Multiple sequence alignment - TraesCS1D01G433300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G433300 chr1D 100.000 4481 0 0 1 4481 482832564 482837044 0.000000e+00 8275.0
1 TraesCS1D01G433300 chr1D 90.286 175 10 5 1176 1344 264356771 264356944 5.830000e-54 222.0
2 TraesCS1D01G433300 chr1D 91.525 59 5 0 364 422 482827174 482827232 1.030000e-11 82.4
3 TraesCS1D01G433300 chr1D 89.231 65 6 1 120 184 46173658 46173595 3.720000e-11 80.5
4 TraesCS1D01G433300 chr1A 93.166 1829 89 18 1883 3691 579301989 579300177 0.000000e+00 2652.0
5 TraesCS1D01G433300 chr1A 93.711 795 39 9 3691 4481 579299806 579299019 0.000000e+00 1181.0
6 TraesCS1D01G433300 chr1A 86.920 948 59 23 607 1530 579303228 579302322 0.000000e+00 1003.0
7 TraesCS1D01G433300 chr1A 90.753 292 11 5 1610 1888 579302301 579302013 4.230000e-100 375.0
8 TraesCS1D01G433300 chr1A 89.606 279 14 5 290 562 579303492 579303223 1.540000e-89 340.0
9 TraesCS1D01G433300 chr1A 91.837 49 4 0 370 418 579322772 579322724 8.040000e-08 69.4
10 TraesCS1D01G433300 chr1B 91.098 1157 58 23 1883 3005 671197173 671198318 0.000000e+00 1524.0
11 TraesCS1D01G433300 chr1B 84.311 1466 79 79 290 1694 671195592 671196967 0.000000e+00 1293.0
12 TraesCS1D01G433300 chr1B 86.711 760 60 13 3686 4414 671199048 671199797 0.000000e+00 806.0
13 TraesCS1D01G433300 chr1B 88.802 509 52 3 1883 2388 44428909 44428403 1.770000e-173 619.0
14 TraesCS1D01G433300 chr1B 86.559 186 5 7 1722 1888 671196965 671197149 2.130000e-43 187.0
15 TraesCS1D01G433300 chr5B 89.980 509 46 3 1883 2388 290925553 290925047 0.000000e+00 652.0
16 TraesCS1D01G433300 chr6B 89.587 509 48 3 1883 2388 576307979 576308485 3.780000e-180 641.0
17 TraesCS1D01G433300 chr6B 88.550 131 15 0 1 131 476107239 476107369 4.640000e-35 159.0
18 TraesCS1D01G433300 chr4B 89.587 509 48 3 1883 2388 628841708 628841202 3.780000e-180 641.0
19 TraesCS1D01G433300 chr4B 88.571 105 10 1 1594 1698 507909155 507909257 4.710000e-25 126.0
20 TraesCS1D01G433300 chr7B 89.391 509 49 3 1883 2388 211650239 211649733 1.760000e-178 636.0
21 TraesCS1D01G433300 chr2B 89.237 511 46 5 1883 2388 82835701 82835195 8.180000e-177 630.0
22 TraesCS1D01G433300 chr2B 86.806 288 34 2 2103 2388 306179281 306178996 7.230000e-83 318.0
23 TraesCS1D01G433300 chr2B 90.291 103 5 3 1790 1888 82835826 82835725 3.640000e-26 130.0
24 TraesCS1D01G433300 chr2B 85.526 76 8 3 123 196 5763932 5763858 4.810000e-10 76.8
25 TraesCS1D01G433300 chr7D 95.775 142 4 2 1176 1316 443545925 443545785 1.250000e-55 228.0
26 TraesCS1D01G433300 chr7D 89.231 130 14 0 1 130 21097043 21096914 3.590000e-36 163.0
27 TraesCS1D01G433300 chr7D 87.248 149 7 5 1751 1888 443545021 443544874 4.640000e-35 159.0
28 TraesCS1D01G433300 chr7D 89.286 56 5 1 120 175 122962400 122962346 8.040000e-08 69.4
29 TraesCS1D01G433300 chr3D 90.857 175 9 5 1176 1344 550608477 550608304 1.250000e-55 228.0
30 TraesCS1D01G433300 chr3D 93.162 117 8 0 1 117 357731744 357731860 5.960000e-39 172.0
31 TraesCS1D01G433300 chr3D 92.308 117 8 1 1 117 2104242 2104357 9.970000e-37 165.0
32 TraesCS1D01G433300 chr3D 88.571 105 10 1 1594 1698 550607680 550607578 4.710000e-25 126.0
33 TraesCS1D01G433300 chrUn 90.643 171 10 4 1180 1344 99233295 99233465 5.830000e-54 222.0
34 TraesCS1D01G433300 chrUn 86.000 150 8 5 1751 1888 99234065 99234213 1.000000e-31 148.0
35 TraesCS1D01G433300 chrUn 88.571 105 10 1 1594 1698 99233958 99234060 4.710000e-25 126.0
36 TraesCS1D01G433300 chr4D 90.286 175 10 5 1176 1344 154755786 154755613 5.830000e-54 222.0
37 TraesCS1D01G433300 chr4D 90.286 175 10 5 1176 1344 282606499 282606326 5.830000e-54 222.0
38 TraesCS1D01G433300 chr4D 89.524 105 9 1 1594 1698 154754989 154754887 1.010000e-26 132.0
39 TraesCS1D01G433300 chr2A 89.714 175 11 5 1176 1344 2157423 2157596 2.710000e-52 217.0
40 TraesCS1D01G433300 chr2A 95.327 107 5 0 1884 1990 2158500 2158606 2.140000e-38 171.0
41 TraesCS1D01G433300 chr2A 87.417 151 6 5 1750 1888 2158326 2158475 1.290000e-35 161.0
42 TraesCS1D01G433300 chr2A 88.722 133 13 2 1 131 170068632 170068764 1.290000e-35 161.0
43 TraesCS1D01G433300 chr2A 89.873 79 5 3 120 196 7731302 7731225 1.030000e-16 99.0
44 TraesCS1D01G433300 chr5D 94.167 120 7 0 1 120 542407565 542407446 2.750000e-42 183.0
45 TraesCS1D01G433300 chr5A 93.443 122 8 0 1 122 598076809 598076688 9.900000e-42 182.0
46 TraesCS1D01G433300 chr2D 88.000 150 5 5 1751 1888 385101263 385101411 9.970000e-37 165.0
47 TraesCS1D01G433300 chr2D 91.453 117 10 0 1 117 562307830 562307946 1.290000e-35 161.0
48 TraesCS1D01G433300 chr2D 88.571 105 10 1 1594 1698 385101156 385101258 4.710000e-25 126.0
49 TraesCS1D01G433300 chr3A 90.909 121 11 0 5 125 716062126 716062246 3.590000e-36 163.0
50 TraesCS1D01G433300 chr6D 87.333 150 6 5 1751 1888 297946154 297946302 4.640000e-35 159.0
51 TraesCS1D01G433300 chr6D 87.333 150 6 5 1751 1888 412533216 412533364 4.640000e-35 159.0
52 TraesCS1D01G433300 chr6D 88.571 105 10 1 1594 1698 297946047 297946149 4.710000e-25 126.0
53 TraesCS1D01G433300 chr6D 87.342 79 7 3 120 196 34399143 34399220 2.220000e-13 87.9
54 TraesCS1D01G433300 chr6D 85.000 80 8 3 120 197 292029131 292029054 1.340000e-10 78.7
55 TraesCS1D01G433300 chr6D 86.765 68 7 2 120 187 38154751 38154816 1.730000e-09 75.0
56 TraesCS1D01G433300 chr4A 87.333 150 6 6 1751 1888 722722794 722722942 4.640000e-35 159.0
57 TraesCS1D01G433300 chr3B 88.571 105 10 1 1594 1698 475439576 475439678 4.710000e-25 126.0
58 TraesCS1D01G433300 chr7A 88.608 79 6 3 120 196 8499662 8499585 4.770000e-15 93.5
59 TraesCS1D01G433300 chr6A 92.308 65 3 2 120 183 107840317 107840254 1.720000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G433300 chr1D 482832564 482837044 4480 False 8275.0 8275 100.00000 1 4481 1 chr1D.!!$F3 4480
1 TraesCS1D01G433300 chr1A 579299019 579303492 4473 True 1110.2 2652 90.83120 290 4481 5 chr1A.!!$R2 4191
2 TraesCS1D01G433300 chr1B 671195592 671199797 4205 False 952.5 1524 87.16975 290 4414 4 chr1B.!!$F1 4124
3 TraesCS1D01G433300 chr1B 44428403 44428909 506 True 619.0 619 88.80200 1883 2388 1 chr1B.!!$R1 505
4 TraesCS1D01G433300 chr5B 290925047 290925553 506 True 652.0 652 89.98000 1883 2388 1 chr5B.!!$R1 505
5 TraesCS1D01G433300 chr6B 576307979 576308485 506 False 641.0 641 89.58700 1883 2388 1 chr6B.!!$F2 505
6 TraesCS1D01G433300 chr4B 628841202 628841708 506 True 641.0 641 89.58700 1883 2388 1 chr4B.!!$R1 505
7 TraesCS1D01G433300 chr7B 211649733 211650239 506 True 636.0 636 89.39100 1883 2388 1 chr7B.!!$R1 505
8 TraesCS1D01G433300 chr2B 82835195 82835826 631 True 380.0 630 89.76400 1790 2388 2 chr2B.!!$R3 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
522 540 0.103026 CGCCACTAGCTACATGCAGA 59.897 55.0 0.00 0.0 45.94 4.26 F
599 620 0.712222 GAGACGTTTTAACCGAGCCG 59.288 55.0 0.00 0.0 0.00 5.52 F
1432 1511 0.037605 ACCGGTGATTCCTCGAACAC 60.038 55.0 6.12 0.0 0.00 3.32 F
2713 2864 0.040067 CAAAGACGCTTTCCTGGCAC 60.040 55.0 2.45 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1410 1489 0.108992 TTCGAGGAATCACCGGTTCG 60.109 55.0 16.13 16.13 44.74 3.95 R
1504 1586 0.675083 CATGCTGCACCAACCTTGAA 59.325 50.0 3.57 0.00 0.00 2.69 R
3282 3466 0.248621 CCAAATCGAAATCTGGCGCC 60.249 55.0 22.73 22.73 0.00 6.53 R
3748 4383 0.394565 ACTTATGAGGCGAGCCATCC 59.605 55.0 17.18 5.64 38.92 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.575885 TCTGAAGGTTCAAAATAGACCGG 58.424 43.478 0.00 0.00 36.64 5.28
23 24 3.681593 TGAAGGTTCAAAATAGACCGGG 58.318 45.455 6.32 0.00 33.55 5.73
24 25 3.328343 TGAAGGTTCAAAATAGACCGGGA 59.672 43.478 6.32 0.00 33.55 5.14
25 26 4.018779 TGAAGGTTCAAAATAGACCGGGAT 60.019 41.667 6.32 0.00 33.55 3.85
26 27 4.586306 AGGTTCAAAATAGACCGGGATT 57.414 40.909 6.32 0.00 0.00 3.01
27 28 5.703730 AGGTTCAAAATAGACCGGGATTA 57.296 39.130 6.32 0.00 0.00 1.75
28 29 5.681639 AGGTTCAAAATAGACCGGGATTAG 58.318 41.667 6.32 0.00 0.00 1.73
29 30 5.427481 AGGTTCAAAATAGACCGGGATTAGA 59.573 40.000 6.32 2.11 0.00 2.10
30 31 5.758784 GGTTCAAAATAGACCGGGATTAGAG 59.241 44.000 6.32 0.00 0.00 2.43
31 32 6.407752 GGTTCAAAATAGACCGGGATTAGAGA 60.408 42.308 6.32 0.00 0.00 3.10
32 33 6.406692 TCAAAATAGACCGGGATTAGAGAG 57.593 41.667 6.32 0.00 0.00 3.20
33 34 5.897824 TCAAAATAGACCGGGATTAGAGAGT 59.102 40.000 6.32 0.00 0.00 3.24
34 35 6.383147 TCAAAATAGACCGGGATTAGAGAGTT 59.617 38.462 6.32 0.00 0.00 3.01
35 36 6.809976 AAATAGACCGGGATTAGAGAGTTT 57.190 37.500 6.32 0.00 0.00 2.66
36 37 5.793030 ATAGACCGGGATTAGAGAGTTTG 57.207 43.478 6.32 0.00 0.00 2.93
37 38 2.766828 AGACCGGGATTAGAGAGTTTGG 59.233 50.000 6.32 0.00 0.00 3.28
38 39 2.500504 GACCGGGATTAGAGAGTTTGGT 59.499 50.000 6.32 0.00 0.00 3.67
39 40 2.236395 ACCGGGATTAGAGAGTTTGGTG 59.764 50.000 6.32 0.00 0.00 4.17
40 41 2.236395 CCGGGATTAGAGAGTTTGGTGT 59.764 50.000 0.00 0.00 0.00 4.16
41 42 3.262420 CGGGATTAGAGAGTTTGGTGTG 58.738 50.000 0.00 0.00 0.00 3.82
42 43 3.010420 GGGATTAGAGAGTTTGGTGTGC 58.990 50.000 0.00 0.00 0.00 4.57
43 44 3.010420 GGATTAGAGAGTTTGGTGTGCC 58.990 50.000 0.00 0.00 0.00 5.01
44 45 2.163818 TTAGAGAGTTTGGTGTGCCG 57.836 50.000 0.00 0.00 37.67 5.69
45 46 1.334160 TAGAGAGTTTGGTGTGCCGA 58.666 50.000 0.00 0.00 37.67 5.54
46 47 0.687354 AGAGAGTTTGGTGTGCCGAT 59.313 50.000 0.00 0.00 37.67 4.18
47 48 1.072331 AGAGAGTTTGGTGTGCCGATT 59.928 47.619 0.00 0.00 37.67 3.34
48 49 1.880027 GAGAGTTTGGTGTGCCGATTT 59.120 47.619 0.00 0.00 37.67 2.17
49 50 1.880027 AGAGTTTGGTGTGCCGATTTC 59.120 47.619 0.00 0.00 37.67 2.17
50 51 1.606668 GAGTTTGGTGTGCCGATTTCA 59.393 47.619 0.00 0.00 37.67 2.69
51 52 1.608590 AGTTTGGTGTGCCGATTTCAG 59.391 47.619 0.00 0.00 37.67 3.02
52 53 0.958091 TTTGGTGTGCCGATTTCAGG 59.042 50.000 0.00 0.00 37.67 3.86
53 54 0.893270 TTGGTGTGCCGATTTCAGGG 60.893 55.000 0.00 0.00 37.67 4.45
54 55 1.002624 GGTGTGCCGATTTCAGGGA 60.003 57.895 0.00 0.00 0.00 4.20
55 56 0.394352 GGTGTGCCGATTTCAGGGAT 60.394 55.000 0.00 0.00 0.00 3.85
56 57 1.463674 GTGTGCCGATTTCAGGGATT 58.536 50.000 0.00 0.00 0.00 3.01
57 58 1.133025 GTGTGCCGATTTCAGGGATTG 59.867 52.381 0.00 0.00 0.00 2.67
58 59 0.740737 GTGCCGATTTCAGGGATTGG 59.259 55.000 0.00 0.00 0.00 3.16
59 60 0.395586 TGCCGATTTCAGGGATTGGG 60.396 55.000 0.00 0.00 0.00 4.12
60 61 0.106719 GCCGATTTCAGGGATTGGGA 60.107 55.000 0.00 0.00 0.00 4.37
61 62 1.972872 CCGATTTCAGGGATTGGGAG 58.027 55.000 0.00 0.00 0.00 4.30
62 63 1.212935 CCGATTTCAGGGATTGGGAGT 59.787 52.381 0.00 0.00 0.00 3.85
63 64 2.357154 CCGATTTCAGGGATTGGGAGTT 60.357 50.000 0.00 0.00 0.00 3.01
64 65 2.945668 CGATTTCAGGGATTGGGAGTTC 59.054 50.000 0.00 0.00 0.00 3.01
65 66 3.622206 CGATTTCAGGGATTGGGAGTTCA 60.622 47.826 0.00 0.00 0.00 3.18
66 67 3.439857 TTTCAGGGATTGGGAGTTCAG 57.560 47.619 0.00 0.00 0.00 3.02
67 68 1.289160 TCAGGGATTGGGAGTTCAGG 58.711 55.000 0.00 0.00 0.00 3.86
68 69 1.203428 TCAGGGATTGGGAGTTCAGGA 60.203 52.381 0.00 0.00 0.00 3.86
69 70 1.849039 CAGGGATTGGGAGTTCAGGAT 59.151 52.381 0.00 0.00 0.00 3.24
70 71 2.243221 CAGGGATTGGGAGTTCAGGATT 59.757 50.000 0.00 0.00 0.00 3.01
71 72 2.929043 AGGGATTGGGAGTTCAGGATTT 59.071 45.455 0.00 0.00 0.00 2.17
72 73 3.026694 GGGATTGGGAGTTCAGGATTTG 58.973 50.000 0.00 0.00 0.00 2.32
73 74 3.309121 GGGATTGGGAGTTCAGGATTTGA 60.309 47.826 0.00 0.00 0.00 2.69
74 75 4.540715 GGATTGGGAGTTCAGGATTTGAT 58.459 43.478 0.00 0.00 35.27 2.57
75 76 4.958581 GGATTGGGAGTTCAGGATTTGATT 59.041 41.667 0.00 0.00 35.27 2.57
76 77 5.423290 GGATTGGGAGTTCAGGATTTGATTT 59.577 40.000 0.00 0.00 35.27 2.17
77 78 6.607198 GGATTGGGAGTTCAGGATTTGATTTA 59.393 38.462 0.00 0.00 35.27 1.40
78 79 7.201857 GGATTGGGAGTTCAGGATTTGATTTAG 60.202 40.741 0.00 0.00 35.27 1.85
79 80 4.949856 TGGGAGTTCAGGATTTGATTTAGC 59.050 41.667 0.00 0.00 35.27 3.09
80 81 5.196695 GGGAGTTCAGGATTTGATTTAGCT 58.803 41.667 0.00 0.00 35.27 3.32
81 82 5.654209 GGGAGTTCAGGATTTGATTTAGCTT 59.346 40.000 0.00 0.00 35.27 3.74
82 83 6.153510 GGGAGTTCAGGATTTGATTTAGCTTT 59.846 38.462 0.00 0.00 35.27 3.51
83 84 7.254137 GGAGTTCAGGATTTGATTTAGCTTTC 58.746 38.462 0.00 0.00 35.27 2.62
84 85 7.094205 GGAGTTCAGGATTTGATTTAGCTTTCA 60.094 37.037 0.00 0.00 35.27 2.69
85 86 7.597386 AGTTCAGGATTTGATTTAGCTTTCAC 58.403 34.615 0.00 0.00 35.27 3.18
86 87 6.515272 TCAGGATTTGATTTAGCTTTCACC 57.485 37.500 0.00 0.00 0.00 4.02
87 88 6.248433 TCAGGATTTGATTTAGCTTTCACCT 58.752 36.000 0.00 0.00 0.00 4.00
88 89 7.402054 TCAGGATTTGATTTAGCTTTCACCTA 58.598 34.615 0.00 0.00 0.00 3.08
89 90 7.336931 TCAGGATTTGATTTAGCTTTCACCTAC 59.663 37.037 0.00 0.00 0.00 3.18
90 91 7.121168 CAGGATTTGATTTAGCTTTCACCTACA 59.879 37.037 0.00 0.00 0.00 2.74
91 92 7.669722 AGGATTTGATTTAGCTTTCACCTACAA 59.330 33.333 0.00 0.00 0.00 2.41
92 93 8.303876 GGATTTGATTTAGCTTTCACCTACAAA 58.696 33.333 0.00 0.00 0.00 2.83
93 94 9.860898 GATTTGATTTAGCTTTCACCTACAAAT 57.139 29.630 0.00 0.00 37.09 2.32
95 96 9.691362 TTTGATTTAGCTTTCACCTACAAATTC 57.309 29.630 0.00 0.00 0.00 2.17
96 97 8.402798 TGATTTAGCTTTCACCTACAAATTCA 57.597 30.769 0.00 0.00 0.00 2.57
97 98 8.855110 TGATTTAGCTTTCACCTACAAATTCAA 58.145 29.630 0.00 0.00 0.00 2.69
98 99 9.346725 GATTTAGCTTTCACCTACAAATTCAAG 57.653 33.333 0.00 0.00 0.00 3.02
99 100 5.712152 AGCTTTCACCTACAAATTCAAGG 57.288 39.130 0.00 0.38 36.42 3.61
100 101 5.140454 AGCTTTCACCTACAAATTCAAGGT 58.860 37.500 1.49 1.49 44.54 3.50
101 102 5.598417 AGCTTTCACCTACAAATTCAAGGTT 59.402 36.000 4.10 0.00 41.75 3.50
102 103 6.098266 AGCTTTCACCTACAAATTCAAGGTTT 59.902 34.615 4.10 0.00 41.75 3.27
103 104 6.200854 GCTTTCACCTACAAATTCAAGGTTTG 59.799 38.462 4.10 0.00 41.75 2.93
104 105 5.195001 TCACCTACAAATTCAAGGTTTGC 57.805 39.130 4.10 0.00 41.75 3.68
105 106 4.892934 TCACCTACAAATTCAAGGTTTGCT 59.107 37.500 4.10 0.00 41.75 3.91
106 107 5.362430 TCACCTACAAATTCAAGGTTTGCTT 59.638 36.000 4.10 0.00 41.75 3.91
107 108 6.048509 CACCTACAAATTCAAGGTTTGCTTT 58.951 36.000 4.10 0.00 41.75 3.51
108 109 6.018832 CACCTACAAATTCAAGGTTTGCTTTG 60.019 38.462 4.10 11.61 41.75 2.77
109 110 5.466393 CCTACAAATTCAAGGTTTGCTTTGG 59.534 40.000 14.95 0.00 39.55 3.28
110 111 5.096443 ACAAATTCAAGGTTTGCTTTGGA 57.904 34.783 14.95 0.00 39.55 3.53
111 112 4.875536 ACAAATTCAAGGTTTGCTTTGGAC 59.124 37.500 14.95 0.00 39.55 4.02
112 113 5.118286 CAAATTCAAGGTTTGCTTTGGACT 58.882 37.500 0.00 0.00 33.35 3.85
113 114 5.357742 AATTCAAGGTTTGCTTTGGACTT 57.642 34.783 0.00 0.00 33.19 3.01
114 115 4.817318 TTCAAGGTTTGCTTTGGACTTT 57.183 36.364 0.00 0.00 33.19 2.66
115 116 4.817318 TCAAGGTTTGCTTTGGACTTTT 57.183 36.364 0.00 0.00 33.19 2.27
116 117 5.159273 TCAAGGTTTGCTTTGGACTTTTT 57.841 34.783 0.00 0.00 33.19 1.94
153 154 8.611654 TTATGTTTGAGGTACTTTGTACTTCC 57.388 34.615 14.41 3.81 41.55 3.46
154 155 5.051816 TGTTTGAGGTACTTTGTACTTCCG 58.948 41.667 14.41 0.00 41.55 4.30
155 156 3.947910 TGAGGTACTTTGTACTTCCGG 57.052 47.619 14.41 0.00 41.55 5.14
156 157 3.233507 TGAGGTACTTTGTACTTCCGGT 58.766 45.455 14.41 0.00 41.55 5.28
157 158 4.406456 TGAGGTACTTTGTACTTCCGGTA 58.594 43.478 14.41 0.00 41.55 4.02
158 159 4.832266 TGAGGTACTTTGTACTTCCGGTAA 59.168 41.667 14.41 0.00 41.55 2.85
159 160 5.304101 TGAGGTACTTTGTACTTCCGGTAAA 59.696 40.000 14.41 0.00 41.55 2.01
160 161 6.014327 TGAGGTACTTTGTACTTCCGGTAAAT 60.014 38.462 14.41 0.00 41.55 1.40
161 162 7.178274 TGAGGTACTTTGTACTTCCGGTAAATA 59.822 37.037 14.41 0.00 41.55 1.40
162 163 8.082672 AGGTACTTTGTACTTCCGGTAAATAT 57.917 34.615 0.00 0.00 27.25 1.28
163 164 8.542926 AGGTACTTTGTACTTCCGGTAAATATT 58.457 33.333 0.00 0.00 27.25 1.28
164 165 9.166173 GGTACTTTGTACTTCCGGTAAATATTT 57.834 33.333 0.00 5.89 31.56 1.40
213 214 5.782893 AAAAACCGAATCAAAGTGGATGA 57.217 34.783 0.00 0.00 0.00 2.92
214 215 5.782893 AAAACCGAATCAAAGTGGATGAA 57.217 34.783 0.00 0.00 0.00 2.57
215 216 4.766404 AACCGAATCAAAGTGGATGAAC 57.234 40.909 0.00 0.00 0.00 3.18
216 217 3.750371 ACCGAATCAAAGTGGATGAACA 58.250 40.909 0.00 0.00 0.00 3.18
217 218 3.502211 ACCGAATCAAAGTGGATGAACAC 59.498 43.478 0.00 0.00 41.63 3.32
218 219 3.501828 CCGAATCAAAGTGGATGAACACA 59.498 43.478 0.00 0.00 43.72 3.72
219 220 4.023279 CCGAATCAAAGTGGATGAACACAA 60.023 41.667 0.00 0.00 43.72 3.33
220 221 5.335897 CCGAATCAAAGTGGATGAACACAAT 60.336 40.000 0.00 0.00 43.72 2.71
221 222 6.128035 CCGAATCAAAGTGGATGAACACAATA 60.128 38.462 0.00 0.00 43.72 1.90
222 223 6.742718 CGAATCAAAGTGGATGAACACAATAC 59.257 38.462 0.00 0.00 43.72 1.89
223 224 5.957842 TCAAAGTGGATGAACACAATACC 57.042 39.130 0.00 0.00 43.72 2.73
224 225 5.380900 TCAAAGTGGATGAACACAATACCA 58.619 37.500 0.00 0.00 43.72 3.25
225 226 5.473162 TCAAAGTGGATGAACACAATACCAG 59.527 40.000 0.00 0.00 43.72 4.00
226 227 4.640771 AGTGGATGAACACAATACCAGT 57.359 40.909 0.00 0.00 43.72 4.00
227 228 4.985538 AGTGGATGAACACAATACCAGTT 58.014 39.130 0.00 0.00 43.72 3.16
228 229 5.003804 AGTGGATGAACACAATACCAGTTC 58.996 41.667 0.00 0.00 43.72 3.01
229 230 4.000325 TGGATGAACACAATACCAGTTCG 59.000 43.478 0.00 0.00 43.36 3.95
230 231 4.000988 GGATGAACACAATACCAGTTCGT 58.999 43.478 0.00 0.00 43.36 3.85
231 232 4.142902 GGATGAACACAATACCAGTTCGTG 60.143 45.833 0.00 0.00 43.36 4.35
240 241 3.777925 CAGTTCGTGGAAGCGCCG 61.778 66.667 2.29 0.00 40.66 6.46
241 242 3.986006 AGTTCGTGGAAGCGCCGA 61.986 61.111 2.29 1.80 40.66 5.54
242 243 3.774702 GTTCGTGGAAGCGCCGAC 61.775 66.667 2.29 0.00 40.66 4.79
243 244 4.287781 TTCGTGGAAGCGCCGACA 62.288 61.111 2.29 0.00 40.66 4.35
244 245 3.793775 TTCGTGGAAGCGCCGACAA 62.794 57.895 2.29 0.00 40.66 3.18
245 246 4.072088 CGTGGAAGCGCCGACAAC 62.072 66.667 2.29 0.00 40.66 3.32
246 247 2.970324 GTGGAAGCGCCGACAACA 60.970 61.111 2.29 0.00 40.66 3.33
247 248 2.031919 TGGAAGCGCCGACAACAT 59.968 55.556 2.29 0.00 40.66 2.71
248 249 1.017177 GTGGAAGCGCCGACAACATA 61.017 55.000 2.29 0.00 40.66 2.29
249 250 0.320858 TGGAAGCGCCGACAACATAA 60.321 50.000 2.29 0.00 40.66 1.90
250 251 1.014352 GGAAGCGCCGACAACATAAT 58.986 50.000 2.29 0.00 0.00 1.28
251 252 2.206750 GGAAGCGCCGACAACATAATA 58.793 47.619 2.29 0.00 0.00 0.98
252 253 2.806244 GGAAGCGCCGACAACATAATAT 59.194 45.455 2.29 0.00 0.00 1.28
253 254 3.991773 GGAAGCGCCGACAACATAATATA 59.008 43.478 2.29 0.00 0.00 0.86
254 255 4.143179 GGAAGCGCCGACAACATAATATAC 60.143 45.833 2.29 0.00 0.00 1.47
255 256 3.985008 AGCGCCGACAACATAATATACA 58.015 40.909 2.29 0.00 0.00 2.29
256 257 4.566004 AGCGCCGACAACATAATATACAT 58.434 39.130 2.29 0.00 0.00 2.29
257 258 4.388773 AGCGCCGACAACATAATATACATG 59.611 41.667 2.29 0.00 0.00 3.21
258 259 4.387559 GCGCCGACAACATAATATACATGA 59.612 41.667 0.00 0.00 0.00 3.07
259 260 5.444613 GCGCCGACAACATAATATACATGAG 60.445 44.000 0.00 0.79 0.00 2.90
260 261 5.633601 CGCCGACAACATAATATACATGAGT 59.366 40.000 0.00 3.29 0.00 3.41
261 262 6.399986 CGCCGACAACATAATATACATGAGTG 60.400 42.308 0.00 4.94 0.00 3.51
262 263 6.645003 GCCGACAACATAATATACATGAGTGA 59.355 38.462 0.00 0.00 0.00 3.41
263 264 7.170828 GCCGACAACATAATATACATGAGTGAA 59.829 37.037 0.00 0.00 0.00 3.18
264 265 9.208022 CCGACAACATAATATACATGAGTGAAT 57.792 33.333 0.00 0.00 0.00 2.57
312 313 5.900339 ATTACGGTGTACTATTGATTGCG 57.100 39.130 0.00 0.00 0.00 4.85
421 425 3.560882 CCCCATTGATTGATAGCTCTCCC 60.561 52.174 0.00 0.00 0.00 4.30
422 426 3.073503 CCCATTGATTGATAGCTCTCCCA 59.926 47.826 0.00 0.00 0.00 4.37
423 427 4.446745 CCCATTGATTGATAGCTCTCCCAA 60.447 45.833 0.00 0.00 0.00 4.12
453 465 0.743688 ATCTCTGTACAGCTCAGGCG 59.256 55.000 18.45 0.00 44.37 5.52
515 533 1.519455 CCTGCACGCCACTAGCTAC 60.519 63.158 0.00 0.00 40.39 3.58
519 537 1.766143 GCACGCCACTAGCTACATGC 61.766 60.000 0.00 0.00 40.39 4.06
522 540 0.103026 CGCCACTAGCTACATGCAGA 59.897 55.000 0.00 0.00 45.94 4.26
523 541 1.863267 GCCACTAGCTACATGCAGAG 58.137 55.000 0.00 0.00 45.94 3.35
524 542 1.137872 GCCACTAGCTACATGCAGAGT 59.862 52.381 0.00 0.00 45.94 3.24
596 617 4.626321 GTCTTGAGACGTTTTAACCGAG 57.374 45.455 0.00 0.00 35.12 4.63
597 618 3.054878 TCTTGAGACGTTTTAACCGAGC 58.945 45.455 0.00 0.00 0.00 5.03
599 620 0.712222 GAGACGTTTTAACCGAGCCG 59.288 55.000 0.00 0.00 0.00 5.52
600 621 1.131218 GACGTTTTAACCGAGCCGC 59.869 57.895 0.00 0.00 0.00 6.53
645 669 4.574892 TGAAGACAATCACAATCCGCTTA 58.425 39.130 0.00 0.00 0.00 3.09
668 692 2.340078 GCGAGATCCAGCGCCATA 59.660 61.111 2.29 0.00 46.93 2.74
669 693 2.024319 GCGAGATCCAGCGCCATAC 61.024 63.158 2.29 0.00 46.93 2.39
670 694 1.363807 CGAGATCCAGCGCCATACA 59.636 57.895 2.29 0.00 0.00 2.29
693 718 3.442977 CAGTGTACCAGTGTACTCCTACC 59.557 52.174 4.68 0.00 46.19 3.18
805 835 3.446873 CCAAGCATAACCAAGCCACATTA 59.553 43.478 0.00 0.00 0.00 1.90
806 836 4.423732 CAAGCATAACCAAGCCACATTAC 58.576 43.478 0.00 0.00 0.00 1.89
808 838 3.696051 AGCATAACCAAGCCACATTACAG 59.304 43.478 0.00 0.00 0.00 2.74
810 840 4.339247 GCATAACCAAGCCACATTACAGAT 59.661 41.667 0.00 0.00 0.00 2.90
811 841 5.506317 GCATAACCAAGCCACATTACAGATC 60.506 44.000 0.00 0.00 0.00 2.75
812 842 2.632377 ACCAAGCCACATTACAGATCG 58.368 47.619 0.00 0.00 0.00 3.69
813 843 2.236146 ACCAAGCCACATTACAGATCGA 59.764 45.455 0.00 0.00 0.00 3.59
814 844 2.609459 CCAAGCCACATTACAGATCGAC 59.391 50.000 0.00 0.00 0.00 4.20
815 845 3.525537 CAAGCCACATTACAGATCGACT 58.474 45.455 0.00 0.00 0.00 4.18
816 846 3.444703 AGCCACATTACAGATCGACTC 57.555 47.619 0.00 0.00 0.00 3.36
817 847 3.027412 AGCCACATTACAGATCGACTCT 58.973 45.455 0.00 0.00 33.14 3.24
818 848 3.067461 AGCCACATTACAGATCGACTCTC 59.933 47.826 0.00 0.00 29.16 3.20
952 1002 4.462483 ACTTGGTTTTGGTCGCATTGATAT 59.538 37.500 0.00 0.00 0.00 1.63
982 1032 1.216710 CACTCCACTCGAGGAAGGC 59.783 63.158 18.41 0.00 43.57 4.35
983 1033 2.344203 ACTCCACTCGAGGAAGGCG 61.344 63.158 18.41 12.65 43.57 5.52
985 1035 4.148825 CCACTCGAGGAAGGCGGG 62.149 72.222 18.41 2.59 34.86 6.13
986 1036 4.148825 CACTCGAGGAAGGCGGGG 62.149 72.222 18.41 0.00 32.46 5.73
987 1037 4.377760 ACTCGAGGAAGGCGGGGA 62.378 66.667 18.41 0.00 32.46 4.81
988 1038 3.532155 CTCGAGGAAGGCGGGGAG 61.532 72.222 3.91 0.00 0.00 4.30
991 1041 4.798682 GAGGAAGGCGGGGAGGGA 62.799 72.222 0.00 0.00 0.00 4.20
992 1042 4.348495 AGGAAGGCGGGGAGGGAA 62.348 66.667 0.00 0.00 0.00 3.97
1194 1266 2.124695 GTGGATCCGGCCTGTTCC 60.125 66.667 15.49 15.49 0.00 3.62
1195 1267 3.407967 TGGATCCGGCCTGTTCCC 61.408 66.667 18.59 8.14 0.00 3.97
1196 1268 4.191015 GGATCCGGCCTGTTCCCC 62.191 72.222 12.16 0.00 0.00 4.81
1205 1277 1.376037 CCTGTTCCCCTCTTGACGC 60.376 63.158 0.00 0.00 0.00 5.19
1206 1278 1.738099 CTGTTCCCCTCTTGACGCG 60.738 63.158 3.53 3.53 0.00 6.01
1209 1281 1.301401 TTCCCCTCTTGACGCGTTG 60.301 57.895 15.53 7.40 0.00 4.10
1210 1282 2.030562 CCCCTCTTGACGCGTTGT 59.969 61.111 15.53 0.00 0.00 3.32
1211 1283 2.317609 CCCCTCTTGACGCGTTGTG 61.318 63.158 15.53 6.59 0.00 3.33
1212 1284 2.317609 CCCTCTTGACGCGTTGTGG 61.318 63.158 15.53 16.18 0.00 4.17
1213 1285 2.551270 CTCTTGACGCGTTGTGGC 59.449 61.111 15.53 0.00 0.00 5.01
1214 1286 2.954753 CTCTTGACGCGTTGTGGCC 61.955 63.158 15.53 0.00 0.00 5.36
1215 1287 3.276091 CTTGACGCGTTGTGGCCA 61.276 61.111 15.53 0.00 0.00 5.36
1322 1394 2.271497 GCAGATGTGAGCCCTGCT 59.729 61.111 0.00 0.00 46.96 4.24
1345 1421 0.758123 CCTCTCCTCTCCTCCATTGC 59.242 60.000 0.00 0.00 0.00 3.56
1372 1448 0.791238 CTCTGCACGTCTCGTTCTCG 60.791 60.000 0.00 0.00 38.32 4.04
1378 1454 1.229315 ACGTCTCGTTCTCGCTCTGT 61.229 55.000 0.00 0.00 36.35 3.41
1410 1489 6.998673 AGAATTTACCATCTTACTACCATGGC 59.001 38.462 13.04 0.00 40.85 4.40
1412 1491 2.394632 ACCATCTTACTACCATGGCGA 58.605 47.619 13.04 0.00 40.85 5.54
1415 1494 2.973694 TCTTACTACCATGGCGAACC 57.026 50.000 13.04 0.00 0.00 3.62
1428 1507 1.509463 CGAACCGGTGATTCCTCGA 59.491 57.895 17.09 0.00 34.63 4.04
1432 1511 0.037605 ACCGGTGATTCCTCGAACAC 60.038 55.000 6.12 0.00 0.00 3.32
1440 1519 3.436704 TGATTCCTCGAACACTTGCATTC 59.563 43.478 0.00 0.00 0.00 2.67
1444 1523 1.802960 CTCGAACACTTGCATTCTGCT 59.197 47.619 0.34 0.00 45.31 4.24
1473 1555 5.187967 ACCTACCTATCTGTCTCTGTTTTGG 59.812 44.000 0.00 0.00 0.00 3.28
1504 1586 0.322546 GGGGCCGAACTGAATTGAGT 60.323 55.000 0.00 0.00 0.00 3.41
1524 1606 1.180456 TCAAGGTTGGTGCAGCATGG 61.180 55.000 20.91 2.35 35.86 3.66
1526 1608 0.896940 AAGGTTGGTGCAGCATGGAG 60.897 55.000 20.91 0.00 36.81 3.86
1530 1612 0.983467 TTGGTGCAGCATGGAGTAGA 59.017 50.000 20.91 0.00 36.81 2.59
1531 1613 0.983467 TGGTGCAGCATGGAGTAGAA 59.017 50.000 15.99 0.00 36.81 2.10
1532 1614 1.561076 TGGTGCAGCATGGAGTAGAAT 59.439 47.619 15.99 0.00 36.81 2.40
1533 1615 2.025981 TGGTGCAGCATGGAGTAGAATT 60.026 45.455 15.99 0.00 36.81 2.17
1534 1616 2.615912 GGTGCAGCATGGAGTAGAATTC 59.384 50.000 11.86 0.00 36.81 2.17
1535 1617 3.539604 GTGCAGCATGGAGTAGAATTCT 58.460 45.455 13.56 13.56 36.81 2.40
1536 1618 4.443457 GGTGCAGCATGGAGTAGAATTCTA 60.443 45.833 11.86 11.24 36.81 2.10
1537 1619 4.749099 GTGCAGCATGGAGTAGAATTCTAG 59.251 45.833 15.58 4.30 36.81 2.43
1538 1620 3.745458 GCAGCATGGAGTAGAATTCTAGC 59.255 47.826 15.58 13.53 35.86 3.42
1539 1621 4.741837 GCAGCATGGAGTAGAATTCTAGCA 60.742 45.833 15.58 0.00 35.86 3.49
1541 1623 3.745458 GCATGGAGTAGAATTCTAGCAGC 59.255 47.826 15.58 10.11 0.00 5.25
1576 1658 4.680975 GCATTGGTAGGTGTAGGAAGAGAC 60.681 50.000 0.00 0.00 0.00 3.36
1589 1671 2.548920 GGAAGAGACCAACAGACAGGTG 60.549 54.545 0.00 0.00 38.50 4.00
1591 1673 2.958818 AGAGACCAACAGACAGGTGTA 58.041 47.619 0.00 0.00 38.50 2.90
1592 1674 2.894126 AGAGACCAACAGACAGGTGTAG 59.106 50.000 0.00 0.00 38.50 2.74
1594 1676 1.968493 GACCAACAGACAGGTGTAGGA 59.032 52.381 0.00 0.00 38.50 2.94
1596 1678 1.971357 CCAACAGACAGGTGTAGGAGT 59.029 52.381 0.00 0.00 31.03 3.85
1598 1680 2.628178 CAACAGACAGGTGTAGGAGTGA 59.372 50.000 0.00 0.00 0.00 3.41
1600 1682 1.203523 CAGACAGGTGTAGGAGTGAGC 59.796 57.143 0.00 0.00 0.00 4.26
1601 1683 1.203063 AGACAGGTGTAGGAGTGAGCA 60.203 52.381 0.00 0.00 0.00 4.26
1602 1684 1.618837 GACAGGTGTAGGAGTGAGCAA 59.381 52.381 0.00 0.00 0.00 3.91
1607 1691 3.073062 AGGTGTAGGAGTGAGCAAATTGT 59.927 43.478 0.00 0.00 0.00 2.71
1608 1692 3.437049 GGTGTAGGAGTGAGCAAATTGTC 59.563 47.826 0.00 0.00 0.00 3.18
1645 1729 4.079980 TGTGACTAGCTAGGCAACAAAA 57.920 40.909 30.85 11.47 44.25 2.44
1646 1730 4.456535 TGTGACTAGCTAGGCAACAAAAA 58.543 39.130 30.85 9.71 44.25 1.94
1649 1733 5.858581 GTGACTAGCTAGGCAACAAAAATTG 59.141 40.000 30.85 0.00 44.25 2.32
1698 1782 7.169158 TGTCATTTTGGTTTTATCTGGGATC 57.831 36.000 0.00 0.00 0.00 3.36
1727 1811 0.981183 ATCCAACAACCGACTGCCTA 59.019 50.000 0.00 0.00 0.00 3.93
1779 1868 6.238703 GGTGGTATTCAGAGTACTAGTACAGC 60.239 46.154 29.87 21.82 38.48 4.40
2128 2266 2.227089 CTGTCGACCACCTAGGCACC 62.227 65.000 14.12 0.00 43.14 5.01
2254 2392 2.695666 ACTAAGATGCGCAGTCTATGGT 59.304 45.455 18.32 13.91 0.00 3.55
2514 2656 2.083774 TGTGCAAATGTAGCTACTGGC 58.916 47.619 23.84 19.85 42.19 4.85
2605 2747 2.569404 CCCTCAGGTGCTTCTTACTTCT 59.431 50.000 0.00 0.00 0.00 2.85
2609 2760 1.066787 AGGTGCTTCTTACTTCTCGCC 60.067 52.381 0.00 0.00 0.00 5.54
2616 2767 4.154195 GCTTCTTACTTCTCGCCAATTTCA 59.846 41.667 0.00 0.00 0.00 2.69
2646 2797 0.716108 CTGTTCTCGCCAATCACGAC 59.284 55.000 0.00 0.00 35.35 4.34
2713 2864 0.040067 CAAAGACGCTTTCCTGGCAC 60.040 55.000 2.45 0.00 0.00 5.01
2757 2908 2.084546 GGCAAACGGAGCTCATAAACT 58.915 47.619 17.19 0.00 0.00 2.66
2833 2999 4.281688 ACATGTTGTTTCTTATGCCAAGCT 59.718 37.500 0.00 0.00 0.00 3.74
2923 3089 3.001330 GTCCGCATCTTCTTGGTAATTCG 59.999 47.826 0.00 0.00 0.00 3.34
2924 3090 2.936498 CCGCATCTTCTTGGTAATTCGT 59.064 45.455 0.00 0.00 0.00 3.85
2926 3092 4.334443 CGCATCTTCTTGGTAATTCGTTG 58.666 43.478 0.00 0.00 0.00 4.10
2934 3112 5.795972 TCTTGGTAATTCGTTGTACATCCA 58.204 37.500 0.00 0.00 0.00 3.41
2966 3144 3.733883 AGAGGGCATGGAATCATATGG 57.266 47.619 2.13 0.00 31.33 2.74
2987 3165 1.388547 TGTGGTTTCACCTGTCAAGC 58.611 50.000 0.00 0.00 42.98 4.01
2988 3166 1.340502 TGTGGTTTCACCTGTCAAGCA 60.341 47.619 0.00 0.00 42.98 3.91
3011 3189 8.629158 AGCACACATATTTTTGAACTTCTGTTA 58.371 29.630 0.00 0.00 36.39 2.41
3070 3248 7.951530 ATTTTGATTGCTGAGTTTACTTTGG 57.048 32.000 0.00 0.00 0.00 3.28
3127 3305 2.160205 GTTTCAGGTAAGGAGTTGCCC 58.840 52.381 0.00 0.00 39.20 5.36
3282 3466 6.723131 TCATCCTTATGTCGTACTCTATCG 57.277 41.667 0.00 0.00 34.50 2.92
3432 3634 1.974265 AGAGCGTGCTAGCATCTCTA 58.026 50.000 33.02 8.14 37.16 2.43
3623 3837 5.294306 TCGAAGCCTGTCATGAAAATCATAC 59.706 40.000 0.00 0.00 34.28 2.39
3748 4383 1.670811 AGTGGACGAAGCACAAAACTG 59.329 47.619 0.00 0.00 0.00 3.16
3768 4403 1.606737 GGATGGCTCGCCTCATAAGTC 60.607 57.143 9.65 0.00 36.94 3.01
3859 4494 7.448748 AAACACATGAAGGGTAATAGTTGTC 57.551 36.000 0.00 0.00 29.80 3.18
3928 4563 6.166279 CCTTCCTTTGCGCTATATTCATCTA 58.834 40.000 9.73 0.00 0.00 1.98
3930 4565 5.724328 TCCTTTGCGCTATATTCATCTAGG 58.276 41.667 9.73 1.15 0.00 3.02
4173 4838 4.851639 AAGGATCACTTGCAGATACCTT 57.148 40.909 0.00 10.02 38.21 3.50
4294 4962 4.675510 CTTCGCATAAACCATTGCAAGAT 58.324 39.130 4.94 0.00 38.80 2.40
4307 4975 5.463061 CCATTGCAAGATTTAAAATAGGCGG 59.537 40.000 4.94 0.00 0.00 6.13
4337 5005 3.743521 TGGAACAATCTCTGGACTGTTG 58.256 45.455 0.00 0.00 41.17 3.33
4417 5085 9.975218 AAAATAGGAAATGTGGTAGTGAGTAAT 57.025 29.630 0.00 0.00 0.00 1.89
4418 5086 8.964476 AATAGGAAATGTGGTAGTGAGTAATG 57.036 34.615 0.00 0.00 0.00 1.90
4419 5087 6.374417 AGGAAATGTGGTAGTGAGTAATGT 57.626 37.500 0.00 0.00 0.00 2.71
4420 5088 6.779860 AGGAAATGTGGTAGTGAGTAATGTT 58.220 36.000 0.00 0.00 0.00 2.71
4421 5089 6.879458 AGGAAATGTGGTAGTGAGTAATGTTC 59.121 38.462 0.00 0.00 0.00 3.18
4422 5090 6.653320 GGAAATGTGGTAGTGAGTAATGTTCA 59.347 38.462 0.00 0.00 0.00 3.18
4423 5091 7.360946 GGAAATGTGGTAGTGAGTAATGTTCAC 60.361 40.741 0.00 0.00 44.09 3.18
4424 5092 5.538849 TGTGGTAGTGAGTAATGTTCACA 57.461 39.130 7.96 0.00 45.72 3.58
4425 5093 6.109156 TGTGGTAGTGAGTAATGTTCACAT 57.891 37.500 7.96 0.00 45.72 3.21
4426 5094 6.163476 TGTGGTAGTGAGTAATGTTCACATC 58.837 40.000 7.96 1.14 45.72 3.06
4427 5095 5.581085 GTGGTAGTGAGTAATGTTCACATCC 59.419 44.000 7.96 9.13 45.72 3.51
4428 5096 5.483937 TGGTAGTGAGTAATGTTCACATCCT 59.516 40.000 7.96 0.00 45.72 3.24
4429 5097 6.666113 TGGTAGTGAGTAATGTTCACATCCTA 59.334 38.462 7.96 0.24 45.72 2.94
4430 5098 6.979238 GGTAGTGAGTAATGTTCACATCCTAC 59.021 42.308 7.96 0.00 45.72 3.18
4431 5099 5.978814 AGTGAGTAATGTTCACATCCTACC 58.021 41.667 7.96 0.00 45.72 3.18
4432 5100 4.804139 GTGAGTAATGTTCACATCCTACCG 59.196 45.833 0.82 0.00 43.41 4.02
4433 5101 4.464951 TGAGTAATGTTCACATCCTACCGT 59.535 41.667 0.00 0.00 35.10 4.83
4434 5102 4.755411 AGTAATGTTCACATCCTACCGTG 58.245 43.478 0.00 0.00 35.10 4.94
4435 5103 3.695830 AATGTTCACATCCTACCGTGT 57.304 42.857 0.00 0.00 35.10 4.49
4448 5116 4.062293 CCTACCGTGTCTTCATTTGAACA 58.938 43.478 0.00 0.00 0.00 3.18
4458 5126 9.301153 GTGTCTTCATTTGAACATTTTACTTGT 57.699 29.630 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.564821 CCCGGTCTATTTTGAACCTTCAGA 60.565 45.833 0.00 0.00 38.61 3.27
1 2 3.689649 CCCGGTCTATTTTGAACCTTCAG 59.310 47.826 0.00 0.00 38.61 3.02
2 3 3.328343 TCCCGGTCTATTTTGAACCTTCA 59.672 43.478 0.00 0.00 34.92 3.02
3 4 3.946606 TCCCGGTCTATTTTGAACCTTC 58.053 45.455 0.00 0.00 0.00 3.46
4 5 4.586306 ATCCCGGTCTATTTTGAACCTT 57.414 40.909 0.00 0.00 0.00 3.50
5 6 4.586306 AATCCCGGTCTATTTTGAACCT 57.414 40.909 0.00 0.00 0.00 3.50
6 7 5.677567 TCTAATCCCGGTCTATTTTGAACC 58.322 41.667 0.00 0.00 0.00 3.62
7 8 6.579865 TCTCTAATCCCGGTCTATTTTGAAC 58.420 40.000 0.00 0.00 0.00 3.18
8 9 6.383147 ACTCTCTAATCCCGGTCTATTTTGAA 59.617 38.462 0.00 0.00 0.00 2.69
9 10 5.897824 ACTCTCTAATCCCGGTCTATTTTGA 59.102 40.000 0.00 0.00 0.00 2.69
10 11 6.163135 ACTCTCTAATCCCGGTCTATTTTG 57.837 41.667 0.00 0.00 0.00 2.44
11 12 6.809976 AACTCTCTAATCCCGGTCTATTTT 57.190 37.500 0.00 0.00 0.00 1.82
12 13 6.408206 CCAAACTCTCTAATCCCGGTCTATTT 60.408 42.308 0.00 0.00 0.00 1.40
13 14 5.070580 CCAAACTCTCTAATCCCGGTCTATT 59.929 44.000 0.00 0.00 0.00 1.73
14 15 4.589374 CCAAACTCTCTAATCCCGGTCTAT 59.411 45.833 0.00 0.00 0.00 1.98
15 16 3.958798 CCAAACTCTCTAATCCCGGTCTA 59.041 47.826 0.00 0.00 0.00 2.59
16 17 2.766828 CCAAACTCTCTAATCCCGGTCT 59.233 50.000 0.00 0.00 0.00 3.85
17 18 2.500504 ACCAAACTCTCTAATCCCGGTC 59.499 50.000 0.00 0.00 0.00 4.79
18 19 2.236395 CACCAAACTCTCTAATCCCGGT 59.764 50.000 0.00 0.00 0.00 5.28
19 20 2.236395 ACACCAAACTCTCTAATCCCGG 59.764 50.000 0.00 0.00 0.00 5.73
20 21 3.262420 CACACCAAACTCTCTAATCCCG 58.738 50.000 0.00 0.00 0.00 5.14
21 22 3.010420 GCACACCAAACTCTCTAATCCC 58.990 50.000 0.00 0.00 0.00 3.85
22 23 3.010420 GGCACACCAAACTCTCTAATCC 58.990 50.000 0.00 0.00 35.26 3.01
23 24 2.673368 CGGCACACCAAACTCTCTAATC 59.327 50.000 0.00 0.00 34.57 1.75
24 25 2.301870 TCGGCACACCAAACTCTCTAAT 59.698 45.455 0.00 0.00 34.57 1.73
25 26 1.689813 TCGGCACACCAAACTCTCTAA 59.310 47.619 0.00 0.00 34.57 2.10
26 27 1.334160 TCGGCACACCAAACTCTCTA 58.666 50.000 0.00 0.00 34.57 2.43
27 28 0.687354 ATCGGCACACCAAACTCTCT 59.313 50.000 0.00 0.00 34.57 3.10
28 29 1.523758 AATCGGCACACCAAACTCTC 58.476 50.000 0.00 0.00 34.57 3.20
29 30 1.880027 GAAATCGGCACACCAAACTCT 59.120 47.619 0.00 0.00 34.57 3.24
30 31 1.606668 TGAAATCGGCACACCAAACTC 59.393 47.619 0.00 0.00 34.57 3.01
31 32 1.608590 CTGAAATCGGCACACCAAACT 59.391 47.619 0.00 0.00 34.57 2.66
32 33 1.335872 CCTGAAATCGGCACACCAAAC 60.336 52.381 0.00 0.00 34.57 2.93
33 34 0.958091 CCTGAAATCGGCACACCAAA 59.042 50.000 0.00 0.00 34.57 3.28
34 35 0.893270 CCCTGAAATCGGCACACCAA 60.893 55.000 0.00 0.00 34.57 3.67
35 36 1.303236 CCCTGAAATCGGCACACCA 60.303 57.895 0.00 0.00 34.57 4.17
36 37 0.394352 ATCCCTGAAATCGGCACACC 60.394 55.000 0.00 0.00 0.00 4.16
37 38 1.133025 CAATCCCTGAAATCGGCACAC 59.867 52.381 0.00 0.00 0.00 3.82
38 39 1.462616 CAATCCCTGAAATCGGCACA 58.537 50.000 0.00 0.00 0.00 4.57
39 40 0.740737 CCAATCCCTGAAATCGGCAC 59.259 55.000 0.00 0.00 0.00 5.01
40 41 0.395586 CCCAATCCCTGAAATCGGCA 60.396 55.000 0.00 0.00 0.00 5.69
41 42 0.106719 TCCCAATCCCTGAAATCGGC 60.107 55.000 0.00 0.00 0.00 5.54
42 43 1.212935 ACTCCCAATCCCTGAAATCGG 59.787 52.381 0.00 0.00 0.00 4.18
43 44 2.717639 ACTCCCAATCCCTGAAATCG 57.282 50.000 0.00 0.00 0.00 3.34
44 45 3.950395 CTGAACTCCCAATCCCTGAAATC 59.050 47.826 0.00 0.00 0.00 2.17
45 46 3.309410 CCTGAACTCCCAATCCCTGAAAT 60.309 47.826 0.00 0.00 0.00 2.17
46 47 2.041620 CCTGAACTCCCAATCCCTGAAA 59.958 50.000 0.00 0.00 0.00 2.69
47 48 1.635487 CCTGAACTCCCAATCCCTGAA 59.365 52.381 0.00 0.00 0.00 3.02
48 49 1.203428 TCCTGAACTCCCAATCCCTGA 60.203 52.381 0.00 0.00 0.00 3.86
49 50 1.289160 TCCTGAACTCCCAATCCCTG 58.711 55.000 0.00 0.00 0.00 4.45
50 51 2.293598 ATCCTGAACTCCCAATCCCT 57.706 50.000 0.00 0.00 0.00 4.20
51 52 3.026694 CAAATCCTGAACTCCCAATCCC 58.973 50.000 0.00 0.00 0.00 3.85
52 53 3.968265 TCAAATCCTGAACTCCCAATCC 58.032 45.455 0.00 0.00 0.00 3.01
53 54 6.535963 AAATCAAATCCTGAACTCCCAATC 57.464 37.500 0.00 0.00 37.67 2.67
54 55 6.097412 GCTAAATCAAATCCTGAACTCCCAAT 59.903 38.462 0.00 0.00 37.67 3.16
55 56 5.418840 GCTAAATCAAATCCTGAACTCCCAA 59.581 40.000 0.00 0.00 37.67 4.12
56 57 4.949856 GCTAAATCAAATCCTGAACTCCCA 59.050 41.667 0.00 0.00 37.67 4.37
57 58 5.196695 AGCTAAATCAAATCCTGAACTCCC 58.803 41.667 0.00 0.00 37.67 4.30
58 59 6.765915 AAGCTAAATCAAATCCTGAACTCC 57.234 37.500 0.00 0.00 37.67 3.85
59 60 7.752686 GTGAAAGCTAAATCAAATCCTGAACTC 59.247 37.037 0.00 0.00 37.67 3.01
60 61 7.309438 GGTGAAAGCTAAATCAAATCCTGAACT 60.309 37.037 0.00 0.00 37.67 3.01
61 62 6.808704 GGTGAAAGCTAAATCAAATCCTGAAC 59.191 38.462 0.00 0.00 37.67 3.18
62 63 6.924111 GGTGAAAGCTAAATCAAATCCTGAA 58.076 36.000 0.00 0.00 37.67 3.02
63 64 6.515272 GGTGAAAGCTAAATCAAATCCTGA 57.485 37.500 0.00 0.00 38.81 3.86
78 79 5.453567 ACCTTGAATTTGTAGGTGAAAGC 57.546 39.130 6.36 0.00 40.68 3.51
79 80 6.200854 GCAAACCTTGAATTTGTAGGTGAAAG 59.799 38.462 7.58 0.00 41.33 2.62
80 81 6.045955 GCAAACCTTGAATTTGTAGGTGAAA 58.954 36.000 7.58 0.00 41.33 2.69
81 82 5.362430 AGCAAACCTTGAATTTGTAGGTGAA 59.638 36.000 7.58 0.00 41.33 3.18
82 83 4.892934 AGCAAACCTTGAATTTGTAGGTGA 59.107 37.500 7.58 0.00 41.33 4.02
83 84 5.200368 AGCAAACCTTGAATTTGTAGGTG 57.800 39.130 7.58 0.13 41.33 4.00
84 85 5.869649 AAGCAAACCTTGAATTTGTAGGT 57.130 34.783 0.00 0.00 43.98 3.08
85 86 5.466393 CCAAAGCAAACCTTGAATTTGTAGG 59.534 40.000 12.53 0.00 38.93 3.18
86 87 6.200854 GTCCAAAGCAAACCTTGAATTTGTAG 59.799 38.462 12.53 3.94 38.93 2.74
87 88 6.045955 GTCCAAAGCAAACCTTGAATTTGTA 58.954 36.000 12.53 0.76 38.93 2.41
88 89 4.875536 GTCCAAAGCAAACCTTGAATTTGT 59.124 37.500 12.53 0.00 38.93 2.83
89 90 5.118286 AGTCCAAAGCAAACCTTGAATTTG 58.882 37.500 9.05 9.05 39.57 2.32
90 91 5.357742 AGTCCAAAGCAAACCTTGAATTT 57.642 34.783 0.00 0.00 33.01 1.82
91 92 5.357742 AAGTCCAAAGCAAACCTTGAATT 57.642 34.783 0.00 0.00 33.01 2.17
92 93 5.357742 AAAGTCCAAAGCAAACCTTGAAT 57.642 34.783 0.00 0.00 33.01 2.57
93 94 4.817318 AAAGTCCAAAGCAAACCTTGAA 57.183 36.364 0.00 0.00 33.01 2.69
94 95 4.817318 AAAAGTCCAAAGCAAACCTTGA 57.183 36.364 0.00 0.00 33.01 3.02
127 128 9.227777 GGAAGTACAAAGTACCTCAAACATAAT 57.772 33.333 7.87 0.00 0.00 1.28
128 129 7.385752 CGGAAGTACAAAGTACCTCAAACATAA 59.614 37.037 7.87 0.00 0.00 1.90
129 130 6.869913 CGGAAGTACAAAGTACCTCAAACATA 59.130 38.462 7.87 0.00 0.00 2.29
130 131 5.699458 CGGAAGTACAAAGTACCTCAAACAT 59.301 40.000 7.87 0.00 0.00 2.71
131 132 5.051816 CGGAAGTACAAAGTACCTCAAACA 58.948 41.667 7.87 0.00 0.00 2.83
132 133 4.450080 CCGGAAGTACAAAGTACCTCAAAC 59.550 45.833 0.00 0.00 0.00 2.93
133 134 4.101430 ACCGGAAGTACAAAGTACCTCAAA 59.899 41.667 9.46 0.00 0.00 2.69
134 135 3.642848 ACCGGAAGTACAAAGTACCTCAA 59.357 43.478 9.46 0.00 0.00 3.02
135 136 3.233507 ACCGGAAGTACAAAGTACCTCA 58.766 45.455 9.46 0.00 0.00 3.86
136 137 3.949842 ACCGGAAGTACAAAGTACCTC 57.050 47.619 9.46 1.14 0.00 3.85
137 138 5.806654 TTTACCGGAAGTACAAAGTACCT 57.193 39.130 9.46 0.00 0.00 3.08
138 139 8.722480 AATATTTACCGGAAGTACAAAGTACC 57.278 34.615 9.46 0.00 0.00 3.34
191 192 5.782893 TCATCCACTTTGATTCGGTTTTT 57.217 34.783 0.00 0.00 0.00 1.94
192 193 5.068460 TGTTCATCCACTTTGATTCGGTTTT 59.932 36.000 0.00 0.00 0.00 2.43
193 194 4.582656 TGTTCATCCACTTTGATTCGGTTT 59.417 37.500 0.00 0.00 0.00 3.27
194 195 4.023193 GTGTTCATCCACTTTGATTCGGTT 60.023 41.667 0.00 0.00 32.50 4.44
195 196 3.502211 GTGTTCATCCACTTTGATTCGGT 59.498 43.478 0.00 0.00 32.50 4.69
196 197 3.501828 TGTGTTCATCCACTTTGATTCGG 59.498 43.478 0.00 0.00 36.30 4.30
197 198 4.747540 TGTGTTCATCCACTTTGATTCG 57.252 40.909 0.00 0.00 36.30 3.34
198 199 7.029563 GGTATTGTGTTCATCCACTTTGATTC 58.970 38.462 0.00 0.00 36.30 2.52
199 200 6.493115 TGGTATTGTGTTCATCCACTTTGATT 59.507 34.615 0.00 0.00 36.30 2.57
200 201 6.009589 TGGTATTGTGTTCATCCACTTTGAT 58.990 36.000 0.00 0.00 36.30 2.57
201 202 5.380900 TGGTATTGTGTTCATCCACTTTGA 58.619 37.500 0.00 0.00 36.30 2.69
202 203 5.241506 ACTGGTATTGTGTTCATCCACTTTG 59.758 40.000 0.00 0.00 36.30 2.77
203 204 5.385198 ACTGGTATTGTGTTCATCCACTTT 58.615 37.500 0.00 0.00 36.30 2.66
204 205 4.985538 ACTGGTATTGTGTTCATCCACTT 58.014 39.130 0.00 0.00 36.30 3.16
205 206 4.640771 ACTGGTATTGTGTTCATCCACT 57.359 40.909 0.00 0.00 36.30 4.00
206 207 4.142902 CGAACTGGTATTGTGTTCATCCAC 60.143 45.833 0.00 0.00 39.77 4.02
207 208 4.000325 CGAACTGGTATTGTGTTCATCCA 59.000 43.478 0.00 0.00 39.77 3.41
208 209 4.000988 ACGAACTGGTATTGTGTTCATCC 58.999 43.478 0.00 0.00 39.77 3.51
209 210 4.142902 CCACGAACTGGTATTGTGTTCATC 60.143 45.833 0.00 0.00 39.77 2.92
210 211 3.751175 CCACGAACTGGTATTGTGTTCAT 59.249 43.478 0.00 0.00 39.77 2.57
211 212 3.135225 CCACGAACTGGTATTGTGTTCA 58.865 45.455 0.00 0.00 39.77 3.18
212 213 3.395639 TCCACGAACTGGTATTGTGTTC 58.604 45.455 0.00 0.00 41.52 3.18
213 214 3.478857 TCCACGAACTGGTATTGTGTT 57.521 42.857 0.00 0.00 41.52 3.32
214 215 3.399330 CTTCCACGAACTGGTATTGTGT 58.601 45.455 0.00 0.00 41.52 3.72
215 216 2.159627 GCTTCCACGAACTGGTATTGTG 59.840 50.000 0.00 0.00 41.52 3.33
216 217 2.423577 GCTTCCACGAACTGGTATTGT 58.576 47.619 0.00 0.00 41.52 2.71
217 218 1.393539 CGCTTCCACGAACTGGTATTG 59.606 52.381 0.00 0.00 41.52 1.90
218 219 1.722011 CGCTTCCACGAACTGGTATT 58.278 50.000 0.00 0.00 41.52 1.89
219 220 0.739813 GCGCTTCCACGAACTGGTAT 60.740 55.000 0.00 0.00 41.52 2.73
220 221 1.373748 GCGCTTCCACGAACTGGTA 60.374 57.895 0.00 0.00 41.52 3.25
221 222 2.665185 GCGCTTCCACGAACTGGT 60.665 61.111 0.00 0.00 41.52 4.00
222 223 3.423154 GGCGCTTCCACGAACTGG 61.423 66.667 7.64 0.00 42.29 4.00
223 224 3.777925 CGGCGCTTCCACGAACTG 61.778 66.667 7.64 0.00 34.06 3.16
224 225 3.986006 TCGGCGCTTCCACGAACT 61.986 61.111 7.64 0.00 33.21 3.01
225 226 3.774702 GTCGGCGCTTCCACGAAC 61.775 66.667 7.64 0.00 38.46 3.95
226 227 3.793775 TTGTCGGCGCTTCCACGAA 62.794 57.895 7.64 0.00 38.46 3.85
227 228 4.287781 TTGTCGGCGCTTCCACGA 62.288 61.111 7.64 4.11 34.06 4.35
228 229 4.072088 GTTGTCGGCGCTTCCACG 62.072 66.667 7.64 1.07 34.01 4.94
229 230 1.017177 TATGTTGTCGGCGCTTCCAC 61.017 55.000 7.64 0.00 34.01 4.02
230 231 0.320858 TTATGTTGTCGGCGCTTCCA 60.321 50.000 7.64 0.00 34.01 3.53
231 232 1.014352 ATTATGTTGTCGGCGCTTCC 58.986 50.000 7.64 0.00 0.00 3.46
232 233 4.446385 TGTATATTATGTTGTCGGCGCTTC 59.554 41.667 7.64 0.00 0.00 3.86
233 234 4.373527 TGTATATTATGTTGTCGGCGCTT 58.626 39.130 7.64 0.00 0.00 4.68
234 235 3.985008 TGTATATTATGTTGTCGGCGCT 58.015 40.909 7.64 0.00 0.00 5.92
235 236 4.387559 TCATGTATATTATGTTGTCGGCGC 59.612 41.667 0.00 0.00 0.00 6.53
236 237 5.633601 ACTCATGTATATTATGTTGTCGGCG 59.366 40.000 0.00 0.00 0.00 6.46
237 238 6.645003 TCACTCATGTATATTATGTTGTCGGC 59.355 38.462 0.00 0.00 0.00 5.54
238 239 8.587952 TTCACTCATGTATATTATGTTGTCGG 57.412 34.615 0.00 0.00 0.00 4.79
272 273 7.594758 CACCGTAATTTGATCACTCATGTTTTT 59.405 33.333 0.00 0.00 0.00 1.94
273 274 7.083858 CACCGTAATTTGATCACTCATGTTTT 58.916 34.615 0.00 0.00 0.00 2.43
274 275 6.206634 ACACCGTAATTTGATCACTCATGTTT 59.793 34.615 0.00 0.00 0.00 2.83
275 276 5.705441 ACACCGTAATTTGATCACTCATGTT 59.295 36.000 0.00 0.00 0.00 2.71
276 277 5.245531 ACACCGTAATTTGATCACTCATGT 58.754 37.500 0.00 0.00 0.00 3.21
277 278 5.801350 ACACCGTAATTTGATCACTCATG 57.199 39.130 0.00 0.00 0.00 3.07
278 279 6.640518 AGTACACCGTAATTTGATCACTCAT 58.359 36.000 0.00 0.00 0.00 2.90
279 280 6.032956 AGTACACCGTAATTTGATCACTCA 57.967 37.500 0.00 0.00 0.00 3.41
280 281 8.540492 CAATAGTACACCGTAATTTGATCACTC 58.460 37.037 0.00 0.00 0.00 3.51
281 282 8.255206 TCAATAGTACACCGTAATTTGATCACT 58.745 33.333 0.00 0.00 0.00 3.41
282 283 8.415192 TCAATAGTACACCGTAATTTGATCAC 57.585 34.615 0.00 0.00 0.00 3.06
283 284 9.607988 AATCAATAGTACACCGTAATTTGATCA 57.392 29.630 0.00 0.00 0.00 2.92
284 285 9.864034 CAATCAATAGTACACCGTAATTTGATC 57.136 33.333 0.00 0.00 0.00 2.92
285 286 8.342634 GCAATCAATAGTACACCGTAATTTGAT 58.657 33.333 0.00 0.00 0.00 2.57
286 287 7.464844 CGCAATCAATAGTACACCGTAATTTGA 60.465 37.037 0.00 0.00 0.00 2.69
287 288 6.627276 CGCAATCAATAGTACACCGTAATTTG 59.373 38.462 0.00 0.00 0.00 2.32
288 289 6.711579 CGCAATCAATAGTACACCGTAATTT 58.288 36.000 0.00 0.00 0.00 1.82
312 313 1.743995 AACGCGAGGGTTATGTGGC 60.744 57.895 15.93 0.00 0.00 5.01
348 352 2.679837 GTCGGTTCGGTCAGATGTAGTA 59.320 50.000 0.00 0.00 0.00 1.82
349 353 1.471684 GTCGGTTCGGTCAGATGTAGT 59.528 52.381 0.00 0.00 0.00 2.73
350 354 1.471287 TGTCGGTTCGGTCAGATGTAG 59.529 52.381 0.00 0.00 0.00 2.74
421 425 0.742281 CAGAGATGGAGCGTGGGTTG 60.742 60.000 0.00 0.00 0.00 3.77
422 426 1.194781 ACAGAGATGGAGCGTGGGTT 61.195 55.000 0.00 0.00 0.00 4.11
423 427 0.324368 TACAGAGATGGAGCGTGGGT 60.324 55.000 0.00 0.00 0.00 4.51
453 465 1.512926 AGCATAATTCGATCGGTGCC 58.487 50.000 16.41 4.16 33.29 5.01
462 480 4.692155 TGGTCATGATGCTAGCATAATTCG 59.308 41.667 29.64 16.61 36.70 3.34
515 533 6.266323 ACTGTAAATCGTACTACTCTGCATG 58.734 40.000 0.00 0.00 0.00 4.06
519 537 5.958372 CGTGACTGTAAATCGTACTACTCTG 59.042 44.000 0.00 0.00 0.00 3.35
522 540 4.154737 TGCGTGACTGTAAATCGTACTACT 59.845 41.667 0.00 0.00 0.00 2.57
523 541 4.406069 TGCGTGACTGTAAATCGTACTAC 58.594 43.478 0.00 0.00 0.00 2.73
524 542 4.683501 TGCGTGACTGTAAATCGTACTA 57.316 40.909 0.00 0.00 0.00 1.82
558 576 6.385176 TCTCAAGACATTGACAGATAGGGATT 59.615 38.462 0.00 0.00 40.54 3.01
563 581 5.645624 ACGTCTCAAGACATTGACAGATAG 58.354 41.667 10.56 0.00 44.99 2.08
573 594 4.624015 TCGGTTAAAACGTCTCAAGACAT 58.376 39.130 10.56 0.00 44.99 3.06
589 610 2.577059 CTTCCTGCGGCTCGGTTA 59.423 61.111 0.00 0.00 0.00 2.85
593 614 1.884926 GATTCCTTCCTGCGGCTCG 60.885 63.158 0.00 0.00 0.00 5.03
594 615 0.179034 ATGATTCCTTCCTGCGGCTC 60.179 55.000 0.00 0.00 0.00 4.70
595 616 0.465097 CATGATTCCTTCCTGCGGCT 60.465 55.000 0.00 0.00 0.00 5.52
596 617 0.464373 TCATGATTCCTTCCTGCGGC 60.464 55.000 0.00 0.00 0.00 6.53
597 618 1.672881 GTTCATGATTCCTTCCTGCGG 59.327 52.381 0.00 0.00 0.00 5.69
599 620 2.027385 GGGTTCATGATTCCTTCCTGC 58.973 52.381 14.39 0.00 0.00 4.85
600 621 3.285484 CAGGGTTCATGATTCCTTCCTG 58.715 50.000 12.96 11.38 35.27 3.86
645 669 1.140589 CGCTGGATCTCGCTGTCTT 59.859 57.895 0.00 0.00 0.00 3.01
693 718 2.436646 GTCCCGGCCATCACACTG 60.437 66.667 2.24 0.00 0.00 3.66
805 835 3.706594 AGAGAGAGAGAGAGTCGATCTGT 59.293 47.826 5.04 1.53 38.84 3.41
806 836 4.038522 AGAGAGAGAGAGAGAGTCGATCTG 59.961 50.000 5.04 0.00 38.84 2.90
808 838 4.279671 AGAGAGAGAGAGAGAGAGTCGATC 59.720 50.000 0.00 0.00 0.00 3.69
810 840 3.632333 AGAGAGAGAGAGAGAGAGTCGA 58.368 50.000 0.00 0.00 0.00 4.20
811 841 3.634448 AGAGAGAGAGAGAGAGAGAGTCG 59.366 52.174 0.00 0.00 0.00 4.18
812 842 4.646945 TGAGAGAGAGAGAGAGAGAGAGTC 59.353 50.000 0.00 0.00 0.00 3.36
813 843 4.614475 TGAGAGAGAGAGAGAGAGAGAGT 58.386 47.826 0.00 0.00 0.00 3.24
814 844 5.355596 GTTGAGAGAGAGAGAGAGAGAGAG 58.644 50.000 0.00 0.00 0.00 3.20
815 845 4.162320 GGTTGAGAGAGAGAGAGAGAGAGA 59.838 50.000 0.00 0.00 0.00 3.10
816 846 4.446371 GGTTGAGAGAGAGAGAGAGAGAG 58.554 52.174 0.00 0.00 0.00 3.20
817 847 3.118775 CGGTTGAGAGAGAGAGAGAGAGA 60.119 52.174 0.00 0.00 0.00 3.10
818 848 3.198068 CGGTTGAGAGAGAGAGAGAGAG 58.802 54.545 0.00 0.00 0.00 3.20
849 879 2.997315 TCCTCACCACCTCAGCGG 60.997 66.667 0.00 0.00 39.35 5.52
850 880 2.575993 CTCCTCACCACCTCAGCG 59.424 66.667 0.00 0.00 0.00 5.18
851 881 0.614979 TACCTCCTCACCACCTCAGC 60.615 60.000 0.00 0.00 0.00 4.26
852 882 1.479709 CTACCTCCTCACCACCTCAG 58.520 60.000 0.00 0.00 0.00 3.35
853 883 0.614979 GCTACCTCCTCACCACCTCA 60.615 60.000 0.00 0.00 0.00 3.86
952 1002 0.243907 GTGGAGTGCAGAGTAAGCGA 59.756 55.000 0.00 0.00 33.85 4.93
982 1032 0.399233 ATTCTCTCCTTCCCTCCCCG 60.399 60.000 0.00 0.00 0.00 5.73
983 1033 1.135960 CATTCTCTCCTTCCCTCCCC 58.864 60.000 0.00 0.00 0.00 4.81
985 1035 1.140652 CTGCATTCTCTCCTTCCCTCC 59.859 57.143 0.00 0.00 0.00 4.30
986 1036 1.474855 GCTGCATTCTCTCCTTCCCTC 60.475 57.143 0.00 0.00 0.00 4.30
987 1037 0.545646 GCTGCATTCTCTCCTTCCCT 59.454 55.000 0.00 0.00 0.00 4.20
988 1038 0.254178 TGCTGCATTCTCTCCTTCCC 59.746 55.000 0.00 0.00 0.00 3.97
989 1039 1.666054 CTGCTGCATTCTCTCCTTCC 58.334 55.000 1.31 0.00 0.00 3.46
990 1040 1.015868 GCTGCTGCATTCTCTCCTTC 58.984 55.000 11.11 0.00 39.41 3.46
991 1041 0.327259 TGCTGCTGCATTCTCTCCTT 59.673 50.000 14.93 0.00 45.31 3.36
992 1042 1.988817 TGCTGCTGCATTCTCTCCT 59.011 52.632 14.93 0.00 45.31 3.69
1159 1231 2.508887 CGTGGAGCAGAGCAGAGC 60.509 66.667 0.00 0.00 0.00 4.09
1160 1232 2.183811 CCGTGGAGCAGAGCAGAG 59.816 66.667 0.00 0.00 0.00 3.35
1161 1233 2.601666 ACCGTGGAGCAGAGCAGA 60.602 61.111 0.00 0.00 0.00 4.26
1162 1234 2.433838 CACCGTGGAGCAGAGCAG 60.434 66.667 0.00 0.00 0.00 4.24
1163 1235 4.007644 CCACCGTGGAGCAGAGCA 62.008 66.667 12.68 0.00 40.96 4.26
1189 1261 2.035237 AACGCGTCAAGAGGGGAACA 62.035 55.000 14.44 0.00 34.01 3.18
1191 1263 1.301401 CAACGCGTCAAGAGGGGAA 60.301 57.895 14.44 0.00 34.01 3.97
1194 1266 2.317609 CCACAACGCGTCAAGAGGG 61.318 63.158 14.44 9.44 0.00 4.30
1195 1267 2.954753 GCCACAACGCGTCAAGAGG 61.955 63.158 14.44 14.82 0.00 3.69
1196 1268 2.551270 GCCACAACGCGTCAAGAG 59.449 61.111 14.44 4.41 0.00 2.85
1205 1277 3.372730 CCCACCATGGCCACAACG 61.373 66.667 8.16 0.00 35.79 4.10
1206 1278 2.203625 ACCCACCATGGCCACAAC 60.204 61.111 8.16 0.00 35.79 3.32
1209 1281 4.992740 TGCACCCACCATGGCCAC 62.993 66.667 8.16 0.00 35.79 5.01
1210 1282 4.682334 CTGCACCCACCATGGCCA 62.682 66.667 13.04 8.56 35.79 5.36
1212 1284 4.365111 TCCTGCACCCACCATGGC 62.365 66.667 13.04 0.00 35.79 4.40
1213 1285 2.044650 CTCCTGCACCCACCATGG 60.045 66.667 11.19 11.19 37.25 3.66
1214 1286 2.753043 GCTCCTGCACCCACCATG 60.753 66.667 0.00 0.00 39.41 3.66
1215 1287 2.937689 AGCTCCTGCACCCACCAT 60.938 61.111 0.00 0.00 42.74 3.55
1322 1394 0.253868 TGGAGGAGAGGAGAGGAGGA 60.254 60.000 0.00 0.00 0.00 3.71
1345 1421 1.374758 GACGTGCAGAGAGGTTGGG 60.375 63.158 0.00 0.00 0.00 4.12
1410 1489 0.108992 TTCGAGGAATCACCGGTTCG 60.109 55.000 16.13 16.13 44.74 3.95
1412 1491 0.682852 TGTTCGAGGAATCACCGGTT 59.317 50.000 2.97 0.00 44.74 4.44
1415 1494 1.726791 CAAGTGTTCGAGGAATCACCG 59.273 52.381 0.00 0.00 44.74 4.94
1440 1519 3.639094 ACAGATAGGTAGGTAGCAAGCAG 59.361 47.826 0.00 0.00 0.00 4.24
1444 1523 5.133941 CAGAGACAGATAGGTAGGTAGCAA 58.866 45.833 0.00 0.00 0.00 3.91
1504 1586 0.675083 CATGCTGCACCAACCTTGAA 59.325 50.000 3.57 0.00 0.00 2.69
1538 1620 2.820922 TGCCATACGCAGCTGCTG 60.821 61.111 34.22 28.00 44.64 4.41
1546 1628 0.944386 CACCTACCAATGCCATACGC 59.056 55.000 0.00 0.00 38.31 4.42
1547 1629 2.325583 ACACCTACCAATGCCATACG 57.674 50.000 0.00 0.00 0.00 3.06
1553 1635 3.451178 TCTCTTCCTACACCTACCAATGC 59.549 47.826 0.00 0.00 0.00 3.56
1554 1636 4.141914 GGTCTCTTCCTACACCTACCAATG 60.142 50.000 0.00 0.00 0.00 2.82
1559 1641 3.830755 TGTTGGTCTCTTCCTACACCTAC 59.169 47.826 0.00 0.00 38.03 3.18
1576 1658 1.971357 ACTCCTACACCTGTCTGTTGG 59.029 52.381 0.00 0.00 38.12 3.77
1589 1671 3.326747 ACGACAATTTGCTCACTCCTAC 58.673 45.455 0.00 0.00 0.00 3.18
1591 1673 2.417719 GACGACAATTTGCTCACTCCT 58.582 47.619 0.00 0.00 0.00 3.69
1592 1674 1.464997 GGACGACAATTTGCTCACTCC 59.535 52.381 0.00 0.00 0.00 3.85
1594 1676 2.254546 TGGACGACAATTTGCTCACT 57.745 45.000 0.00 0.00 0.00 3.41
1596 1678 4.094739 CACATATGGACGACAATTTGCTCA 59.905 41.667 7.80 0.00 0.00 4.26
1598 1680 4.260985 TCACATATGGACGACAATTTGCT 58.739 39.130 7.80 0.00 0.00 3.91
1600 1682 5.801350 ACTCACATATGGACGACAATTTG 57.199 39.130 7.80 0.00 0.00 2.32
1601 1683 7.011389 CACATACTCACATATGGACGACAATTT 59.989 37.037 7.80 0.00 36.95 1.82
1602 1684 6.479990 CACATACTCACATATGGACGACAATT 59.520 38.462 7.80 0.00 36.95 2.32
1607 1691 4.887655 AGTCACATACTCACATATGGACGA 59.112 41.667 7.80 0.00 37.57 4.20
1608 1692 5.188327 AGTCACATACTCACATATGGACG 57.812 43.478 7.80 0.00 37.57 4.79
1645 1729 4.136796 TGTTCAGTTCAGCTAGCACAATT 58.863 39.130 18.83 2.61 0.00 2.32
1646 1730 3.743521 TGTTCAGTTCAGCTAGCACAAT 58.256 40.909 18.83 0.00 0.00 2.71
1649 1733 2.481952 CCTTGTTCAGTTCAGCTAGCAC 59.518 50.000 18.83 6.53 0.00 4.40
1718 1802 3.620929 ACATACGTACATAGGCAGTCG 57.379 47.619 0.00 0.00 0.00 4.18
2110 2248 2.280552 GGTGCCTAGGTGGTCGACA 61.281 63.158 18.91 0.27 38.35 4.35
2128 2266 1.289109 CCGTCAGTTTGTAGGCCACG 61.289 60.000 5.01 1.88 0.00 4.94
2456 2596 3.903467 AGTTCAGCTCTTTTTCCCACTT 58.097 40.909 0.00 0.00 0.00 3.16
2461 2603 7.012421 TCTCAAGTTAAGTTCAGCTCTTTTTCC 59.988 37.037 0.00 0.00 0.00 3.13
2468 2610 8.563732 AGAAAATTCTCAAGTTAAGTTCAGCTC 58.436 33.333 0.00 0.00 29.94 4.09
2514 2656 4.808364 GCAACAGCCTGAGTTCTCTTATAG 59.192 45.833 0.00 0.00 0.00 1.31
2616 2767 1.016130 CGAGAACAGAGTGGCGCAAT 61.016 55.000 10.83 0.00 0.00 3.56
2713 2864 1.883084 GCTATTGTCCGACGCCAGG 60.883 63.158 0.00 0.00 0.00 4.45
2757 2908 6.097356 GGATGACAGTCTTACATGAACGTAA 58.903 40.000 0.00 0.00 0.00 3.18
2923 3089 8.547967 TCTAAGAACTCAAATGGATGTACAAC 57.452 34.615 0.00 0.00 0.00 3.32
2924 3090 7.824289 CCTCTAAGAACTCAAATGGATGTACAA 59.176 37.037 0.00 0.00 0.00 2.41
2926 3092 6.763610 CCCTCTAAGAACTCAAATGGATGTAC 59.236 42.308 0.00 0.00 0.00 2.90
2934 3112 4.228210 TCCATGCCCTCTAAGAACTCAAAT 59.772 41.667 0.00 0.00 0.00 2.32
3070 3248 8.270799 CACATGAAACATTCAGTTGACAATTTC 58.729 33.333 0.00 0.00 43.98 2.17
3237 3421 2.092968 TGCCCTTCTTAGCATAGTGTGG 60.093 50.000 0.00 0.00 33.08 4.17
3282 3466 0.248621 CCAAATCGAAATCTGGCGCC 60.249 55.000 22.73 22.73 0.00 6.53
3319 3503 3.638627 TGAAAATGCACACAATGGTACCA 59.361 39.130 18.99 18.99 0.00 3.25
3432 3634 5.710513 TTGCTGACTTGTGCTTGATAAAT 57.289 34.783 0.00 0.00 0.00 1.40
3623 3837 5.997385 ACTAAACATACTTCCAAACTTGCG 58.003 37.500 0.00 0.00 0.00 4.85
3748 4383 0.394565 ACTTATGAGGCGAGCCATCC 59.605 55.000 17.18 5.64 38.92 3.51
3768 4403 7.599621 TCTTGCATTTCAACATGTATCCTTTTG 59.400 33.333 0.00 0.00 0.00 2.44
3859 4494 3.092334 TGGACACATTATCCGTCATCG 57.908 47.619 0.00 0.00 39.30 3.84
3928 4563 1.561643 TCAAGGAAGATCACGCTCCT 58.438 50.000 0.00 0.00 0.00 3.69
3930 4565 4.876125 TCATATCAAGGAAGATCACGCTC 58.124 43.478 0.00 0.00 0.00 5.03
4089 4754 2.030185 TCAACGTGTTCTGAGCTAGGTC 60.030 50.000 15.12 15.12 0.00 3.85
4141 4806 6.480763 TGCAAGTGATCCTTTATACTTGGAA 58.519 36.000 17.96 0.00 44.62 3.53
4173 4838 2.290387 TGCTTGGCCACGGAATTTAGTA 60.290 45.455 3.88 0.00 0.00 1.82
4248 4916 2.492881 TGCGATTCCTGTGAATGCATTT 59.507 40.909 14.33 0.00 41.30 2.32
4294 4962 2.007360 TCGACGCCGCCTATTTTAAA 57.993 45.000 0.00 0.00 35.37 1.52
4307 4975 2.673368 AGAGATTGTTCCAAATCGACGC 59.327 45.455 0.00 0.00 40.75 5.19
4331 4999 3.402110 TGCGATGATGAAGAACAACAGT 58.598 40.909 0.00 0.00 34.94 3.55
4337 5005 4.787598 AGTTTGTTGCGATGATGAAGAAC 58.212 39.130 0.00 0.00 0.00 3.01
4404 5072 5.483937 AGGATGTGAACATTACTCACTACCA 59.516 40.000 15.47 0.00 43.03 3.25
4405 5073 5.978814 AGGATGTGAACATTACTCACTACC 58.021 41.667 0.00 7.42 43.03 3.18
4417 5085 2.244695 AGACACGGTAGGATGTGAACA 58.755 47.619 0.00 0.00 39.38 3.18
4418 5086 3.251571 GAAGACACGGTAGGATGTGAAC 58.748 50.000 0.00 0.00 39.38 3.18
4419 5087 2.894765 TGAAGACACGGTAGGATGTGAA 59.105 45.455 0.00 0.00 39.38 3.18
4420 5088 2.521126 TGAAGACACGGTAGGATGTGA 58.479 47.619 0.00 0.00 39.38 3.58
4421 5089 3.526931 ATGAAGACACGGTAGGATGTG 57.473 47.619 0.00 0.00 41.81 3.21
4422 5090 4.020573 TCAAATGAAGACACGGTAGGATGT 60.021 41.667 0.00 0.00 0.00 3.06
4423 5091 4.503910 TCAAATGAAGACACGGTAGGATG 58.496 43.478 0.00 0.00 0.00 3.51
4424 5092 4.819105 TCAAATGAAGACACGGTAGGAT 57.181 40.909 0.00 0.00 0.00 3.24
4425 5093 4.202274 TGTTCAAATGAAGACACGGTAGGA 60.202 41.667 0.00 0.00 34.27 2.94
4426 5094 4.062293 TGTTCAAATGAAGACACGGTAGG 58.938 43.478 0.00 0.00 34.27 3.18
4427 5095 5.862924 ATGTTCAAATGAAGACACGGTAG 57.137 39.130 0.00 0.00 34.27 3.18
4428 5096 6.627395 AAATGTTCAAATGAAGACACGGTA 57.373 33.333 0.00 0.00 34.27 4.02
4429 5097 5.514274 AAATGTTCAAATGAAGACACGGT 57.486 34.783 0.00 0.00 34.27 4.83
4430 5098 7.138736 AGTAAAATGTTCAAATGAAGACACGG 58.861 34.615 0.00 0.00 34.27 4.94
4431 5099 8.471457 CAAGTAAAATGTTCAAATGAAGACACG 58.529 33.333 0.00 0.00 34.27 4.49
4432 5100 9.301153 ACAAGTAAAATGTTCAAATGAAGACAC 57.699 29.630 0.00 0.00 34.27 3.67
4433 5101 9.299963 CACAAGTAAAATGTTCAAATGAAGACA 57.700 29.630 0.00 0.00 34.27 3.41
4434 5102 9.515020 TCACAAGTAAAATGTTCAAATGAAGAC 57.485 29.630 0.00 0.00 34.27 3.01
4435 5103 9.515020 GTCACAAGTAAAATGTTCAAATGAAGA 57.485 29.630 0.00 0.00 34.27 2.87
4448 5116 6.639632 ATGCTCACAAGTCACAAGTAAAAT 57.360 33.333 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.