00 0.00 0.00 4.00
7306 8351 4.584327 AGTCAGGCAAATTAACAACACC 57.416 40.909 0.00 0.00 0.00 4.16
7347 8413 6.892658 ATTTACTTTGGAGTGTGTAATGCA 57.107 33.333 0.00 0.00 36.60 3.96
7348 8414 7.367285 TGAATTTACTTTGGAGTGTGTAATGC 58.633 34.615 0.00 0.00 36.60 3.56
7349 8415 7.538678 GCTGAATTTACTTTGGAGTGTGTAATG 59.461 37.037 0.00 0.00 36.60 1.90
7350 8416 7.230510 TGCTGAATTTACTTTGGAGTGTGTAAT 59.769 33.333 0.00 0.00 36.60 1.89
7351 8417 6.544197 TGCTGAATTTACTTTGGAGTGTGTAA 59.456 34.615 0.00 0.00 36.60 2.41
7411 8480 7.882271 AGAAGAATTAAACTGAGATGCTGTTCT 59.118 33.333 0.00 0.00 37.64 3.01
7427 8505 5.640147 TGGGGCTGAAAAGAGAAGAATTAA 58.360 37.500 0.00 0.00 0.00 1.40
7430 8508 3.563043 CCTGGGGCTGAAAAGAGAAGAAT 60.563 47.826 0.00 0.00 0.00 2.40
7452 8530 9.659503 TGAAATGGTTTCTGCAGGATTACATGC 62.660 40.741 15.13 6.98 43.70 4.06
7464 8542 4.255833 TGGTGAATGAAATGGTTTCTGC 57.744 40.909 4.32 0.00 40.32 4.26
7495 8573 8.685427 TCTGCATGTAAATTACAAAGCATACAT 58.315 29.630 25.63 2.69 45.82 2.29
7500 8578 6.862608 CACTTCTGCATGTAAATTACAAAGCA 59.137 34.615 24.60 24.60 45.27 3.91
7514 8597 1.610038 TGCTCAAACCACTTCTGCATG 59.390 47.619 0.00 0.00 0.00 4.06
7534 8617 8.919145 TGTGGGATGACTTATTTTTACTGTTTT 58.081 29.630 0.00 0.00 0.00 2.43
7551 8634 0.617535 ATGTCCTCCGTGTGGGATGA 60.618 55.000 0.00 0.00 46.04 2.92
7555 8638 1.219124 CTCATGTCCTCCGTGTGGG 59.781 63.158 0.00 0.00 35.24 4.61
7561 8644 0.463295 ATTGCTGCTCATGTCCTCCG 60.463 55.000 0.00 0.00 0.00 4.63
7577 8660 9.720769 ATATTTTGGTACGGAAGGAGTATATTG 57.279 33.333 0.00 0.00 0.00 1.90
7588 8671 9.741647 AAAAACGTTTTATATTTTGGTACGGAA 57.258 25.926 25.44 0.00 32.33 4.30
7671 8755 4.035208 GCTACGGGAATCAATGTTAACCAG 59.965 45.833 2.48 0.00 0.00 4.00
7681 8765 2.301870 ACAACAGAGCTACGGGAATCAA 59.698 45.455 0.00 0.00 0.00 2.57
7687 8771 3.185797 GTGTAAAACAACAGAGCTACGGG 59.814 47.826 0.00 0.00 0.00 5.28
7708 8792 4.322349 CCAGAGACTAAGTGCTGCTAAAGT 60.322 45.833 0.00 0.00 0.00 2.66
7745 8829 3.209410 GAGCTACATCCCAACCATCTTG 58.791 50.000 0.00 0.00 0.00 3.02
7747 8831 2.481441 TGAGCTACATCCCAACCATCT 58.519 47.619 0.00 0.00 0.00 2.90
7748 8832 3.498774 ATGAGCTACATCCCAACCATC 57.501 47.619 0.00 0.00 33.46 3.51
7749 8833 4.234550 TCTATGAGCTACATCCCAACCAT 58.765 43.478 2.47 0.00 40.07 3.55
7751 8835 3.898123 TCTCTATGAGCTACATCCCAACC 59.102 47.826 2.47 0.00 40.07 3.77
7752 8836 5.537300 TTCTCTATGAGCTACATCCCAAC 57.463 43.478 2.47 0.00 40.07 3.77
7753 8837 5.425217 TGTTTCTCTATGAGCTACATCCCAA 59.575 40.000 2.47 0.00 40.07 4.12
7754 8838 4.962362 TGTTTCTCTATGAGCTACATCCCA 59.038 41.667 2.47 0.00 40.07 4.37
7755 8839 5.303078 TCTGTTTCTCTATGAGCTACATCCC 59.697 44.000 2.47 0.00 40.07 3.85
7756 8840 6.264292 TCTCTGTTTCTCTATGAGCTACATCC 59.736 42.308 2.47 0.00 40.07 3.51
7757 8841 7.270757 TCTCTGTTTCTCTATGAGCTACATC 57.729 40.000 2.47 0.00 40.07 3.06
7759 8843 7.039714 TGTTTCTCTGTTTCTCTATGAGCTACA 60.040 37.037 0.00 0.00 0.00 2.74
7808 8959 2.921221 TCTGGTCCTCCTGAATCCTTT 58.079 47.619 0.00 0.00 38.44 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.