Multiple sequence alignment - TraesCS1D01G433100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G433100 chr1D 100.000 3858 0 0 1 3858 482494270 482490413 0.000000e+00 7125.0
1 TraesCS1D01G433100 chr1D 89.501 1543 148 7 1332 2871 482517065 482515534 0.000000e+00 1940.0
2 TraesCS1D01G433100 chr1D 88.178 1531 171 6 1332 2858 482369750 482371274 0.000000e+00 1816.0
3 TraesCS1D01G433100 chr1D 85.979 1676 197 21 1332 2975 482323885 482325554 0.000000e+00 1759.0
4 TraesCS1D01G433100 chr1D 98.103 369 7 0 1 369 458174328 458174696 0.000000e+00 643.0
5 TraesCS1D01G433100 chr1D 97.019 369 11 0 1 369 372462767 372463135 4.230000e-174 621.0
6 TraesCS1D01G433100 chr1D 81.266 379 62 6 3476 3854 482482443 482482074 8.100000e-77 298.0
7 TraesCS1D01G433100 chr1B 94.237 2013 105 4 975 2978 670956645 670958655 0.000000e+00 3064.0
8 TraesCS1D01G433100 chr1B 86.426 1665 193 19 1332 2966 670899924 670901585 0.000000e+00 1792.0
9 TraesCS1D01G433100 chr1B 88.898 1279 132 6 1602 2871 670917380 670918657 0.000000e+00 1567.0
10 TraesCS1D01G433100 chr1B 85.738 603 30 23 369 953 670956097 670956661 1.540000e-163 586.0
11 TraesCS1D01G433100 chr1B 94.979 239 12 0 2976 3214 670958692 670958930 3.640000e-100 375.0
12 TraesCS1D01G433100 chr1B 80.439 501 89 5 3356 3849 670925141 670925639 1.310000e-99 374.0
13 TraesCS1D01G433100 chr1B 90.336 238 23 0 1329 1566 670917070 670917307 2.890000e-81 313.0
14 TraesCS1D01G433100 chr1B 79.344 305 40 16 2882 3169 670918706 670919004 3.930000e-45 193.0
15 TraesCS1D01G433100 chr1B 91.346 104 8 1 3211 3313 670958959 670959062 1.450000e-29 141.0
16 TraesCS1D01G433100 chr1A 94.259 2003 110 3 979 2978 579576134 579574134 0.000000e+00 3057.0
17 TraesCS1D01G433100 chr1A 88.047 594 28 12 369 949 579576685 579576122 0.000000e+00 664.0
18 TraesCS1D01G433100 chr1A 85.333 675 43 12 3217 3858 579573823 579573172 0.000000e+00 647.0
19 TraesCS1D01G433100 chr1A 94.093 237 12 2 2979 3214 579574094 579573859 3.660000e-95 359.0
20 TraesCS1D01G433100 chr1A 81.039 385 62 9 3476 3858 579423107 579422732 2.910000e-76 296.0
21 TraesCS1D01G433100 chr1A 74.277 346 73 9 3519 3853 579383885 579383545 8.700000e-27 132.0
22 TraesCS1D01G433100 chrUn 88.299 1564 165 13 1329 2878 1944515 1946074 0.000000e+00 1858.0
23 TraesCS1D01G433100 chrUn 87.524 1531 184 6 1332 2858 1926992 1928519 0.000000e+00 1762.0
24 TraesCS1D01G433100 chr4D 98.916 369 4 0 1 369 388152809 388152441 0.000000e+00 660.0
25 TraesCS1D01G433100 chr4D 98.916 369 4 0 1 369 420928181 420928549 0.000000e+00 660.0
26 TraesCS1D01G433100 chr7D 98.645 369 5 0 1 369 638282445 638282813 0.000000e+00 654.0
27 TraesCS1D01G433100 chr7D 98.374 369 6 0 1 369 185087736 185087368 0.000000e+00 649.0
28 TraesCS1D01G433100 chr6D 98.103 369 7 0 1 369 107540526 107540158 0.000000e+00 643.0
29 TraesCS1D01G433100 chr5D 98.103 369 7 0 1 369 396973723 396974091 0.000000e+00 643.0
30 TraesCS1D01G433100 chr2D 97.561 369 9 0 1 369 498457534 498457902 1.960000e-177 632.0
31 TraesCS1D01G433100 chr7B 100.000 28 0 0 390 417 135050712 135050739 7.000000e-03 52.8
32 TraesCS1D01G433100 chr4B 100.000 28 0 0 390 417 193434630 193434603 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G433100 chr1D 482490413 482494270 3857 True 7125.00 7125 100.000000 1 3858 1 chr1D.!!$R2 3857
1 TraesCS1D01G433100 chr1D 482515534 482517065 1531 True 1940.00 1940 89.501000 1332 2871 1 chr1D.!!$R3 1539
2 TraesCS1D01G433100 chr1D 482369750 482371274 1524 False 1816.00 1816 88.178000 1332 2858 1 chr1D.!!$F4 1526
3 TraesCS1D01G433100 chr1D 482323885 482325554 1669 False 1759.00 1759 85.979000 1332 2975 1 chr1D.!!$F3 1643
4 TraesCS1D01G433100 chr1B 670899924 670901585 1661 False 1792.00 1792 86.426000 1332 2966 1 chr1B.!!$F1 1634
5 TraesCS1D01G433100 chr1B 670956097 670959062 2965 False 1041.50 3064 91.575000 369 3313 4 chr1B.!!$F4 2944
6 TraesCS1D01G433100 chr1B 670917070 670919004 1934 False 691.00 1567 86.192667 1329 3169 3 chr1B.!!$F3 1840
7 TraesCS1D01G433100 chr1A 579573172 579576685 3513 True 1181.75 3057 90.433000 369 3858 4 chr1A.!!$R3 3489
8 TraesCS1D01G433100 chrUn 1944515 1946074 1559 False 1858.00 1858 88.299000 1329 2878 1 chrUn.!!$F2 1549
9 TraesCS1D01G433100 chrUn 1926992 1928519 1527 False 1762.00 1762 87.524000 1332 2858 1 chrUn.!!$F1 1526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.037590 CCAATCCGGGGAGACAAACA 59.962 55.0 0.00 0.00 0.00 2.83 F
66 67 0.037734 AATCCGGGGAGACAAACACC 59.962 55.0 0.00 0.00 0.00 4.16 F
157 158 0.101399 CTCACGAAGACCCAGATCCG 59.899 60.0 0.00 0.00 0.00 4.18 F
175 176 0.165944 CGCGACCCAGTCATTGAAAC 59.834 55.0 0.00 0.00 32.09 2.78 F
231 232 0.175760 TTTCCTCAGCGGATCGAAGG 59.824 55.0 0.00 0.00 42.70 3.46 F
702 737 0.175989 CCTTCTAGTGCTTCCCGTCC 59.824 60.0 0.00 0.00 0.00 4.79 F
1761 1883 0.179020 TTGTGGAAGACCCTGCAGTG 60.179 55.0 13.81 3.15 35.38 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1687 1809 0.035820 AGGCGCTAATTGGAAACCGA 60.036 50.000 7.64 0.0 0.00 4.69 R
1894 2016 1.691976 ACAGGATGGTTGAACTCACGA 59.308 47.619 0.00 0.0 43.62 4.35 R
1904 2026 2.742372 GACGCGCACAGGATGGTT 60.742 61.111 5.73 0.0 43.62 3.67 R
2035 2157 3.128242 GTCCGTAGATTTTGAGGTCGAGA 59.872 47.826 0.00 0.0 0.00 4.04 R
2320 2442 3.072038 CAGAGATCCTTGTCCATGCCATA 59.928 47.826 0.00 0.0 0.00 2.74 R
2566 2688 0.318699 ACACACCGATGACTGTGACG 60.319 55.000 4.84 0.0 40.28 4.35 R
3504 3789 0.030638 CAAGTTTGTGGCGGAAGGTG 59.969 55.000 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.930826 ATACGGGTAATGGCCTGAAG 57.069 50.000 3.32 0.00 38.27 3.02
21 22 1.868713 TACGGGTAATGGCCTGAAGA 58.131 50.000 3.32 0.00 38.27 2.87
22 23 0.541863 ACGGGTAATGGCCTGAAGAG 59.458 55.000 3.32 0.00 38.27 2.85
23 24 0.830648 CGGGTAATGGCCTGAAGAGA 59.169 55.000 3.32 0.00 37.06 3.10
24 25 1.202580 CGGGTAATGGCCTGAAGAGAG 60.203 57.143 3.32 0.00 37.06 3.20
25 26 1.141858 GGGTAATGGCCTGAAGAGAGG 59.858 57.143 3.32 0.00 36.03 3.69
33 34 2.399916 CCTGAAGAGAGGCCAAAGAG 57.600 55.000 5.01 0.00 0.00 2.85
34 35 1.905215 CCTGAAGAGAGGCCAAAGAGA 59.095 52.381 5.01 0.00 0.00 3.10
35 36 2.304180 CCTGAAGAGAGGCCAAAGAGAA 59.696 50.000 5.01 0.00 0.00 2.87
36 37 3.333804 CTGAAGAGAGGCCAAAGAGAAC 58.666 50.000 5.01 0.00 0.00 3.01
37 38 2.039084 TGAAGAGAGGCCAAAGAGAACC 59.961 50.000 5.01 0.00 0.00 3.62
38 39 0.610687 AGAGAGGCCAAAGAGAACCG 59.389 55.000 5.01 0.00 0.00 4.44
39 40 0.608640 GAGAGGCCAAAGAGAACCGA 59.391 55.000 5.01 0.00 0.00 4.69
40 41 1.002087 GAGAGGCCAAAGAGAACCGAA 59.998 52.381 5.01 0.00 0.00 4.30
41 42 1.002544 AGAGGCCAAAGAGAACCGAAG 59.997 52.381 5.01 0.00 0.00 3.79
42 43 0.765510 AGGCCAAAGAGAACCGAAGT 59.234 50.000 5.01 0.00 0.00 3.01
43 44 1.143073 AGGCCAAAGAGAACCGAAGTT 59.857 47.619 5.01 0.00 39.54 2.66
52 53 1.084289 GAACCGAAGTTCCCAATCCG 58.916 55.000 0.00 0.00 45.65 4.18
53 54 0.322187 AACCGAAGTTCCCAATCCGG 60.322 55.000 0.00 0.00 42.30 5.14
63 64 2.868253 CCAATCCGGGGAGACAAAC 58.132 57.895 0.00 0.00 0.00 2.93
64 65 0.037590 CCAATCCGGGGAGACAAACA 59.962 55.000 0.00 0.00 0.00 2.83
65 66 1.165270 CAATCCGGGGAGACAAACAC 58.835 55.000 0.00 0.00 0.00 3.32
66 67 0.037734 AATCCGGGGAGACAAACACC 59.962 55.000 0.00 0.00 0.00 4.16
67 68 1.848886 ATCCGGGGAGACAAACACCC 61.849 60.000 0.00 0.00 46.50 4.61
71 72 3.154589 GGGAGACAAACACCCGATC 57.845 57.895 0.00 0.00 39.43 3.69
72 73 0.323629 GGGAGACAAACACCCGATCA 59.676 55.000 0.00 0.00 39.43 2.92
73 74 1.271163 GGGAGACAAACACCCGATCAA 60.271 52.381 0.00 0.00 39.43 2.57
74 75 2.076863 GGAGACAAACACCCGATCAAG 58.923 52.381 0.00 0.00 0.00 3.02
75 76 1.464997 GAGACAAACACCCGATCAAGC 59.535 52.381 0.00 0.00 0.00 4.01
76 77 1.202758 AGACAAACACCCGATCAAGCA 60.203 47.619 0.00 0.00 0.00 3.91
77 78 0.951558 ACAAACACCCGATCAAGCAC 59.048 50.000 0.00 0.00 0.00 4.40
78 79 0.110238 CAAACACCCGATCAAGCACG 60.110 55.000 0.00 0.00 0.00 5.34
79 80 1.852067 AAACACCCGATCAAGCACGC 61.852 55.000 0.00 0.00 0.00 5.34
80 81 2.434884 CACCCGATCAAGCACGCT 60.435 61.111 0.00 0.00 0.00 5.07
81 82 1.153647 CACCCGATCAAGCACGCTA 60.154 57.895 0.00 0.00 0.00 4.26
82 83 0.739462 CACCCGATCAAGCACGCTAA 60.739 55.000 0.00 0.00 0.00 3.09
83 84 0.460284 ACCCGATCAAGCACGCTAAG 60.460 55.000 0.00 0.00 0.00 2.18
84 85 1.154205 CCCGATCAAGCACGCTAAGG 61.154 60.000 0.00 0.00 0.00 2.69
85 86 1.154205 CCGATCAAGCACGCTAAGGG 61.154 60.000 0.00 0.00 0.00 3.95
86 87 0.460284 CGATCAAGCACGCTAAGGGT 60.460 55.000 0.00 0.00 0.00 4.34
87 88 1.291132 GATCAAGCACGCTAAGGGTC 58.709 55.000 0.00 0.00 0.00 4.46
88 89 0.460284 ATCAAGCACGCTAAGGGTCG 60.460 55.000 0.00 0.00 0.00 4.79
89 90 2.100631 CAAGCACGCTAAGGGTCGG 61.101 63.158 0.00 0.00 0.00 4.79
90 91 3.310860 AAGCACGCTAAGGGTCGGG 62.311 63.158 0.00 0.00 0.00 5.14
91 92 4.832608 GCACGCTAAGGGTCGGGG 62.833 72.222 0.00 0.00 0.00 5.73
92 93 3.072468 CACGCTAAGGGTCGGGGA 61.072 66.667 0.00 0.00 0.00 4.81
93 94 2.758737 ACGCTAAGGGTCGGGGAG 60.759 66.667 0.00 0.00 0.00 4.30
94 95 2.441532 CGCTAAGGGTCGGGGAGA 60.442 66.667 0.00 0.00 0.00 3.71
110 111 2.376109 GGAGACCTGTCGATTAGTCCA 58.624 52.381 7.74 0.00 34.09 4.02
111 112 2.359531 GGAGACCTGTCGATTAGTCCAG 59.640 54.545 7.74 0.67 34.09 3.86
116 117 4.730949 CCTGTCGATTAGTCCAGGTAAA 57.269 45.455 8.88 0.00 39.70 2.01
117 118 5.080969 CCTGTCGATTAGTCCAGGTAAAA 57.919 43.478 8.88 0.00 39.70 1.52
118 119 4.868734 CCTGTCGATTAGTCCAGGTAAAAC 59.131 45.833 8.88 0.00 39.70 2.43
119 120 4.487948 TGTCGATTAGTCCAGGTAAAACG 58.512 43.478 0.00 0.00 0.00 3.60
120 121 4.218200 TGTCGATTAGTCCAGGTAAAACGA 59.782 41.667 0.00 0.00 0.00 3.85
121 122 4.797349 GTCGATTAGTCCAGGTAAAACGAG 59.203 45.833 0.00 0.00 0.00 4.18
122 123 3.550678 CGATTAGTCCAGGTAAAACGAGC 59.449 47.826 0.00 0.00 0.00 5.03
123 124 3.323751 TTAGTCCAGGTAAAACGAGCC 57.676 47.619 0.00 0.00 0.00 4.70
124 125 0.323957 AGTCCAGGTAAAACGAGCCC 59.676 55.000 0.00 0.00 0.00 5.19
125 126 0.675837 GTCCAGGTAAAACGAGCCCC 60.676 60.000 0.00 0.00 0.00 5.80
126 127 1.743995 CCAGGTAAAACGAGCCCCG 60.744 63.158 0.00 0.00 45.44 5.73
127 128 1.294138 CAGGTAAAACGAGCCCCGA 59.706 57.895 2.99 0.00 41.76 5.14
128 129 1.017701 CAGGTAAAACGAGCCCCGAC 61.018 60.000 2.99 0.00 41.76 4.79
129 130 1.742880 GGTAAAACGAGCCCCGACC 60.743 63.158 2.99 0.00 41.76 4.79
130 131 1.742880 GTAAAACGAGCCCCGACCC 60.743 63.158 2.99 0.00 41.76 4.46
131 132 1.914764 TAAAACGAGCCCCGACCCT 60.915 57.895 2.99 0.00 41.76 4.34
132 133 2.175035 TAAAACGAGCCCCGACCCTG 62.175 60.000 2.99 0.00 41.76 4.45
136 137 2.043248 GAGCCCCGACCCTGTCTA 60.043 66.667 0.00 0.00 0.00 2.59
137 138 2.042843 AGCCCCGACCCTGTCTAG 60.043 66.667 0.00 0.00 0.00 2.43
138 139 3.851128 GCCCCGACCCTGTCTAGC 61.851 72.222 0.00 0.00 0.00 3.42
139 140 2.042843 CCCCGACCCTGTCTAGCT 60.043 66.667 0.00 0.00 0.00 3.32
140 141 2.128507 CCCCGACCCTGTCTAGCTC 61.129 68.421 0.00 0.00 0.00 4.09
141 142 1.379977 CCCGACCCTGTCTAGCTCA 60.380 63.158 0.00 0.00 0.00 4.26
142 143 1.668101 CCCGACCCTGTCTAGCTCAC 61.668 65.000 0.00 0.00 0.00 3.51
143 144 1.429825 CGACCCTGTCTAGCTCACG 59.570 63.158 0.00 0.00 0.00 4.35
144 145 1.025113 CGACCCTGTCTAGCTCACGA 61.025 60.000 0.00 0.00 0.00 4.35
145 146 1.174783 GACCCTGTCTAGCTCACGAA 58.825 55.000 0.00 0.00 0.00 3.85
146 147 1.133407 GACCCTGTCTAGCTCACGAAG 59.867 57.143 0.00 0.00 0.00 3.79
147 148 1.271982 ACCCTGTCTAGCTCACGAAGA 60.272 52.381 0.00 0.00 0.00 2.87
148 149 1.133407 CCCTGTCTAGCTCACGAAGAC 59.867 57.143 6.63 6.63 40.05 3.01
149 150 1.133407 CCTGTCTAGCTCACGAAGACC 59.867 57.143 10.38 0.00 39.10 3.85
150 151 1.133407 CTGTCTAGCTCACGAAGACCC 59.867 57.143 10.38 0.00 39.10 4.46
151 152 1.174783 GTCTAGCTCACGAAGACCCA 58.825 55.000 2.64 0.00 34.79 4.51
152 153 1.133407 GTCTAGCTCACGAAGACCCAG 59.867 57.143 2.64 0.00 34.79 4.45
153 154 1.004394 TCTAGCTCACGAAGACCCAGA 59.996 52.381 0.00 0.00 0.00 3.86
154 155 2.028130 CTAGCTCACGAAGACCCAGAT 58.972 52.381 0.00 0.00 0.00 2.90
155 156 0.820871 AGCTCACGAAGACCCAGATC 59.179 55.000 0.00 0.00 0.00 2.75
156 157 0.179097 GCTCACGAAGACCCAGATCC 60.179 60.000 0.00 0.00 0.00 3.36
157 158 0.101399 CTCACGAAGACCCAGATCCG 59.899 60.000 0.00 0.00 0.00 4.18
158 159 1.519455 CACGAAGACCCAGATCCGC 60.519 63.158 0.00 0.00 0.00 5.54
159 160 2.278857 CGAAGACCCAGATCCGCG 60.279 66.667 0.00 0.00 0.00 6.46
160 161 2.771639 CGAAGACCCAGATCCGCGA 61.772 63.158 8.23 0.00 0.00 5.87
161 162 1.227002 GAAGACCCAGATCCGCGAC 60.227 63.158 8.23 0.00 0.00 5.19
162 163 2.630592 GAAGACCCAGATCCGCGACC 62.631 65.000 8.23 0.00 0.00 4.79
163 164 4.222847 GACCCAGATCCGCGACCC 62.223 72.222 8.23 0.00 0.00 4.46
165 166 4.227134 CCCAGATCCGCGACCCAG 62.227 72.222 8.23 0.00 0.00 4.45
166 167 3.461773 CCAGATCCGCGACCCAGT 61.462 66.667 8.23 0.00 0.00 4.00
167 168 2.105128 CAGATCCGCGACCCAGTC 59.895 66.667 8.23 0.00 0.00 3.51
168 169 2.362503 AGATCCGCGACCCAGTCA 60.363 61.111 8.23 0.00 32.09 3.41
169 170 1.758514 AGATCCGCGACCCAGTCAT 60.759 57.895 8.23 0.00 32.09 3.06
170 171 1.144057 GATCCGCGACCCAGTCATT 59.856 57.895 8.23 0.00 32.09 2.57
171 172 1.153369 ATCCGCGACCCAGTCATTG 60.153 57.895 8.23 0.00 32.09 2.82
172 173 1.613317 ATCCGCGACCCAGTCATTGA 61.613 55.000 8.23 0.00 32.09 2.57
173 174 1.375396 CCGCGACCCAGTCATTGAA 60.375 57.895 8.23 0.00 32.09 2.69
174 175 0.953471 CCGCGACCCAGTCATTGAAA 60.953 55.000 8.23 0.00 32.09 2.69
175 176 0.165944 CGCGACCCAGTCATTGAAAC 59.834 55.000 0.00 0.00 32.09 2.78
176 177 0.165944 GCGACCCAGTCATTGAAACG 59.834 55.000 0.00 0.00 32.09 3.60
177 178 1.790755 CGACCCAGTCATTGAAACGA 58.209 50.000 0.00 0.00 32.09 3.85
178 179 1.459592 CGACCCAGTCATTGAAACGAC 59.540 52.381 0.00 0.00 32.09 4.34
179 180 1.459592 GACCCAGTCATTGAAACGACG 59.540 52.381 0.00 0.00 37.23 5.12
180 181 0.165944 CCCAGTCATTGAAACGACGC 59.834 55.000 0.00 0.00 37.23 5.19
181 182 0.865111 CCAGTCATTGAAACGACGCA 59.135 50.000 0.00 0.00 37.23 5.24
182 183 1.464608 CCAGTCATTGAAACGACGCAT 59.535 47.619 0.00 0.00 37.23 4.73
183 184 2.474526 CCAGTCATTGAAACGACGCATC 60.475 50.000 0.00 0.00 37.23 3.91
184 185 1.732259 AGTCATTGAAACGACGCATCC 59.268 47.619 0.00 0.00 37.23 3.51
185 186 1.083489 TCATTGAAACGACGCATCCC 58.917 50.000 0.00 0.00 0.00 3.85
186 187 0.247655 CATTGAAACGACGCATCCCG 60.248 55.000 0.00 0.00 44.21 5.14
187 188 1.366111 ATTGAAACGACGCATCCCGG 61.366 55.000 0.00 0.00 42.52 5.73
188 189 3.861263 GAAACGACGCATCCCGGC 61.861 66.667 0.00 0.00 43.15 6.13
193 194 2.828549 GACGCATCCCGGCCAAAT 60.829 61.111 2.24 0.00 39.74 2.32
194 195 2.828549 ACGCATCCCGGCCAAATC 60.829 61.111 2.24 0.00 42.52 2.17
195 196 3.595758 CGCATCCCGGCCAAATCC 61.596 66.667 2.24 0.00 0.00 3.01
196 197 2.441901 GCATCCCGGCCAAATCCA 60.442 61.111 2.24 0.00 0.00 3.41
197 198 2.785425 GCATCCCGGCCAAATCCAC 61.785 63.158 2.24 0.00 0.00 4.02
198 199 2.127232 CATCCCGGCCAAATCCACC 61.127 63.158 2.24 0.00 0.00 4.61
199 200 3.373932 ATCCCGGCCAAATCCACCC 62.374 63.158 2.24 0.00 0.00 4.61
201 202 4.418328 CCGGCCAAATCCACCCGA 62.418 66.667 2.24 0.00 43.20 5.14
202 203 2.824041 CGGCCAAATCCACCCGAG 60.824 66.667 2.24 0.00 43.20 4.63
203 204 2.674754 GGCCAAATCCACCCGAGA 59.325 61.111 0.00 0.00 0.00 4.04
204 205 1.452108 GGCCAAATCCACCCGAGAG 60.452 63.158 0.00 0.00 0.00 3.20
205 206 1.299976 GCCAAATCCACCCGAGAGT 59.700 57.895 0.00 0.00 0.00 3.24
206 207 0.322546 GCCAAATCCACCCGAGAGTT 60.323 55.000 0.00 0.00 0.00 3.01
207 208 1.065709 GCCAAATCCACCCGAGAGTTA 60.066 52.381 0.00 0.00 0.00 2.24
208 209 2.421529 GCCAAATCCACCCGAGAGTTAT 60.422 50.000 0.00 0.00 0.00 1.89
209 210 3.886123 CCAAATCCACCCGAGAGTTATT 58.114 45.455 0.00 0.00 0.00 1.40
210 211 3.877508 CCAAATCCACCCGAGAGTTATTC 59.122 47.826 0.00 0.00 0.00 1.75
211 212 4.384208 CCAAATCCACCCGAGAGTTATTCT 60.384 45.833 0.00 0.00 39.43 2.40
212 213 5.186198 CAAATCCACCCGAGAGTTATTCTT 58.814 41.667 0.00 0.00 35.87 2.52
213 214 5.437191 AATCCACCCGAGAGTTATTCTTT 57.563 39.130 0.00 0.00 35.87 2.52
214 215 4.903045 TCCACCCGAGAGTTATTCTTTT 57.097 40.909 0.00 0.00 35.87 2.27
215 216 4.828829 TCCACCCGAGAGTTATTCTTTTC 58.171 43.478 0.00 0.00 35.87 2.29
216 217 3.939592 CCACCCGAGAGTTATTCTTTTCC 59.060 47.826 0.00 0.00 35.87 3.13
217 218 4.323562 CCACCCGAGAGTTATTCTTTTCCT 60.324 45.833 0.00 0.00 35.87 3.36
218 219 4.870991 CACCCGAGAGTTATTCTTTTCCTC 59.129 45.833 0.00 0.00 35.87 3.71
219 220 4.530946 ACCCGAGAGTTATTCTTTTCCTCA 59.469 41.667 0.00 0.00 35.87 3.86
220 221 5.112686 CCCGAGAGTTATTCTTTTCCTCAG 58.887 45.833 0.00 0.00 35.87 3.35
221 222 4.568760 CCGAGAGTTATTCTTTTCCTCAGC 59.431 45.833 0.00 0.00 35.87 4.26
222 223 4.266502 CGAGAGTTATTCTTTTCCTCAGCG 59.733 45.833 0.00 0.00 35.87 5.18
223 224 4.508662 AGAGTTATTCTTTTCCTCAGCGG 58.491 43.478 0.00 0.00 29.61 5.52
224 225 4.223032 AGAGTTATTCTTTTCCTCAGCGGA 59.777 41.667 0.00 0.00 33.98 5.54
225 226 5.104259 AGTTATTCTTTTCCTCAGCGGAT 57.896 39.130 0.00 0.00 42.70 4.18
226 227 5.119694 AGTTATTCTTTTCCTCAGCGGATC 58.880 41.667 0.00 0.00 42.70 3.36
227 228 2.010145 TTCTTTTCCTCAGCGGATCG 57.990 50.000 0.00 0.00 42.70 3.69
228 229 1.182667 TCTTTTCCTCAGCGGATCGA 58.817 50.000 0.00 0.00 42.70 3.59
229 230 1.548719 TCTTTTCCTCAGCGGATCGAA 59.451 47.619 0.00 0.00 42.70 3.71
230 231 1.929836 CTTTTCCTCAGCGGATCGAAG 59.070 52.381 0.00 0.00 42.70 3.79
231 232 0.175760 TTTCCTCAGCGGATCGAAGG 59.824 55.000 0.00 0.00 42.70 3.46
232 233 0.683179 TTCCTCAGCGGATCGAAGGA 60.683 55.000 0.00 0.00 42.70 3.36
233 234 1.103987 TCCTCAGCGGATCGAAGGAG 61.104 60.000 0.00 0.00 36.69 3.69
234 235 1.103987 CCTCAGCGGATCGAAGGAGA 61.104 60.000 0.00 0.00 33.16 3.71
235 236 0.958091 CTCAGCGGATCGAAGGAGAT 59.042 55.000 0.00 0.00 0.00 2.75
236 237 1.339610 CTCAGCGGATCGAAGGAGATT 59.660 52.381 0.00 0.00 0.00 2.40
237 238 1.067669 TCAGCGGATCGAAGGAGATTG 59.932 52.381 0.00 0.00 0.00 2.67
238 239 1.067669 CAGCGGATCGAAGGAGATTGA 59.932 52.381 0.00 0.00 0.00 2.57
239 240 1.757118 AGCGGATCGAAGGAGATTGAA 59.243 47.619 0.00 0.00 0.00 2.69
240 241 2.131183 GCGGATCGAAGGAGATTGAAG 58.869 52.381 0.00 0.00 0.00 3.02
241 242 2.482142 GCGGATCGAAGGAGATTGAAGT 60.482 50.000 0.00 0.00 0.00 3.01
242 243 3.376540 CGGATCGAAGGAGATTGAAGTC 58.623 50.000 0.00 0.00 0.00 3.01
243 244 3.376540 GGATCGAAGGAGATTGAAGTCG 58.623 50.000 0.00 0.00 0.00 4.18
244 245 2.279582 TCGAAGGAGATTGAAGTCGC 57.720 50.000 0.00 0.00 0.00 5.19
245 246 1.135083 TCGAAGGAGATTGAAGTCGCC 60.135 52.381 0.00 0.00 38.23 5.54
247 248 2.545731 GAAGGAGATTGAAGTCGCCTC 58.454 52.381 0.00 0.00 46.02 4.70
248 249 0.827368 AGGAGATTGAAGTCGCCTCC 59.173 55.000 0.00 0.00 43.81 4.30
249 250 0.537188 GGAGATTGAAGTCGCCTCCA 59.463 55.000 0.00 0.00 42.15 3.86
250 251 1.066143 GGAGATTGAAGTCGCCTCCAA 60.066 52.381 0.00 0.00 42.15 3.53
251 252 2.003301 GAGATTGAAGTCGCCTCCAAC 58.997 52.381 0.00 0.00 0.00 3.77
252 253 1.087501 GATTGAAGTCGCCTCCAACC 58.912 55.000 0.00 0.00 0.00 3.77
253 254 0.400213 ATTGAAGTCGCCTCCAACCA 59.600 50.000 0.00 0.00 0.00 3.67
254 255 0.534203 TTGAAGTCGCCTCCAACCAC 60.534 55.000 0.00 0.00 0.00 4.16
255 256 2.027625 GAAGTCGCCTCCAACCACG 61.028 63.158 0.00 0.00 0.00 4.94
256 257 2.430382 GAAGTCGCCTCCAACCACGA 62.430 60.000 0.00 0.00 0.00 4.35
257 258 2.737376 GTCGCCTCCAACCACGAC 60.737 66.667 0.00 0.00 46.64 4.34
258 259 3.998672 TCGCCTCCAACCACGACC 61.999 66.667 0.00 0.00 0.00 4.79
261 262 4.388499 CCTCCAACCACGACCGGG 62.388 72.222 6.32 0.00 0.00 5.73
262 263 3.307906 CTCCAACCACGACCGGGA 61.308 66.667 6.32 0.00 0.00 5.14
263 264 3.296709 CTCCAACCACGACCGGGAG 62.297 68.421 6.32 0.61 39.21 4.30
277 278 4.816984 GGAGGGTCGCGGAGGAGA 62.817 72.222 6.13 0.00 0.00 3.71
278 279 2.519780 GAGGGTCGCGGAGGAGAT 60.520 66.667 6.13 0.00 0.00 2.75
279 280 2.519780 AGGGTCGCGGAGGAGATC 60.520 66.667 6.13 0.00 0.00 2.75
280 281 2.519780 GGGTCGCGGAGGAGATCT 60.520 66.667 6.13 0.00 0.00 2.75
281 282 2.128507 GGGTCGCGGAGGAGATCTT 61.129 63.158 6.13 0.00 0.00 2.40
282 283 1.066587 GGTCGCGGAGGAGATCTTG 59.933 63.158 6.13 0.00 0.00 3.02
283 284 1.066587 GTCGCGGAGGAGATCTTGG 59.933 63.158 6.13 0.00 0.00 3.61
284 285 2.279784 CGCGGAGGAGATCTTGGC 60.280 66.667 0.00 0.00 0.00 4.52
285 286 2.903357 GCGGAGGAGATCTTGGCA 59.097 61.111 0.00 0.00 0.00 4.92
286 287 1.449353 GCGGAGGAGATCTTGGCAT 59.551 57.895 0.00 0.00 0.00 4.40
287 288 0.883814 GCGGAGGAGATCTTGGCATG 60.884 60.000 0.00 0.00 0.00 4.06
288 289 0.755079 CGGAGGAGATCTTGGCATGA 59.245 55.000 5.47 5.47 0.00 3.07
289 290 1.139654 CGGAGGAGATCTTGGCATGAA 59.860 52.381 7.20 0.00 0.00 2.57
290 291 2.806019 CGGAGGAGATCTTGGCATGAAG 60.806 54.545 7.20 0.00 0.00 3.02
291 292 2.220313 GAGGAGATCTTGGCATGAAGC 58.780 52.381 7.20 3.23 44.65 3.86
292 293 1.845143 AGGAGATCTTGGCATGAAGCT 59.155 47.619 7.20 7.83 44.79 3.74
293 294 2.158784 AGGAGATCTTGGCATGAAGCTC 60.159 50.000 19.48 19.48 44.79 4.09
294 295 2.158784 GGAGATCTTGGCATGAAGCTCT 60.159 50.000 23.31 15.85 44.79 4.09
295 296 2.873472 GAGATCTTGGCATGAAGCTCTG 59.127 50.000 19.98 0.00 44.79 3.35
296 297 1.334243 GATCTTGGCATGAAGCTCTGC 59.666 52.381 7.20 7.21 44.79 4.26
301 302 2.864114 GCATGAAGCTCTGCCAAGA 58.136 52.632 0.00 0.00 41.15 3.02
302 303 1.171308 GCATGAAGCTCTGCCAAGAA 58.829 50.000 0.00 0.00 41.15 2.52
303 304 1.132643 GCATGAAGCTCTGCCAAGAAG 59.867 52.381 0.00 0.00 41.15 2.85
304 305 1.743958 CATGAAGCTCTGCCAAGAAGG 59.256 52.381 0.00 0.00 41.84 3.46
313 314 2.897350 CCAAGAAGGCGGCGGATC 60.897 66.667 9.78 3.71 0.00 3.36
314 315 3.264897 CAAGAAGGCGGCGGATCG 61.265 66.667 9.78 0.00 0.00 3.69
315 316 3.458163 AAGAAGGCGGCGGATCGA 61.458 61.111 9.78 0.00 0.00 3.59
316 317 3.718210 AAGAAGGCGGCGGATCGAC 62.718 63.158 9.78 0.00 38.69 4.20
321 322 4.492160 GCGGCGGATCGACTGTGA 62.492 66.667 9.78 0.00 29.68 3.58
322 323 2.413351 CGGCGGATCGACTGTGAT 59.587 61.111 0.00 0.00 29.68 3.06
323 324 1.658717 CGGCGGATCGACTGTGATC 60.659 63.158 0.00 10.05 43.26 2.92
324 325 1.658717 GGCGGATCGACTGTGATCG 60.659 63.158 11.43 0.00 44.61 3.69
325 326 1.658717 GCGGATCGACTGTGATCGG 60.659 63.158 16.13 16.13 44.61 4.18
326 327 1.658717 CGGATCGACTGTGATCGGC 60.659 63.158 11.43 0.00 44.61 5.54
327 328 1.300233 GGATCGACTGTGATCGGCC 60.300 63.158 0.00 0.00 44.61 6.13
328 329 1.658717 GATCGACTGTGATCGGCCG 60.659 63.158 22.12 22.12 42.50 6.13
329 330 3.138930 ATCGACTGTGATCGGCCGG 62.139 63.158 27.83 10.66 42.50 6.13
330 331 3.822192 CGACTGTGATCGGCCGGA 61.822 66.667 27.83 12.89 38.47 5.14
331 332 2.202756 GACTGTGATCGGCCGGAC 60.203 66.667 27.83 19.54 0.00 4.79
332 333 3.718210 GACTGTGATCGGCCGGACC 62.718 68.421 27.83 15.07 0.00 4.46
333 334 3.770040 CTGTGATCGGCCGGACCA 61.770 66.667 27.83 17.63 39.03 4.02
334 335 3.080765 TGTGATCGGCCGGACCAT 61.081 61.111 27.83 11.69 39.03 3.55
335 336 1.744320 CTGTGATCGGCCGGACCATA 61.744 60.000 27.83 16.96 39.03 2.74
336 337 1.006102 GTGATCGGCCGGACCATAG 60.006 63.158 27.83 0.00 39.03 2.23
337 338 1.152631 TGATCGGCCGGACCATAGA 60.153 57.895 27.83 2.60 39.03 1.98
338 339 1.289380 GATCGGCCGGACCATAGAC 59.711 63.158 27.83 2.67 39.03 2.59
339 340 2.156051 GATCGGCCGGACCATAGACC 62.156 65.000 27.83 0.00 39.03 3.85
340 341 2.939760 ATCGGCCGGACCATAGACCA 62.940 60.000 27.83 0.12 39.03 4.02
341 342 2.504519 GGCCGGACCATAGACCAC 59.495 66.667 5.05 0.00 38.86 4.16
342 343 2.064581 GGCCGGACCATAGACCACT 61.065 63.158 5.05 0.00 38.86 4.00
343 344 0.757935 GGCCGGACCATAGACCACTA 60.758 60.000 5.05 0.00 38.86 2.74
344 345 1.339097 GCCGGACCATAGACCACTAT 58.661 55.000 5.05 0.00 39.59 2.12
357 358 5.301835 AGACCACTATGATCTCCCATTTG 57.698 43.478 0.00 0.00 0.00 2.32
358 359 4.971282 AGACCACTATGATCTCCCATTTGA 59.029 41.667 0.00 0.00 0.00 2.69
359 360 5.429762 AGACCACTATGATCTCCCATTTGAA 59.570 40.000 0.00 0.00 0.00 2.69
360 361 5.688807 ACCACTATGATCTCCCATTTGAAG 58.311 41.667 0.00 0.00 0.00 3.02
361 362 5.192522 ACCACTATGATCTCCCATTTGAAGT 59.807 40.000 0.00 0.00 0.00 3.01
362 363 6.125029 CCACTATGATCTCCCATTTGAAGTT 58.875 40.000 0.00 0.00 0.00 2.66
363 364 6.261826 CCACTATGATCTCCCATTTGAAGTTC 59.738 42.308 0.00 0.00 0.00 3.01
364 365 6.825213 CACTATGATCTCCCATTTGAAGTTCA 59.175 38.462 0.08 0.08 0.00 3.18
365 366 6.825721 ACTATGATCTCCCATTTGAAGTTCAC 59.174 38.462 4.68 0.00 0.00 3.18
366 367 4.002982 TGATCTCCCATTTGAAGTTCACG 58.997 43.478 4.68 0.00 0.00 4.35
367 368 3.485463 TCTCCCATTTGAAGTTCACGT 57.515 42.857 4.68 0.00 0.00 4.49
438 439 0.740868 CATTCGATGCACCTGGTCGT 60.741 55.000 0.00 0.00 36.77 4.34
510 526 3.562182 ACAAAGATTTTGGGACGAAGGT 58.438 40.909 6.51 0.00 0.00 3.50
564 580 2.437359 GACTTGCGGGCTCAGCAT 60.437 61.111 0.00 0.00 44.74 3.79
596 612 2.029918 TCTGACAAGACACGAGACATGG 60.030 50.000 0.00 0.00 0.00 3.66
642 658 0.458543 CATCCGTCCAAGTCGAGGTG 60.459 60.000 0.00 0.00 0.00 4.00
669 685 1.732259 GAATTTCGTCCACGTGATGCT 59.268 47.619 19.30 0.00 40.80 3.79
697 732 2.701107 GTGGAACCTTCTAGTGCTTCC 58.299 52.381 0.00 0.00 0.00 3.46
698 733 1.628846 TGGAACCTTCTAGTGCTTCCC 59.371 52.381 8.83 0.00 31.00 3.97
699 734 1.405661 GGAACCTTCTAGTGCTTCCCG 60.406 57.143 0.00 0.00 0.00 5.14
700 735 1.275573 GAACCTTCTAGTGCTTCCCGT 59.724 52.381 0.00 0.00 0.00 5.28
701 736 0.896226 ACCTTCTAGTGCTTCCCGTC 59.104 55.000 0.00 0.00 0.00 4.79
702 737 0.175989 CCTTCTAGTGCTTCCCGTCC 59.824 60.000 0.00 0.00 0.00 4.79
703 738 0.895530 CTTCTAGTGCTTCCCGTCCA 59.104 55.000 0.00 0.00 0.00 4.02
704 739 0.606604 TTCTAGTGCTTCCCGTCCAC 59.393 55.000 0.00 0.00 0.00 4.02
705 740 1.153823 CTAGTGCTTCCCGTCCACG 60.154 63.158 0.00 0.00 34.79 4.94
706 741 1.874345 CTAGTGCTTCCCGTCCACGT 61.874 60.000 0.00 0.00 37.74 4.49
707 742 2.149803 TAGTGCTTCCCGTCCACGTG 62.150 60.000 9.08 9.08 37.74 4.49
708 743 4.980805 TGCTTCCCGTCCACGTGC 62.981 66.667 10.91 0.00 37.74 5.34
825 876 4.741781 GGATGTGTGTGTGCGCGC 62.742 66.667 27.26 27.26 36.27 6.86
846 897 1.980844 GCGCGCGTGTATATAAAGCTA 59.019 47.619 32.35 0.00 0.00 3.32
848 899 3.231965 CGCGCGTGTATATAAAGCTAGT 58.768 45.455 24.19 0.00 0.00 2.57
908 959 1.099689 ACCACCAGTTGTCCGTTTTG 58.900 50.000 0.00 0.00 0.00 2.44
936 990 2.281761 AGCTGGCTTCAACGGTGG 60.282 61.111 0.00 0.00 0.00 4.61
937 991 2.281484 GCTGGCTTCAACGGTGGA 60.281 61.111 0.00 0.00 0.00 4.02
938 992 2.328099 GCTGGCTTCAACGGTGGAG 61.328 63.158 3.67 3.67 32.83 3.86
939 993 1.371183 CTGGCTTCAACGGTGGAGA 59.629 57.895 14.63 0.00 30.95 3.71
940 994 0.671781 CTGGCTTCAACGGTGGAGAG 60.672 60.000 14.63 0.00 30.95 3.20
941 995 1.118965 TGGCTTCAACGGTGGAGAGA 61.119 55.000 14.63 0.00 30.95 3.10
942 996 0.390472 GGCTTCAACGGTGGAGAGAG 60.390 60.000 14.63 0.00 30.95 3.20
943 997 0.603569 GCTTCAACGGTGGAGAGAGA 59.396 55.000 14.63 0.00 30.95 3.10
944 998 1.403514 GCTTCAACGGTGGAGAGAGAG 60.404 57.143 14.63 0.00 30.95 3.20
945 999 2.163509 CTTCAACGGTGGAGAGAGAGA 58.836 52.381 1.09 0.00 30.95 3.10
946 1000 1.827681 TCAACGGTGGAGAGAGAGAG 58.172 55.000 0.00 0.00 0.00 3.20
947 1001 1.351350 TCAACGGTGGAGAGAGAGAGA 59.649 52.381 0.00 0.00 0.00 3.10
948 1002 1.742831 CAACGGTGGAGAGAGAGAGAG 59.257 57.143 0.00 0.00 0.00 3.20
949 1003 1.281419 ACGGTGGAGAGAGAGAGAGA 58.719 55.000 0.00 0.00 0.00 3.10
950 1004 1.209504 ACGGTGGAGAGAGAGAGAGAG 59.790 57.143 0.00 0.00 0.00 3.20
951 1005 1.484653 CGGTGGAGAGAGAGAGAGAGA 59.515 57.143 0.00 0.00 0.00 3.10
952 1006 2.483714 CGGTGGAGAGAGAGAGAGAGAG 60.484 59.091 0.00 0.00 0.00 3.20
953 1007 2.771943 GGTGGAGAGAGAGAGAGAGAGA 59.228 54.545 0.00 0.00 0.00 3.10
954 1008 3.181461 GGTGGAGAGAGAGAGAGAGAGAG 60.181 56.522 0.00 0.00 0.00 3.20
955 1009 3.706594 GTGGAGAGAGAGAGAGAGAGAGA 59.293 52.174 0.00 0.00 0.00 3.10
956 1010 3.963374 TGGAGAGAGAGAGAGAGAGAGAG 59.037 52.174 0.00 0.00 0.00 3.20
957 1011 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
958 1012 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
959 1013 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
960 1014 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
961 1015 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
962 1016 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
963 1017 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
964 1018 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
965 1019 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
966 1020 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
967 1021 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
968 1022 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
969 1023 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
970 1024 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
971 1025 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
972 1026 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
973 1027 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
974 1028 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
975 1029 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
976 1030 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
977 1031 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1133 1194 1.543944 TTGATGGAGGCTGCAGACGA 61.544 55.000 20.43 4.39 0.00 4.20
1313 1374 4.827087 CGCTCCTGTGCTGCCGAT 62.827 66.667 0.00 0.00 0.00 4.18
1376 1437 2.230508 ACTTCAAGACGTTCTATGGCGA 59.769 45.455 0.00 0.00 0.00 5.54
1439 1500 1.168407 ACCGACGTCGAGAAAGGTGA 61.168 55.000 37.65 0.00 43.02 4.02
1552 1613 1.982073 GACCCTCCGTGTACGTACCG 61.982 65.000 22.43 22.16 37.74 4.02
1585 1699 2.035832 AGCATTCCACCAAAAAGTTCCG 59.964 45.455 0.00 0.00 0.00 4.30
1687 1809 1.675641 GACATGGCCGTTCCTGCTT 60.676 57.895 0.00 0.00 35.26 3.91
1761 1883 0.179020 TTGTGGAAGACCCTGCAGTG 60.179 55.000 13.81 3.15 35.38 3.66
1894 2016 0.322277 TCTACTTCGAGGCTGTCCGT 60.322 55.000 0.00 0.00 37.47 4.69
1904 2026 1.007734 GCTGTCCGTCGTGAGTTCA 60.008 57.895 0.00 0.00 0.00 3.18
2035 2157 0.541392 TCATGGCGCCTATCTTGTGT 59.459 50.000 29.70 0.00 0.00 3.72
2066 2188 5.739959 TCAAAATCTACGGACAATGGATGA 58.260 37.500 0.00 0.00 0.00 2.92
2320 2442 4.477975 GCACCTAGCGTCGCGTCT 62.478 66.667 12.30 4.72 0.00 4.18
2408 2530 1.801913 CTCTACGTGTCGCTGGTGC 60.802 63.158 0.00 0.00 0.00 5.01
2413 2535 3.720193 GTGTCGCTGGTGCTGCAG 61.720 66.667 10.11 10.11 36.97 4.41
2438 2560 0.255033 CCTCTTTCGGGGGTTTAGGG 59.745 60.000 0.00 0.00 0.00 3.53
2545 2667 2.203480 ACACGGGCATTGGCAGTT 60.203 55.556 13.09 3.38 43.71 3.16
2566 2688 1.359459 GGTTGTCAGGAATCGCCGTC 61.359 60.000 0.00 0.00 43.43 4.79
2577 2699 1.934220 ATCGCCGTCGTCACAGTCAT 61.934 55.000 0.00 0.00 36.96 3.06
2581 2703 1.209383 CGTCGTCACAGTCATCGGT 59.791 57.895 0.00 0.00 0.00 4.69
2593 2715 0.973632 TCATCGGTGTGTTAGCCACT 59.026 50.000 0.00 0.00 44.81 4.00
2761 2889 5.163652 CCCGAATTTCAGTTCCTATTCCAAC 60.164 44.000 0.00 0.00 0.00 3.77
2766 2894 2.026262 TCAGTTCCTATTCCAACCAGGC 60.026 50.000 0.00 0.00 37.29 4.85
2768 2896 0.629058 TTCCTATTCCAACCAGGCCC 59.371 55.000 0.00 0.00 37.29 5.80
2853 2984 1.183549 GGGCACGGAAGAGAAGAGTA 58.816 55.000 0.00 0.00 0.00 2.59
2863 2994 5.757320 CGGAAGAGAAGAGTATTAGACGGTA 59.243 44.000 0.00 0.00 0.00 4.02
2871 3002 4.833380 AGAGTATTAGACGGTATGGTGCAT 59.167 41.667 0.00 0.00 0.00 3.96
2888 3057 5.709631 TGGTGCATAACATGTTGATTAGTGT 59.290 36.000 21.42 0.00 0.00 3.55
2898 3067 8.492673 ACATGTTGATTAGTGTAACCTGTATG 57.507 34.615 0.00 0.00 37.80 2.39
2906 3075 5.407407 AGTGTAACCTGTATGGAGTTCTG 57.593 43.478 0.00 0.00 37.80 3.02
2908 3077 6.014647 AGTGTAACCTGTATGGAGTTCTGTA 58.985 40.000 0.00 0.00 37.80 2.74
2985 3194 7.613801 AGATTAGTAGCGATATCCTGACTTGAT 59.386 37.037 0.00 0.00 0.00 2.57
3033 3242 8.488764 GGTTATATACTTTCGTTCATCAGAAGC 58.511 37.037 0.00 0.00 33.63 3.86
3046 3255 6.500684 TCATCAGAAGCAAGTTACATTTCC 57.499 37.500 0.00 0.00 0.00 3.13
3048 3270 5.947228 TCAGAAGCAAGTTACATTTCCTG 57.053 39.130 0.00 0.00 0.00 3.86
3056 3278 6.660949 AGCAAGTTACATTTCCTGCTCTATTT 59.339 34.615 0.00 0.00 0.00 1.40
3232 3488 1.933853 GATGTGTTGATGGCGGTACTC 59.066 52.381 0.00 0.00 0.00 2.59
3248 3504 4.396790 CGGTACTCTCAGACTAAGCTTTCT 59.603 45.833 3.20 0.00 0.00 2.52
3255 3511 9.026121 ACTCTCAGACTAAGCTTTCTTTACATA 57.974 33.333 3.20 0.00 33.85 2.29
3319 3575 6.216801 TCCGGCATCCATATAGTTACATAC 57.783 41.667 0.00 0.00 0.00 2.39
3320 3576 5.041287 CCGGCATCCATATAGTTACATACG 58.959 45.833 0.00 0.00 0.00 3.06
3480 3765 4.012374 CCCACAGATCAAAGCACTTACAT 58.988 43.478 0.00 0.00 0.00 2.29
3482 3767 5.295292 CCCACAGATCAAAGCACTTACATAG 59.705 44.000 0.00 0.00 0.00 2.23
3483 3768 5.877012 CCACAGATCAAAGCACTTACATAGT 59.123 40.000 0.00 0.00 37.68 2.12
3484 3769 6.036517 CCACAGATCAAAGCACTTACATAGTC 59.963 42.308 0.00 0.00 33.85 2.59
3485 3770 5.807520 ACAGATCAAAGCACTTACATAGTCG 59.192 40.000 0.00 0.00 33.85 4.18
3486 3771 6.036470 CAGATCAAAGCACTTACATAGTCGA 58.964 40.000 0.00 0.00 33.85 4.20
3487 3772 6.531594 CAGATCAAAGCACTTACATAGTCGAA 59.468 38.462 0.00 0.00 33.85 3.71
3488 3773 7.063426 CAGATCAAAGCACTTACATAGTCGAAA 59.937 37.037 0.00 0.00 33.85 3.46
3489 3774 7.602644 AGATCAAAGCACTTACATAGTCGAAAA 59.397 33.333 0.00 0.00 33.85 2.29
3490 3775 7.667043 TCAAAGCACTTACATAGTCGAAAAT 57.333 32.000 0.00 0.00 33.85 1.82
3491 3776 8.766000 TCAAAGCACTTACATAGTCGAAAATA 57.234 30.769 0.00 0.00 33.85 1.40
3492 3777 9.378551 TCAAAGCACTTACATAGTCGAAAATAT 57.621 29.630 0.00 0.00 33.85 1.28
3523 3808 0.030638 CACCTTCCGCCACAAACTTG 59.969 55.000 0.00 0.00 0.00 3.16
3527 3812 1.264288 CTTCCGCCACAAACTTGAGTC 59.736 52.381 0.00 0.00 0.00 3.36
3541 3826 4.624015 ACTTGAGTCCAAAATGCATGTTG 58.376 39.130 20.90 20.90 0.00 3.33
3559 3844 4.175516 TGTTGTTTTGCTTGCAGAAAGAG 58.824 39.130 0.13 0.00 38.24 2.85
3585 3870 5.403246 ACTACACTCTGAATAAAGCGTGAG 58.597 41.667 1.66 0.00 36.58 3.51
3634 3919 2.099263 TCGTGCTACTTGCTCTATGGTC 59.901 50.000 0.00 0.00 43.37 4.02
3682 3971 5.925506 TTGTTATCTCTACGGATGTGGAA 57.074 39.130 0.00 0.00 34.95 3.53
3705 3994 5.801350 AATCCAACATTGAGTATGTCACG 57.199 39.130 0.00 0.00 46.75 4.35
3726 4015 4.383948 ACGTAAGATTTTCTTTCGGTCGTC 59.616 41.667 16.82 0.00 46.73 4.20
3736 4025 0.032952 TTCGGTCGTCTTCCACTTGG 59.967 55.000 0.00 0.00 0.00 3.61
3764 4053 2.158645 CACGTGACACCATCGCAATTTA 59.841 45.455 10.90 0.00 37.73 1.40
3800 4089 4.825422 CTCAAGCAAGTGTATCCTCTTCA 58.175 43.478 0.00 0.00 0.00 3.02
3813 4102 7.791029 TGTATCCTCTTCAAATACACAGCATA 58.209 34.615 0.00 0.00 32.44 3.14
3814 4103 8.264347 TGTATCCTCTTCAAATACACAGCATAA 58.736 33.333 0.00 0.00 32.44 1.90
3820 4109 7.988737 TCTTCAAATACACAGCATAATTCCTG 58.011 34.615 0.00 0.00 35.26 3.86
3829 4118 3.752222 CAGCATAATTCCTGATGAGCCTC 59.248 47.826 1.07 0.00 31.81 4.70
3831 4120 3.501445 GCATAATTCCTGATGAGCCTCAC 59.499 47.826 0.00 0.00 0.00 3.51
3841 4130 4.122046 TGATGAGCCTCACGTAATTCATG 58.878 43.478 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.775384 TCTTCAGGCCATTACCCGTATT 59.225 45.455 5.01 0.00 0.00 1.89
1 2 2.368875 CTCTTCAGGCCATTACCCGTAT 59.631 50.000 5.01 0.00 0.00 3.06
2 3 1.760613 CTCTTCAGGCCATTACCCGTA 59.239 52.381 5.01 0.00 0.00 4.02
3 4 0.541863 CTCTTCAGGCCATTACCCGT 59.458 55.000 5.01 0.00 0.00 5.28
4 5 0.830648 TCTCTTCAGGCCATTACCCG 59.169 55.000 5.01 0.00 0.00 5.28
5 6 1.141858 CCTCTCTTCAGGCCATTACCC 59.858 57.143 5.01 0.00 0.00 3.69
6 7 2.629336 CCTCTCTTCAGGCCATTACC 57.371 55.000 5.01 0.00 0.00 2.85
14 15 1.905215 TCTCTTTGGCCTCTCTTCAGG 59.095 52.381 3.32 0.00 36.50 3.86
15 16 3.333804 GTTCTCTTTGGCCTCTCTTCAG 58.666 50.000 3.32 0.00 0.00 3.02
16 17 2.039084 GGTTCTCTTTGGCCTCTCTTCA 59.961 50.000 3.32 0.00 0.00 3.02
17 18 2.705730 GGTTCTCTTTGGCCTCTCTTC 58.294 52.381 3.32 0.00 0.00 2.87
18 19 1.002544 CGGTTCTCTTTGGCCTCTCTT 59.997 52.381 3.32 0.00 0.00 2.85
19 20 0.610687 CGGTTCTCTTTGGCCTCTCT 59.389 55.000 3.32 0.00 0.00 3.10
20 21 0.608640 TCGGTTCTCTTTGGCCTCTC 59.391 55.000 3.32 0.00 0.00 3.20
21 22 1.002544 CTTCGGTTCTCTTTGGCCTCT 59.997 52.381 3.32 0.00 0.00 3.69
22 23 1.270893 ACTTCGGTTCTCTTTGGCCTC 60.271 52.381 3.32 0.00 0.00 4.70
23 24 0.765510 ACTTCGGTTCTCTTTGGCCT 59.234 50.000 3.32 0.00 0.00 5.19
24 25 1.605753 AACTTCGGTTCTCTTTGGCC 58.394 50.000 0.00 0.00 31.78 5.36
34 35 0.322187 CCGGATTGGGAACTTCGGTT 60.322 55.000 0.00 0.00 41.38 4.44
35 36 1.298667 CCGGATTGGGAACTTCGGT 59.701 57.895 0.00 0.00 0.00 4.69
36 37 4.218722 CCGGATTGGGAACTTCGG 57.781 61.111 0.00 0.00 0.00 4.30
45 46 0.037590 TGTTTGTCTCCCCGGATTGG 59.962 55.000 0.73 0.00 37.55 3.16
46 47 1.165270 GTGTTTGTCTCCCCGGATTG 58.835 55.000 0.73 0.00 0.00 2.67
47 48 0.037734 GGTGTTTGTCTCCCCGGATT 59.962 55.000 0.73 0.00 0.00 3.01
48 49 1.683441 GGTGTTTGTCTCCCCGGAT 59.317 57.895 0.73 0.00 0.00 4.18
49 50 2.522367 GGGTGTTTGTCTCCCCGGA 61.522 63.158 0.73 0.00 42.33 5.14
50 51 2.033602 GGGTGTTTGTCTCCCCGG 59.966 66.667 0.00 0.00 42.33 5.73
52 53 0.392595 GATCGGGTGTTTGTCTCCCC 60.393 60.000 0.00 0.00 44.52 4.81
53 54 0.323629 TGATCGGGTGTTTGTCTCCC 59.676 55.000 0.00 0.00 44.07 4.30
54 55 2.076863 CTTGATCGGGTGTTTGTCTCC 58.923 52.381 0.00 0.00 0.00 3.71
55 56 1.464997 GCTTGATCGGGTGTTTGTCTC 59.535 52.381 0.00 0.00 0.00 3.36
56 57 1.202758 TGCTTGATCGGGTGTTTGTCT 60.203 47.619 0.00 0.00 0.00 3.41
57 58 1.069227 GTGCTTGATCGGGTGTTTGTC 60.069 52.381 0.00 0.00 0.00 3.18
58 59 0.951558 GTGCTTGATCGGGTGTTTGT 59.048 50.000 0.00 0.00 0.00 2.83
59 60 0.110238 CGTGCTTGATCGGGTGTTTG 60.110 55.000 0.00 0.00 0.00 2.93
60 61 1.852067 GCGTGCTTGATCGGGTGTTT 61.852 55.000 0.00 0.00 0.00 2.83
61 62 2.325082 GCGTGCTTGATCGGGTGTT 61.325 57.895 0.00 0.00 0.00 3.32
62 63 1.884075 TAGCGTGCTTGATCGGGTGT 61.884 55.000 0.00 0.00 0.00 4.16
63 64 0.739462 TTAGCGTGCTTGATCGGGTG 60.739 55.000 0.00 0.00 0.00 4.61
64 65 0.460284 CTTAGCGTGCTTGATCGGGT 60.460 55.000 0.00 0.00 0.00 5.28
65 66 1.154205 CCTTAGCGTGCTTGATCGGG 61.154 60.000 0.00 0.00 0.00 5.14
66 67 1.154205 CCCTTAGCGTGCTTGATCGG 61.154 60.000 0.00 0.00 0.00 4.18
67 68 0.460284 ACCCTTAGCGTGCTTGATCG 60.460 55.000 0.00 0.00 0.00 3.69
68 69 1.291132 GACCCTTAGCGTGCTTGATC 58.709 55.000 0.00 0.00 0.00 2.92
69 70 0.460284 CGACCCTTAGCGTGCTTGAT 60.460 55.000 0.00 0.00 0.00 2.57
70 71 1.080093 CGACCCTTAGCGTGCTTGA 60.080 57.895 0.00 0.00 0.00 3.02
71 72 2.100631 CCGACCCTTAGCGTGCTTG 61.101 63.158 0.00 0.00 0.00 4.01
72 73 2.264794 CCGACCCTTAGCGTGCTT 59.735 61.111 0.00 0.00 0.00 3.91
73 74 3.771160 CCCGACCCTTAGCGTGCT 61.771 66.667 0.00 0.00 0.00 4.40
74 75 4.832608 CCCCGACCCTTAGCGTGC 62.833 72.222 0.00 0.00 0.00 5.34
75 76 3.072468 TCCCCGACCCTTAGCGTG 61.072 66.667 0.00 0.00 0.00 5.34
76 77 2.758737 CTCCCCGACCCTTAGCGT 60.759 66.667 0.00 0.00 0.00 5.07
77 78 2.441532 TCTCCCCGACCCTTAGCG 60.442 66.667 0.00 0.00 0.00 4.26
78 79 3.218227 GTCTCCCCGACCCTTAGC 58.782 66.667 0.00 0.00 36.62 3.09
85 86 1.321074 AATCGACAGGTCTCCCCGAC 61.321 60.000 0.00 0.00 42.07 4.79
86 87 0.256752 TAATCGACAGGTCTCCCCGA 59.743 55.000 0.00 0.00 38.74 5.14
87 88 0.669077 CTAATCGACAGGTCTCCCCG 59.331 60.000 0.00 0.00 38.74 5.73
88 89 1.682323 GACTAATCGACAGGTCTCCCC 59.318 57.143 0.00 0.00 0.00 4.81
89 90 1.682323 GGACTAATCGACAGGTCTCCC 59.318 57.143 11.44 0.00 0.00 4.30
90 91 2.359531 CTGGACTAATCGACAGGTCTCC 59.640 54.545 11.44 5.63 0.00 3.71
91 92 2.359531 CCTGGACTAATCGACAGGTCTC 59.640 54.545 8.88 3.44 44.21 3.36
92 93 2.379972 CCTGGACTAATCGACAGGTCT 58.620 52.381 8.88 0.00 44.21 3.85
93 94 2.873133 CCTGGACTAATCGACAGGTC 57.127 55.000 8.88 7.03 44.21 3.85
96 97 4.561606 CGTTTTACCTGGACTAATCGACAG 59.438 45.833 0.00 0.00 0.00 3.51
97 98 4.218200 TCGTTTTACCTGGACTAATCGACA 59.782 41.667 0.00 0.00 0.00 4.35
98 99 4.737054 TCGTTTTACCTGGACTAATCGAC 58.263 43.478 0.00 0.00 0.00 4.20
99 100 4.676196 GCTCGTTTTACCTGGACTAATCGA 60.676 45.833 0.00 6.89 0.00 3.59
100 101 3.550678 GCTCGTTTTACCTGGACTAATCG 59.449 47.826 0.00 2.94 0.00 3.34
101 102 3.869832 GGCTCGTTTTACCTGGACTAATC 59.130 47.826 0.00 0.00 0.00 1.75
102 103 3.370209 GGGCTCGTTTTACCTGGACTAAT 60.370 47.826 0.00 0.00 0.00 1.73
103 104 2.027837 GGGCTCGTTTTACCTGGACTAA 60.028 50.000 0.00 0.00 0.00 2.24
104 105 1.551883 GGGCTCGTTTTACCTGGACTA 59.448 52.381 0.00 0.00 0.00 2.59
105 106 0.323957 GGGCTCGTTTTACCTGGACT 59.676 55.000 0.00 0.00 0.00 3.85
106 107 0.675837 GGGGCTCGTTTTACCTGGAC 60.676 60.000 0.00 0.00 0.00 4.02
107 108 1.681076 GGGGCTCGTTTTACCTGGA 59.319 57.895 0.00 0.00 0.00 3.86
108 109 1.743995 CGGGGCTCGTTTTACCTGG 60.744 63.158 0.00 0.00 0.00 4.45
109 110 1.017701 GTCGGGGCTCGTTTTACCTG 61.018 60.000 6.68 0.00 40.32 4.00
110 111 1.294459 GTCGGGGCTCGTTTTACCT 59.706 57.895 6.68 0.00 40.32 3.08
111 112 1.742880 GGTCGGGGCTCGTTTTACC 60.743 63.158 6.68 2.47 40.32 2.85
112 113 1.742880 GGGTCGGGGCTCGTTTTAC 60.743 63.158 6.68 0.00 40.32 2.01
113 114 1.914764 AGGGTCGGGGCTCGTTTTA 60.915 57.895 6.68 0.00 40.32 1.52
114 115 3.246880 AGGGTCGGGGCTCGTTTT 61.247 61.111 6.68 0.00 40.32 2.43
115 116 4.016706 CAGGGTCGGGGCTCGTTT 62.017 66.667 6.68 0.00 40.32 3.60
119 120 2.043248 TAGACAGGGTCGGGGCTC 60.043 66.667 0.00 0.00 37.67 4.70
120 121 2.042843 CTAGACAGGGTCGGGGCT 60.043 66.667 0.00 0.00 37.67 5.19
121 122 3.851128 GCTAGACAGGGTCGGGGC 61.851 72.222 0.00 0.00 37.67 5.80
122 123 2.042843 AGCTAGACAGGGTCGGGG 60.043 66.667 0.00 0.00 37.67 5.73
123 124 1.379977 TGAGCTAGACAGGGTCGGG 60.380 63.158 0.00 0.00 37.67 5.14
124 125 1.810532 GTGAGCTAGACAGGGTCGG 59.189 63.158 0.00 0.00 37.67 4.79
125 126 1.025113 TCGTGAGCTAGACAGGGTCG 61.025 60.000 0.00 0.00 37.67 4.79
126 127 1.133407 CTTCGTGAGCTAGACAGGGTC 59.867 57.143 0.00 0.00 0.00 4.46
127 128 1.178276 CTTCGTGAGCTAGACAGGGT 58.822 55.000 0.00 0.00 0.00 4.34
128 129 1.133407 GTCTTCGTGAGCTAGACAGGG 59.867 57.143 8.42 0.00 40.17 4.45
129 130 1.133407 GGTCTTCGTGAGCTAGACAGG 59.867 57.143 14.05 2.16 41.34 4.00
130 131 1.133407 GGGTCTTCGTGAGCTAGACAG 59.867 57.143 14.05 3.69 41.34 3.51
131 132 1.174783 GGGTCTTCGTGAGCTAGACA 58.825 55.000 14.05 0.00 41.34 3.41
132 133 1.174783 TGGGTCTTCGTGAGCTAGAC 58.825 55.000 5.20 5.20 42.40 2.59
133 134 3.664240 TGGGTCTTCGTGAGCTAGA 57.336 52.632 0.00 0.00 42.40 2.43
135 136 2.025155 GATCTGGGTCTTCGTGAGCTA 58.975 52.381 9.36 4.09 42.40 3.32
136 137 0.820871 GATCTGGGTCTTCGTGAGCT 59.179 55.000 0.00 0.00 42.40 4.09
137 138 0.179097 GGATCTGGGTCTTCGTGAGC 60.179 60.000 0.00 2.71 42.07 4.26
138 139 0.101399 CGGATCTGGGTCTTCGTGAG 59.899 60.000 0.00 0.00 0.00 3.51
139 140 1.945354 GCGGATCTGGGTCTTCGTGA 61.945 60.000 3.14 0.00 0.00 4.35
140 141 1.519455 GCGGATCTGGGTCTTCGTG 60.519 63.158 3.14 0.00 0.00 4.35
141 142 2.893398 GCGGATCTGGGTCTTCGT 59.107 61.111 3.14 0.00 0.00 3.85
142 143 2.278857 CGCGGATCTGGGTCTTCG 60.279 66.667 10.39 0.00 0.00 3.79
143 144 1.227002 GTCGCGGATCTGGGTCTTC 60.227 63.158 17.36 4.76 0.00 2.87
144 145 2.722201 GGTCGCGGATCTGGGTCTT 61.722 63.158 17.36 0.00 0.00 3.01
145 146 3.148279 GGTCGCGGATCTGGGTCT 61.148 66.667 17.36 0.00 0.00 3.85
146 147 4.222847 GGGTCGCGGATCTGGGTC 62.223 72.222 17.36 12.20 0.00 4.46
148 149 4.227134 CTGGGTCGCGGATCTGGG 62.227 72.222 12.29 12.29 0.00 4.45
149 150 3.432051 GACTGGGTCGCGGATCTGG 62.432 68.421 6.13 0.00 0.00 3.86
150 151 2.021068 ATGACTGGGTCGCGGATCTG 62.021 60.000 6.13 0.00 34.95 2.90
151 152 1.330655 AATGACTGGGTCGCGGATCT 61.331 55.000 6.13 0.00 34.95 2.75
152 153 1.144057 AATGACTGGGTCGCGGATC 59.856 57.895 6.13 0.00 34.95 3.36
153 154 1.153369 CAATGACTGGGTCGCGGAT 60.153 57.895 6.13 0.00 34.95 4.18
154 155 1.822114 TTCAATGACTGGGTCGCGGA 61.822 55.000 6.13 0.00 34.95 5.54
155 156 0.953471 TTTCAATGACTGGGTCGCGG 60.953 55.000 6.13 0.00 34.95 6.46
156 157 0.165944 GTTTCAATGACTGGGTCGCG 59.834 55.000 0.00 0.00 34.95 5.87
157 158 0.165944 CGTTTCAATGACTGGGTCGC 59.834 55.000 0.00 0.00 34.95 5.19
158 159 1.459592 GTCGTTTCAATGACTGGGTCG 59.540 52.381 4.87 0.00 40.83 4.79
159 160 1.459592 CGTCGTTTCAATGACTGGGTC 59.540 52.381 9.65 0.00 41.63 4.46
160 161 1.508632 CGTCGTTTCAATGACTGGGT 58.491 50.000 9.65 0.00 41.63 4.51
161 162 0.165944 GCGTCGTTTCAATGACTGGG 59.834 55.000 9.65 0.00 41.63 4.45
162 163 0.865111 TGCGTCGTTTCAATGACTGG 59.135 50.000 9.65 0.00 41.63 4.00
163 164 2.474526 GGATGCGTCGTTTCAATGACTG 60.475 50.000 9.65 5.30 41.63 3.51
164 165 1.732259 GGATGCGTCGTTTCAATGACT 59.268 47.619 9.65 0.00 41.63 3.41
165 166 1.202031 GGGATGCGTCGTTTCAATGAC 60.202 52.381 0.00 2.26 40.66 3.06
166 167 1.083489 GGGATGCGTCGTTTCAATGA 58.917 50.000 0.00 0.00 0.00 2.57
167 168 0.247655 CGGGATGCGTCGTTTCAATG 60.248 55.000 0.00 0.00 0.00 2.82
168 169 1.366111 CCGGGATGCGTCGTTTCAAT 61.366 55.000 0.00 0.00 0.00 2.57
169 170 2.030401 CCGGGATGCGTCGTTTCAA 61.030 57.895 0.00 0.00 0.00 2.69
170 171 2.433491 CCGGGATGCGTCGTTTCA 60.433 61.111 0.00 0.00 0.00 2.69
171 172 3.861263 GCCGGGATGCGTCGTTTC 61.861 66.667 2.18 0.00 0.00 2.78
176 177 2.828549 ATTTGGCCGGGATGCGTC 60.829 61.111 2.18 0.00 0.00 5.19
177 178 2.828549 GATTTGGCCGGGATGCGT 60.829 61.111 2.18 0.00 0.00 5.24
178 179 3.595758 GGATTTGGCCGGGATGCG 61.596 66.667 2.18 0.00 0.00 4.73
179 180 2.441901 TGGATTTGGCCGGGATGC 60.442 61.111 2.18 0.00 0.00 3.91
180 181 2.127232 GGTGGATTTGGCCGGGATG 61.127 63.158 2.18 0.00 0.00 3.51
181 182 2.278738 GGTGGATTTGGCCGGGAT 59.721 61.111 2.18 0.00 0.00 3.85
182 183 4.055227 GGGTGGATTTGGCCGGGA 62.055 66.667 2.18 0.00 0.00 5.14
184 185 4.418328 TCGGGTGGATTTGGCCGG 62.418 66.667 0.00 0.00 0.00 6.13
185 186 2.824041 CTCGGGTGGATTTGGCCG 60.824 66.667 0.00 0.00 0.00 6.13
186 187 1.452108 CTCTCGGGTGGATTTGGCC 60.452 63.158 0.00 0.00 0.00 5.36
187 188 0.322546 AACTCTCGGGTGGATTTGGC 60.323 55.000 0.00 0.00 0.00 4.52
188 189 3.560636 ATAACTCTCGGGTGGATTTGG 57.439 47.619 0.00 0.00 0.00 3.28
189 190 4.770795 AGAATAACTCTCGGGTGGATTTG 58.229 43.478 0.00 0.00 0.00 2.32
190 191 5.437191 AAGAATAACTCTCGGGTGGATTT 57.563 39.130 0.00 0.00 31.02 2.17
191 192 5.437191 AAAGAATAACTCTCGGGTGGATT 57.563 39.130 0.00 0.00 31.02 3.01
192 193 5.429130 GAAAAGAATAACTCTCGGGTGGAT 58.571 41.667 0.00 0.00 31.02 3.41
193 194 4.323257 GGAAAAGAATAACTCTCGGGTGGA 60.323 45.833 0.00 0.00 31.02 4.02
194 195 3.939592 GGAAAAGAATAACTCTCGGGTGG 59.060 47.826 0.00 0.00 31.02 4.61
195 196 4.833390 AGGAAAAGAATAACTCTCGGGTG 58.167 43.478 0.00 0.00 31.02 4.61
196 197 4.530946 TGAGGAAAAGAATAACTCTCGGGT 59.469 41.667 0.00 0.00 31.02 5.28
197 198 5.086104 TGAGGAAAAGAATAACTCTCGGG 57.914 43.478 0.00 0.00 31.02 5.14
198 199 4.568760 GCTGAGGAAAAGAATAACTCTCGG 59.431 45.833 0.00 0.00 31.02 4.63
199 200 4.266502 CGCTGAGGAAAAGAATAACTCTCG 59.733 45.833 0.00 0.00 31.02 4.04
200 201 4.568760 CCGCTGAGGAAAAGAATAACTCTC 59.431 45.833 0.00 0.00 45.00 3.20
201 202 4.508662 CCGCTGAGGAAAAGAATAACTCT 58.491 43.478 0.00 0.00 45.00 3.24
202 203 4.866682 CCGCTGAGGAAAAGAATAACTC 57.133 45.455 0.00 0.00 45.00 3.01
215 216 1.103987 TCTCCTTCGATCCGCTGAGG 61.104 60.000 0.00 0.00 42.97 3.86
216 217 0.958091 ATCTCCTTCGATCCGCTGAG 59.042 55.000 0.00 0.00 0.00 3.35
217 218 1.067669 CAATCTCCTTCGATCCGCTGA 59.932 52.381 0.00 0.00 0.00 4.26
218 219 1.067669 TCAATCTCCTTCGATCCGCTG 59.932 52.381 0.00 0.00 0.00 5.18
219 220 1.403814 TCAATCTCCTTCGATCCGCT 58.596 50.000 0.00 0.00 0.00 5.52
220 221 2.131183 CTTCAATCTCCTTCGATCCGC 58.869 52.381 0.00 0.00 0.00 5.54
221 222 3.376540 GACTTCAATCTCCTTCGATCCG 58.623 50.000 0.00 0.00 0.00 4.18
222 223 3.376540 CGACTTCAATCTCCTTCGATCC 58.623 50.000 0.00 0.00 0.00 3.36
223 224 2.792116 GCGACTTCAATCTCCTTCGATC 59.208 50.000 0.00 0.00 0.00 3.69
224 225 2.482142 GGCGACTTCAATCTCCTTCGAT 60.482 50.000 0.00 0.00 0.00 3.59
225 226 1.135083 GGCGACTTCAATCTCCTTCGA 60.135 52.381 0.00 0.00 0.00 3.71
226 227 1.134965 AGGCGACTTCAATCTCCTTCG 60.135 52.381 0.00 0.00 37.44 3.79
227 228 2.545731 GAGGCGACTTCAATCTCCTTC 58.454 52.381 0.00 0.00 44.43 3.46
228 229 1.208293 GGAGGCGACTTCAATCTCCTT 59.792 52.381 0.00 0.00 44.43 3.36
229 230 0.827368 GGAGGCGACTTCAATCTCCT 59.173 55.000 0.00 0.00 44.43 3.69
230 231 0.537188 TGGAGGCGACTTCAATCTCC 59.463 55.000 0.00 0.00 45.24 3.71
237 238 2.027625 CGTGGTTGGAGGCGACTTC 61.028 63.158 0.00 0.00 44.43 3.01
238 239 2.030562 CGTGGTTGGAGGCGACTT 59.969 61.111 0.00 0.00 44.43 3.01
239 240 3.222354 GTCGTGGTTGGAGGCGACT 62.222 63.158 0.00 0.00 46.74 4.18
240 241 2.737376 GTCGTGGTTGGAGGCGAC 60.737 66.667 0.00 0.00 44.93 5.19
241 242 3.998672 GGTCGTGGTTGGAGGCGA 61.999 66.667 0.00 0.00 0.00 5.54
244 245 4.388499 CCCGGTCGTGGTTGGAGG 62.388 72.222 0.00 0.00 0.00 4.30
245 246 3.296709 CTCCCGGTCGTGGTTGGAG 62.297 68.421 0.00 0.00 36.92 3.86
246 247 3.307906 CTCCCGGTCGTGGTTGGA 61.308 66.667 0.00 0.00 0.00 3.53
247 248 4.388499 CCTCCCGGTCGTGGTTGG 62.388 72.222 0.00 0.00 0.00 3.77
248 249 4.388499 CCCTCCCGGTCGTGGTTG 62.388 72.222 0.00 0.00 0.00 3.77
249 250 4.948080 ACCCTCCCGGTCGTGGTT 62.948 66.667 0.00 0.00 43.58 3.67
260 261 4.816984 TCTCCTCCGCGACCCTCC 62.817 72.222 8.23 0.00 0.00 4.30
261 262 2.519780 ATCTCCTCCGCGACCCTC 60.520 66.667 8.23 0.00 0.00 4.30
262 263 2.519780 GATCTCCTCCGCGACCCT 60.520 66.667 8.23 0.00 0.00 4.34
263 264 2.128507 AAGATCTCCTCCGCGACCC 61.129 63.158 8.23 0.00 0.00 4.46
264 265 1.066587 CAAGATCTCCTCCGCGACC 59.933 63.158 8.23 0.00 0.00 4.79
265 266 1.066587 CCAAGATCTCCTCCGCGAC 59.933 63.158 8.23 0.00 0.00 5.19
266 267 2.786495 GCCAAGATCTCCTCCGCGA 61.786 63.158 8.23 0.00 0.00 5.87
267 268 2.279784 GCCAAGATCTCCTCCGCG 60.280 66.667 0.00 0.00 0.00 6.46
268 269 0.883814 CATGCCAAGATCTCCTCCGC 60.884 60.000 0.00 0.00 0.00 5.54
269 270 0.755079 TCATGCCAAGATCTCCTCCG 59.245 55.000 0.00 0.00 0.00 4.63
270 271 2.848691 CTTCATGCCAAGATCTCCTCC 58.151 52.381 0.00 0.00 0.00 4.30
271 272 2.158784 AGCTTCATGCCAAGATCTCCTC 60.159 50.000 0.00 0.00 44.23 3.71
272 273 1.845143 AGCTTCATGCCAAGATCTCCT 59.155 47.619 0.00 0.00 44.23 3.69
273 274 2.158784 AGAGCTTCATGCCAAGATCTCC 60.159 50.000 8.65 0.00 44.11 3.71
274 275 2.873472 CAGAGCTTCATGCCAAGATCTC 59.127 50.000 10.95 3.74 44.11 2.75
276 277 1.334243 GCAGAGCTTCATGCCAAGATC 59.666 52.381 7.98 4.65 44.23 2.75
277 278 1.390565 GCAGAGCTTCATGCCAAGAT 58.609 50.000 7.98 0.00 44.23 2.40
278 279 2.864114 GCAGAGCTTCATGCCAAGA 58.136 52.632 7.98 0.00 44.23 3.02
283 284 1.132643 CTTCTTGGCAGAGCTTCATGC 59.867 52.381 10.17 10.17 41.80 4.06
284 285 1.743958 CCTTCTTGGCAGAGCTTCATG 59.256 52.381 0.00 0.00 0.00 3.07
285 286 2.125773 CCTTCTTGGCAGAGCTTCAT 57.874 50.000 0.00 0.00 0.00 2.57
286 287 3.639099 CCTTCTTGGCAGAGCTTCA 57.361 52.632 0.00 0.00 0.00 3.02
296 297 2.897350 GATCCGCCGCCTTCTTGG 60.897 66.667 0.00 0.00 39.35 3.61
297 298 3.264897 CGATCCGCCGCCTTCTTG 61.265 66.667 0.00 0.00 0.00 3.02
298 299 3.458163 TCGATCCGCCGCCTTCTT 61.458 61.111 0.00 0.00 0.00 2.52
299 300 4.208686 GTCGATCCGCCGCCTTCT 62.209 66.667 0.00 0.00 0.00 2.85
300 301 4.208686 AGTCGATCCGCCGCCTTC 62.209 66.667 0.00 0.00 0.00 3.46
301 302 4.514577 CAGTCGATCCGCCGCCTT 62.515 66.667 0.00 0.00 0.00 4.35
304 305 3.774959 ATCACAGTCGATCCGCCGC 62.775 63.158 0.00 0.00 0.00 6.53
305 306 1.658717 GATCACAGTCGATCCGCCG 60.659 63.158 0.00 0.00 36.57 6.46
306 307 1.658717 CGATCACAGTCGATCCGCC 60.659 63.158 0.00 0.00 44.06 6.13
307 308 1.658717 CCGATCACAGTCGATCCGC 60.659 63.158 0.00 0.00 44.06 5.54
308 309 1.658717 GCCGATCACAGTCGATCCG 60.659 63.158 0.00 0.00 44.06 4.18
309 310 1.300233 GGCCGATCACAGTCGATCC 60.300 63.158 0.00 0.00 44.06 3.36
310 311 1.658717 CGGCCGATCACAGTCGATC 60.659 63.158 24.07 0.00 44.06 3.69
311 312 2.413351 CGGCCGATCACAGTCGAT 59.587 61.111 24.07 0.00 44.06 3.59
312 313 3.822192 CCGGCCGATCACAGTCGA 61.822 66.667 30.73 0.00 44.06 4.20
313 314 3.822192 TCCGGCCGATCACAGTCG 61.822 66.667 30.73 6.27 41.13 4.18
314 315 2.202756 GTCCGGCCGATCACAGTC 60.203 66.667 30.73 2.00 0.00 3.51
315 316 3.771160 GGTCCGGCCGATCACAGT 61.771 66.667 30.73 0.00 0.00 3.55
316 317 1.744320 TATGGTCCGGCCGATCACAG 61.744 60.000 30.73 8.93 41.21 3.66
317 318 1.744320 CTATGGTCCGGCCGATCACA 61.744 60.000 30.73 19.92 41.21 3.58
318 319 1.006102 CTATGGTCCGGCCGATCAC 60.006 63.158 30.73 19.60 41.21 3.06
319 320 1.152631 TCTATGGTCCGGCCGATCA 60.153 57.895 30.73 21.32 41.21 2.92
320 321 1.289380 GTCTATGGTCCGGCCGATC 59.711 63.158 30.73 18.73 41.21 3.69
321 322 2.207924 GGTCTATGGTCCGGCCGAT 61.208 63.158 30.73 15.14 41.21 4.18
322 323 2.836360 GGTCTATGGTCCGGCCGA 60.836 66.667 30.73 10.38 41.21 5.54
323 324 3.151710 TGGTCTATGGTCCGGCCG 61.152 66.667 21.04 21.04 41.21 6.13
324 325 0.757935 TAGTGGTCTATGGTCCGGCC 60.758 60.000 0.00 1.41 37.90 6.13
325 326 1.000955 CATAGTGGTCTATGGTCCGGC 59.999 57.143 0.00 0.00 45.65 6.13
330 331 4.140686 TGGGAGATCATAGTGGTCTATGGT 60.141 45.833 13.08 7.78 46.80 3.55
333 334 6.789457 TCAAATGGGAGATCATAGTGGTCTAT 59.211 38.462 0.00 0.00 38.10 1.98
334 335 6.143206 TCAAATGGGAGATCATAGTGGTCTA 58.857 40.000 0.00 0.00 38.10 2.59
335 336 4.971282 TCAAATGGGAGATCATAGTGGTCT 59.029 41.667 0.00 0.00 41.29 3.85
336 337 5.296151 TCAAATGGGAGATCATAGTGGTC 57.704 43.478 0.00 0.00 0.00 4.02
337 338 5.192522 ACTTCAAATGGGAGATCATAGTGGT 59.807 40.000 0.00 0.00 0.00 4.16
338 339 5.688807 ACTTCAAATGGGAGATCATAGTGG 58.311 41.667 0.00 0.00 0.00 4.00
339 340 6.825213 TGAACTTCAAATGGGAGATCATAGTG 59.175 38.462 0.00 0.00 0.00 2.74
340 341 6.825721 GTGAACTTCAAATGGGAGATCATAGT 59.174 38.462 0.00 0.00 0.00 2.12
341 342 6.018425 CGTGAACTTCAAATGGGAGATCATAG 60.018 42.308 0.00 0.00 0.00 2.23
342 343 5.817296 CGTGAACTTCAAATGGGAGATCATA 59.183 40.000 0.00 0.00 0.00 2.15
343 344 4.637534 CGTGAACTTCAAATGGGAGATCAT 59.362 41.667 0.00 0.00 0.00 2.45
344 345 4.002982 CGTGAACTTCAAATGGGAGATCA 58.997 43.478 0.00 0.00 0.00 2.92
345 346 4.003648 ACGTGAACTTCAAATGGGAGATC 58.996 43.478 0.00 0.00 0.00 2.75
346 347 4.003648 GACGTGAACTTCAAATGGGAGAT 58.996 43.478 0.00 0.00 0.00 2.75
347 348 3.071023 AGACGTGAACTTCAAATGGGAGA 59.929 43.478 0.00 0.00 0.00 3.71
348 349 3.403038 AGACGTGAACTTCAAATGGGAG 58.597 45.455 0.00 0.00 0.00 4.30
349 350 3.485463 AGACGTGAACTTCAAATGGGA 57.515 42.857 0.00 0.00 0.00 4.37
350 351 4.315803 AGTAGACGTGAACTTCAAATGGG 58.684 43.478 0.00 0.00 0.00 4.00
351 352 4.389077 GGAGTAGACGTGAACTTCAAATGG 59.611 45.833 0.00 0.00 0.00 3.16
352 353 4.389077 GGGAGTAGACGTGAACTTCAAATG 59.611 45.833 0.00 0.00 0.00 2.32
353 354 4.283722 AGGGAGTAGACGTGAACTTCAAAT 59.716 41.667 0.00 0.00 0.00 2.32
354 355 3.640029 AGGGAGTAGACGTGAACTTCAAA 59.360 43.478 0.00 0.00 0.00 2.69
355 356 3.228453 AGGGAGTAGACGTGAACTTCAA 58.772 45.455 0.00 0.00 0.00 2.69
356 357 2.818432 GAGGGAGTAGACGTGAACTTCA 59.182 50.000 0.00 0.00 0.00 3.02
357 358 2.164017 GGAGGGAGTAGACGTGAACTTC 59.836 54.545 0.00 0.00 0.00 3.01
358 359 2.169330 GGAGGGAGTAGACGTGAACTT 58.831 52.381 0.00 0.00 0.00 2.66
359 360 1.836802 GGAGGGAGTAGACGTGAACT 58.163 55.000 0.00 0.00 0.00 3.01
360 361 0.450983 CGGAGGGAGTAGACGTGAAC 59.549 60.000 0.00 0.00 0.00 3.18
361 362 0.037303 ACGGAGGGAGTAGACGTGAA 59.963 55.000 0.00 0.00 36.32 3.18
362 363 0.392193 GACGGAGGGAGTAGACGTGA 60.392 60.000 0.00 0.00 37.96 4.35
363 364 0.392729 AGACGGAGGGAGTAGACGTG 60.393 60.000 0.00 0.00 37.96 4.49
364 365 0.107752 GAGACGGAGGGAGTAGACGT 60.108 60.000 0.00 0.00 40.85 4.34
365 366 0.107800 TGAGACGGAGGGAGTAGACG 60.108 60.000 0.00 0.00 0.00 4.18
366 367 2.125773 TTGAGACGGAGGGAGTAGAC 57.874 55.000 0.00 0.00 0.00 2.59
367 368 2.893215 TTTGAGACGGAGGGAGTAGA 57.107 50.000 0.00 0.00 0.00 2.59
404 405 6.884096 CATCGAATGCTTCCATATCTAGAC 57.116 41.667 0.00 0.00 0.00 2.59
433 434 3.062234 GCATTTAACACTAGAGCACGACC 59.938 47.826 0.00 0.00 0.00 4.79
438 439 4.842574 TGGATGCATTTAACACTAGAGCA 58.157 39.130 0.00 0.00 34.78 4.26
485 501 4.079980 TCGTCCCAAAATCTTTGTCTCA 57.920 40.909 0.00 0.00 0.00 3.27
486 502 4.083271 CCTTCGTCCCAAAATCTTTGTCTC 60.083 45.833 0.00 0.00 0.00 3.36
493 509 9.862149 AATAATATTACCTTCGTCCCAAAATCT 57.138 29.630 0.00 0.00 0.00 2.40
503 519 4.240096 CGCCCGAATAATATTACCTTCGT 58.760 43.478 21.18 0.00 38.96 3.85
510 526 3.581024 AGCGACGCCCGAATAATATTA 57.419 42.857 17.79 0.00 41.76 0.98
564 580 4.220821 GTGTCTTGTCAGATGGGTCTTCTA 59.779 45.833 0.00 0.00 30.42 2.10
596 612 1.135373 TGGAGAGCTCGATCAAACGAC 60.135 52.381 8.37 0.00 37.37 4.34
642 658 2.542595 ACGTGGACGAAATTCTTGTGTC 59.457 45.455 6.12 0.00 43.02 3.67
669 685 0.396435 AGAAGGTTCCACGCATCACA 59.604 50.000 0.00 0.00 0.00 3.58
782 827 1.170919 ATGGATCGACCGACCTACCG 61.171 60.000 0.00 0.00 42.61 4.02
826 877 0.782384 AGCTTTATATACACGCGCGC 59.218 50.000 32.58 23.91 0.00 6.86
827 878 3.231965 ACTAGCTTTATATACACGCGCG 58.768 45.455 30.96 30.96 0.00 6.86
828 879 4.224433 TGACTAGCTTTATATACACGCGC 58.776 43.478 5.73 0.00 0.00 6.86
840 891 0.613260 TCGTGGGCATGACTAGCTTT 59.387 50.000 0.00 0.00 0.00 3.51
846 897 2.315781 ATCGCATCGTGGGCATGACT 62.316 55.000 0.00 0.00 0.00 3.41
848 899 1.888638 CATCGCATCGTGGGCATGA 60.889 57.895 0.00 0.00 0.00 3.07
936 990 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
937 991 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
938 992 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
939 993 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
940 994 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
941 995 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
942 996 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
943 997 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
944 998 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
945 999 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
946 1000 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
947 1001 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
948 1002 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
949 1003 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
950 1004 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
951 1005 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
952 1006 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
953 1007 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
954 1008 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
955 1009 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
956 1010 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
957 1011 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
958 1012 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
959 1013 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
960 1014 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
961 1015 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
962 1016 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
963 1017 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
964 1018 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
965 1019 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
966 1020 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
967 1021 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
968 1022 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
969 1023 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
970 1024 3.964031 ACCTCTCTCTCTCTCTCTCTCTC 59.036 52.174 0.00 0.00 0.00 3.20
971 1025 4.000928 ACCTCTCTCTCTCTCTCTCTCT 57.999 50.000 0.00 0.00 0.00 3.10
972 1026 4.080863 ACAACCTCTCTCTCTCTCTCTCTC 60.081 50.000 0.00 0.00 0.00 3.20
973 1027 3.846588 ACAACCTCTCTCTCTCTCTCTCT 59.153 47.826 0.00 0.00 0.00 3.10
974 1028 4.222124 ACAACCTCTCTCTCTCTCTCTC 57.778 50.000 0.00 0.00 0.00 3.20
975 1029 4.335416 CAACAACCTCTCTCTCTCTCTCT 58.665 47.826 0.00 0.00 0.00 3.10
976 1030 3.119495 GCAACAACCTCTCTCTCTCTCTC 60.119 52.174 0.00 0.00 0.00 3.20
977 1031 2.825532 GCAACAACCTCTCTCTCTCTCT 59.174 50.000 0.00 0.00 0.00 3.10
1313 1374 2.033141 ACGGGACCTTCGACTCGA 59.967 61.111 0.00 0.00 0.00 4.04
1320 1381 4.452733 CGCTCCCACGGGACCTTC 62.453 72.222 0.00 0.00 39.76 3.46
1352 1413 2.673368 CCATAGAACGTCTTGAAGTGGC 59.327 50.000 0.00 0.00 0.00 5.01
1376 1437 1.004440 GAGAGCTGCCGTTCAAGGT 60.004 57.895 0.00 0.00 0.00 3.50
1439 1500 1.480137 CCTCTGAGATCTTTGACGCCT 59.520 52.381 6.17 0.00 0.00 5.52
1552 1613 0.648958 GGAATGCTACACGGTTACGC 59.351 55.000 0.00 0.00 46.04 4.42
1585 1699 4.718940 AATGGTTGTAGTATGCAAAGGC 57.281 40.909 0.00 0.00 43.85 4.35
1687 1809 0.035820 AGGCGCTAATTGGAAACCGA 60.036 50.000 7.64 0.00 0.00 4.69
1894 2016 1.691976 ACAGGATGGTTGAACTCACGA 59.308 47.619 0.00 0.00 43.62 4.35
1904 2026 2.742372 GACGCGCACAGGATGGTT 60.742 61.111 5.73 0.00 43.62 3.67
2026 2148 5.462530 TTTTGAGGTCGAGACACAAGATA 57.537 39.130 5.55 0.00 33.47 1.98
2035 2157 3.128242 GTCCGTAGATTTTGAGGTCGAGA 59.872 47.826 0.00 0.00 0.00 4.04
2320 2442 3.072038 CAGAGATCCTTGTCCATGCCATA 59.928 47.826 0.00 0.00 0.00 2.74
2413 2535 1.002502 CCCCCGAAAGAGGTTGACC 60.003 63.158 0.00 0.00 0.00 4.02
2438 2560 2.273449 CCACCATGCCAGGGAGAC 59.727 66.667 0.59 0.00 0.00 3.36
2537 2659 0.754957 CCTGACAACCCAACTGCCAA 60.755 55.000 0.00 0.00 0.00 4.52
2545 2667 1.002624 GGCGATTCCTGACAACCCA 60.003 57.895 0.00 0.00 0.00 4.51
2566 2688 0.318699 ACACACCGATGACTGTGACG 60.319 55.000 4.84 0.00 40.28 4.35
2761 2889 2.066999 GTCAGAGTAGGGGGCCTGG 61.067 68.421 0.84 0.00 34.61 4.45
2766 2894 1.455959 CCGGAGTCAGAGTAGGGGG 60.456 68.421 0.00 0.00 0.00 5.40
2768 2896 1.076632 AGCCGGAGTCAGAGTAGGG 60.077 63.158 5.05 0.00 0.00 3.53
2853 2984 5.284861 TGTTATGCACCATACCGTCTAAT 57.715 39.130 0.00 0.00 0.00 1.73
2863 2994 6.377996 ACACTAATCAACATGTTATGCACCAT 59.622 34.615 11.53 0.00 0.00 3.55
2929 3099 2.090760 TGCAGCAAGTTCACAAAGACA 58.909 42.857 0.00 0.00 0.00 3.41
2966 3136 4.152647 ACCATCAAGTCAGGATATCGCTA 58.847 43.478 0.00 0.00 0.00 4.26
2985 3194 4.278170 CCACTAATTTGACAAGCTCAACCA 59.722 41.667 0.00 0.00 38.70 3.67
3033 3242 8.514594 TCAAAATAGAGCAGGAAATGTAACTTG 58.485 33.333 0.00 0.00 0.00 3.16
3046 3255 7.768120 AGTTACTTGGAGATCAAAATAGAGCAG 59.232 37.037 0.00 0.00 34.56 4.24
3048 3270 7.225734 GGAGTTACTTGGAGATCAAAATAGAGC 59.774 40.741 0.00 0.00 34.56 4.09
3056 3278 6.098409 GGTCTATGGAGTTACTTGGAGATCAA 59.902 42.308 0.00 0.00 0.00 2.57
3198 3421 5.363939 TCAACACATCATAGTCACACACAA 58.636 37.500 0.00 0.00 0.00 3.33
3214 3437 0.973632 AGAGTACCGCCATCAACACA 59.026 50.000 0.00 0.00 0.00 3.72
3215 3438 1.067142 TGAGAGTACCGCCATCAACAC 60.067 52.381 0.00 0.00 0.00 3.32
3248 3504 8.644374 AACTTGGCTTCAACCTATTATGTAAA 57.356 30.769 0.00 0.00 0.00 2.01
3255 3511 5.213891 CCAAAACTTGGCTTCAACCTATT 57.786 39.130 0.00 0.00 45.17 1.73
3283 3539 3.181469 GGATGCCGGAACTAATAGACACA 60.181 47.826 5.05 0.00 0.00 3.72
3373 3658 7.173907 ACATAATTATGTTAGCACATCTGAGGC 59.826 37.037 22.70 0.00 43.99 4.70
3415 3700 6.430000 TCTGTTCCAGGTAGCAATTAGTTTTC 59.570 38.462 0.00 0.00 31.51 2.29
3423 3708 3.055530 CAGTCTCTGTTCCAGGTAGCAAT 60.056 47.826 0.00 0.00 31.51 3.56
3427 3712 3.574396 TGTTCAGTCTCTGTTCCAGGTAG 59.426 47.826 0.00 0.00 32.61 3.18
3429 3714 2.366916 CTGTTCAGTCTCTGTTCCAGGT 59.633 50.000 0.00 0.00 32.61 4.00
3464 3749 6.887376 TTCGACTATGTAAGTGCTTTGATC 57.113 37.500 0.00 0.00 39.07 2.92
3487 3772 8.305317 GCGGAAGGTGTCTATACTTCTATATTT 58.695 37.037 0.00 0.00 40.25 1.40
3488 3773 7.093858 GGCGGAAGGTGTCTATACTTCTATATT 60.094 40.741 0.00 0.00 40.25 1.28
3489 3774 6.377712 GGCGGAAGGTGTCTATACTTCTATAT 59.622 42.308 0.00 0.00 40.25 0.86
3490 3775 5.709164 GGCGGAAGGTGTCTATACTTCTATA 59.291 44.000 0.00 0.00 40.25 1.31
3491 3776 4.523558 GGCGGAAGGTGTCTATACTTCTAT 59.476 45.833 0.00 0.00 40.25 1.98
3492 3777 3.887716 GGCGGAAGGTGTCTATACTTCTA 59.112 47.826 0.00 0.00 40.25 2.10
3493 3778 2.694109 GGCGGAAGGTGTCTATACTTCT 59.306 50.000 0.00 0.00 40.25 2.85
3494 3779 2.429610 TGGCGGAAGGTGTCTATACTTC 59.570 50.000 0.00 0.00 39.80 3.01
3495 3780 2.167900 GTGGCGGAAGGTGTCTATACTT 59.832 50.000 0.00 0.00 0.00 2.24
3496 3781 1.755380 GTGGCGGAAGGTGTCTATACT 59.245 52.381 0.00 0.00 0.00 2.12
3497 3782 1.479323 TGTGGCGGAAGGTGTCTATAC 59.521 52.381 0.00 0.00 0.00 1.47
3498 3783 1.855295 TGTGGCGGAAGGTGTCTATA 58.145 50.000 0.00 0.00 0.00 1.31
3499 3784 0.981183 TTGTGGCGGAAGGTGTCTAT 59.019 50.000 0.00 0.00 0.00 1.98
3500 3785 0.759959 TTTGTGGCGGAAGGTGTCTA 59.240 50.000 0.00 0.00 0.00 2.59
3501 3786 0.818040 GTTTGTGGCGGAAGGTGTCT 60.818 55.000 0.00 0.00 0.00 3.41
3502 3787 0.818040 AGTTTGTGGCGGAAGGTGTC 60.818 55.000 0.00 0.00 0.00 3.67
3503 3788 0.395173 AAGTTTGTGGCGGAAGGTGT 60.395 50.000 0.00 0.00 0.00 4.16
3504 3789 0.030638 CAAGTTTGTGGCGGAAGGTG 59.969 55.000 0.00 0.00 0.00 4.00
3505 3790 0.106918 TCAAGTTTGTGGCGGAAGGT 60.107 50.000 0.00 0.00 0.00 3.50
3506 3791 0.593128 CTCAAGTTTGTGGCGGAAGG 59.407 55.000 0.00 0.00 0.00 3.46
3507 3792 1.264288 GACTCAAGTTTGTGGCGGAAG 59.736 52.381 0.00 0.00 0.00 3.46
3508 3793 1.305201 GACTCAAGTTTGTGGCGGAA 58.695 50.000 0.00 0.00 0.00 4.30
3523 3808 5.740406 CAAAACAACATGCATTTTGGACTC 58.260 37.500 25.16 0.00 38.88 3.36
3527 3812 4.555348 AGCAAAACAACATGCATTTTGG 57.445 36.364 25.16 10.33 44.95 3.28
3541 3826 3.715628 TCCTCTTTCTGCAAGCAAAAC 57.284 42.857 0.00 0.00 31.70 2.43
3559 3844 5.062308 CACGCTTTATTCAGAGTGTAGTTCC 59.938 44.000 0.00 0.00 39.14 3.62
3619 3904 6.374417 AAAAGGAAGACCATAGAGCAAGTA 57.626 37.500 0.00 0.00 38.94 2.24
3634 3919 3.636764 AGCCAGTGGTTACAAAAAGGAAG 59.363 43.478 11.74 0.00 0.00 3.46
3690 3979 8.873830 AGAAAATCTTACGTGACATACTCAATG 58.126 33.333 0.00 0.00 41.74 2.82
3705 3994 6.400834 GGAAGACGACCGAAAGAAAATCTTAC 60.401 42.308 0.00 0.00 35.27 2.34
3726 4015 0.031178 GTGCTTGTGCCAAGTGGAAG 59.969 55.000 14.04 0.00 38.71 3.46
3736 4025 1.785041 ATGGTGTCACGTGCTTGTGC 61.785 55.000 11.67 0.00 39.73 4.57
3764 4053 1.815003 GCTTGAGCAATGCAAGTACCT 59.185 47.619 8.35 0.00 43.50 3.08
3800 4089 7.255381 GCTCATCAGGAATTATGCTGTGTATTT 60.255 37.037 0.00 0.00 44.64 1.40
3809 4098 3.501445 GTGAGGCTCATCAGGAATTATGC 59.499 47.826 21.84 0.00 0.00 3.14
3813 4102 1.556911 ACGTGAGGCTCATCAGGAATT 59.443 47.619 21.84 0.00 38.23 2.17
3814 4103 1.198713 ACGTGAGGCTCATCAGGAAT 58.801 50.000 21.84 0.00 38.23 3.01
3820 4109 4.210120 GTCATGAATTACGTGAGGCTCATC 59.790 45.833 21.84 13.22 43.95 2.92
3831 4120 4.550063 CGGAAATGGACGTCATGAATTACG 60.550 45.833 18.91 12.56 44.47 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.