Multiple sequence alignment - TraesCS1D01G433800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G433800 chr1D 100.000 5080 0 0 1 5080 483073378 483068299 0.000000e+00 9382.0
1 TraesCS1D01G433800 chr1D 83.480 454 65 7 4 448 483021191 483020739 1.020000e-111 414.0
2 TraesCS1D01G433800 chr1D 83.896 385 54 4 643 1019 483020610 483020226 1.340000e-95 361.0
3 TraesCS1D01G433800 chr1D 79.174 533 94 15 4210 4733 409339678 409339154 2.250000e-93 353.0
4 TraesCS1D01G433800 chr1A 96.252 3442 124 3 1045 4481 581754108 581757549 0.000000e+00 5637.0
5 TraesCS1D01G433800 chr4A 78.186 981 196 16 4093 5065 737074015 737074985 1.210000e-170 610.0
6 TraesCS1D01G433800 chr4A 77.538 975 209 9 4093 5063 734843815 734844783 3.410000e-161 579.0
7 TraesCS1D01G433800 chr4A 81.081 555 93 10 4233 4783 713109616 713110162 2.810000e-117 433.0
8 TraesCS1D01G433800 chr4A 75.682 440 65 35 4235 4651 439389738 439390158 1.120000e-41 182.0
9 TraesCS1D01G433800 chr7D 77.655 998 205 14 4093 5080 5401543 5400554 4.380000e-165 592.0
10 TraesCS1D01G433800 chr7D 76.913 771 140 29 4019 4777 135828264 135827520 2.200000e-108 403.0
11 TraesCS1D01G433800 chr6D 79.484 697 131 11 4093 4783 269586443 269585753 7.650000e-133 484.0
12 TraesCS1D01G433800 chr6D 96.154 52 2 0 547 598 74761492 74761543 9.060000e-13 86.1
13 TraesCS1D01G433800 chr7B 75.901 888 189 24 4192 5070 590837900 590837029 1.010000e-116 431.0
14 TraesCS1D01G433800 chr1B 82.708 480 68 10 4 470 671474350 671473873 3.660000e-111 412.0
15 TraesCS1D01G433800 chr2B 74.739 958 204 34 4127 5068 373256038 373255103 1.330000e-105 394.0
16 TraesCS1D01G433800 chr2A 79.779 544 94 15 4104 4639 493788506 493787971 1.030000e-101 381.0
17 TraesCS1D01G433800 chr6A 74.059 478 112 9 4602 5077 181753798 181753331 8.690000e-43 185.0
18 TraesCS1D01G433800 chr6A 100.000 30 0 0 1237 1266 37442997 37442968 7.110000e-04 56.5
19 TraesCS1D01G433800 chr4B 98.077 52 1 0 547 598 209087157 209087106 1.950000e-14 91.6
20 TraesCS1D01G433800 chrUn 96.154 52 2 0 547 598 86511977 86511926 9.060000e-13 86.1
21 TraesCS1D01G433800 chrUn 96.154 52 2 0 547 598 171052590 171052641 9.060000e-13 86.1
22 TraesCS1D01G433800 chrUn 96.154 52 2 0 547 598 251415137 251415086 9.060000e-13 86.1
23 TraesCS1D01G433800 chrUn 96.154 52 2 0 547 598 264055634 264055583 9.060000e-13 86.1
24 TraesCS1D01G433800 chrUn 96.154 52 2 0 547 598 266525564 266525513 9.060000e-13 86.1
25 TraesCS1D01G433800 chrUn 96.154 52 2 0 547 598 282366661 282366610 9.060000e-13 86.1
26 TraesCS1D01G433800 chrUn 96.154 52 2 0 547 598 418683861 418683912 9.060000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G433800 chr1D 483068299 483073378 5079 True 9382.0 9382 100.000 1 5080 1 chr1D.!!$R2 5079
1 TraesCS1D01G433800 chr1D 483020226 483021191 965 True 387.5 414 83.688 4 1019 2 chr1D.!!$R3 1015
2 TraesCS1D01G433800 chr1D 409339154 409339678 524 True 353.0 353 79.174 4210 4733 1 chr1D.!!$R1 523
3 TraesCS1D01G433800 chr1A 581754108 581757549 3441 False 5637.0 5637 96.252 1045 4481 1 chr1A.!!$F1 3436
4 TraesCS1D01G433800 chr4A 737074015 737074985 970 False 610.0 610 78.186 4093 5065 1 chr4A.!!$F4 972
5 TraesCS1D01G433800 chr4A 734843815 734844783 968 False 579.0 579 77.538 4093 5063 1 chr4A.!!$F3 970
6 TraesCS1D01G433800 chr4A 713109616 713110162 546 False 433.0 433 81.081 4233 4783 1 chr4A.!!$F2 550
7 TraesCS1D01G433800 chr7D 5400554 5401543 989 True 592.0 592 77.655 4093 5080 1 chr7D.!!$R1 987
8 TraesCS1D01G433800 chr7D 135827520 135828264 744 True 403.0 403 76.913 4019 4777 1 chr7D.!!$R2 758
9 TraesCS1D01G433800 chr6D 269585753 269586443 690 True 484.0 484 79.484 4093 4783 1 chr6D.!!$R1 690
10 TraesCS1D01G433800 chr7B 590837029 590837900 871 True 431.0 431 75.901 4192 5070 1 chr7B.!!$R1 878
11 TraesCS1D01G433800 chr2B 373255103 373256038 935 True 394.0 394 74.739 4127 5068 1 chr2B.!!$R1 941
12 TraesCS1D01G433800 chr2A 493787971 493788506 535 True 381.0 381 79.779 4104 4639 1 chr2A.!!$R1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 84 0.037419 GCGCCCACAACCATCATTTT 60.037 50.000 0.00 0.0 0.00 1.82 F
116 126 0.039256 GCTGACGCCAATGCAGAAAA 60.039 50.000 0.00 0.0 37.32 2.29 F
703 744 0.106769 TGTTGGACACATGGCACTGT 60.107 50.000 0.00 0.0 0.00 3.55 F
1472 1521 0.170561 CTGTCCTACACCGACTTCCG 59.829 60.000 0.00 0.0 38.18 4.30 F
1767 1816 0.687354 ATACCCACATCGATGCTCCC 59.313 55.000 25.11 0.0 0.00 4.30 F
2674 2724 1.963515 GTGGGCATGGGATAATTGGAC 59.036 52.381 0.00 0.0 0.00 4.02 F
3457 3507 3.201353 TGAGACGTTGGTCATGGAAAA 57.799 42.857 0.00 0.0 45.92 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1117 1166 0.313987 GTAGTTTGGTTGCTGGTGGC 59.686 55.000 0.00 0.00 42.22 5.01 R
1472 1521 0.462047 CCCGTGTGGTATCTTGCCTC 60.462 60.000 0.00 0.00 0.00 4.70 R
1690 1739 1.373748 CAAAGGCACTGCACCATGC 60.374 57.895 2.82 4.58 45.29 4.06 R
3279 3329 1.285962 CCCCACATCTCCAATGAACCT 59.714 52.381 0.00 0.00 0.00 3.50 R
3728 3778 0.644380 ACTCCCATGGGATCTCTCCA 59.356 55.000 33.89 9.26 44.08 3.86 R
3742 3792 1.106285 GTCCAATGATGCCAACTCCC 58.894 55.000 0.00 0.00 0.00 4.30 R
4869 4948 0.455410 GCTGTCGAGTGCAGAGATCT 59.545 55.000 5.75 0.00 36.12 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.674895 GTGCCAAGCATCGGTCTCTT 60.675 55.000 0.00 0.00 41.91 2.85
21 22 0.674581 TGCCAAGCATCGGTCTCTTG 60.675 55.000 1.25 1.25 37.52 3.02
23 24 1.813513 CCAAGCATCGGTCTCTTGTT 58.186 50.000 6.49 0.00 36.41 2.83
25 26 1.391485 CAAGCATCGGTCTCTTGTTCG 59.609 52.381 0.28 0.00 34.20 3.95
28 29 1.084370 CATCGGTCTCTTGTTCGGGC 61.084 60.000 0.00 0.00 0.00 6.13
73 83 1.591183 GCGCCCACAACCATCATTT 59.409 52.632 0.00 0.00 0.00 2.32
74 84 0.037419 GCGCCCACAACCATCATTTT 60.037 50.000 0.00 0.00 0.00 1.82
78 88 2.236893 GCCCACAACCATCATTTTGGAT 59.763 45.455 0.00 0.00 39.25 3.41
81 91 4.497300 CCACAACCATCATTTTGGATGAC 58.503 43.478 7.62 0.00 46.00 3.06
85 95 3.684908 ACCATCATTTTGGATGACGACA 58.315 40.909 4.81 0.00 46.00 4.35
87 97 4.156556 ACCATCATTTTGGATGACGACAAG 59.843 41.667 4.81 0.00 46.00 3.16
94 104 1.066215 TGGATGACGACAAGATGGTGG 60.066 52.381 0.00 0.00 0.00 4.61
96 106 2.158900 GGATGACGACAAGATGGTGGAT 60.159 50.000 0.00 0.00 0.00 3.41
102 112 2.012673 GACAAGATGGTGGATGCTGAC 58.987 52.381 0.00 0.00 0.00 3.51
107 117 2.359850 GGTGGATGCTGACGCCAA 60.360 61.111 0.00 0.00 37.23 4.52
115 125 1.171549 TGCTGACGCCAATGCAGAAA 61.172 50.000 0.00 0.00 37.32 2.52
116 126 0.039256 GCTGACGCCAATGCAGAAAA 60.039 50.000 0.00 0.00 37.32 2.29
117 127 1.403249 GCTGACGCCAATGCAGAAAAT 60.403 47.619 0.00 0.00 37.32 1.82
118 128 2.159393 GCTGACGCCAATGCAGAAAATA 60.159 45.455 0.00 0.00 37.32 1.40
124 134 2.456989 CCAATGCAGAAAATAGCGCAG 58.543 47.619 11.47 0.00 37.88 5.18
142 152 2.186903 GTGGTGGATGGCGACGAT 59.813 61.111 0.00 0.00 0.00 3.73
150 160 0.164647 GATGGCGACGATAATGCAGC 59.835 55.000 0.00 0.00 0.00 5.25
151 161 1.560004 ATGGCGACGATAATGCAGCG 61.560 55.000 0.00 0.00 43.18 5.18
155 165 2.943345 GACGATAATGCAGCGGCGG 61.943 63.158 9.78 0.00 45.35 6.13
167 177 4.838152 CGGCGGTGGAGATGGTGG 62.838 72.222 0.00 0.00 0.00 4.61
169 179 2.363975 GGCGGTGGAGATGGTGGTA 61.364 63.158 0.00 0.00 0.00 3.25
172 182 0.460311 CGGTGGAGATGGTGGTAGAC 59.540 60.000 0.00 0.00 0.00 2.59
174 184 1.183549 GTGGAGATGGTGGTAGACGT 58.816 55.000 0.00 0.00 0.00 4.34
194 204 2.515523 CTCGGCTGGGCTCCATTG 60.516 66.667 0.00 0.00 30.82 2.82
198 208 2.825836 GCTGGGCTCCATTGTCCG 60.826 66.667 0.00 0.00 30.82 4.79
248 258 4.698583 AAGAAATTGCAGATGCTCTCAC 57.301 40.909 6.35 0.00 42.66 3.51
278 288 1.344763 AGGCTATGACGAAGCATACCC 59.655 52.381 0.00 0.00 41.93 3.69
286 296 1.139058 ACGAAGCATACCCCTCATCAC 59.861 52.381 0.00 0.00 0.00 3.06
289 299 1.071471 GCATACCCCTCATCACCCG 59.929 63.158 0.00 0.00 0.00 5.28
300 310 1.603455 ATCACCCGCAACAACCCTG 60.603 57.895 0.00 0.00 0.00 4.45
314 324 1.222936 CCCTGGAGCTCATGTCCAC 59.777 63.158 17.19 0.00 39.28 4.02
315 325 1.556373 CCCTGGAGCTCATGTCCACA 61.556 60.000 17.19 0.98 39.28 4.17
322 332 1.134461 AGCTCATGTCCACAGAGATGC 60.134 52.381 9.18 0.00 42.21 3.91
333 343 0.869454 CAGAGATGCTCTTCCGCGTC 60.869 60.000 4.92 0.00 44.34 5.19
339 349 2.405594 CTCTTCCGCGTCGAGAGG 59.594 66.667 17.75 4.70 41.59 3.69
342 352 1.080705 CTTCCGCGTCGAGAGGTTT 60.081 57.895 4.92 0.00 40.97 3.27
359 369 3.059166 GGTTTTGTCGGCGAACTACTTA 58.941 45.455 12.92 0.00 0.00 2.24
363 373 3.853831 TGTCGGCGAACTACTTATGAA 57.146 42.857 12.92 0.00 0.00 2.57
399 409 7.607607 TGTGACTAATATGATGCTTGTGAACTT 59.392 33.333 0.00 0.00 0.00 2.66
406 416 5.300969 TGATGCTTGTGAACTTTCTATGC 57.699 39.130 0.00 0.00 0.00 3.14
408 418 5.122869 TGATGCTTGTGAACTTTCTATGCTC 59.877 40.000 0.00 0.00 0.00 4.26
411 421 4.457257 GCTTGTGAACTTTCTATGCTCCTT 59.543 41.667 0.00 0.00 0.00 3.36
419 429 7.665559 TGAACTTTCTATGCTCCTTGTTATGTT 59.334 33.333 0.00 0.00 0.00 2.71
426 436 9.197306 TCTATGCTCCTTGTTATGTTACTTCTA 57.803 33.333 0.00 0.00 0.00 2.10
479 520 4.379813 GGTGATTGTGGTGTTGATGATCAC 60.380 45.833 0.00 0.00 40.49 3.06
483 524 2.298729 TGTGGTGTTGATGATCACTCGA 59.701 45.455 0.00 0.00 35.26 4.04
487 528 3.935203 GGTGTTGATGATCACTCGACAAT 59.065 43.478 20.56 0.00 38.44 2.71
517 558 4.404394 CCAAGTTTTGGTAAGTGGGAACTT 59.596 41.667 0.00 0.00 45.93 2.66
540 581 2.730090 GCAGAAAATGTGCCACATCTCG 60.730 50.000 11.38 8.50 37.97 4.04
547 588 2.220586 TGCCACATCTCGAACCCCA 61.221 57.895 0.00 0.00 0.00 4.96
548 589 1.002624 GCCACATCTCGAACCCCAA 60.003 57.895 0.00 0.00 0.00 4.12
549 590 0.608035 GCCACATCTCGAACCCCAAA 60.608 55.000 0.00 0.00 0.00 3.28
550 591 1.955208 GCCACATCTCGAACCCCAAAT 60.955 52.381 0.00 0.00 0.00 2.32
551 592 2.017049 CCACATCTCGAACCCCAAATC 58.983 52.381 0.00 0.00 0.00 2.17
552 593 2.017049 CACATCTCGAACCCCAAATCC 58.983 52.381 0.00 0.00 0.00 3.01
553 594 1.064685 ACATCTCGAACCCCAAATCCC 60.065 52.381 0.00 0.00 0.00 3.85
554 595 0.180406 ATCTCGAACCCCAAATCCCG 59.820 55.000 0.00 0.00 0.00 5.14
555 596 0.905809 TCTCGAACCCCAAATCCCGA 60.906 55.000 0.00 0.00 0.00 5.14
556 597 0.180406 CTCGAACCCCAAATCCCGAT 59.820 55.000 0.00 0.00 0.00 4.18
557 598 0.621609 TCGAACCCCAAATCCCGATT 59.378 50.000 0.00 0.00 0.00 3.34
558 599 0.738389 CGAACCCCAAATCCCGATTG 59.262 55.000 0.00 0.00 0.00 2.67
559 600 1.847328 GAACCCCAAATCCCGATTGT 58.153 50.000 0.00 0.00 0.00 2.71
560 601 1.476488 GAACCCCAAATCCCGATTGTG 59.524 52.381 0.00 0.00 0.00 3.33
561 602 0.407918 ACCCCAAATCCCGATTGTGT 59.592 50.000 0.00 0.00 0.00 3.72
562 603 0.817013 CCCCAAATCCCGATTGTGTG 59.183 55.000 0.00 0.00 0.00 3.82
563 604 0.817013 CCCAAATCCCGATTGTGTGG 59.183 55.000 1.22 1.22 0.00 4.17
565 606 1.544724 CAAATCCCGATTGTGTGGGT 58.455 50.000 0.00 0.00 46.13 4.51
566 607 1.202114 CAAATCCCGATTGTGTGGGTG 59.798 52.381 0.00 0.00 46.13 4.61
567 608 0.404040 AATCCCGATTGTGTGGGTGT 59.596 50.000 0.00 0.00 46.13 4.16
568 609 0.322456 ATCCCGATTGTGTGGGTGTG 60.322 55.000 0.00 0.00 46.13 3.82
569 610 1.072332 CCCGATTGTGTGGGTGTGA 59.928 57.895 0.00 0.00 40.76 3.58
570 611 0.536233 CCCGATTGTGTGGGTGTGAA 60.536 55.000 0.00 0.00 40.76 3.18
571 612 0.874390 CCGATTGTGTGGGTGTGAAG 59.126 55.000 0.00 0.00 0.00 3.02
572 613 1.593196 CGATTGTGTGGGTGTGAAGT 58.407 50.000 0.00 0.00 0.00 3.01
573 614 1.264020 CGATTGTGTGGGTGTGAAGTG 59.736 52.381 0.00 0.00 0.00 3.16
574 615 1.608590 GATTGTGTGGGTGTGAAGTGG 59.391 52.381 0.00 0.00 0.00 4.00
575 616 0.621082 TTGTGTGGGTGTGAAGTGGA 59.379 50.000 0.00 0.00 0.00 4.02
576 617 0.621082 TGTGTGGGTGTGAAGTGGAA 59.379 50.000 0.00 0.00 0.00 3.53
577 618 1.004862 TGTGTGGGTGTGAAGTGGAAA 59.995 47.619 0.00 0.00 0.00 3.13
578 619 2.096248 GTGTGGGTGTGAAGTGGAAAA 58.904 47.619 0.00 0.00 0.00 2.29
579 620 2.494073 GTGTGGGTGTGAAGTGGAAAAA 59.506 45.455 0.00 0.00 0.00 1.94
580 621 3.132111 GTGTGGGTGTGAAGTGGAAAAAT 59.868 43.478 0.00 0.00 0.00 1.82
581 622 3.383185 TGTGGGTGTGAAGTGGAAAAATC 59.617 43.478 0.00 0.00 0.00 2.17
582 623 2.962421 TGGGTGTGAAGTGGAAAAATCC 59.038 45.455 0.00 0.00 0.00 3.01
583 624 2.299013 GGGTGTGAAGTGGAAAAATCCC 59.701 50.000 0.00 0.00 0.00 3.85
584 625 2.030274 GGTGTGAAGTGGAAAAATCCCG 60.030 50.000 0.00 0.00 0.00 5.14
585 626 2.621526 GTGTGAAGTGGAAAAATCCCGT 59.378 45.455 0.00 0.00 0.00 5.28
586 627 3.067601 GTGTGAAGTGGAAAAATCCCGTT 59.932 43.478 0.00 0.00 0.00 4.44
587 628 3.316868 TGTGAAGTGGAAAAATCCCGTTC 59.683 43.478 0.00 0.00 0.00 3.95
588 629 3.568430 GTGAAGTGGAAAAATCCCGTTCT 59.432 43.478 7.44 0.00 0.00 3.01
589 630 3.568007 TGAAGTGGAAAAATCCCGTTCTG 59.432 43.478 7.44 0.00 0.00 3.02
590 631 2.514803 AGTGGAAAAATCCCGTTCTGG 58.485 47.619 0.00 0.00 37.55 3.86
599 640 4.003788 CCGTTCTGGGTCGCAGGT 62.004 66.667 16.21 0.00 0.00 4.00
600 641 2.030562 CGTTCTGGGTCGCAGGTT 59.969 61.111 16.21 0.00 0.00 3.50
601 642 2.027625 CGTTCTGGGTCGCAGGTTC 61.028 63.158 16.21 6.88 0.00 3.62
602 643 1.070786 GTTCTGGGTCGCAGGTTCA 59.929 57.895 16.21 0.00 0.00 3.18
603 644 0.321653 GTTCTGGGTCGCAGGTTCAT 60.322 55.000 16.21 0.00 0.00 2.57
604 645 0.321564 TTCTGGGTCGCAGGTTCATG 60.322 55.000 16.21 0.00 0.00 3.07
605 646 1.003355 CTGGGTCGCAGGTTCATGT 60.003 57.895 9.02 0.00 0.00 3.21
606 647 1.003839 TGGGTCGCAGGTTCATGTC 60.004 57.895 0.00 0.00 0.00 3.06
607 648 1.745489 GGGTCGCAGGTTCATGTCC 60.745 63.158 0.00 0.00 0.00 4.02
608 649 1.296715 GGTCGCAGGTTCATGTCCT 59.703 57.895 6.43 6.43 35.45 3.85
616 657 3.733337 CAGGTTCATGTCCTGCTATACC 58.267 50.000 20.21 0.00 44.46 2.73
617 658 3.134623 CAGGTTCATGTCCTGCTATACCA 59.865 47.826 20.21 0.00 44.46 3.25
618 659 3.780294 AGGTTCATGTCCTGCTATACCAA 59.220 43.478 10.43 0.00 33.62 3.67
619 660 4.227300 AGGTTCATGTCCTGCTATACCAAA 59.773 41.667 10.43 0.00 33.62 3.28
620 661 4.947388 GGTTCATGTCCTGCTATACCAAAA 59.053 41.667 0.00 0.00 0.00 2.44
621 662 5.417580 GGTTCATGTCCTGCTATACCAAAAA 59.582 40.000 0.00 0.00 0.00 1.94
662 703 2.826128 TCTACTCATCGTTGGACTGCTT 59.174 45.455 0.00 0.00 0.00 3.91
676 717 1.000955 ACTGCTTAGTTCCACACTCGG 59.999 52.381 0.00 0.00 36.88 4.63
684 725 0.106918 TTCCACACTCGGCAAAGGTT 60.107 50.000 0.00 0.00 0.00 3.50
685 726 0.817634 TCCACACTCGGCAAAGGTTG 60.818 55.000 0.00 0.00 0.00 3.77
694 735 0.820871 GGCAAAGGTTGTTGGACACA 59.179 50.000 0.00 0.00 0.00 3.72
697 738 2.802774 GCAAAGGTTGTTGGACACATGG 60.803 50.000 0.00 0.00 34.43 3.66
703 744 0.106769 TGTTGGACACATGGCACTGT 60.107 50.000 0.00 0.00 0.00 3.55
705 746 1.031235 TTGGACACATGGCACTGTTG 58.969 50.000 0.00 0.00 0.00 3.33
711 752 2.032799 ACACATGGCACTGTTGTTAACG 59.967 45.455 0.26 0.00 0.00 3.18
712 753 1.606668 ACATGGCACTGTTGTTAACGG 59.393 47.619 0.26 0.00 43.50 4.44
715 756 1.082366 GCACTGTTGTTAACGGCCG 60.082 57.895 26.86 26.86 41.56 6.13
722 763 0.662085 TTGTTAACGGCCGTTTCACC 59.338 50.000 44.79 28.85 39.31 4.02
738 779 5.458015 GTTTCACCTAATGTGGTAGTTTGC 58.542 41.667 0.00 0.00 45.48 3.68
740 781 2.418628 CACCTAATGTGGTAGTTTGCCG 59.581 50.000 0.00 0.00 41.52 5.69
741 782 2.303600 ACCTAATGTGGTAGTTTGCCGA 59.696 45.455 0.00 0.00 38.79 5.54
743 784 2.851263 AATGTGGTAGTTTGCCGAGA 57.149 45.000 0.00 0.00 0.00 4.04
763 804 3.566322 AGATCTCGTATTCTGGAACTCGG 59.434 47.826 0.00 0.00 0.00 4.63
781 822 4.644685 ACTCGGCAATGGCTATTTAAATGT 59.355 37.500 11.05 0.00 40.87 2.71
785 826 5.580297 CGGCAATGGCTATTTAAATGTTTGT 59.420 36.000 11.05 0.00 40.87 2.83
788 829 6.237808 GCAATGGCTATTTAAATGTTTGTCGG 60.238 38.462 11.05 0.00 36.96 4.79
791 832 5.099575 GGCTATTTAAATGTTTGTCGGGTG 58.900 41.667 11.05 0.00 0.00 4.61
808 849 3.487372 GGGTGCCCAATAATAGGAACTC 58.513 50.000 1.66 0.00 36.41 3.01
810 851 3.139077 GTGCCCAATAATAGGAACTCGG 58.861 50.000 0.00 0.00 41.75 4.63
811 852 2.152016 GCCCAATAATAGGAACTCGGC 58.848 52.381 0.00 0.00 41.75 5.54
821 862 5.924475 ATAGGAACTCGGCGAAATTAATG 57.076 39.130 12.13 0.00 41.75 1.90
825 866 4.970003 GGAACTCGGCGAAATTAATGATTG 59.030 41.667 12.13 0.00 0.00 2.67
827 868 4.908736 ACTCGGCGAAATTAATGATTGTG 58.091 39.130 12.13 0.00 0.00 3.33
831 872 2.788786 GCGAAATTAATGATTGTGGGCG 59.211 45.455 0.00 0.00 0.00 6.13
855 896 1.000506 GTCCAGCCGAGTACTGTTTGA 59.999 52.381 0.00 0.00 33.09 2.69
857 898 1.270094 CCAGCCGAGTACTGTTTGACA 60.270 52.381 0.00 0.00 33.09 3.58
864 905 3.181774 CGAGTACTGTTTGACAAGAACGG 59.818 47.826 0.00 0.00 38.90 4.44
866 907 4.761975 AGTACTGTTTGACAAGAACGGAA 58.238 39.130 0.00 0.00 36.96 4.30
870 911 3.601435 TGTTTGACAAGAACGGAACTCA 58.399 40.909 0.00 0.00 0.00 3.41
878 919 0.944386 GAACGGAACTCAGCAAGCAA 59.056 50.000 0.00 0.00 0.00 3.91
880 921 1.388547 ACGGAACTCAGCAAGCAAAA 58.611 45.000 0.00 0.00 0.00 2.44
881 922 1.956477 ACGGAACTCAGCAAGCAAAAT 59.044 42.857 0.00 0.00 0.00 1.82
891 932 1.421382 CAAGCAAAATGCCGAGTTGG 58.579 50.000 0.00 0.00 46.52 3.77
892 933 0.318120 AAGCAAAATGCCGAGTTGGG 59.682 50.000 0.00 0.00 46.52 4.12
893 934 0.539438 AGCAAAATGCCGAGTTGGGA 60.539 50.000 0.00 0.00 46.52 4.37
894 935 0.316841 GCAAAATGCCGAGTTGGGAA 59.683 50.000 0.00 0.00 43.68 3.97
895 936 1.934849 GCAAAATGCCGAGTTGGGAAC 60.935 52.381 0.00 0.00 43.68 3.62
896 937 1.613437 CAAAATGCCGAGTTGGGAACT 59.387 47.619 0.00 0.00 43.68 3.01
916 965 3.233355 GGTGAGTTCAGCGGTTCAT 57.767 52.632 0.00 0.00 34.50 2.57
920 969 2.412089 GTGAGTTCAGCGGTTCATGTAC 59.588 50.000 0.00 0.00 0.00 2.90
939 988 3.721087 ACTGGTTAGGACTTCCATTGG 57.279 47.619 0.00 0.00 38.89 3.16
981 1030 7.745620 AGTTGAGTTAACCTACATTCCTTTG 57.254 36.000 0.88 0.00 40.24 2.77
1015 1064 1.135489 GTGTCATGCTCATGCTGTTGG 60.135 52.381 5.04 0.00 38.65 3.77
1019 1068 1.035932 ATGCTCATGCTGTTGGAGGC 61.036 55.000 0.00 0.00 40.48 4.70
1020 1069 2.413142 GCTCATGCTGTTGGAGGCC 61.413 63.158 0.00 0.00 36.03 5.19
1021 1070 1.751927 CTCATGCTGTTGGAGGCCC 60.752 63.158 0.00 0.00 0.00 5.80
1022 1071 2.036098 CATGCTGTTGGAGGCCCA 59.964 61.111 0.00 0.00 41.64 5.36
1023 1072 1.380785 CATGCTGTTGGAGGCCCAT 60.381 57.895 0.00 0.00 43.12 4.00
1024 1073 0.974010 CATGCTGTTGGAGGCCCATT 60.974 55.000 0.00 0.00 43.12 3.16
1025 1074 0.685458 ATGCTGTTGGAGGCCCATTC 60.685 55.000 0.00 0.00 43.12 2.67
1026 1075 2.054453 GCTGTTGGAGGCCCATTCC 61.054 63.158 0.00 0.00 43.12 3.01
1027 1076 1.380380 CTGTTGGAGGCCCATTCCC 60.380 63.158 7.04 0.00 43.12 3.97
1028 1077 1.856873 TGTTGGAGGCCCATTCCCT 60.857 57.895 7.04 0.00 43.12 4.20
1029 1078 1.076705 GTTGGAGGCCCATTCCCTC 60.077 63.158 7.04 0.00 46.54 4.30
1032 1081 3.090532 GAGGCCCATTCCCTCGGT 61.091 66.667 0.00 0.00 39.50 4.69
1033 1082 3.406595 GAGGCCCATTCCCTCGGTG 62.407 68.421 0.00 0.00 39.50 4.94
1034 1083 4.506255 GGCCCATTCCCTCGGTGG 62.506 72.222 0.00 0.00 0.00 4.61
1036 1085 4.506255 CCCATTCCCTCGGTGGCC 62.506 72.222 0.00 0.00 0.00 5.36
1037 1086 4.506255 CCATTCCCTCGGTGGCCC 62.506 72.222 0.00 0.00 0.00 5.80
1038 1087 3.727258 CATTCCCTCGGTGGCCCA 61.727 66.667 0.00 0.00 0.00 5.36
1039 1088 2.696125 ATTCCCTCGGTGGCCCAT 60.696 61.111 0.00 0.00 0.00 4.00
1040 1089 2.316586 ATTCCCTCGGTGGCCCATT 61.317 57.895 0.00 0.00 0.00 3.16
1041 1090 2.572333 ATTCCCTCGGTGGCCCATTG 62.572 60.000 0.00 0.00 0.00 2.82
1042 1091 4.820744 CCCTCGGTGGCCCATTGG 62.821 72.222 0.00 0.00 0.00 3.16
1084 1133 1.073722 TGCCTGCTCCTTCACTTGG 59.926 57.895 0.00 0.00 0.00 3.61
1111 1160 1.627864 GATCCAGCTCTCCTACTCCC 58.372 60.000 0.00 0.00 0.00 4.30
1117 1166 1.894756 CTCTCCTACTCCCTCGCCG 60.895 68.421 0.00 0.00 0.00 6.46
1170 1219 2.439701 TCCTCGGTACTGCTCCGG 60.440 66.667 0.00 0.00 46.82 5.14
1382 1431 3.713867 GGTACCTGGACCTCTCCTT 57.286 57.895 4.06 0.00 37.48 3.36
1393 1442 2.037772 GACCTCTCCTTCAACAGCTTCA 59.962 50.000 0.00 0.00 0.00 3.02
1401 1450 1.487482 TCAACAGCTTCAACGAGTCG 58.513 50.000 11.85 11.85 0.00 4.18
1470 1519 1.254954 ACCTGTCCTACACCGACTTC 58.745 55.000 0.00 0.00 0.00 3.01
1471 1520 0.531200 CCTGTCCTACACCGACTTCC 59.469 60.000 0.00 0.00 0.00 3.46
1472 1521 0.170561 CTGTCCTACACCGACTTCCG 59.829 60.000 0.00 0.00 38.18 4.30
1506 1555 3.537874 GGGATACGGCGGCTCAGT 61.538 66.667 13.24 0.00 37.60 3.41
1521 1570 3.742433 CTCAGTAAGCTGGTATCCCTG 57.258 52.381 0.00 0.00 42.78 4.45
1524 1573 2.103263 CAGTAAGCTGGTATCCCTGGAC 59.897 54.545 0.00 0.00 39.01 4.02
1533 1582 2.355818 GGTATCCCTGGACTTCACCAAC 60.356 54.545 0.00 0.00 39.59 3.77
1611 1660 1.068250 GCCCATCGTAGAGCCAGAC 59.932 63.158 0.00 0.00 43.63 3.51
1626 1675 3.991291 AGCCAGACATTGGATCATTCGTC 60.991 47.826 0.00 0.00 43.77 4.20
1739 1788 1.345741 TCCACAGCTTCAGGTTCTCAG 59.654 52.381 0.00 0.00 0.00 3.35
1740 1789 1.155042 CACAGCTTCAGGTTCTCAGC 58.845 55.000 0.00 0.00 0.00 4.26
1767 1816 0.687354 ATACCCACATCGATGCTCCC 59.313 55.000 25.11 0.00 0.00 4.30
1794 1843 2.304470 TGAATCCTTGTCCACCATTCGA 59.696 45.455 0.00 0.00 0.00 3.71
1871 1920 2.437413 CTTTGCTGACTTACCTTCCCC 58.563 52.381 0.00 0.00 0.00 4.81
1917 1966 2.221299 CCTCCAAGGACGGTTCCCA 61.221 63.158 0.00 0.00 44.10 4.37
1937 1986 4.197750 CCAATGAGGATCTTCCAGAACAG 58.802 47.826 1.90 0.00 39.61 3.16
2009 2058 5.591472 TGCTTCCCAATTTCTCATCACATAG 59.409 40.000 0.00 0.00 0.00 2.23
2084 2133 6.785337 TCCGAGGTCAATAAGTAATCTCAA 57.215 37.500 0.00 0.00 0.00 3.02
2272 2322 2.027192 TCTCCAACTGTGGGTTATCTGC 60.027 50.000 0.14 0.00 46.01 4.26
2301 2351 4.695606 ACCTTCCTTCATAGGTAACCTCA 58.304 43.478 0.00 0.00 42.87 3.86
2315 2365 7.563724 AGGTAACCTCAAGAACCTAATTACA 57.436 36.000 0.00 0.00 40.57 2.41
2459 2509 6.230472 GTTCTTCAAAATGCCCAACCTATTT 58.770 36.000 0.00 0.00 0.00 1.40
2501 2551 3.118738 ACAAGCTTTCCGTAGTAGATGGG 60.119 47.826 0.00 0.00 34.56 4.00
2504 2554 2.036089 GCTTTCCGTAGTAGATGGGGAG 59.964 54.545 0.00 0.00 34.56 4.30
2518 2568 6.332976 AGATGGGGAGTACAATTCTTCATT 57.667 37.500 0.00 0.00 0.00 2.57
2552 2602 9.965902 ATCCAAAACTTTGATACTCTATGTCTT 57.034 29.630 3.72 0.00 40.55 3.01
2563 2613 8.355913 TGATACTCTATGTCTTGCATCTTGTAG 58.644 37.037 0.00 0.00 38.94 2.74
2571 2621 4.151335 GTCTTGCATCTTGTAGCATATCCG 59.849 45.833 0.00 0.00 40.94 4.18
2598 2648 4.227300 TCCCTAATACCTTGAAGCACATGT 59.773 41.667 0.00 0.00 0.00 3.21
2601 2651 7.291416 TCCCTAATACCTTGAAGCACATGTATA 59.709 37.037 0.00 0.00 31.34 1.47
2602 2652 7.936847 CCCTAATACCTTGAAGCACATGTATAA 59.063 37.037 0.00 0.00 31.34 0.98
2621 2671 6.643770 TGTATAACGTTGAAGTTCTTGACCTC 59.356 38.462 11.99 0.00 35.70 3.85
2674 2724 1.963515 GTGGGCATGGGATAATTGGAC 59.036 52.381 0.00 0.00 0.00 4.02
2804 2854 6.215636 ACCTATTTGAAGGGCCTATACCTATG 59.784 42.308 6.41 0.00 41.32 2.23
3023 3073 5.509498 TCCATCCCTTCTTGTTTAATGGAG 58.491 41.667 0.00 0.00 37.01 3.86
3054 3104 6.795399 AGTCGCCTCAATGTATTAAATTTGG 58.205 36.000 0.00 0.00 0.00 3.28
3076 3126 7.847711 TGGAAGGAAATAAACTTCATGGAAA 57.152 32.000 6.73 0.00 43.70 3.13
3092 3142 7.111247 TCATGGAAAATTACCAAATAGCCTG 57.889 36.000 8.09 2.05 40.93 4.85
3125 3175 4.156556 TGTGCATTTGAGGCATTAGACTTC 59.843 41.667 0.00 0.00 44.11 3.01
3150 3200 7.550551 TCAGTGATAATCAGATTGAAGGACAAC 59.449 37.037 5.85 0.00 41.52 3.32
3195 3245 5.596361 TGCAAAGACTTGGAGGTTTTTGATA 59.404 36.000 12.53 1.51 41.05 2.15
3279 3329 5.367945 AGTCCTTGTTCTAAAGTCCAACA 57.632 39.130 0.00 0.00 0.00 3.33
3287 3337 6.126409 TGTTCTAAAGTCCAACAGGTTCATT 58.874 36.000 0.00 0.00 0.00 2.57
3337 3387 9.342308 AGAAGATCAAAATAGTTGTGAGTTTGA 57.658 29.630 0.00 1.37 41.12 2.69
3370 3420 6.306356 CGAATTATTGACTTGGCTTCAAACAG 59.694 38.462 1.78 0.00 36.57 3.16
3457 3507 3.201353 TGAGACGTTGGTCATGGAAAA 57.799 42.857 0.00 0.00 45.92 2.29
3517 3567 5.125356 CACTGCCATCACATACAAAGGATA 58.875 41.667 0.00 0.00 0.00 2.59
3661 3711 3.202818 TCACATAATGCCCTCATTGGACT 59.797 43.478 1.17 0.00 42.50 3.85
3728 3778 7.814264 AGACATGTCTTCAAATGAACTTTCT 57.186 32.000 22.89 0.00 36.31 2.52
3742 3792 4.080695 TGAACTTTCTGGAGAGATCCCATG 60.081 45.833 0.00 0.00 32.49 3.66
3771 3821 4.588106 TGGCATCATTGGACTTTCTTTCAA 59.412 37.500 0.00 0.00 0.00 2.69
3773 3823 5.579511 GGCATCATTGGACTTTCTTTCAATG 59.420 40.000 8.16 8.16 44.41 2.82
3841 3891 3.008375 TCCCACTTCTTGACATTCTCTGG 59.992 47.826 0.00 0.00 0.00 3.86
3871 3921 8.830915 TCATTTTTAGGAAACATTGGCCTATA 57.169 30.769 3.32 0.00 34.47 1.31
3878 3928 4.653801 GGAAACATTGGCCTATATGGGTTT 59.346 41.667 3.32 8.62 36.00 3.27
3887 3937 3.560068 GCCTATATGGGTTTCAAGTGTCG 59.440 47.826 7.00 0.00 36.00 4.35
3918 3968 3.953712 ACAACATGACACCAGATACGA 57.046 42.857 0.00 0.00 0.00 3.43
3920 3970 5.592104 ACAACATGACACCAGATACGATA 57.408 39.130 0.00 0.00 0.00 2.92
3922 3972 5.105513 ACAACATGACACCAGATACGATACA 60.106 40.000 0.00 0.00 0.00 2.29
3923 3973 5.791336 ACATGACACCAGATACGATACAT 57.209 39.130 0.00 0.00 0.00 2.29
3926 3976 5.438761 TGACACCAGATACGATACATCAG 57.561 43.478 0.00 0.00 0.00 2.90
3927 3977 4.887655 TGACACCAGATACGATACATCAGT 59.112 41.667 0.00 0.00 0.00 3.41
3928 3978 5.008712 TGACACCAGATACGATACATCAGTC 59.991 44.000 0.00 0.00 0.00 3.51
3968 4021 7.759489 AGACATTGTACTATTCCTTTTTGCA 57.241 32.000 0.00 0.00 0.00 4.08
4073 4127 1.561643 GACCTGTCTCTCATGGTCCA 58.438 55.000 0.00 0.00 37.86 4.02
4227 4284 1.749286 GCAACCGGCCATATGTTACCT 60.749 52.381 0.00 0.00 36.11 3.08
4242 4299 3.184628 GTTACCTTAGGTACCCCTGGTT 58.815 50.000 20.67 9.16 42.67 3.67
4294 4363 2.024414 GGCAGAACCATAACCATCACC 58.976 52.381 0.00 0.00 38.86 4.02
4398 4469 4.349048 AGGACGTAGGGTTTTACCTCTTTT 59.651 41.667 0.00 0.00 42.09 2.27
4453 4525 3.149005 TGTTCCCTGTTACCCATTGAC 57.851 47.619 0.00 0.00 0.00 3.18
4469 4541 3.685139 TTGACTCCAAGATCCACAGTC 57.315 47.619 5.24 5.24 35.11 3.51
4470 4542 2.608623 TGACTCCAAGATCCACAGTCA 58.391 47.619 9.30 9.30 40.89 3.41
4503 4580 1.134788 CCGAGATCTGCCGGTTTTAGT 60.135 52.381 13.39 0.00 40.78 2.24
4562 4640 2.538512 TCATCAAGGATCGATGGCTG 57.461 50.000 0.54 0.00 40.58 4.85
4621 4699 3.502123 TTCATTCCCGGTCAACTCTTT 57.498 42.857 0.00 0.00 0.00 2.52
4655 4733 3.057548 TGCTGCACGCCAATCAGG 61.058 61.111 0.00 0.00 38.05 3.86
4691 4769 3.172106 TCGGCAACTTCACCCCCA 61.172 61.111 0.00 0.00 0.00 4.96
4692 4770 2.035626 CGGCAACTTCACCCCCAT 59.964 61.111 0.00 0.00 0.00 4.00
4760 4839 4.263112 GGGGAGATCTTATTCTTACAGGGC 60.263 50.000 0.00 0.00 0.00 5.19
4762 4841 5.072464 GGGAGATCTTATTCTTACAGGGCTT 59.928 44.000 0.00 0.00 0.00 4.35
4763 4842 6.227522 GGAGATCTTATTCTTACAGGGCTTC 58.772 44.000 0.00 0.00 0.00 3.86
4787 4866 1.561542 CTTCACCTGAAGGGCCTACAT 59.438 52.381 6.41 0.00 45.79 2.29
4793 4872 2.982488 CCTGAAGGGCCTACATATCCTT 59.018 50.000 6.41 0.00 41.78 3.36
4811 4890 2.347731 CTTAGGCTTTGACTTCGGGTC 58.652 52.381 0.00 3.18 44.70 4.46
4826 4905 3.007323 GTCCGGCTTACCCCACCT 61.007 66.667 0.00 0.00 0.00 4.00
4827 4906 2.204029 TCCGGCTTACCCCACCTT 60.204 61.111 0.00 0.00 0.00 3.50
4869 4948 1.964608 CTGGCCTTGAGCTCGGATCA 61.965 60.000 9.64 6.60 43.05 2.92
4870 4949 1.227497 GGCCTTGAGCTCGGATCAG 60.227 63.158 9.64 0.00 43.05 2.90
4877 4956 2.228925 TGAGCTCGGATCAGATCTCTG 58.771 52.381 21.81 0.56 45.08 3.35
4879 4958 0.672889 GCTCGGATCAGATCTCTGCA 59.327 55.000 10.36 0.00 43.46 4.41
4917 4996 2.511373 CTTGGCCGCGCATGACTA 60.511 61.111 8.75 0.00 0.00 2.59
4946 5025 1.377366 TTCAAACGCTCCCAACGCAA 61.377 50.000 0.00 0.00 0.00 4.85
4993 5072 1.135112 TGTCAGAACATGGATCCGACG 60.135 52.381 7.39 0.00 0.00 5.12
5005 5084 1.511318 ATCCGACGGATCTCTCGCTG 61.511 60.000 23.78 0.00 38.09 5.18
5033 5112 3.954904 CGGGATACTAGATCGGATCCAAT 59.045 47.826 13.41 0.00 39.79 3.16
5070 5149 1.068250 GCCAGTCCTCGGTCTATGC 59.932 63.158 0.00 0.00 0.00 3.14
5071 5150 1.742768 CCAGTCCTCGGTCTATGCC 59.257 63.158 0.00 0.00 0.00 4.40
5077 5156 1.051812 CCTCGGTCTATGCCCAGATT 58.948 55.000 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.375908 GAGACCGATGCTTGGCACA 60.376 57.895 0.00 0.00 43.04 4.57
1 2 0.674895 AAGAGACCGATGCTTGGCAC 60.675 55.000 0.00 0.00 43.04 5.01
2 3 0.674581 CAAGAGACCGATGCTTGGCA 60.675 55.000 0.00 0.00 44.86 4.92
8 9 1.084370 CCCGAACAAGAGACCGATGC 61.084 60.000 0.00 0.00 0.00 3.91
13 14 2.046217 GGGCCCGAACAAGAGACC 60.046 66.667 5.69 0.00 0.00 3.85
36 39 3.321648 ACCGCCTCCACTGCATCA 61.322 61.111 0.00 0.00 0.00 3.07
56 59 1.672441 CCAAAATGATGGTTGTGGGCG 60.672 52.381 0.00 0.00 35.65 6.13
57 60 1.622811 TCCAAAATGATGGTTGTGGGC 59.377 47.619 0.00 0.00 41.46 5.36
58 61 3.514706 TCATCCAAAATGATGGTTGTGGG 59.485 43.478 1.56 0.00 41.97 4.61
59 62 4.497300 GTCATCCAAAATGATGGTTGTGG 58.503 43.478 1.56 0.00 41.97 4.17
60 63 4.082841 TCGTCATCCAAAATGATGGTTGTG 60.083 41.667 7.25 3.88 41.97 3.33
73 83 2.615240 CCACCATCTTGTCGTCATCCAA 60.615 50.000 0.00 0.00 0.00 3.53
74 84 1.066215 CCACCATCTTGTCGTCATCCA 60.066 52.381 0.00 0.00 0.00 3.41
78 88 1.675714 GCATCCACCATCTTGTCGTCA 60.676 52.381 0.00 0.00 0.00 4.35
81 91 1.012086 CAGCATCCACCATCTTGTCG 58.988 55.000 0.00 0.00 0.00 4.35
85 95 0.745845 GCGTCAGCATCCACCATCTT 60.746 55.000 0.00 0.00 44.35 2.40
87 97 3.414272 GCGTCAGCATCCACCATC 58.586 61.111 0.00 0.00 44.35 3.51
102 112 1.469917 CGCTATTTTCTGCATTGGCG 58.530 50.000 0.00 0.00 45.35 5.69
107 117 1.402968 CACCTGCGCTATTTTCTGCAT 59.597 47.619 9.73 0.00 36.64 3.96
115 125 0.464373 CATCCACCACCTGCGCTATT 60.464 55.000 9.73 0.00 0.00 1.73
116 126 1.146930 CATCCACCACCTGCGCTAT 59.853 57.895 9.73 0.00 0.00 2.97
117 127 2.584064 CATCCACCACCTGCGCTA 59.416 61.111 9.73 0.00 0.00 4.26
118 128 4.415150 CCATCCACCACCTGCGCT 62.415 66.667 9.73 0.00 0.00 5.92
124 134 2.023414 TATCGTCGCCATCCACCACC 62.023 60.000 0.00 0.00 0.00 4.61
137 147 2.546321 CGCCGCTGCATTATCGTC 59.454 61.111 0.00 0.00 37.32 4.20
142 152 4.089239 TCCACCGCCGCTGCATTA 62.089 61.111 0.00 0.00 37.32 1.90
150 160 4.838152 CCACCATCTCCACCGCCG 62.838 72.222 0.00 0.00 0.00 6.46
151 161 2.311688 CTACCACCATCTCCACCGCC 62.312 65.000 0.00 0.00 0.00 6.13
155 165 1.135083 CACGTCTACCACCATCTCCAC 60.135 57.143 0.00 0.00 0.00 4.02
167 177 2.202623 CAGCCGAGGCACGTCTAC 60.203 66.667 17.18 0.00 44.88 2.59
194 204 5.873179 TGTACCAAAGAATTTCATCGGAC 57.127 39.130 0.00 0.00 35.03 4.79
198 208 9.353999 GTTACCATTGTACCAAAGAATTTCATC 57.646 33.333 0.00 0.00 35.03 2.92
220 230 7.042320 GAGCATCTGCAATTTCTTTTGTTAC 57.958 36.000 4.79 0.00 45.16 2.50
238 248 4.023365 GCCTCCATATTTTGTGAGAGCATC 60.023 45.833 0.00 0.00 0.00 3.91
241 251 3.549794 AGCCTCCATATTTTGTGAGAGC 58.450 45.455 0.00 0.00 0.00 4.09
248 258 5.334414 GCTTCGTCATAGCCTCCATATTTTG 60.334 44.000 0.00 0.00 32.45 2.44
278 288 1.586154 GGTTGTTGCGGGTGATGAGG 61.586 60.000 0.00 0.00 0.00 3.86
286 296 2.672996 CTCCAGGGTTGTTGCGGG 60.673 66.667 0.00 0.00 0.00 6.13
289 299 0.610232 ATGAGCTCCAGGGTTGTTGC 60.610 55.000 12.15 0.00 0.00 4.17
300 310 1.189752 TCTCTGTGGACATGAGCTCC 58.810 55.000 12.15 0.00 0.00 4.70
322 332 1.924320 AACCTCTCGACGCGGAAGAG 61.924 60.000 20.99 20.99 0.00 2.85
333 343 0.942410 TTCGCCGACAAAACCTCTCG 60.942 55.000 0.00 0.00 0.00 4.04
339 349 4.386652 TCATAAGTAGTTCGCCGACAAAAC 59.613 41.667 0.00 0.00 0.00 2.43
342 352 3.853831 TCATAAGTAGTTCGCCGACAA 57.146 42.857 0.00 0.00 0.00 3.18
380 390 8.133627 GCATAGAAAGTTCACAAGCATCATATT 58.866 33.333 0.00 0.00 0.00 1.28
381 391 7.501559 AGCATAGAAAGTTCACAAGCATCATAT 59.498 33.333 0.00 0.00 0.00 1.78
399 409 8.540388 AGAAGTAACATAACAAGGAGCATAGAA 58.460 33.333 0.00 0.00 0.00 2.10
448 458 9.234827 CATCAACACCACAATCACCATATATAT 57.765 33.333 0.00 0.00 0.00 0.86
450 460 7.289310 TCATCAACACCACAATCACCATATAT 58.711 34.615 0.00 0.00 0.00 0.86
451 461 6.657875 TCATCAACACCACAATCACCATATA 58.342 36.000 0.00 0.00 0.00 0.86
452 462 5.508567 TCATCAACACCACAATCACCATAT 58.491 37.500 0.00 0.00 0.00 1.78
453 463 4.916183 TCATCAACACCACAATCACCATA 58.084 39.130 0.00 0.00 0.00 2.74
454 464 3.765381 TCATCAACACCACAATCACCAT 58.235 40.909 0.00 0.00 0.00 3.55
455 465 3.220674 TCATCAACACCACAATCACCA 57.779 42.857 0.00 0.00 0.00 4.17
456 466 3.758023 TGATCATCAACACCACAATCACC 59.242 43.478 0.00 0.00 0.00 4.02
460 470 3.686241 CGAGTGATCATCAACACCACAAT 59.314 43.478 0.00 0.00 37.69 2.71
461 471 3.066380 CGAGTGATCATCAACACCACAA 58.934 45.455 0.00 0.00 37.69 3.33
463 473 2.668457 GTCGAGTGATCATCAACACCAC 59.332 50.000 0.00 0.00 37.69 4.16
496 537 4.404394 CCAAGTTCCCACTTACCAAAACTT 59.596 41.667 0.00 0.00 41.69 2.66
508 549 2.365293 ACATTTTCTGCCAAGTTCCCAC 59.635 45.455 0.00 0.00 0.00 4.61
509 550 2.364970 CACATTTTCTGCCAAGTTCCCA 59.635 45.455 0.00 0.00 0.00 4.37
510 551 2.867647 GCACATTTTCTGCCAAGTTCCC 60.868 50.000 0.00 0.00 0.00 3.97
534 575 1.680338 GGGATTTGGGGTTCGAGATG 58.320 55.000 0.00 0.00 0.00 2.90
535 576 0.180406 CGGGATTTGGGGTTCGAGAT 59.820 55.000 0.00 0.00 0.00 2.75
537 578 0.180406 ATCGGGATTTGGGGTTCGAG 59.820 55.000 0.00 0.00 0.00 4.04
540 581 1.476488 CACAATCGGGATTTGGGGTTC 59.524 52.381 0.00 0.00 0.00 3.62
547 588 1.203001 ACACCCACACAATCGGGATTT 60.203 47.619 0.45 0.00 46.34 2.17
548 589 0.404040 ACACCCACACAATCGGGATT 59.596 50.000 0.45 0.00 46.34 3.01
549 590 0.322456 CACACCCACACAATCGGGAT 60.322 55.000 0.45 0.00 46.34 3.85
550 591 1.072332 CACACCCACACAATCGGGA 59.928 57.895 0.45 0.00 46.34 5.14
552 593 0.874390 CTTCACACCCACACAATCGG 59.126 55.000 0.00 0.00 0.00 4.18
553 594 1.264020 CACTTCACACCCACACAATCG 59.736 52.381 0.00 0.00 0.00 3.34
554 595 1.608590 CCACTTCACACCCACACAATC 59.391 52.381 0.00 0.00 0.00 2.67
555 596 1.214175 TCCACTTCACACCCACACAAT 59.786 47.619 0.00 0.00 0.00 2.71
556 597 0.621082 TCCACTTCACACCCACACAA 59.379 50.000 0.00 0.00 0.00 3.33
557 598 0.621082 TTCCACTTCACACCCACACA 59.379 50.000 0.00 0.00 0.00 3.72
558 599 1.757682 TTTCCACTTCACACCCACAC 58.242 50.000 0.00 0.00 0.00 3.82
559 600 2.516227 TTTTCCACTTCACACCCACA 57.484 45.000 0.00 0.00 0.00 4.17
560 601 3.243737 GGATTTTTCCACTTCACACCCAC 60.244 47.826 0.00 0.00 0.00 4.61
561 602 2.962421 GGATTTTTCCACTTCACACCCA 59.038 45.455 0.00 0.00 0.00 4.51
562 603 2.299013 GGGATTTTTCCACTTCACACCC 59.701 50.000 0.00 0.00 0.00 4.61
563 604 2.030274 CGGGATTTTTCCACTTCACACC 60.030 50.000 0.00 0.00 0.00 4.16
564 605 2.621526 ACGGGATTTTTCCACTTCACAC 59.378 45.455 0.00 0.00 0.00 3.82
565 606 2.938838 ACGGGATTTTTCCACTTCACA 58.061 42.857 0.00 0.00 0.00 3.58
566 607 3.568430 AGAACGGGATTTTTCCACTTCAC 59.432 43.478 0.00 0.00 0.00 3.18
567 608 3.568007 CAGAACGGGATTTTTCCACTTCA 59.432 43.478 0.00 0.00 0.00 3.02
568 609 3.057526 CCAGAACGGGATTTTTCCACTTC 60.058 47.826 0.00 0.00 0.00 3.01
569 610 2.890945 CCAGAACGGGATTTTTCCACTT 59.109 45.455 0.00 0.00 0.00 3.16
570 611 2.514803 CCAGAACGGGATTTTTCCACT 58.485 47.619 0.00 0.00 0.00 4.00
582 623 3.530910 AACCTGCGACCCAGAACGG 62.531 63.158 0.00 0.00 44.64 4.44
583 624 2.027625 GAACCTGCGACCCAGAACG 61.028 63.158 0.00 0.00 44.64 3.95
584 625 0.321653 ATGAACCTGCGACCCAGAAC 60.322 55.000 0.00 0.00 44.64 3.01
585 626 0.321564 CATGAACCTGCGACCCAGAA 60.322 55.000 0.00 0.00 44.64 3.02
586 627 1.296392 CATGAACCTGCGACCCAGA 59.704 57.895 0.00 0.00 44.64 3.86
587 628 1.003355 ACATGAACCTGCGACCCAG 60.003 57.895 0.00 0.00 41.41 4.45
588 629 1.003839 GACATGAACCTGCGACCCA 60.004 57.895 0.00 0.00 0.00 4.51
589 630 1.745489 GGACATGAACCTGCGACCC 60.745 63.158 0.00 0.00 0.00 4.46
590 631 1.021390 CAGGACATGAACCTGCGACC 61.021 60.000 22.68 0.00 46.30 4.79
591 632 2.460330 CAGGACATGAACCTGCGAC 58.540 57.895 22.68 0.00 46.30 5.19
596 637 3.384168 TGGTATAGCAGGACATGAACCT 58.616 45.455 0.00 4.96 38.40 3.50
597 638 3.838244 TGGTATAGCAGGACATGAACC 57.162 47.619 0.00 2.33 0.00 3.62
598 639 6.509418 TTTTTGGTATAGCAGGACATGAAC 57.491 37.500 0.00 0.00 0.00 3.18
624 665 9.220767 GATGAGTAGAATACAAGAGTGGTTTTT 57.779 33.333 0.00 0.00 46.26 1.94
625 666 7.545965 CGATGAGTAGAATACAAGAGTGGTTTT 59.454 37.037 0.00 0.00 46.26 2.43
626 667 7.036220 CGATGAGTAGAATACAAGAGTGGTTT 58.964 38.462 0.00 0.00 46.26 3.27
627 668 6.153000 ACGATGAGTAGAATACAAGAGTGGTT 59.847 38.462 0.00 0.00 46.26 3.67
628 669 5.652891 ACGATGAGTAGAATACAAGAGTGGT 59.347 40.000 0.00 0.00 46.26 4.16
629 670 6.137794 ACGATGAGTAGAATACAAGAGTGG 57.862 41.667 0.00 0.00 46.26 4.00
630 671 6.473778 CCAACGATGAGTAGAATACAAGAGTG 59.526 42.308 0.00 0.00 46.26 3.51
631 672 6.377429 TCCAACGATGAGTAGAATACAAGAGT 59.623 38.462 0.00 0.00 46.26 3.24
632 673 6.693545 GTCCAACGATGAGTAGAATACAAGAG 59.306 42.308 0.00 0.00 46.26 2.85
633 674 6.377429 AGTCCAACGATGAGTAGAATACAAGA 59.623 38.462 0.00 0.00 46.26 3.02
634 675 6.473778 CAGTCCAACGATGAGTAGAATACAAG 59.526 42.308 0.00 0.00 46.26 3.16
635 676 6.330278 CAGTCCAACGATGAGTAGAATACAA 58.670 40.000 0.00 0.00 46.26 2.41
636 677 5.678871 GCAGTCCAACGATGAGTAGAATACA 60.679 44.000 0.00 0.00 46.26 2.29
637 678 4.740695 GCAGTCCAACGATGAGTAGAATAC 59.259 45.833 0.00 0.00 43.47 1.89
638 679 4.645136 AGCAGTCCAACGATGAGTAGAATA 59.355 41.667 0.00 0.00 0.00 1.75
639 680 3.449018 AGCAGTCCAACGATGAGTAGAAT 59.551 43.478 0.00 0.00 0.00 2.40
640 681 2.826128 AGCAGTCCAACGATGAGTAGAA 59.174 45.455 0.00 0.00 0.00 2.10
641 682 2.447443 AGCAGTCCAACGATGAGTAGA 58.553 47.619 0.00 0.00 0.00 2.59
642 683 2.949451 AGCAGTCCAACGATGAGTAG 57.051 50.000 0.00 0.00 0.00 2.57
648 689 2.301870 TGGAACTAAGCAGTCCAACGAT 59.698 45.455 0.00 0.00 32.29 3.73
649 690 1.689813 TGGAACTAAGCAGTCCAACGA 59.310 47.619 0.00 0.00 32.29 3.85
662 703 1.270625 CCTTTGCCGAGTGTGGAACTA 60.271 52.381 0.00 0.00 40.07 2.24
676 717 2.472816 CATGTGTCCAACAACCTTTGC 58.527 47.619 0.00 0.00 43.61 3.68
684 725 0.106769 ACAGTGCCATGTGTCCAACA 60.107 50.000 0.00 0.00 44.79 3.33
685 726 1.032014 AACAGTGCCATGTGTCCAAC 58.968 50.000 0.00 0.00 32.52 3.77
694 735 0.596082 GCCGTTAACAACAGTGCCAT 59.404 50.000 6.39 0.00 0.00 4.40
697 738 1.082366 CGGCCGTTAACAACAGTGC 60.082 57.895 19.50 0.00 0.00 4.40
703 744 0.662085 GGTGAAACGGCCGTTAACAA 59.338 50.000 41.25 24.29 38.12 2.83
705 746 1.794512 TAGGTGAAACGGCCGTTAAC 58.205 50.000 41.25 36.37 38.12 2.01
722 763 3.857052 TCTCGGCAAACTACCACATTAG 58.143 45.455 0.00 0.00 0.00 1.73
740 781 4.319911 CCGAGTTCCAGAATACGAGATCTC 60.320 50.000 13.05 13.05 0.00 2.75
741 782 3.566322 CCGAGTTCCAGAATACGAGATCT 59.434 47.826 0.00 0.00 0.00 2.75
743 784 2.034812 GCCGAGTTCCAGAATACGAGAT 59.965 50.000 0.00 0.00 0.00 2.75
750 791 1.755179 CCATTGCCGAGTTCCAGAAT 58.245 50.000 0.00 0.00 0.00 2.40
756 797 4.893424 TTAAATAGCCATTGCCGAGTTC 57.107 40.909 0.00 0.00 38.69 3.01
757 798 5.127031 ACATTTAAATAGCCATTGCCGAGTT 59.873 36.000 0.00 0.00 38.69 3.01
763 804 6.237808 CCGACAAACATTTAAATAGCCATTGC 60.238 38.462 0.00 0.00 37.95 3.56
791 832 2.152016 GCCGAGTTCCTATTATTGGGC 58.848 52.381 0.00 0.00 0.00 5.36
808 849 3.371168 CCCACAATCATTAATTTCGCCG 58.629 45.455 0.00 0.00 0.00 6.46
810 851 2.788786 CGCCCACAATCATTAATTTCGC 59.211 45.455 0.00 0.00 0.00 4.70
811 852 4.035017 GTCGCCCACAATCATTAATTTCG 58.965 43.478 0.00 0.00 0.00 3.46
821 862 2.818274 GGACGGTCGCCCACAATC 60.818 66.667 1.43 0.00 0.00 2.67
831 872 2.045131 AGTACTCGGCTGGACGGTC 61.045 63.158 0.00 0.00 0.00 4.79
855 896 2.213499 CTTGCTGAGTTCCGTTCTTGT 58.787 47.619 0.00 0.00 0.00 3.16
857 898 1.230324 GCTTGCTGAGTTCCGTTCTT 58.770 50.000 0.00 0.00 0.00 2.52
864 905 2.064014 GGCATTTTGCTTGCTGAGTTC 58.936 47.619 0.00 0.00 44.28 3.01
866 907 3.900446 GGCATTTTGCTTGCTGAGT 57.100 47.368 0.00 0.00 44.28 3.41
870 911 0.675633 AACTCGGCATTTTGCTTGCT 59.324 45.000 0.00 0.00 44.28 3.91
878 919 3.745723 AGTTCCCAACTCGGCATTT 57.254 47.368 0.00 0.00 37.02 2.32
894 935 1.745320 AACCGCTGAACTCACCGAGT 61.745 55.000 0.00 0.00 45.64 4.18
895 936 1.006102 AACCGCTGAACTCACCGAG 60.006 57.895 0.00 0.00 35.52 4.63
896 937 1.006571 GAACCGCTGAACTCACCGA 60.007 57.895 0.00 0.00 0.00 4.69
906 955 1.808411 AACCAGTACATGAACCGCTG 58.192 50.000 0.00 0.00 0.00 5.18
907 956 2.093658 CCTAACCAGTACATGAACCGCT 60.094 50.000 0.00 0.00 0.00 5.52
909 958 3.194968 AGTCCTAACCAGTACATGAACCG 59.805 47.826 0.00 0.00 0.00 4.44
911 960 5.176592 GGAAGTCCTAACCAGTACATGAAC 58.823 45.833 0.00 0.00 0.00 3.18
916 965 4.019681 CCAATGGAAGTCCTAACCAGTACA 60.020 45.833 0.00 0.00 37.12 2.90
920 969 4.510167 ATCCAATGGAAGTCCTAACCAG 57.490 45.455 5.89 0.00 37.12 4.00
968 1017 5.431765 AGATGTACTGCAAAGGAATGTAGG 58.568 41.667 0.00 0.00 37.35 3.18
981 1030 3.553511 GCATGACACACTAGATGTACTGC 59.446 47.826 15.49 15.49 40.64 4.40
1015 1064 3.090532 ACCGAGGGAATGGGCCTC 61.091 66.667 4.53 0.00 0.00 4.70
1019 1068 4.506255 GGCCACCGAGGGAATGGG 62.506 72.222 0.00 0.00 38.09 4.00
1020 1069 4.506255 GGGCCACCGAGGGAATGG 62.506 72.222 4.39 0.00 38.09 3.16
1021 1070 2.572333 AATGGGCCACCGAGGGAATG 62.572 60.000 9.28 0.00 40.75 2.67
1022 1071 2.316586 AATGGGCCACCGAGGGAAT 61.317 57.895 9.28 0.00 40.75 3.01
1023 1072 2.938798 AATGGGCCACCGAGGGAA 60.939 61.111 9.28 0.00 40.75 3.97
1024 1073 3.727258 CAATGGGCCACCGAGGGA 61.727 66.667 9.28 0.00 40.75 4.20
1025 1074 4.820744 CCAATGGGCCACCGAGGG 62.821 72.222 9.28 1.87 40.75 4.30
1035 1084 4.700448 TGCTGGTGGGCCAATGGG 62.700 66.667 8.40 0.00 45.51 4.00
1036 1085 3.072468 CTGCTGGTGGGCCAATGG 61.072 66.667 8.40 1.64 45.51 3.16
1037 1086 3.766691 GCTGCTGGTGGGCCAATG 61.767 66.667 8.40 2.04 45.51 2.82
1038 1087 4.304413 TGCTGCTGGTGGGCCAAT 62.304 61.111 8.40 0.00 45.51 3.16
1039 1088 4.980702 CTGCTGCTGGTGGGCCAA 62.981 66.667 8.40 0.00 45.51 4.52
1084 1133 3.934962 GAGCTGGATCCCGAGGCC 61.935 72.222 9.90 0.00 0.00 5.19
1117 1166 0.313987 GTAGTTTGGTTGCTGGTGGC 59.686 55.000 0.00 0.00 42.22 5.01
1170 1219 3.491652 GAGAAGGAACGCCGCAGC 61.492 66.667 0.00 0.00 39.96 5.25
1365 1414 2.233305 TGAAGGAGAGGTCCAGGTAC 57.767 55.000 0.00 0.00 46.80 3.34
1382 1431 1.487482 CGACTCGTTGAAGCTGTTGA 58.513 50.000 0.00 0.00 0.00 3.18
1443 1492 3.105283 GGTGTAGGACAGGTTGAGGTAT 58.895 50.000 0.00 0.00 0.00 2.73
1470 1519 0.806102 CGTGTGGTATCTTGCCTCGG 60.806 60.000 0.00 0.00 0.00 4.63
1471 1520 0.806102 CCGTGTGGTATCTTGCCTCG 60.806 60.000 0.00 0.00 0.00 4.63
1472 1521 0.462047 CCCGTGTGGTATCTTGCCTC 60.462 60.000 0.00 0.00 0.00 4.70
1521 1570 5.501156 AGATAAATCCAGTTGGTGAAGTCC 58.499 41.667 0.00 0.00 36.34 3.85
1524 1573 6.824305 ACAAGATAAATCCAGTTGGTGAAG 57.176 37.500 0.00 0.00 36.34 3.02
1533 1582 4.635765 TCGCCTTCAACAAGATAAATCCAG 59.364 41.667 0.00 0.00 0.00 3.86
1611 1660 3.059597 GGTTAGCGACGAATGATCCAATG 60.060 47.826 0.00 0.00 0.00 2.82
1626 1675 6.656307 TCCTTGAGGTTGCTAAGGTTAGCG 62.656 50.000 15.27 0.96 46.08 4.26
1690 1739 1.373748 CAAAGGCACTGCACCATGC 60.374 57.895 2.82 4.58 45.29 4.06
1739 1788 2.158871 TCGATGTGGGTATTTGGTAGGC 60.159 50.000 0.00 0.00 0.00 3.93
1740 1789 3.830744 TCGATGTGGGTATTTGGTAGG 57.169 47.619 0.00 0.00 0.00 3.18
1767 1816 3.573538 TGGTGGACAAGGATTCACAAATG 59.426 43.478 0.00 0.00 32.29 2.32
1794 1843 5.762179 TTAGGTTGATCTTGGTCAGTGAT 57.238 39.130 0.00 0.00 0.00 3.06
1835 1884 2.893489 GCAAAGGACTCTGGAATTTGGT 59.107 45.455 0.00 0.00 32.74 3.67
1871 1920 2.508526 AGGCAAGCTTAAGAACACTGG 58.491 47.619 6.67 0.00 0.00 4.00
1917 1966 5.768980 TTCTGTTCTGGAAGATCCTCATT 57.231 39.130 0.00 0.00 46.36 2.57
1937 1986 4.483476 ACATCAACAGCCGTTAAGTTTC 57.517 40.909 0.00 0.00 32.75 2.78
2084 2133 7.175104 TGCAATACCTACTTTCTTCAAGGATT 58.825 34.615 0.00 0.00 36.72 3.01
2098 2147 3.600388 AGTCAGTTGCTGCAATACCTAC 58.400 45.455 19.11 12.11 0.00 3.18
2328 2378 5.280654 ACTTGACCAGAAAAATTGCATGT 57.719 34.783 0.00 0.00 0.00 3.21
2501 2551 5.221126 GGATGCCAATGAAGAATTGTACTCC 60.221 44.000 0.00 0.00 43.66 3.85
2504 2554 5.581126 TGGATGCCAATGAAGAATTGTAC 57.419 39.130 0.00 0.00 43.66 2.90
2518 2568 3.237746 TCAAAGTTTTGGATGGATGCCA 58.762 40.909 4.89 0.00 38.66 4.92
2552 2602 3.862264 GCTCGGATATGCTACAAGATGCA 60.862 47.826 0.00 0.00 43.67 3.96
2563 2613 3.181474 GGTATTAGGGAGCTCGGATATGC 60.181 52.174 7.83 2.72 0.00 3.14
2571 2621 3.134804 TGCTTCAAGGTATTAGGGAGCTC 59.865 47.826 4.71 4.71 0.00 4.09
2598 2648 6.989659 AGAGGTCAAGAACTTCAACGTTATA 58.010 36.000 0.00 0.00 36.47 0.98
2601 2651 4.120589 GAGAGGTCAAGAACTTCAACGTT 58.879 43.478 0.00 0.00 36.47 3.99
2602 2652 3.132289 TGAGAGGTCAAGAACTTCAACGT 59.868 43.478 0.00 0.00 36.47 3.99
2621 2671 3.429822 GGCCATGGATGTGATTGTTTGAG 60.430 47.826 18.40 0.00 0.00 3.02
2714 2764 4.042934 GGGCCATATCCAATACCACTACTT 59.957 45.833 4.39 0.00 0.00 2.24
2804 2854 3.842925 TTGGTTCTGCGGTCCTGGC 62.843 63.158 9.96 0.00 0.00 4.85
3063 3113 9.435688 GCTATTTGGTAATTTTCCATGAAGTTT 57.564 29.630 0.00 0.00 34.75 2.66
3076 3126 5.951747 TCTTGCTTCAGGCTATTTGGTAATT 59.048 36.000 0.00 0.00 42.39 1.40
3092 3142 3.924686 CCTCAAATGCACAATCTTGCTTC 59.075 43.478 0.00 0.00 43.41 3.86
3125 3175 7.551974 AGTTGTCCTTCAATCTGATTATCACTG 59.448 37.037 1.98 0.00 38.38 3.66
3279 3329 1.285962 CCCCACATCTCCAATGAACCT 59.714 52.381 0.00 0.00 0.00 3.50
3287 3337 3.334604 GATGGCCCCACATCTCCA 58.665 61.111 0.00 0.00 43.02 3.86
3337 3387 7.433680 AGCCAAGTCAATAATTCGAAGTTTTT 58.566 30.769 2.37 0.00 0.00 1.94
3370 3420 6.785191 TCATTTCGCAATAATCCAGAGAAAC 58.215 36.000 0.00 0.00 34.72 2.78
3443 3493 8.636213 AGATCATATTGATTTTCCATGACCAAC 58.364 33.333 0.00 0.00 37.20 3.77
3457 3507 7.062322 TGTTTGGCCAAGTAGATCATATTGAT 58.938 34.615 19.48 0.00 40.34 2.57
3475 3525 2.030274 GTGGTGAACTGGTATGTTTGGC 60.030 50.000 0.00 0.00 0.00 4.52
3581 3631 3.664320 TGACTCAGGAATAGGGCCATAA 58.336 45.455 6.18 0.00 0.00 1.90
3661 3711 1.839354 TGCCAAGCTGAGATGGTATCA 59.161 47.619 4.14 0.00 39.00 2.15
3708 3758 7.000472 TCTCCAGAAAGTTCATTTGAAGACAT 59.000 34.615 0.00 0.00 34.27 3.06
3728 3778 0.644380 ACTCCCATGGGATCTCTCCA 59.356 55.000 33.89 9.26 44.08 3.86
3742 3792 1.106285 GTCCAATGATGCCAACTCCC 58.894 55.000 0.00 0.00 0.00 4.30
3771 3821 6.058183 GCTGGTTGTAGGATAGATTCAACAT 58.942 40.000 0.00 0.00 39.71 2.71
3773 3823 5.525378 CAGCTGGTTGTAGGATAGATTCAAC 59.475 44.000 5.57 0.00 38.00 3.18
3841 3891 6.808704 GCCAATGTTTCCTAAAAATGAGAGAC 59.191 38.462 0.00 0.00 0.00 3.36
3871 3921 2.293399 GCTTTCGACACTTGAAACCCAT 59.707 45.455 0.00 0.00 32.29 4.00
3878 3928 4.123506 TGTTACATGCTTTCGACACTTGA 58.876 39.130 0.00 0.00 0.00 3.02
3920 3970 9.647918 TCTATTGATACCTTCTTAGACTGATGT 57.352 33.333 0.00 0.00 0.00 3.06
3922 3972 9.647918 TGTCTATTGATACCTTCTTAGACTGAT 57.352 33.333 8.76 0.00 39.26 2.90
3923 3973 9.647918 ATGTCTATTGATACCTTCTTAGACTGA 57.352 33.333 8.76 0.00 39.26 3.41
3959 4012 3.986996 AATCCCAATCCTGCAAAAAGG 57.013 42.857 0.00 0.00 38.84 3.11
3968 4021 1.340991 CCGACACCAAATCCCAATCCT 60.341 52.381 0.00 0.00 0.00 3.24
4073 4127 5.714863 TGAATTGGAGTGGCCCATTAATAT 58.285 37.500 0.00 0.00 32.46 1.28
4086 4140 3.766051 GCCTTCCTTTGATGAATTGGAGT 59.234 43.478 0.00 0.00 0.00 3.85
4090 4144 2.159198 CCGGCCTTCCTTTGATGAATTG 60.159 50.000 0.00 0.00 0.00 2.32
4227 4284 8.937835 GTTTATATAGAAACCAGGGGTACCTAA 58.062 37.037 12.72 0.00 39.96 2.69
4267 4324 2.429610 GGTTATGGTTCTGCCTCTACGA 59.570 50.000 0.00 0.00 38.35 3.43
4398 4469 2.365105 CCAGGTTCGGGCCCTCTA 60.365 66.667 22.43 1.45 0.00 2.43
4453 4525 1.209019 CCCTGACTGTGGATCTTGGAG 59.791 57.143 0.00 0.00 0.00 3.86
4503 4580 4.517075 TCAATGAAAGCACAAATGTCGGTA 59.483 37.500 0.00 0.00 0.00 4.02
4562 4640 2.216898 GCCATCACTGATGACTAAGCC 58.783 52.381 19.04 0.00 42.09 4.35
4612 4690 2.289547 GCTACCAAACGCAAAGAGTTGA 59.710 45.455 0.00 0.00 36.83 3.18
4621 4699 1.906994 GCACGATGCTACCAAACGCA 61.907 55.000 0.00 0.00 40.96 5.24
4655 4733 2.818274 CTTACCAAGACGCCCGGC 60.818 66.667 0.00 0.00 0.00 6.13
4660 4738 2.098831 GCCGACCTTACCAAGACGC 61.099 63.158 0.00 0.00 0.00 5.19
4670 4748 1.228154 GGGTGAAGTTGCCGACCTT 60.228 57.895 0.00 0.00 0.00 3.50
4787 4866 3.134081 CCCGAAGTCAAAGCCTAAGGATA 59.866 47.826 0.00 0.00 0.00 2.59
4811 4890 2.271173 GAAGGTGGGGTAAGCCGG 59.729 66.667 0.00 0.00 34.97 6.13
4851 4930 1.964608 CTGATCCGAGCTCAAGGCCA 61.965 60.000 15.40 8.15 43.05 5.36
4869 4948 0.455410 GCTGTCGAGTGCAGAGATCT 59.545 55.000 5.75 0.00 36.12 2.75
4870 4949 0.527385 GGCTGTCGAGTGCAGAGATC 60.527 60.000 11.03 0.00 36.12 2.75
4877 4956 4.767255 CCCTGGGCTGTCGAGTGC 62.767 72.222 0.00 1.34 0.00 4.40
4879 4958 2.997897 GACCCTGGGCTGTCGAGT 60.998 66.667 14.08 0.00 0.00 4.18
4908 4987 0.530650 AATCGCCCTGTAGTCATGCG 60.531 55.000 0.00 0.00 42.16 4.73
4917 4996 1.579429 GCGTTTGAAATCGCCCTGT 59.421 52.632 11.79 0.00 45.54 4.00
4946 5025 3.243128 GGTCAACCCGCAGTATTGT 57.757 52.632 0.00 0.00 0.00 2.71
4957 5036 1.416401 TGACAGTTCTCAGGGTCAACC 59.584 52.381 0.00 0.00 37.33 3.77
4958 5037 2.365617 TCTGACAGTTCTCAGGGTCAAC 59.634 50.000 1.59 0.00 39.53 3.18
4970 5049 2.567169 TCGGATCCATGTTCTGACAGTT 59.433 45.455 13.41 0.00 39.58 3.16
4975 5054 0.459899 CCGTCGGATCCATGTTCTGA 59.540 55.000 13.41 0.00 0.00 3.27
4993 5072 2.194271 CCGTTTAACAGCGAGAGATCC 58.806 52.381 0.00 0.00 0.00 3.36
5005 5084 5.695851 TCCGATCTAGTATCCCGTTTAAC 57.304 43.478 0.00 0.00 0.00 2.01
5033 5112 2.096248 GCCGTTGGTAATTTCCATGGA 58.904 47.619 20.44 11.44 37.33 3.41
5040 5119 1.074889 AGGACTGGCCGTTGGTAATTT 59.925 47.619 0.00 0.00 43.43 1.82
5041 5120 0.696501 AGGACTGGCCGTTGGTAATT 59.303 50.000 0.00 0.00 43.43 1.40
5050 5129 1.828660 ATAGACCGAGGACTGGCCG 60.829 63.158 0.00 0.00 43.43 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.