Multiple sequence alignment - TraesCS1D01G432900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G432900 chr1D 100.000 3955 0 0 1 3955 482368320 482372274 0.000000e+00 7304.0
1 TraesCS1D01G432900 chr1D 89.731 2493 160 29 593 3063 482323105 482325523 0.000000e+00 3097.0
2 TraesCS1D01G432900 chr1D 89.247 1832 180 11 1235 3056 482517261 482515437 0.000000e+00 2276.0
3 TraesCS1D01G432900 chr1D 88.178 1531 171 6 1431 2955 482492939 482491413 0.000000e+00 1816.0
4 TraesCS1D01G432900 chr1D 98.807 838 10 0 3118 3955 457154584 457155421 0.000000e+00 1493.0
5 TraesCS1D01G432900 chr1D 98.568 838 12 0 3118 3955 457023041 457023878 0.000000e+00 1482.0
6 TraesCS1D01G432900 chr1D 83.740 369 47 9 750 1110 482517737 482517374 1.760000e-88 337.0
7 TraesCS1D01G432900 chr1D 100.000 28 0 0 3078 3105 371214804 371214777 7.000000e-03 52.8
8 TraesCS1D01G432900 chr1B 90.152 2701 188 22 425 3063 670898879 670901563 0.000000e+00 3443.0
9 TraesCS1D01G432900 chr1B 88.159 1537 166 9 1431 2955 670957005 670958537 0.000000e+00 1816.0
10 TraesCS1D01G432900 chr1B 89.389 1310 131 4 1699 3001 670917383 670918691 0.000000e+00 1642.0
11 TraesCS1D01G432900 chr1B 87.600 1371 161 6 1698 3063 670947543 670948909 0.000000e+00 1581.0
12 TraesCS1D01G432900 chr1B 85.106 752 70 14 970 1692 670946666 670947404 0.000000e+00 730.0
13 TraesCS1D01G432900 chr1B 87.471 431 54 0 1235 1665 670916877 670917307 7.630000e-137 497.0
14 TraesCS1D01G432900 chr1B 87.097 217 15 5 707 913 670946420 670946633 2.380000e-57 233.0
15 TraesCS1D01G432900 chr1B 85.024 207 19 4 444 638 670946213 670946419 2.410000e-47 200.0
16 TraesCS1D01G432900 chrUn 88.261 2513 208 37 593 3063 1822777 1825244 0.000000e+00 2926.0
17 TraesCS1D01G432900 chrUn 92.801 1792 122 5 1279 3063 1926840 1928631 0.000000e+00 2588.0
18 TraesCS1D01G432900 chrUn 88.690 1848 189 16 1235 3063 1944322 1946168 0.000000e+00 2237.0
19 TraesCS1D01G432900 chrUn 88.293 914 77 17 443 1337 1925951 1926853 0.000000e+00 1068.0
20 TraesCS1D01G432900 chrUn 79.648 511 71 22 620 1112 1943737 1944232 1.760000e-88 337.0
21 TraesCS1D01G432900 chr5D 98.690 840 9 1 3118 3955 542636716 542637555 0.000000e+00 1489.0
22 TraesCS1D01G432900 chr5D 98.568 838 11 1 3118 3955 390980669 390981505 0.000000e+00 1480.0
23 TraesCS1D01G432900 chr5D 95.663 415 16 2 1 413 528919436 528919022 0.000000e+00 665.0
24 TraesCS1D01G432900 chr4D 98.690 840 9 1 3118 3955 314619174 314618335 0.000000e+00 1489.0
25 TraesCS1D01G432900 chr2D 98.690 840 9 1 3118 3955 636635817 636634978 0.000000e+00 1489.0
26 TraesCS1D01G432900 chr2D 98.573 841 9 1 3118 3955 644363512 644364352 0.000000e+00 1483.0
27 TraesCS1D01G432900 chr2D 96.852 413 13 0 1 413 492994137 492993725 0.000000e+00 691.0
28 TraesCS1D01G432900 chr2D 95.642 413 18 0 1 413 607703849 607704261 0.000000e+00 664.0
29 TraesCS1D01G432900 chr2D 94.484 417 21 2 1 416 557686596 557686181 3.330000e-180 641.0
30 TraesCS1D01G432900 chr2D 100.000 28 0 0 3078 3105 7484884 7484857 7.000000e-03 52.8
31 TraesCS1D01G432900 chr6D 98.568 838 12 0 3118 3955 143666415 143667252 0.000000e+00 1482.0
32 TraesCS1D01G432900 chr6D 95.169 414 19 1 1 413 143372738 143373151 0.000000e+00 652.0
33 TraesCS1D01G432900 chr3D 98.570 839 11 1 3118 3955 84543888 84544726 0.000000e+00 1482.0
34 TraesCS1D01G432900 chr3D 94.928 414 19 2 1 413 481525539 481525127 0.000000e+00 647.0
35 TraesCS1D01G432900 chr7A 95.745 423 15 3 2 423 594939516 594939936 0.000000e+00 678.0
36 TraesCS1D01G432900 chr7D 95.181 415 18 1 1 413 46761627 46762041 0.000000e+00 654.0
37 TraesCS1D01G432900 chr7D 94.928 414 20 1 1 413 385711293 385711706 0.000000e+00 647.0
38 TraesCS1D01G432900 chr7D 100.000 28 0 0 3078 3105 562656543 562656516 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G432900 chr1D 482368320 482372274 3954 False 7304.0 7304 100.00000 1 3955 1 chr1D.!!$F4 3954
1 TraesCS1D01G432900 chr1D 482323105 482325523 2418 False 3097.0 3097 89.73100 593 3063 1 chr1D.!!$F3 2470
2 TraesCS1D01G432900 chr1D 482491413 482492939 1526 True 1816.0 1816 88.17800 1431 2955 1 chr1D.!!$R2 1524
3 TraesCS1D01G432900 chr1D 457154584 457155421 837 False 1493.0 1493 98.80700 3118 3955 1 chr1D.!!$F2 837
4 TraesCS1D01G432900 chr1D 457023041 457023878 837 False 1482.0 1482 98.56800 3118 3955 1 chr1D.!!$F1 837
5 TraesCS1D01G432900 chr1D 482515437 482517737 2300 True 1306.5 2276 86.49350 750 3056 2 chr1D.!!$R3 2306
6 TraesCS1D01G432900 chr1B 670898879 670901563 2684 False 3443.0 3443 90.15200 425 3063 1 chr1B.!!$F1 2638
7 TraesCS1D01G432900 chr1B 670957005 670958537 1532 False 1816.0 1816 88.15900 1431 2955 1 chr1B.!!$F2 1524
8 TraesCS1D01G432900 chr1B 670916877 670918691 1814 False 1069.5 1642 88.43000 1235 3001 2 chr1B.!!$F3 1766
9 TraesCS1D01G432900 chr1B 670946213 670948909 2696 False 686.0 1581 86.20675 444 3063 4 chr1B.!!$F4 2619
10 TraesCS1D01G432900 chrUn 1822777 1825244 2467 False 2926.0 2926 88.26100 593 3063 1 chrUn.!!$F1 2470
11 TraesCS1D01G432900 chrUn 1925951 1928631 2680 False 1828.0 2588 90.54700 443 3063 2 chrUn.!!$F2 2620
12 TraesCS1D01G432900 chrUn 1943737 1946168 2431 False 1287.0 2237 84.16900 620 3063 2 chrUn.!!$F3 2443
13 TraesCS1D01G432900 chr5D 542636716 542637555 839 False 1489.0 1489 98.69000 3118 3955 1 chr5D.!!$F2 837
14 TraesCS1D01G432900 chr5D 390980669 390981505 836 False 1480.0 1480 98.56800 3118 3955 1 chr5D.!!$F1 837
15 TraesCS1D01G432900 chr4D 314618335 314619174 839 True 1489.0 1489 98.69000 3118 3955 1 chr4D.!!$R1 837
16 TraesCS1D01G432900 chr2D 636634978 636635817 839 True 1489.0 1489 98.69000 3118 3955 1 chr2D.!!$R4 837
17 TraesCS1D01G432900 chr2D 644363512 644364352 840 False 1483.0 1483 98.57300 3118 3955 1 chr2D.!!$F2 837
18 TraesCS1D01G432900 chr6D 143666415 143667252 837 False 1482.0 1482 98.56800 3118 3955 1 chr6D.!!$F2 837
19 TraesCS1D01G432900 chr3D 84543888 84544726 838 False 1482.0 1482 98.57000 3118 3955 1 chr3D.!!$F1 837

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.179089 CGTGATGAAGGAGGAGCAGG 60.179 60.0 0.0 0.0 0.00 4.85 F
261 262 0.179100 AACATGTATGCGAGCGAGCT 60.179 50.0 0.0 0.0 38.13 4.09 F
412 413 0.241481 TTTACGGGTCGGCAAAATGC 59.759 50.0 0.0 0.0 44.08 3.56 F
414 415 0.249676 TACGGGTCGGCAAAATGCTA 59.750 50.0 2.0 0.0 44.28 3.49 F
570 581 0.464036 TTCGTCCCCTTCGATCCATG 59.536 55.0 0.0 0.0 37.18 3.66 F
1388 1596 0.602905 CCGTCCTTGGTGGTCAGAAC 60.603 60.0 0.0 0.0 37.07 3.01 F
2327 2720 0.803117 CCGTGCTCTTCGTCACTCTA 59.197 55.0 0.0 0.0 0.00 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1687 1948 1.420138 ACACAAAGATGTCCCCGAAGT 59.580 47.619 0.00 0.0 37.82 3.01 R
2201 2594 1.145377 AACGACAGCGAGGTGGTTT 59.855 52.632 7.23 0.0 36.49 3.27 R
2327 2720 2.520536 GGTGGGGAGCCGCTGATAT 61.521 63.158 0.00 0.0 0.00 1.63 R
2561 2954 2.571757 GCCACACTCGTCATCGGA 59.428 61.111 0.00 0.0 37.69 4.55 R
2887 3286 0.251653 ACTGCCCCTCGTCTTGTAGA 60.252 55.000 0.00 0.0 0.00 2.59 R
2915 3314 0.035056 GCCCTTGTGCCACAGTAGAT 60.035 55.000 0.00 0.0 0.00 1.98 R
3298 3715 0.611618 TAGTCCCGGTTAGCCACGAA 60.612 55.000 0.00 0.0 34.09 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.267860 GCGCAGGCATCGAAGGAG 61.268 66.667 0.30 0.00 39.62 3.69
27 28 2.587194 CGCAGGCATCGAAGGAGG 60.587 66.667 0.00 0.00 0.00 4.30
32 33 2.586357 GCATCGAAGGAGGCCGAC 60.586 66.667 0.00 0.00 43.89 4.79
33 34 2.107141 CATCGAAGGAGGCCGACC 59.893 66.667 13.01 13.01 37.64 4.79
45 46 4.794439 CCGACCTGCGCGTGATGA 62.794 66.667 8.43 0.00 39.11 2.92
46 47 2.809174 CGACCTGCGCGTGATGAA 60.809 61.111 8.43 0.00 0.00 2.57
47 48 2.792290 CGACCTGCGCGTGATGAAG 61.792 63.158 8.43 0.00 0.00 3.02
48 49 2.434884 ACCTGCGCGTGATGAAGG 60.435 61.111 8.43 4.26 0.00 3.46
49 50 2.125552 CCTGCGCGTGATGAAGGA 60.126 61.111 8.43 0.00 0.00 3.36
50 51 2.169789 CCTGCGCGTGATGAAGGAG 61.170 63.158 8.43 0.00 0.00 3.69
51 52 2.125552 TGCGCGTGATGAAGGAGG 60.126 61.111 8.43 0.00 0.00 4.30
52 53 2.184322 GCGCGTGATGAAGGAGGA 59.816 61.111 8.43 0.00 0.00 3.71
53 54 1.880340 GCGCGTGATGAAGGAGGAG 60.880 63.158 8.43 0.00 0.00 3.69
54 55 1.880340 CGCGTGATGAAGGAGGAGC 60.880 63.158 0.00 0.00 0.00 4.70
55 56 1.219124 GCGTGATGAAGGAGGAGCA 59.781 57.895 0.00 0.00 0.00 4.26
56 57 0.809241 GCGTGATGAAGGAGGAGCAG 60.809 60.000 0.00 0.00 0.00 4.24
57 58 0.179089 CGTGATGAAGGAGGAGCAGG 60.179 60.000 0.00 0.00 0.00 4.85
58 59 0.463474 GTGATGAAGGAGGAGCAGGC 60.463 60.000 0.00 0.00 0.00 4.85
59 60 1.227497 GATGAAGGAGGAGCAGGCG 60.227 63.158 0.00 0.00 0.00 5.52
60 61 1.680522 GATGAAGGAGGAGCAGGCGA 61.681 60.000 0.00 0.00 0.00 5.54
61 62 1.267574 ATGAAGGAGGAGCAGGCGAA 61.268 55.000 0.00 0.00 0.00 4.70
62 63 1.153469 GAAGGAGGAGCAGGCGAAG 60.153 63.158 0.00 0.00 0.00 3.79
77 78 3.315972 GAAGCTCTTCGTCGACCTC 57.684 57.895 10.58 0.00 0.00 3.85
78 79 0.521659 GAAGCTCTTCGTCGACCTCG 60.522 60.000 10.58 0.00 41.45 4.63
79 80 1.924320 AAGCTCTTCGTCGACCTCGG 61.924 60.000 10.58 0.00 40.29 4.63
80 81 2.100603 CTCTTCGTCGACCTCGGC 59.899 66.667 10.58 0.00 41.13 5.54
81 82 2.359602 TCTTCGTCGACCTCGGCT 60.360 61.111 10.58 0.00 42.59 5.52
82 83 2.100603 CTTCGTCGACCTCGGCTC 59.899 66.667 10.58 0.00 42.59 4.70
83 84 3.398353 CTTCGTCGACCTCGGCTCC 62.398 68.421 10.58 0.00 42.59 4.70
86 87 4.176851 GTCGACCTCGGCTCCGAC 62.177 72.222 6.95 0.00 44.01 4.79
87 88 4.405671 TCGACCTCGGCTCCGACT 62.406 66.667 6.95 0.00 44.01 4.18
88 89 3.878519 CGACCTCGGCTCCGACTC 61.879 72.222 6.95 4.32 44.01 3.36
89 90 3.519930 GACCTCGGCTCCGACTCC 61.520 72.222 6.95 0.00 44.01 3.85
90 91 3.999297 GACCTCGGCTCCGACTCCT 62.999 68.421 6.95 0.00 44.01 3.69
91 92 3.213402 CCTCGGCTCCGACTCCTC 61.213 72.222 6.95 0.00 44.01 3.71
92 93 3.213402 CTCGGCTCCGACTCCTCC 61.213 72.222 6.95 0.00 44.01 4.30
95 96 3.519930 GGCTCCGACTCCTCCGAC 61.520 72.222 0.00 0.00 0.00 4.79
96 97 2.438795 GCTCCGACTCCTCCGACT 60.439 66.667 0.00 0.00 0.00 4.18
97 98 2.474612 GCTCCGACTCCTCCGACTC 61.475 68.421 0.00 0.00 0.00 3.36
98 99 1.820481 CTCCGACTCCTCCGACTCC 60.820 68.421 0.00 0.00 0.00 3.85
99 100 3.203412 CCGACTCCTCCGACTCCG 61.203 72.222 0.00 0.00 0.00 4.63
100 101 2.125229 CGACTCCTCCGACTCCGA 60.125 66.667 0.00 0.00 38.22 4.55
101 102 2.462782 CGACTCCTCCGACTCCGAC 61.463 68.421 0.00 0.00 38.22 4.79
102 103 1.078285 GACTCCTCCGACTCCGACT 60.078 63.158 0.00 0.00 38.22 4.18
103 104 1.370587 GACTCCTCCGACTCCGACTG 61.371 65.000 0.00 0.00 38.22 3.51
104 105 1.078356 CTCCTCCGACTCCGACTGA 60.078 63.158 0.00 0.00 38.22 3.41
105 106 0.464735 CTCCTCCGACTCCGACTGAT 60.465 60.000 0.00 0.00 38.22 2.90
106 107 0.464013 TCCTCCGACTCCGACTGATC 60.464 60.000 0.00 0.00 38.22 2.92
143 144 4.504916 CGCAGGAGCTCCGGTGAG 62.505 72.222 34.61 22.75 43.00 3.51
153 154 2.907910 CTCCGGTGAGCTCAATTTTG 57.092 50.000 20.19 6.47 0.00 2.44
154 155 2.154462 CTCCGGTGAGCTCAATTTTGT 58.846 47.619 20.19 0.00 0.00 2.83
155 156 2.554032 CTCCGGTGAGCTCAATTTTGTT 59.446 45.455 20.19 0.00 0.00 2.83
156 157 2.293122 TCCGGTGAGCTCAATTTTGTTG 59.707 45.455 20.19 2.12 0.00 3.33
157 158 2.053627 CGGTGAGCTCAATTTTGTTGC 58.946 47.619 20.19 1.96 0.00 4.17
158 159 2.543445 CGGTGAGCTCAATTTTGTTGCA 60.543 45.455 20.19 0.00 33.67 4.08
159 160 3.054878 GGTGAGCTCAATTTTGTTGCAG 58.945 45.455 20.19 0.00 33.67 4.41
160 161 3.491447 GGTGAGCTCAATTTTGTTGCAGT 60.491 43.478 20.19 0.00 33.67 4.40
161 162 3.488310 GTGAGCTCAATTTTGTTGCAGTG 59.512 43.478 20.19 0.00 33.67 3.66
162 163 3.380954 TGAGCTCAATTTTGTTGCAGTGA 59.619 39.130 15.67 0.00 33.67 3.41
163 164 4.038282 TGAGCTCAATTTTGTTGCAGTGAT 59.962 37.500 15.67 0.00 33.67 3.06
164 165 4.304110 AGCTCAATTTTGTTGCAGTGATG 58.696 39.130 0.00 0.00 33.67 3.07
165 166 3.120786 GCTCAATTTTGTTGCAGTGATGC 60.121 43.478 0.00 0.00 0.00 3.91
166 167 3.051327 TCAATTTTGTTGCAGTGATGCG 58.949 40.909 0.00 0.00 37.69 4.73
167 168 2.068837 ATTTTGTTGCAGTGATGCGG 57.931 45.000 0.00 0.00 37.69 5.69
168 169 0.743688 TTTTGTTGCAGTGATGCGGT 59.256 45.000 0.00 0.00 37.69 5.68
169 170 1.598882 TTTGTTGCAGTGATGCGGTA 58.401 45.000 0.00 0.00 37.69 4.02
170 171 1.155889 TTGTTGCAGTGATGCGGTAG 58.844 50.000 0.00 0.00 37.69 3.18
171 172 1.298157 TGTTGCAGTGATGCGGTAGC 61.298 55.000 0.00 0.00 45.41 3.58
181 182 2.031163 GCGGTAGCATAGGCCCTG 59.969 66.667 0.00 0.00 44.35 4.45
182 183 2.808206 GCGGTAGCATAGGCCCTGT 61.808 63.158 0.00 0.00 44.35 4.00
183 184 1.367840 CGGTAGCATAGGCCCTGTC 59.632 63.158 0.00 0.00 42.56 3.51
184 185 1.115930 CGGTAGCATAGGCCCTGTCT 61.116 60.000 0.00 2.29 42.56 3.41
185 186 1.822062 CGGTAGCATAGGCCCTGTCTA 60.822 57.143 0.00 1.32 42.56 2.59
186 187 1.896465 GGTAGCATAGGCCCTGTCTAG 59.104 57.143 0.00 0.00 42.56 2.43
187 188 1.273886 GTAGCATAGGCCCTGTCTAGC 59.726 57.143 0.00 0.00 42.56 3.42
188 189 0.399091 AGCATAGGCCCTGTCTAGCA 60.399 55.000 0.00 0.00 42.56 3.49
189 190 0.689623 GCATAGGCCCTGTCTAGCAT 59.310 55.000 0.00 0.00 0.00 3.79
190 191 1.902508 GCATAGGCCCTGTCTAGCATA 59.097 52.381 0.00 0.00 0.00 3.14
191 192 2.503356 GCATAGGCCCTGTCTAGCATAT 59.497 50.000 0.00 0.00 36.48 1.78
192 193 3.431486 GCATAGGCCCTGTCTAGCATATC 60.431 52.174 0.00 0.00 34.00 1.63
193 194 2.711895 AGGCCCTGTCTAGCATATCT 57.288 50.000 0.00 0.00 0.00 1.98
194 195 3.835478 AGGCCCTGTCTAGCATATCTA 57.165 47.619 0.00 0.00 0.00 1.98
195 196 4.133526 AGGCCCTGTCTAGCATATCTAA 57.866 45.455 0.00 0.00 0.00 2.10
196 197 3.835395 AGGCCCTGTCTAGCATATCTAAC 59.165 47.826 0.00 0.00 0.00 2.34
197 198 3.055747 GGCCCTGTCTAGCATATCTAACC 60.056 52.174 0.00 0.00 0.00 2.85
198 199 3.835395 GCCCTGTCTAGCATATCTAACCT 59.165 47.826 0.00 0.00 0.00 3.50
199 200 4.081917 GCCCTGTCTAGCATATCTAACCTC 60.082 50.000 0.00 0.00 0.00 3.85
200 201 5.329399 CCCTGTCTAGCATATCTAACCTCT 58.671 45.833 0.00 0.00 0.00 3.69
201 202 6.486056 CCCTGTCTAGCATATCTAACCTCTA 58.514 44.000 0.00 0.00 0.00 2.43
202 203 7.122715 CCCTGTCTAGCATATCTAACCTCTAT 58.877 42.308 0.00 0.00 0.00 1.98
203 204 7.068103 CCCTGTCTAGCATATCTAACCTCTATG 59.932 44.444 0.00 0.00 0.00 2.23
204 205 7.613801 CCTGTCTAGCATATCTAACCTCTATGT 59.386 40.741 0.00 0.00 0.00 2.29
205 206 9.674068 CTGTCTAGCATATCTAACCTCTATGTA 57.326 37.037 0.00 0.00 0.00 2.29
212 213 9.469807 GCATATCTAACCTCTATGTATGTATGC 57.530 37.037 0.00 0.00 34.73 3.14
213 214 9.670719 CATATCTAACCTCTATGTATGTATGCG 57.329 37.037 0.00 0.00 0.00 4.73
214 215 6.510879 TCTAACCTCTATGTATGTATGCGG 57.489 41.667 0.00 0.00 0.00 5.69
215 216 3.594603 ACCTCTATGTATGTATGCGGC 57.405 47.619 0.00 0.00 0.00 6.53
216 217 2.094700 ACCTCTATGTATGTATGCGGCG 60.095 50.000 0.51 0.51 0.00 6.46
217 218 2.094700 CCTCTATGTATGTATGCGGCGT 60.095 50.000 9.37 0.00 0.00 5.68
218 219 2.917343 CTCTATGTATGTATGCGGCGTG 59.083 50.000 9.37 0.00 0.00 5.34
219 220 2.295070 TCTATGTATGTATGCGGCGTGT 59.705 45.455 9.37 0.00 0.00 4.49
220 221 2.804697 ATGTATGTATGCGGCGTGTA 57.195 45.000 9.37 0.00 0.00 2.90
221 222 2.804697 TGTATGTATGCGGCGTGTAT 57.195 45.000 9.37 3.66 0.00 2.29
222 223 2.399448 TGTATGTATGCGGCGTGTATG 58.601 47.619 9.37 0.00 0.00 2.39
223 224 2.034812 TGTATGTATGCGGCGTGTATGA 59.965 45.455 9.37 0.00 0.00 2.15
224 225 2.232756 ATGTATGCGGCGTGTATGAA 57.767 45.000 9.37 0.00 0.00 2.57
225 226 1.282817 TGTATGCGGCGTGTATGAAC 58.717 50.000 9.37 0.00 0.00 3.18
226 227 1.134936 TGTATGCGGCGTGTATGAACT 60.135 47.619 9.37 0.00 0.00 3.01
227 228 1.931172 GTATGCGGCGTGTATGAACTT 59.069 47.619 9.37 0.00 0.00 2.66
228 229 2.303163 ATGCGGCGTGTATGAACTTA 57.697 45.000 9.37 0.00 0.00 2.24
229 230 2.303163 TGCGGCGTGTATGAACTTAT 57.697 45.000 9.37 0.00 0.00 1.73
230 231 2.623535 TGCGGCGTGTATGAACTTATT 58.376 42.857 9.37 0.00 0.00 1.40
231 232 3.004171 TGCGGCGTGTATGAACTTATTT 58.996 40.909 9.37 0.00 0.00 1.40
232 233 3.181515 TGCGGCGTGTATGAACTTATTTG 60.182 43.478 9.37 0.00 0.00 2.32
233 234 3.350912 CGGCGTGTATGAACTTATTTGC 58.649 45.455 0.00 0.00 0.00 3.68
234 235 3.350912 GGCGTGTATGAACTTATTTGCG 58.649 45.455 0.00 0.00 0.00 4.85
235 236 3.062909 GGCGTGTATGAACTTATTTGCGA 59.937 43.478 0.00 0.00 0.00 5.10
236 237 4.436317 GGCGTGTATGAACTTATTTGCGAA 60.436 41.667 0.00 0.00 0.00 4.70
237 238 4.723862 GCGTGTATGAACTTATTTGCGAAG 59.276 41.667 0.00 0.00 0.00 3.79
238 239 5.445407 GCGTGTATGAACTTATTTGCGAAGA 60.445 40.000 0.00 0.00 0.00 2.87
239 240 6.530567 CGTGTATGAACTTATTTGCGAAGAA 58.469 36.000 0.00 0.00 0.00 2.52
240 241 6.678663 CGTGTATGAACTTATTTGCGAAGAAG 59.321 38.462 17.66 17.66 39.42 2.85
241 242 7.411480 CGTGTATGAACTTATTTGCGAAGAAGA 60.411 37.037 24.47 5.83 36.44 2.87
242 243 8.227791 GTGTATGAACTTATTTGCGAAGAAGAA 58.772 33.333 24.47 11.69 36.44 2.52
243 244 8.779303 TGTATGAACTTATTTGCGAAGAAGAAA 58.221 29.630 24.47 11.39 36.44 2.52
244 245 9.052080 GTATGAACTTATTTGCGAAGAAGAAAC 57.948 33.333 24.47 15.32 36.44 2.78
245 246 7.022055 TGAACTTATTTGCGAAGAAGAAACA 57.978 32.000 24.47 17.19 36.44 2.83
246 247 7.648142 TGAACTTATTTGCGAAGAAGAAACAT 58.352 30.769 24.47 7.62 36.44 2.71
247 248 7.591057 TGAACTTATTTGCGAAGAAGAAACATG 59.409 33.333 24.47 1.02 36.44 3.21
248 249 6.970484 ACTTATTTGCGAAGAAGAAACATGT 58.030 32.000 24.47 0.00 36.44 3.21
249 250 8.094798 ACTTATTTGCGAAGAAGAAACATGTA 57.905 30.769 24.47 0.00 36.44 2.29
250 251 8.730680 ACTTATTTGCGAAGAAGAAACATGTAT 58.269 29.630 24.47 0.00 36.44 2.29
251 252 8.894409 TTATTTGCGAAGAAGAAACATGTATG 57.106 30.769 0.00 0.00 0.00 2.39
252 253 4.340894 TGCGAAGAAGAAACATGTATGC 57.659 40.909 0.00 0.00 0.00 3.14
253 254 3.181521 TGCGAAGAAGAAACATGTATGCG 60.182 43.478 0.00 0.00 0.00 4.73
254 255 3.062099 GCGAAGAAGAAACATGTATGCGA 59.938 43.478 0.00 0.00 0.00 5.10
255 256 4.780324 GCGAAGAAGAAACATGTATGCGAG 60.780 45.833 0.00 0.00 0.00 5.03
256 257 4.582459 GAAGAAGAAACATGTATGCGAGC 58.418 43.478 0.00 0.00 0.00 5.03
257 258 2.604914 AGAAGAAACATGTATGCGAGCG 59.395 45.455 0.00 0.00 0.00 5.03
258 259 2.293677 AGAAACATGTATGCGAGCGA 57.706 45.000 0.00 0.00 0.00 4.93
259 260 2.196749 AGAAACATGTATGCGAGCGAG 58.803 47.619 0.00 0.00 0.00 5.03
260 261 0.652592 AAACATGTATGCGAGCGAGC 59.347 50.000 0.00 0.00 37.71 5.03
261 262 0.179100 AACATGTATGCGAGCGAGCT 60.179 50.000 0.00 0.00 38.13 4.09
262 263 0.596083 ACATGTATGCGAGCGAGCTC 60.596 55.000 14.61 14.61 39.55 4.09
263 264 1.006805 ATGTATGCGAGCGAGCTCC 60.007 57.895 18.19 11.85 39.77 4.70
264 265 2.727647 GTATGCGAGCGAGCTCCG 60.728 66.667 18.19 14.07 39.77 4.63
265 266 3.966104 TATGCGAGCGAGCTCCGG 61.966 66.667 18.19 0.00 39.77 5.14
277 278 2.357517 CTCCGGCGAGCTGTTGTT 60.358 61.111 9.30 0.00 0.00 2.83
278 279 1.961277 CTCCGGCGAGCTGTTGTTT 60.961 57.895 9.30 0.00 0.00 2.83
279 280 0.669318 CTCCGGCGAGCTGTTGTTTA 60.669 55.000 9.30 0.00 0.00 2.01
280 281 0.249953 TCCGGCGAGCTGTTGTTTAA 60.250 50.000 9.30 0.00 0.00 1.52
281 282 0.589223 CCGGCGAGCTGTTGTTTAAA 59.411 50.000 9.30 0.00 0.00 1.52
282 283 1.199097 CCGGCGAGCTGTTGTTTAAAT 59.801 47.619 9.30 0.00 0.00 1.40
283 284 2.351350 CCGGCGAGCTGTTGTTTAAATT 60.351 45.455 9.30 0.00 0.00 1.82
284 285 3.305110 CGGCGAGCTGTTGTTTAAATTT 58.695 40.909 0.00 0.00 0.00 1.82
285 286 3.360758 CGGCGAGCTGTTGTTTAAATTTC 59.639 43.478 0.00 0.00 0.00 2.17
286 287 4.546570 GGCGAGCTGTTGTTTAAATTTCT 58.453 39.130 0.00 0.00 0.00 2.52
287 288 4.617223 GGCGAGCTGTTGTTTAAATTTCTC 59.383 41.667 0.00 0.00 0.00 2.87
288 289 5.212194 GCGAGCTGTTGTTTAAATTTCTCA 58.788 37.500 0.00 0.00 0.00 3.27
289 290 5.858581 GCGAGCTGTTGTTTAAATTTCTCAT 59.141 36.000 0.00 0.00 0.00 2.90
290 291 6.183359 GCGAGCTGTTGTTTAAATTTCTCATG 60.183 38.462 0.00 0.00 0.00 3.07
291 292 6.183359 CGAGCTGTTGTTTAAATTTCTCATGC 60.183 38.462 0.00 0.00 0.00 4.06
292 293 5.630680 AGCTGTTGTTTAAATTTCTCATGCG 59.369 36.000 0.00 0.00 0.00 4.73
293 294 5.629020 GCTGTTGTTTAAATTTCTCATGCGA 59.371 36.000 0.00 0.00 0.00 5.10
294 295 6.143758 GCTGTTGTTTAAATTTCTCATGCGAA 59.856 34.615 0.00 0.00 0.00 4.70
295 296 7.306515 GCTGTTGTTTAAATTTCTCATGCGAAA 60.307 33.333 12.92 12.92 37.31 3.46
296 297 7.836512 TGTTGTTTAAATTTCTCATGCGAAAC 58.163 30.769 12.82 1.37 35.88 2.78
297 298 7.489435 TGTTGTTTAAATTTCTCATGCGAAACA 59.511 29.630 12.82 3.93 35.88 2.83
298 299 7.993821 TGTTTAAATTTCTCATGCGAAACAA 57.006 28.000 12.82 5.53 35.88 2.83
299 300 7.836512 TGTTTAAATTTCTCATGCGAAACAAC 58.163 30.769 12.82 12.81 35.88 3.32
300 301 7.489435 TGTTTAAATTTCTCATGCGAAACAACA 59.511 29.630 12.82 14.74 35.88 3.33
301 302 8.487176 GTTTAAATTTCTCATGCGAAACAACAT 58.513 29.630 12.82 0.00 35.88 2.71
302 303 8.586570 TTAAATTTCTCATGCGAAACAACATT 57.413 26.923 12.82 1.13 35.88 2.71
303 304 7.481275 AAATTTCTCATGCGAAACAACATTT 57.519 28.000 12.82 6.89 35.88 2.32
304 305 7.481275 AATTTCTCATGCGAAACAACATTTT 57.519 28.000 12.82 0.00 35.88 1.82
305 306 6.900568 TTTCTCATGCGAAACAACATTTTT 57.099 29.167 6.77 0.00 0.00 1.94
326 327 7.541122 TTTTTGAAATTTAAGGGTCCGTTTG 57.459 32.000 1.39 0.00 0.00 2.93
327 328 4.245845 TGAAATTTAAGGGTCCGTTTGC 57.754 40.909 1.39 0.00 0.00 3.68
328 329 3.239254 GAAATTTAAGGGTCCGTTTGCG 58.761 45.455 1.39 0.00 37.95 4.85
340 341 2.856091 CGTTTGCGGTTTCTAGTCTG 57.144 50.000 0.00 0.00 0.00 3.51
341 342 1.136336 CGTTTGCGGTTTCTAGTCTGC 60.136 52.381 8.41 8.41 36.59 4.26
342 343 1.197036 GTTTGCGGTTTCTAGTCTGCC 59.803 52.381 11.33 1.31 35.35 4.85
343 344 0.669318 TTGCGGTTTCTAGTCTGCCG 60.669 55.000 11.35 11.35 44.60 5.69
344 345 3.782042 CGGTTTCTAGTCTGCCGC 58.218 61.111 0.00 0.00 35.90 6.53
345 346 1.810030 CGGTTTCTAGTCTGCCGCC 60.810 63.158 0.00 0.00 35.90 6.13
346 347 1.810030 GGTTTCTAGTCTGCCGCCG 60.810 63.158 0.00 0.00 0.00 6.46
347 348 2.125673 TTTCTAGTCTGCCGCCGC 60.126 61.111 0.00 0.00 0.00 6.53
348 349 2.938086 TTTCTAGTCTGCCGCCGCA 61.938 57.895 0.00 0.00 44.78 5.69
349 350 2.443260 TTTCTAGTCTGCCGCCGCAA 62.443 55.000 0.47 0.00 46.66 4.85
350 351 2.202932 CTAGTCTGCCGCCGCAAT 60.203 61.111 0.47 0.00 46.66 3.56
351 352 1.815421 CTAGTCTGCCGCCGCAATT 60.815 57.895 0.47 0.00 46.66 2.32
352 353 1.369091 CTAGTCTGCCGCCGCAATTT 61.369 55.000 0.47 0.00 46.66 1.82
353 354 0.958382 TAGTCTGCCGCCGCAATTTT 60.958 50.000 0.47 0.00 46.66 1.82
354 355 1.801512 GTCTGCCGCCGCAATTTTC 60.802 57.895 0.47 0.00 46.66 2.29
355 356 2.257980 CTGCCGCCGCAATTTTCA 59.742 55.556 0.47 0.00 46.66 2.69
356 357 1.802715 CTGCCGCCGCAATTTTCAG 60.803 57.895 0.47 0.00 46.66 3.02
357 358 3.181290 GCCGCCGCAATTTTCAGC 61.181 61.111 0.00 0.00 34.03 4.26
358 359 2.506881 CCGCCGCAATTTTCAGCC 60.507 61.111 0.00 0.00 0.00 4.85
359 360 2.568090 CGCCGCAATTTTCAGCCT 59.432 55.556 0.00 0.00 0.00 4.58
360 361 1.653094 CCGCCGCAATTTTCAGCCTA 61.653 55.000 0.00 0.00 0.00 3.93
361 362 0.523335 CGCCGCAATTTTCAGCCTAC 60.523 55.000 0.00 0.00 0.00 3.18
362 363 0.525761 GCCGCAATTTTCAGCCTACA 59.474 50.000 0.00 0.00 0.00 2.74
363 364 1.134946 GCCGCAATTTTCAGCCTACAT 59.865 47.619 0.00 0.00 0.00 2.29
364 365 2.357637 GCCGCAATTTTCAGCCTACATA 59.642 45.455 0.00 0.00 0.00 2.29
365 366 3.181491 GCCGCAATTTTCAGCCTACATAA 60.181 43.478 0.00 0.00 0.00 1.90
366 367 4.499696 GCCGCAATTTTCAGCCTACATAAT 60.500 41.667 0.00 0.00 0.00 1.28
367 368 5.215160 CCGCAATTTTCAGCCTACATAATC 58.785 41.667 0.00 0.00 0.00 1.75
368 369 4.905866 CGCAATTTTCAGCCTACATAATCG 59.094 41.667 0.00 0.00 0.00 3.34
369 370 4.676924 GCAATTTTCAGCCTACATAATCGC 59.323 41.667 0.00 0.00 0.00 4.58
370 371 5.215160 CAATTTTCAGCCTACATAATCGCC 58.785 41.667 0.00 0.00 0.00 5.54
371 372 2.543777 TTCAGCCTACATAATCGCCC 57.456 50.000 0.00 0.00 0.00 6.13
372 373 0.685097 TCAGCCTACATAATCGCCCC 59.315 55.000 0.00 0.00 0.00 5.80
373 374 0.321653 CAGCCTACATAATCGCCCCC 60.322 60.000 0.00 0.00 0.00 5.40
374 375 1.375523 GCCTACATAATCGCCCCCG 60.376 63.158 0.00 0.00 0.00 5.73
375 376 2.055299 CCTACATAATCGCCCCCGT 58.945 57.895 0.00 0.00 35.54 5.28
376 377 0.320421 CCTACATAATCGCCCCCGTG 60.320 60.000 0.00 0.00 35.54 4.94
377 378 0.949105 CTACATAATCGCCCCCGTGC 60.949 60.000 0.00 0.00 35.54 5.34
386 387 3.697747 CCCCCGTGCGACCTACAA 61.698 66.667 0.00 0.00 0.00 2.41
387 388 2.344500 CCCCGTGCGACCTACAAA 59.656 61.111 0.00 0.00 0.00 2.83
388 389 2.030958 CCCCGTGCGACCTACAAAC 61.031 63.158 0.00 0.00 0.00 2.93
389 390 1.301087 CCCGTGCGACCTACAAACA 60.301 57.895 0.00 0.00 0.00 2.83
390 391 1.562575 CCCGTGCGACCTACAAACAC 61.563 60.000 0.00 0.00 0.00 3.32
391 392 0.876777 CCGTGCGACCTACAAACACA 60.877 55.000 0.00 0.00 0.00 3.72
392 393 1.144969 CGTGCGACCTACAAACACAT 58.855 50.000 0.00 0.00 0.00 3.21
393 394 1.529438 CGTGCGACCTACAAACACATT 59.471 47.619 0.00 0.00 0.00 2.71
394 395 2.032377 CGTGCGACCTACAAACACATTT 60.032 45.455 0.00 0.00 0.00 2.32
395 396 3.547214 CGTGCGACCTACAAACACATTTT 60.547 43.478 0.00 0.00 0.00 1.82
396 397 4.318903 CGTGCGACCTACAAACACATTTTA 60.319 41.667 0.00 0.00 0.00 1.52
397 398 4.907582 GTGCGACCTACAAACACATTTTAC 59.092 41.667 0.00 0.00 0.00 2.01
398 399 4.145997 GCGACCTACAAACACATTTTACG 58.854 43.478 0.00 0.00 0.00 3.18
399 400 4.704457 CGACCTACAAACACATTTTACGG 58.296 43.478 0.00 0.00 0.00 4.02
400 401 4.377635 CGACCTACAAACACATTTTACGGG 60.378 45.833 0.00 0.00 0.00 5.28
401 402 4.463070 ACCTACAAACACATTTTACGGGT 58.537 39.130 0.00 0.00 0.00 5.28
402 403 4.516321 ACCTACAAACACATTTTACGGGTC 59.484 41.667 0.00 0.00 0.00 4.46
403 404 3.612472 ACAAACACATTTTACGGGTCG 57.388 42.857 0.00 0.00 0.00 4.79
404 405 2.291190 ACAAACACATTTTACGGGTCGG 59.709 45.455 0.00 0.00 0.00 4.79
405 406 0.876399 AACACATTTTACGGGTCGGC 59.124 50.000 0.00 0.00 0.00 5.54
406 407 0.250381 ACACATTTTACGGGTCGGCA 60.250 50.000 0.00 0.00 0.00 5.69
407 408 0.875728 CACATTTTACGGGTCGGCAA 59.124 50.000 0.00 0.00 0.00 4.52
408 409 1.267261 CACATTTTACGGGTCGGCAAA 59.733 47.619 0.00 0.00 0.00 3.68
409 410 1.955080 ACATTTTACGGGTCGGCAAAA 59.045 42.857 0.00 0.00 32.64 2.44
410 411 2.559231 ACATTTTACGGGTCGGCAAAAT 59.441 40.909 0.00 8.18 36.66 1.82
411 412 2.708386 TTTTACGGGTCGGCAAAATG 57.292 45.000 0.00 0.00 0.00 2.32
412 413 0.241481 TTTACGGGTCGGCAAAATGC 59.759 50.000 0.00 0.00 44.08 3.56
413 414 0.606944 TTACGGGTCGGCAAAATGCT 60.607 50.000 2.00 0.00 44.28 3.79
414 415 0.249676 TACGGGTCGGCAAAATGCTA 59.750 50.000 2.00 0.00 44.28 3.49
415 416 1.024579 ACGGGTCGGCAAAATGCTAG 61.025 55.000 2.00 0.00 44.28 3.42
416 417 0.742990 CGGGTCGGCAAAATGCTAGA 60.743 55.000 2.00 0.20 44.28 2.43
417 418 1.017387 GGGTCGGCAAAATGCTAGAG 58.983 55.000 2.00 0.00 44.28 2.43
418 419 1.679032 GGGTCGGCAAAATGCTAGAGT 60.679 52.381 2.00 0.00 44.28 3.24
419 420 2.084546 GGTCGGCAAAATGCTAGAGTT 58.915 47.619 2.00 0.00 44.28 3.01
420 421 2.159517 GGTCGGCAAAATGCTAGAGTTG 60.160 50.000 2.00 0.00 44.28 3.16
421 422 1.468520 TCGGCAAAATGCTAGAGTTGC 59.531 47.619 2.00 2.80 44.28 4.17
422 423 1.470098 CGGCAAAATGCTAGAGTTGCT 59.530 47.619 15.29 0.00 44.54 3.91
423 424 2.476854 CGGCAAAATGCTAGAGTTGCTC 60.477 50.000 15.29 8.25 44.54 4.26
424 425 2.751806 GGCAAAATGCTAGAGTTGCTCT 59.248 45.455 15.29 4.02 44.54 4.09
425 426 3.192212 GGCAAAATGCTAGAGTTGCTCTT 59.808 43.478 15.29 0.00 44.54 2.85
426 427 4.396166 GGCAAAATGCTAGAGTTGCTCTTA 59.604 41.667 15.29 0.00 44.54 2.10
427 428 5.448360 GGCAAAATGCTAGAGTTGCTCTTAG 60.448 44.000 15.29 2.21 44.54 2.18
428 429 5.448360 GCAAAATGCTAGAGTTGCTCTTAGG 60.448 44.000 3.87 0.00 42.41 2.69
429 430 5.683876 AAATGCTAGAGTTGCTCTTAGGA 57.316 39.130 3.87 2.62 41.50 2.94
430 431 4.935352 ATGCTAGAGTTGCTCTTAGGAG 57.065 45.455 3.87 0.00 41.50 3.69
439 440 2.727103 CTCTTAGGAGCGGAGGGAG 58.273 63.158 0.00 0.00 32.43 4.30
440 441 1.455959 TCTTAGGAGCGGAGGGAGC 60.456 63.158 0.00 0.00 0.00 4.70
441 442 1.758514 CTTAGGAGCGGAGGGAGCA 60.759 63.158 0.00 0.00 37.01 4.26
513 514 4.701651 TCTCCATCACAATTCACACAATCC 59.298 41.667 0.00 0.00 0.00 3.01
570 581 0.464036 TTCGTCCCCTTCGATCCATG 59.536 55.000 0.00 0.00 37.18 3.66
733 788 1.733399 GTTCTCCTCCACGTGCGTC 60.733 63.158 10.91 0.00 0.00 5.19
743 798 4.530857 CGTGCGTCCCTCATCCCC 62.531 72.222 0.00 0.00 0.00 4.81
748 804 2.042930 GTCCCTCATCCCCACCCT 59.957 66.667 0.00 0.00 0.00 4.34
776 832 3.625897 CGCTGACCTGACCACCCA 61.626 66.667 0.00 0.00 0.00 4.51
777 834 2.836154 GCTGACCTGACCACCCAA 59.164 61.111 0.00 0.00 0.00 4.12
862 927 2.927856 TCCACTCGGGCCATGTGT 60.928 61.111 19.89 0.00 36.21 3.72
863 928 2.747460 CCACTCGGGCCATGTGTG 60.747 66.667 19.89 17.70 0.00 3.82
913 978 3.791245 TGCGATGCACATACATTCACTA 58.209 40.909 0.00 0.00 31.71 2.74
945 1010 1.080772 ATCTCGCACGCGTCTTCAA 60.081 52.632 9.86 0.00 40.74 2.69
1033 1125 1.144716 GTCAGCATCCAGATGGCGA 59.855 57.895 9.58 2.58 39.16 5.54
1047 1139 2.753043 GCGAGGGTACTGGACGGA 60.753 66.667 0.00 0.00 0.00 4.69
1206 1348 2.206515 CTGAGACGCCGAGCTCTGTT 62.207 60.000 12.85 0.00 32.44 3.16
1214 1356 1.806542 GCCGAGCTCTGTTTTGATCAA 59.193 47.619 12.85 3.38 0.00 2.57
1387 1595 1.752198 CCGTCCTTGGTGGTCAGAA 59.248 57.895 0.00 0.00 37.07 3.02
1388 1596 0.602905 CCGTCCTTGGTGGTCAGAAC 60.603 60.000 0.00 0.00 37.07 3.01
1685 1946 7.532884 GTGTAGTATTCCAGCAAAAAGTTTACG 59.467 37.037 0.00 0.00 0.00 3.18
1686 1947 6.628919 AGTATTCCAGCAAAAAGTTTACGT 57.371 33.333 0.00 0.00 0.00 3.57
1687 1948 7.733402 AGTATTCCAGCAAAAAGTTTACGTA 57.267 32.000 0.00 0.00 0.00 3.57
1688 1949 7.578852 AGTATTCCAGCAAAAAGTTTACGTAC 58.421 34.615 0.00 0.00 0.00 3.67
1690 1951 6.439675 TTCCAGCAAAAAGTTTACGTACTT 57.560 33.333 0.00 0.00 39.97 2.24
1692 1953 4.901881 CCAGCAAAAAGTTTACGTACTTCG 59.098 41.667 4.26 0.00 46.00 3.79
1693 1954 4.901881 CAGCAAAAAGTTTACGTACTTCGG 59.098 41.667 4.26 0.00 44.69 4.30
1694 1955 4.024641 AGCAAAAAGTTTACGTACTTCGGG 60.025 41.667 4.26 0.00 44.69 5.14
1695 1956 4.775664 CAAAAAGTTTACGTACTTCGGGG 58.224 43.478 4.26 0.00 44.69 5.73
2327 2720 0.803117 CCGTGCTCTTCGTCACTCTA 59.197 55.000 0.00 0.00 0.00 2.43
2561 2954 1.173043 CATGGTGGGCGTACACATTT 58.827 50.000 12.45 0.00 43.08 2.32
2887 3286 2.031616 CGATGATGCCGGCTCCAT 59.968 61.111 29.70 27.71 0.00 3.41
2900 3299 1.067821 GGCTCCATCTACAAGACGAGG 59.932 57.143 0.00 0.00 29.30 4.63
2930 3329 1.438651 GCGAATCTACTGTGGCACAA 58.561 50.000 22.31 7.02 44.16 3.33
2996 3402 1.065928 ATGTACGCACGGCTAGCTC 59.934 57.895 15.72 3.82 0.00 4.09
3018 3431 6.183360 GCTCATGTTGATTGTGCTTGTATAGT 60.183 38.462 0.00 0.00 32.38 2.12
3065 3479 8.889849 TTCTTTTTCTTCTTTGTGAACTTACG 57.110 30.769 0.00 0.00 0.00 3.18
3066 3480 8.259049 TCTTTTTCTTCTTTGTGAACTTACGA 57.741 30.769 0.00 0.00 0.00 3.43
3067 3481 8.723311 TCTTTTTCTTCTTTGTGAACTTACGAA 58.277 29.630 0.00 0.00 0.00 3.85
3068 3482 8.663771 TTTTTCTTCTTTGTGAACTTACGAAC 57.336 30.769 0.00 0.00 0.00 3.95
3069 3483 5.978934 TCTTCTTTGTGAACTTACGAACC 57.021 39.130 0.00 0.00 0.00 3.62
3070 3484 4.505191 TCTTCTTTGTGAACTTACGAACCG 59.495 41.667 0.00 0.00 0.00 4.44
3071 3485 2.540931 TCTTTGTGAACTTACGAACCGC 59.459 45.455 0.00 0.00 0.00 5.68
3073 3487 0.030504 TGTGAACTTACGAACCGCGA 59.969 50.000 8.23 0.00 44.57 5.87
3074 3488 0.432361 GTGAACTTACGAACCGCGAC 59.568 55.000 8.23 0.00 44.57 5.19
3075 3489 0.664166 TGAACTTACGAACCGCGACC 60.664 55.000 8.23 0.00 44.57 4.79
3076 3490 0.664166 GAACTTACGAACCGCGACCA 60.664 55.000 8.23 0.00 44.57 4.02
3077 3491 0.037975 AACTTACGAACCGCGACCAT 60.038 50.000 8.23 0.00 44.57 3.55
3078 3492 0.037975 ACTTACGAACCGCGACCATT 60.038 50.000 8.23 0.00 44.57 3.16
3079 3493 1.202114 ACTTACGAACCGCGACCATTA 59.798 47.619 8.23 0.00 44.57 1.90
3080 3494 2.261345 CTTACGAACCGCGACCATTAA 58.739 47.619 8.23 0.00 44.57 1.40
3081 3495 2.582728 TACGAACCGCGACCATTAAT 57.417 45.000 8.23 0.00 44.57 1.40
3082 3496 1.283736 ACGAACCGCGACCATTAATC 58.716 50.000 8.23 0.00 44.57 1.75
3083 3497 0.580104 CGAACCGCGACCATTAATCC 59.420 55.000 8.23 0.00 44.57 3.01
3084 3498 0.942252 GAACCGCGACCATTAATCCC 59.058 55.000 8.23 0.00 0.00 3.85
3085 3499 0.812412 AACCGCGACCATTAATCCCG 60.812 55.000 8.23 0.00 0.00 5.14
3086 3500 1.959226 CCGCGACCATTAATCCCGG 60.959 63.158 8.23 0.00 0.00 5.73
3087 3501 1.227438 CGCGACCATTAATCCCGGT 60.227 57.895 0.00 0.00 35.12 5.28
3088 3502 0.812412 CGCGACCATTAATCCCGGTT 60.812 55.000 0.00 0.00 31.63 4.44
3089 3503 0.942252 GCGACCATTAATCCCGGTTC 59.058 55.000 0.00 0.00 31.63 3.62
3090 3504 1.214367 CGACCATTAATCCCGGTTCG 58.786 55.000 0.00 0.98 31.63 3.95
3091 3505 0.942252 GACCATTAATCCCGGTTCGC 59.058 55.000 0.00 0.00 31.63 4.70
3092 3506 0.253610 ACCATTAATCCCGGTTCGCA 59.746 50.000 0.00 0.00 0.00 5.10
3093 3507 1.340211 ACCATTAATCCCGGTTCGCAA 60.340 47.619 0.00 0.00 0.00 4.85
3094 3508 1.746220 CCATTAATCCCGGTTCGCAAA 59.254 47.619 0.00 0.00 0.00 3.68
3095 3509 2.223479 CCATTAATCCCGGTTCGCAAAG 60.223 50.000 0.00 0.00 0.00 2.77
3096 3510 1.455248 TTAATCCCGGTTCGCAAAGG 58.545 50.000 0.00 0.00 0.00 3.11
3097 3511 1.027792 TAATCCCGGTTCGCAAAGGC 61.028 55.000 0.00 0.00 0.00 4.35
3100 3514 3.061848 CCGGTTCGCAAAGGCCAT 61.062 61.111 5.01 0.00 36.38 4.40
3101 3515 2.635443 CCGGTTCGCAAAGGCCATT 61.635 57.895 5.01 0.00 36.38 3.16
3102 3516 1.309499 CCGGTTCGCAAAGGCCATTA 61.309 55.000 5.01 0.00 36.38 1.90
3103 3517 0.523966 CGGTTCGCAAAGGCCATTAA 59.476 50.000 5.01 0.00 36.38 1.40
3104 3518 1.134175 CGGTTCGCAAAGGCCATTAAT 59.866 47.619 5.01 0.00 36.38 1.40
3105 3519 2.416701 CGGTTCGCAAAGGCCATTAATT 60.417 45.455 5.01 0.00 36.38 1.40
3106 3520 3.186909 GGTTCGCAAAGGCCATTAATTC 58.813 45.455 5.01 0.00 36.38 2.17
3107 3521 3.367910 GGTTCGCAAAGGCCATTAATTCA 60.368 43.478 5.01 0.00 36.38 2.57
3108 3522 4.432712 GTTCGCAAAGGCCATTAATTCAT 58.567 39.130 5.01 0.00 36.38 2.57
3109 3523 4.044336 TCGCAAAGGCCATTAATTCATG 57.956 40.909 5.01 0.00 36.38 3.07
3110 3524 3.446873 TCGCAAAGGCCATTAATTCATGT 59.553 39.130 5.01 0.00 36.38 3.21
3111 3525 4.081752 TCGCAAAGGCCATTAATTCATGTT 60.082 37.500 5.01 0.00 36.38 2.71
3112 3526 4.033129 CGCAAAGGCCATTAATTCATGTTG 59.967 41.667 5.01 0.00 36.38 3.33
3113 3527 5.177326 GCAAAGGCCATTAATTCATGTTGA 58.823 37.500 5.01 0.00 0.00 3.18
3114 3528 5.818857 GCAAAGGCCATTAATTCATGTTGAT 59.181 36.000 5.01 0.00 0.00 2.57
3115 3529 6.316890 GCAAAGGCCATTAATTCATGTTGATT 59.683 34.615 5.01 0.00 0.00 2.57
3116 3530 7.677747 GCAAAGGCCATTAATTCATGTTGATTG 60.678 37.037 5.01 4.20 0.00 2.67
3774 4191 0.240145 CTTCCGCACGCTATCCGATA 59.760 55.000 0.00 0.00 41.02 2.92
3798 4215 1.247419 CCGCTCAGAGGTGTGTCTCT 61.247 60.000 0.00 0.00 44.25 3.10
3907 4324 6.420306 TCATGTTTGAATTCACCGACAATTTG 59.580 34.615 7.89 8.96 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.570638 CTTCGATGCCTGCGCCTG 61.571 66.667 4.18 0.00 0.00 4.85
7 8 4.845580 CCTTCGATGCCTGCGCCT 62.846 66.667 4.18 0.00 0.00 5.52
10 11 2.587194 CCTCCTTCGATGCCTGCG 60.587 66.667 0.00 0.00 0.00 5.18
12 13 2.203126 GGCCTCCTTCGATGCCTG 60.203 66.667 0.00 0.00 44.17 4.85
13 14 3.854669 CGGCCTCCTTCGATGCCT 61.855 66.667 0.00 0.00 45.08 4.75
14 15 3.849951 TCGGCCTCCTTCGATGCC 61.850 66.667 0.00 0.00 44.13 4.40
15 16 2.586357 GTCGGCCTCCTTCGATGC 60.586 66.667 0.00 0.00 37.73 3.91
16 17 2.107141 GGTCGGCCTCCTTCGATG 59.893 66.667 0.00 0.00 37.73 3.84
17 18 2.042843 AGGTCGGCCTCCTTCGAT 60.043 61.111 0.35 0.00 42.67 3.59
18 19 3.068691 CAGGTCGGCCTCCTTCGA 61.069 66.667 5.00 0.00 44.97 3.71
19 20 4.821589 GCAGGTCGGCCTCCTTCG 62.822 72.222 5.00 0.00 44.97 3.79
20 21 4.821589 CGCAGGTCGGCCTCCTTC 62.822 72.222 5.00 8.22 44.97 3.46
28 29 4.794439 TCATCACGCGCAGGTCGG 62.794 66.667 5.73 0.00 38.94 4.79
29 30 2.792290 CTTCATCACGCGCAGGTCG 61.792 63.158 5.73 0.00 42.12 4.79
30 31 2.456119 CCTTCATCACGCGCAGGTC 61.456 63.158 5.73 0.00 0.00 3.85
31 32 2.434884 CCTTCATCACGCGCAGGT 60.435 61.111 5.73 0.00 0.00 4.00
32 33 2.125552 TCCTTCATCACGCGCAGG 60.126 61.111 5.73 4.53 0.00 4.85
33 34 2.169789 CCTCCTTCATCACGCGCAG 61.170 63.158 5.73 2.42 0.00 5.18
34 35 2.125552 CCTCCTTCATCACGCGCA 60.126 61.111 5.73 0.00 0.00 6.09
35 36 1.880340 CTCCTCCTTCATCACGCGC 60.880 63.158 5.73 0.00 0.00 6.86
36 37 1.880340 GCTCCTCCTTCATCACGCG 60.880 63.158 3.53 3.53 0.00 6.01
37 38 0.809241 CTGCTCCTCCTTCATCACGC 60.809 60.000 0.00 0.00 0.00 5.34
38 39 0.179089 CCTGCTCCTCCTTCATCACG 60.179 60.000 0.00 0.00 0.00 4.35
39 40 0.463474 GCCTGCTCCTCCTTCATCAC 60.463 60.000 0.00 0.00 0.00 3.06
40 41 1.910722 GCCTGCTCCTCCTTCATCA 59.089 57.895 0.00 0.00 0.00 3.07
41 42 1.227497 CGCCTGCTCCTCCTTCATC 60.227 63.158 0.00 0.00 0.00 2.92
42 43 1.267574 TTCGCCTGCTCCTCCTTCAT 61.268 55.000 0.00 0.00 0.00 2.57
43 44 1.892819 CTTCGCCTGCTCCTCCTTCA 61.893 60.000 0.00 0.00 0.00 3.02
44 45 1.153469 CTTCGCCTGCTCCTCCTTC 60.153 63.158 0.00 0.00 0.00 3.46
45 46 2.985456 CTTCGCCTGCTCCTCCTT 59.015 61.111 0.00 0.00 0.00 3.36
46 47 3.780173 GCTTCGCCTGCTCCTCCT 61.780 66.667 0.00 0.00 0.00 3.69
47 48 3.780173 AGCTTCGCCTGCTCCTCC 61.780 66.667 0.00 0.00 35.67 4.30
62 63 2.100603 CCGAGGTCGACGAAGAGC 59.899 66.667 9.92 0.00 43.02 4.09
63 64 2.100603 GCCGAGGTCGACGAAGAG 59.899 66.667 9.92 0.00 43.02 2.85
64 65 2.359602 AGCCGAGGTCGACGAAGA 60.360 61.111 9.92 0.00 43.02 2.87
65 66 2.100603 GAGCCGAGGTCGACGAAG 59.899 66.667 9.92 2.63 43.02 3.79
66 67 3.437795 GGAGCCGAGGTCGACGAA 61.438 66.667 9.92 0.00 43.02 3.85
78 79 3.519930 GTCGGAGGAGTCGGAGCC 61.520 72.222 0.00 0.00 33.01 4.70
79 80 2.438795 AGTCGGAGGAGTCGGAGC 60.439 66.667 0.00 0.00 33.01 4.70
80 81 1.820481 GGAGTCGGAGGAGTCGGAG 60.820 68.421 0.00 0.00 42.50 4.63
81 82 2.271497 GGAGTCGGAGGAGTCGGA 59.729 66.667 0.00 0.00 42.50 4.55
82 83 3.203412 CGGAGTCGGAGGAGTCGG 61.203 72.222 0.00 0.00 42.50 4.79
83 84 2.125229 TCGGAGTCGGAGGAGTCG 60.125 66.667 0.00 0.00 42.50 4.18
84 85 1.078285 AGTCGGAGTCGGAGGAGTC 60.078 63.158 0.00 0.00 41.13 3.36
85 86 1.377463 CAGTCGGAGTCGGAGGAGT 60.377 63.158 0.00 0.00 36.95 3.85
86 87 0.464735 ATCAGTCGGAGTCGGAGGAG 60.465 60.000 0.00 0.00 36.95 3.69
87 88 0.464013 GATCAGTCGGAGTCGGAGGA 60.464 60.000 0.00 2.89 36.95 3.71
88 89 1.777030 CGATCAGTCGGAGTCGGAGG 61.777 65.000 0.00 0.00 44.00 4.30
89 90 1.644372 CGATCAGTCGGAGTCGGAG 59.356 63.158 0.00 0.00 44.00 4.63
90 91 3.809423 CGATCAGTCGGAGTCGGA 58.191 61.111 0.00 0.00 44.00 4.55
116 117 4.537433 CTCCTGCGGTAGCTGCCC 62.537 72.222 15.92 8.72 45.42 5.36
121 122 4.577246 CGGAGCTCCTGCGGTAGC 62.577 72.222 29.73 1.00 41.42 3.58
126 127 4.504916 CTCACCGGAGCTCCTGCG 62.505 72.222 29.73 18.00 44.57 5.18
134 135 2.154462 ACAAAATTGAGCTCACCGGAG 58.846 47.619 18.03 9.42 44.33 4.63
135 136 2.270352 ACAAAATTGAGCTCACCGGA 57.730 45.000 18.03 1.16 0.00 5.14
136 137 2.664916 CAACAAAATTGAGCTCACCGG 58.335 47.619 18.03 0.00 0.00 5.28
137 138 2.053627 GCAACAAAATTGAGCTCACCG 58.946 47.619 18.03 5.71 32.80 4.94
138 139 3.054878 CTGCAACAAAATTGAGCTCACC 58.945 45.455 18.03 0.00 35.16 4.02
139 140 3.488310 CACTGCAACAAAATTGAGCTCAC 59.512 43.478 18.03 1.70 35.16 3.51
140 141 3.380954 TCACTGCAACAAAATTGAGCTCA 59.619 39.130 13.74 13.74 35.16 4.26
141 142 3.968649 TCACTGCAACAAAATTGAGCTC 58.031 40.909 6.82 6.82 35.16 4.09
142 143 4.304110 CATCACTGCAACAAAATTGAGCT 58.696 39.130 13.35 0.00 35.16 4.09
143 144 4.640805 CATCACTGCAACAAAATTGAGC 57.359 40.909 0.00 4.55 34.86 4.26
164 165 2.031163 CAGGGCCTATGCTACCGC 59.969 66.667 5.28 0.00 37.74 5.68
165 166 1.115930 AGACAGGGCCTATGCTACCG 61.116 60.000 5.28 0.00 37.74 4.02
166 167 1.896465 CTAGACAGGGCCTATGCTACC 59.104 57.143 5.28 0.00 37.74 3.18
167 168 1.273886 GCTAGACAGGGCCTATGCTAC 59.726 57.143 5.28 0.39 37.74 3.58
168 169 1.133167 TGCTAGACAGGGCCTATGCTA 60.133 52.381 5.28 7.37 37.74 3.49
169 170 0.399091 TGCTAGACAGGGCCTATGCT 60.399 55.000 5.28 6.47 37.74 3.79
170 171 0.689623 ATGCTAGACAGGGCCTATGC 59.310 55.000 5.28 7.09 0.00 3.14
171 172 4.029520 AGATATGCTAGACAGGGCCTATG 58.970 47.826 5.28 4.62 0.00 2.23
172 173 4.344938 AGATATGCTAGACAGGGCCTAT 57.655 45.455 5.28 0.00 0.00 2.57
173 174 3.835478 AGATATGCTAGACAGGGCCTA 57.165 47.619 5.28 0.00 0.00 3.93
174 175 2.711895 AGATATGCTAGACAGGGCCT 57.288 50.000 0.00 0.00 0.00 5.19
175 176 3.055747 GGTTAGATATGCTAGACAGGGCC 60.056 52.174 0.00 0.00 0.00 5.80
176 177 3.835395 AGGTTAGATATGCTAGACAGGGC 59.165 47.826 0.00 0.00 0.00 5.19
177 178 5.329399 AGAGGTTAGATATGCTAGACAGGG 58.671 45.833 0.00 0.00 0.00 4.45
178 179 7.613801 ACATAGAGGTTAGATATGCTAGACAGG 59.386 40.741 0.00 0.00 31.44 4.00
179 180 8.574251 ACATAGAGGTTAGATATGCTAGACAG 57.426 38.462 0.00 0.00 31.44 3.51
186 187 9.469807 GCATACATACATAGAGGTTAGATATGC 57.530 37.037 0.00 0.00 34.95 3.14
187 188 9.670719 CGCATACATACATAGAGGTTAGATATG 57.329 37.037 0.00 0.00 33.93 1.78
188 189 8.851145 CCGCATACATACATAGAGGTTAGATAT 58.149 37.037 0.00 0.00 0.00 1.63
189 190 7.201794 GCCGCATACATACATAGAGGTTAGATA 60.202 40.741 0.00 0.00 0.00 1.98
190 191 6.405953 GCCGCATACATACATAGAGGTTAGAT 60.406 42.308 0.00 0.00 0.00 1.98
191 192 5.105877 GCCGCATACATACATAGAGGTTAGA 60.106 44.000 0.00 0.00 0.00 2.10
192 193 5.103000 GCCGCATACATACATAGAGGTTAG 58.897 45.833 0.00 0.00 0.00 2.34
193 194 4.380128 CGCCGCATACATACATAGAGGTTA 60.380 45.833 0.00 0.00 0.00 2.85
194 195 3.614150 CGCCGCATACATACATAGAGGTT 60.614 47.826 0.00 0.00 0.00 3.50
195 196 2.094700 CGCCGCATACATACATAGAGGT 60.095 50.000 0.00 0.00 0.00 3.85
196 197 2.094700 ACGCCGCATACATACATAGAGG 60.095 50.000 0.00 0.00 0.00 3.69
197 198 2.917343 CACGCCGCATACATACATAGAG 59.083 50.000 0.00 0.00 0.00 2.43
198 199 2.295070 ACACGCCGCATACATACATAGA 59.705 45.455 0.00 0.00 0.00 1.98
199 200 2.672714 ACACGCCGCATACATACATAG 58.327 47.619 0.00 0.00 0.00 2.23
200 201 2.804697 ACACGCCGCATACATACATA 57.195 45.000 0.00 0.00 0.00 2.29
201 202 2.804697 TACACGCCGCATACATACAT 57.195 45.000 0.00 0.00 0.00 2.29
202 203 2.034812 TCATACACGCCGCATACATACA 59.965 45.455 0.00 0.00 0.00 2.29
203 204 2.668250 TCATACACGCCGCATACATAC 58.332 47.619 0.00 0.00 0.00 2.39
204 205 3.054166 GTTCATACACGCCGCATACATA 58.946 45.455 0.00 0.00 0.00 2.29
205 206 1.864711 GTTCATACACGCCGCATACAT 59.135 47.619 0.00 0.00 0.00 2.29
206 207 1.134936 AGTTCATACACGCCGCATACA 60.135 47.619 0.00 0.00 0.00 2.29
207 208 1.567504 AGTTCATACACGCCGCATAC 58.432 50.000 0.00 0.00 0.00 2.39
208 209 2.303163 AAGTTCATACACGCCGCATA 57.697 45.000 0.00 0.00 0.00 3.14
209 210 2.303163 TAAGTTCATACACGCCGCAT 57.697 45.000 0.00 0.00 0.00 4.73
210 211 2.303163 ATAAGTTCATACACGCCGCA 57.697 45.000 0.00 0.00 0.00 5.69
211 212 3.350912 CAAATAAGTTCATACACGCCGC 58.649 45.455 0.00 0.00 0.00 6.53
212 213 3.350912 GCAAATAAGTTCATACACGCCG 58.649 45.455 0.00 0.00 0.00 6.46
213 214 3.062909 TCGCAAATAAGTTCATACACGCC 59.937 43.478 0.00 0.00 0.00 5.68
214 215 4.253352 TCGCAAATAAGTTCATACACGC 57.747 40.909 0.00 0.00 0.00 5.34
215 216 6.089920 TCTTCGCAAATAAGTTCATACACG 57.910 37.500 0.00 0.00 0.00 4.49
216 217 7.739295 TCTTCTTCGCAAATAAGTTCATACAC 58.261 34.615 0.00 0.00 0.00 2.90
217 218 7.899178 TCTTCTTCGCAAATAAGTTCATACA 57.101 32.000 0.00 0.00 0.00 2.29
218 219 9.052080 GTTTCTTCTTCGCAAATAAGTTCATAC 57.948 33.333 0.00 0.00 0.00 2.39
219 220 8.779303 TGTTTCTTCTTCGCAAATAAGTTCATA 58.221 29.630 0.00 0.00 0.00 2.15
220 221 7.648142 TGTTTCTTCTTCGCAAATAAGTTCAT 58.352 30.769 0.00 0.00 0.00 2.57
221 222 7.022055 TGTTTCTTCTTCGCAAATAAGTTCA 57.978 32.000 0.00 0.00 0.00 3.18
222 223 7.591426 ACATGTTTCTTCTTCGCAAATAAGTTC 59.409 33.333 0.00 0.00 0.00 3.01
223 224 7.425606 ACATGTTTCTTCTTCGCAAATAAGTT 58.574 30.769 0.00 0.00 0.00 2.66
224 225 6.970484 ACATGTTTCTTCTTCGCAAATAAGT 58.030 32.000 0.00 0.00 0.00 2.24
225 226 9.003112 CATACATGTTTCTTCTTCGCAAATAAG 57.997 33.333 2.30 0.00 0.00 1.73
226 227 7.484641 GCATACATGTTTCTTCTTCGCAAATAA 59.515 33.333 2.30 0.00 0.00 1.40
227 228 6.966632 GCATACATGTTTCTTCTTCGCAAATA 59.033 34.615 2.30 0.00 0.00 1.40
228 229 5.801947 GCATACATGTTTCTTCTTCGCAAAT 59.198 36.000 2.30 0.00 0.00 2.32
229 230 5.153513 GCATACATGTTTCTTCTTCGCAAA 58.846 37.500 2.30 0.00 0.00 3.68
230 231 4.668941 CGCATACATGTTTCTTCTTCGCAA 60.669 41.667 2.30 0.00 0.00 4.85
231 232 3.181521 CGCATACATGTTTCTTCTTCGCA 60.182 43.478 2.30 0.00 0.00 5.10
232 233 3.062099 TCGCATACATGTTTCTTCTTCGC 59.938 43.478 2.30 0.00 0.00 4.70
233 234 4.780324 GCTCGCATACATGTTTCTTCTTCG 60.780 45.833 2.30 0.00 0.00 3.79
234 235 4.582459 GCTCGCATACATGTTTCTTCTTC 58.418 43.478 2.30 0.00 0.00 2.87
235 236 3.062639 CGCTCGCATACATGTTTCTTCTT 59.937 43.478 2.30 0.00 0.00 2.52
236 237 2.604914 CGCTCGCATACATGTTTCTTCT 59.395 45.455 2.30 0.00 0.00 2.85
237 238 2.603110 TCGCTCGCATACATGTTTCTTC 59.397 45.455 2.30 0.00 0.00 2.87
238 239 2.604914 CTCGCTCGCATACATGTTTCTT 59.395 45.455 2.30 0.00 0.00 2.52
239 240 2.196749 CTCGCTCGCATACATGTTTCT 58.803 47.619 2.30 0.00 0.00 2.52
240 241 1.332377 GCTCGCTCGCATACATGTTTC 60.332 52.381 2.30 0.00 0.00 2.78
241 242 0.652592 GCTCGCTCGCATACATGTTT 59.347 50.000 2.30 0.00 0.00 2.83
242 243 0.179100 AGCTCGCTCGCATACATGTT 60.179 50.000 2.30 0.00 0.00 2.71
243 244 0.596083 GAGCTCGCTCGCATACATGT 60.596 55.000 2.69 2.69 33.06 3.21
244 245 1.280886 GGAGCTCGCTCGCATACATG 61.281 60.000 7.83 0.00 43.59 3.21
245 246 1.006805 GGAGCTCGCTCGCATACAT 60.007 57.895 7.83 0.00 43.59 2.29
246 247 2.413351 GGAGCTCGCTCGCATACA 59.587 61.111 7.83 0.00 43.59 2.29
247 248 2.727647 CGGAGCTCGCTCGCATAC 60.728 66.667 7.83 0.00 43.59 2.39
248 249 3.966104 CCGGAGCTCGCTCGCATA 61.966 66.667 7.83 0.00 43.59 3.14
260 261 0.669318 TAAACAACAGCTCGCCGGAG 60.669 55.000 5.05 0.00 43.46 4.63
261 262 0.249953 TTAAACAACAGCTCGCCGGA 60.250 50.000 5.05 0.00 0.00 5.14
262 263 0.589223 TTTAAACAACAGCTCGCCGG 59.411 50.000 0.00 0.00 0.00 6.13
263 264 2.611974 ATTTAAACAACAGCTCGCCG 57.388 45.000 0.00 0.00 0.00 6.46
264 265 4.546570 AGAAATTTAAACAACAGCTCGCC 58.453 39.130 0.00 0.00 0.00 5.54
265 266 5.212194 TGAGAAATTTAAACAACAGCTCGC 58.788 37.500 0.00 0.00 0.00 5.03
266 267 6.183359 GCATGAGAAATTTAAACAACAGCTCG 60.183 38.462 0.00 0.00 0.00 5.03
267 268 6.183359 CGCATGAGAAATTTAAACAACAGCTC 60.183 38.462 0.00 0.00 0.00 4.09
268 269 5.630680 CGCATGAGAAATTTAAACAACAGCT 59.369 36.000 0.00 0.00 0.00 4.24
269 270 5.629020 TCGCATGAGAAATTTAAACAACAGC 59.371 36.000 0.00 0.00 0.00 4.40
270 271 7.621832 TTCGCATGAGAAATTTAAACAACAG 57.378 32.000 9.63 0.00 0.00 3.16
271 272 7.489435 TGTTTCGCATGAGAAATTTAAACAACA 59.511 29.630 24.45 13.84 41.46 3.33
272 273 7.836512 TGTTTCGCATGAGAAATTTAAACAAC 58.163 30.769 24.45 11.68 41.46 3.32
273 274 7.993821 TGTTTCGCATGAGAAATTTAAACAA 57.006 28.000 24.45 0.00 41.46 2.83
274 275 7.489435 TGTTGTTTCGCATGAGAAATTTAAACA 59.511 29.630 24.45 24.33 41.46 2.83
275 276 7.836512 TGTTGTTTCGCATGAGAAATTTAAAC 58.163 30.769 24.45 22.69 41.46 2.01
276 277 7.993821 TGTTGTTTCGCATGAGAAATTTAAA 57.006 28.000 24.45 14.88 41.46 1.52
277 278 8.586570 AATGTTGTTTCGCATGAGAAATTTAA 57.413 26.923 24.45 17.29 41.46 1.52
278 279 8.586570 AAATGTTGTTTCGCATGAGAAATTTA 57.413 26.923 24.45 13.19 41.46 1.40
279 280 7.481275 AAATGTTGTTTCGCATGAGAAATTT 57.519 28.000 24.45 17.57 41.46 1.82
280 281 7.481275 AAAATGTTGTTTCGCATGAGAAATT 57.519 28.000 24.45 13.29 41.46 1.82
281 282 7.481275 AAAAATGTTGTTTCGCATGAGAAAT 57.519 28.000 24.45 8.28 41.46 2.17
282 283 6.900568 AAAAATGTTGTTTCGCATGAGAAA 57.099 29.167 19.10 19.10 37.74 2.52
302 303 6.037281 GCAAACGGACCCTTAAATTTCAAAAA 59.963 34.615 0.00 0.00 0.00 1.94
303 304 5.524281 GCAAACGGACCCTTAAATTTCAAAA 59.476 36.000 0.00 0.00 0.00 2.44
304 305 5.051153 GCAAACGGACCCTTAAATTTCAAA 58.949 37.500 0.00 0.00 0.00 2.69
305 306 4.623002 GCAAACGGACCCTTAAATTTCAA 58.377 39.130 0.00 0.00 0.00 2.69
306 307 3.304794 CGCAAACGGACCCTTAAATTTCA 60.305 43.478 0.00 0.00 34.97 2.69
307 308 3.239254 CGCAAACGGACCCTTAAATTTC 58.761 45.455 0.00 0.00 34.97 2.17
308 309 3.291809 CGCAAACGGACCCTTAAATTT 57.708 42.857 0.00 0.00 34.97 1.82
321 322 1.136336 GCAGACTAGAAACCGCAAACG 60.136 52.381 0.00 0.00 39.67 3.60
322 323 1.197036 GGCAGACTAGAAACCGCAAAC 59.803 52.381 0.00 0.00 0.00 2.93
323 324 1.519408 GGCAGACTAGAAACCGCAAA 58.481 50.000 0.00 0.00 0.00 3.68
324 325 0.669318 CGGCAGACTAGAAACCGCAA 60.669 55.000 0.00 0.00 37.05 4.85
325 326 1.080093 CGGCAGACTAGAAACCGCA 60.080 57.895 0.00 0.00 37.05 5.69
326 327 3.782042 CGGCAGACTAGAAACCGC 58.218 61.111 0.00 0.00 37.05 5.68
327 328 1.810030 GGCGGCAGACTAGAAACCG 60.810 63.158 3.07 5.32 46.50 4.44
328 329 1.810030 CGGCGGCAGACTAGAAACC 60.810 63.158 10.53 0.00 0.00 3.27
329 330 2.453638 GCGGCGGCAGACTAGAAAC 61.454 63.158 9.78 0.00 39.62 2.78
330 331 2.125673 GCGGCGGCAGACTAGAAA 60.126 61.111 9.78 0.00 39.62 2.52
331 332 3.378602 TGCGGCGGCAGACTAGAA 61.379 61.111 15.76 0.00 46.21 2.10
340 341 3.181290 GCTGAAAATTGCGGCGGC 61.181 61.111 9.78 9.68 40.52 6.53
341 342 1.653094 TAGGCTGAAAATTGCGGCGG 61.653 55.000 9.78 0.00 38.52 6.13
342 343 0.523335 GTAGGCTGAAAATTGCGGCG 60.523 55.000 0.51 0.51 38.52 6.46
343 344 0.525761 TGTAGGCTGAAAATTGCGGC 59.474 50.000 0.00 0.00 36.92 6.53
344 345 4.630894 TTATGTAGGCTGAAAATTGCGG 57.369 40.909 0.00 0.00 0.00 5.69
345 346 4.905866 CGATTATGTAGGCTGAAAATTGCG 59.094 41.667 0.00 0.00 0.00 4.85
346 347 4.676924 GCGATTATGTAGGCTGAAAATTGC 59.323 41.667 0.00 3.92 0.00 3.56
347 348 5.215160 GGCGATTATGTAGGCTGAAAATTG 58.785 41.667 0.00 0.00 0.00 2.32
348 349 4.278419 GGGCGATTATGTAGGCTGAAAATT 59.722 41.667 0.00 0.00 0.00 1.82
349 350 3.821033 GGGCGATTATGTAGGCTGAAAAT 59.179 43.478 0.00 0.00 0.00 1.82
350 351 3.211045 GGGCGATTATGTAGGCTGAAAA 58.789 45.455 0.00 0.00 0.00 2.29
351 352 2.486548 GGGGCGATTATGTAGGCTGAAA 60.487 50.000 0.00 0.00 0.00 2.69
352 353 1.071699 GGGGCGATTATGTAGGCTGAA 59.928 52.381 0.00 0.00 0.00 3.02
353 354 0.685097 GGGGCGATTATGTAGGCTGA 59.315 55.000 0.00 0.00 0.00 4.26
354 355 0.321653 GGGGGCGATTATGTAGGCTG 60.322 60.000 0.00 0.00 0.00 4.85
355 356 1.827399 CGGGGGCGATTATGTAGGCT 61.827 60.000 0.00 0.00 0.00 4.58
356 357 1.375523 CGGGGGCGATTATGTAGGC 60.376 63.158 0.00 0.00 0.00 3.93
357 358 0.320421 CACGGGGGCGATTATGTAGG 60.320 60.000 0.00 0.00 0.00 3.18
358 359 0.949105 GCACGGGGGCGATTATGTAG 60.949 60.000 0.00 0.00 0.00 2.74
359 360 1.070105 GCACGGGGGCGATTATGTA 59.930 57.895 0.00 0.00 0.00 2.29
360 361 2.203153 GCACGGGGGCGATTATGT 60.203 61.111 0.00 0.00 0.00 2.29
369 370 3.242897 TTTGTAGGTCGCACGGGGG 62.243 63.158 0.00 0.00 0.00 5.40
370 371 2.030958 GTTTGTAGGTCGCACGGGG 61.031 63.158 0.00 0.00 0.00 5.73
371 372 1.301087 TGTTTGTAGGTCGCACGGG 60.301 57.895 0.00 0.00 0.00 5.28
372 373 0.876777 TGTGTTTGTAGGTCGCACGG 60.877 55.000 0.00 0.00 33.23 4.94
373 374 1.144969 ATGTGTTTGTAGGTCGCACG 58.855 50.000 0.00 0.00 33.23 5.34
374 375 3.619233 AAATGTGTTTGTAGGTCGCAC 57.381 42.857 0.00 0.00 0.00 5.34
375 376 4.318903 CGTAAAATGTGTTTGTAGGTCGCA 60.319 41.667 0.00 0.00 0.00 5.10
376 377 4.145997 CGTAAAATGTGTTTGTAGGTCGC 58.854 43.478 0.00 0.00 0.00 5.19
377 378 4.377635 CCCGTAAAATGTGTTTGTAGGTCG 60.378 45.833 0.00 0.00 0.00 4.79
378 379 4.516321 ACCCGTAAAATGTGTTTGTAGGTC 59.484 41.667 0.00 0.00 0.00 3.85
379 380 4.463070 ACCCGTAAAATGTGTTTGTAGGT 58.537 39.130 0.00 0.00 0.00 3.08
380 381 4.377635 CGACCCGTAAAATGTGTTTGTAGG 60.378 45.833 0.00 0.00 0.00 3.18
381 382 4.377635 CCGACCCGTAAAATGTGTTTGTAG 60.378 45.833 0.00 0.00 0.00 2.74
382 383 3.497640 CCGACCCGTAAAATGTGTTTGTA 59.502 43.478 0.00 0.00 0.00 2.41
383 384 2.291190 CCGACCCGTAAAATGTGTTTGT 59.709 45.455 0.00 0.00 0.00 2.83
384 385 2.918968 GCCGACCCGTAAAATGTGTTTG 60.919 50.000 0.00 0.00 0.00 2.93
385 386 1.267533 GCCGACCCGTAAAATGTGTTT 59.732 47.619 0.00 0.00 0.00 2.83
386 387 0.876399 GCCGACCCGTAAAATGTGTT 59.124 50.000 0.00 0.00 0.00 3.32
387 388 0.250381 TGCCGACCCGTAAAATGTGT 60.250 50.000 0.00 0.00 0.00 3.72
388 389 0.875728 TTGCCGACCCGTAAAATGTG 59.124 50.000 0.00 0.00 0.00 3.21
389 390 1.606903 TTTGCCGACCCGTAAAATGT 58.393 45.000 0.00 0.00 0.00 2.71
390 391 2.708386 TTTTGCCGACCCGTAAAATG 57.292 45.000 0.00 0.00 0.00 2.32
391 392 2.672760 GCATTTTGCCGACCCGTAAAAT 60.673 45.455 0.00 0.00 37.42 1.82
392 393 1.336056 GCATTTTGCCGACCCGTAAAA 60.336 47.619 0.00 0.00 37.42 1.52
393 394 0.241481 GCATTTTGCCGACCCGTAAA 59.759 50.000 0.00 0.00 37.42 2.01
394 395 0.606944 AGCATTTTGCCGACCCGTAA 60.607 50.000 0.00 0.00 46.52 3.18
395 396 0.249676 TAGCATTTTGCCGACCCGTA 59.750 50.000 0.00 0.00 46.52 4.02
396 397 1.003112 TAGCATTTTGCCGACCCGT 60.003 52.632 0.00 0.00 46.52 5.28
397 398 0.742990 TCTAGCATTTTGCCGACCCG 60.743 55.000 0.00 0.00 46.52 5.28
398 399 1.017387 CTCTAGCATTTTGCCGACCC 58.983 55.000 0.00 0.00 46.52 4.46
399 400 1.739067 ACTCTAGCATTTTGCCGACC 58.261 50.000 0.00 0.00 46.52 4.79
400 401 2.729156 GCAACTCTAGCATTTTGCCGAC 60.729 50.000 0.00 0.00 46.52 4.79
401 402 1.468520 GCAACTCTAGCATTTTGCCGA 59.531 47.619 0.00 0.00 46.52 5.54
402 403 1.470098 AGCAACTCTAGCATTTTGCCG 59.530 47.619 11.49 0.00 46.52 5.69
403 404 2.751806 AGAGCAACTCTAGCATTTTGCC 59.248 45.455 11.49 6.10 44.46 4.52
404 405 4.431661 AAGAGCAACTCTAGCATTTTGC 57.568 40.909 0.00 8.53 40.28 3.68
405 406 5.877012 TCCTAAGAGCAACTCTAGCATTTTG 59.123 40.000 0.00 0.00 40.28 2.44
406 407 6.054860 TCCTAAGAGCAACTCTAGCATTTT 57.945 37.500 0.00 0.00 40.28 1.82
407 408 5.669477 CTCCTAAGAGCAACTCTAGCATTT 58.331 41.667 0.00 0.00 40.28 2.32
408 409 5.275067 CTCCTAAGAGCAACTCTAGCATT 57.725 43.478 0.00 0.00 40.28 3.56
409 410 4.935352 CTCCTAAGAGCAACTCTAGCAT 57.065 45.455 0.00 0.00 40.28 3.79
421 422 1.460273 GCTCCCTCCGCTCCTAAGAG 61.460 65.000 0.00 0.00 43.57 2.85
422 423 1.455959 GCTCCCTCCGCTCCTAAGA 60.456 63.158 0.00 0.00 0.00 2.10
423 424 1.758514 TGCTCCCTCCGCTCCTAAG 60.759 63.158 0.00 0.00 0.00 2.18
424 425 2.058595 GTGCTCCCTCCGCTCCTAA 61.059 63.158 0.00 0.00 0.00 2.69
425 426 1.642513 TAGTGCTCCCTCCGCTCCTA 61.643 60.000 0.00 0.00 0.00 2.94
426 427 2.305314 ATAGTGCTCCCTCCGCTCCT 62.305 60.000 0.00 0.00 0.00 3.69
427 428 1.403687 AATAGTGCTCCCTCCGCTCC 61.404 60.000 0.00 0.00 0.00 4.70
428 429 1.329256 TAATAGTGCTCCCTCCGCTC 58.671 55.000 0.00 0.00 0.00 5.03
429 430 2.016905 ATAATAGTGCTCCCTCCGCT 57.983 50.000 0.00 0.00 0.00 5.52
430 431 2.841442 AATAATAGTGCTCCCTCCGC 57.159 50.000 0.00 0.00 0.00 5.54
431 432 5.105837 GGTAGTAATAATAGTGCTCCCTCCG 60.106 48.000 0.00 0.00 0.00 4.63
432 433 5.187381 GGGTAGTAATAATAGTGCTCCCTCC 59.813 48.000 6.26 0.00 0.00 4.30
433 434 5.778750 TGGGTAGTAATAATAGTGCTCCCTC 59.221 44.000 11.79 0.00 33.15 4.30
434 435 5.543020 GTGGGTAGTAATAATAGTGCTCCCT 59.457 44.000 11.79 0.00 33.15 4.20
435 436 5.279859 GGTGGGTAGTAATAATAGTGCTCCC 60.280 48.000 6.46 6.46 0.00 4.30
436 437 5.306160 TGGTGGGTAGTAATAATAGTGCTCC 59.694 44.000 0.00 0.00 0.00 4.70
437 438 6.415206 TGGTGGGTAGTAATAATAGTGCTC 57.585 41.667 0.00 0.00 0.00 4.26
438 439 6.408891 GGTTGGTGGGTAGTAATAATAGTGCT 60.409 42.308 0.00 0.00 0.00 4.40
439 440 5.761726 GGTTGGTGGGTAGTAATAATAGTGC 59.238 44.000 0.00 0.00 0.00 4.40
440 441 6.126710 TGGGTTGGTGGGTAGTAATAATAGTG 60.127 42.308 0.00 0.00 0.00 2.74
441 442 5.971881 TGGGTTGGTGGGTAGTAATAATAGT 59.028 40.000 0.00 0.00 0.00 2.12
598 615 1.557269 ATTCCTCCACGCCTCTTGCT 61.557 55.000 0.00 0.00 38.05 3.91
733 788 2.286425 ACAGGGTGGGGATGAGGG 60.286 66.667 0.00 0.00 0.00 4.30
757 813 3.626924 GGTGGTCAGGTCAGCGGT 61.627 66.667 0.00 0.00 0.00 5.68
862 927 3.874543 CGTGGCCAGCTTATTTATACACA 59.125 43.478 5.11 0.00 0.00 3.72
863 928 3.303791 GCGTGGCCAGCTTATTTATACAC 60.304 47.826 5.11 0.00 0.00 2.90
913 978 1.892819 CGAGATGGTGGTGACTGGCT 61.893 60.000 0.00 0.00 0.00 4.75
945 1010 2.944075 CTGAAGCCAGCAAAGCTCT 58.056 52.632 0.00 0.00 40.49 4.09
1033 1125 1.982938 GCTGTCCGTCCAGTACCCT 60.983 63.158 0.00 0.00 34.84 4.34
1243 1406 3.033764 GTTGGCGCAGACGAACGA 61.034 61.111 10.83 0.00 41.59 3.85
1295 1458 2.504244 GCTCGACCTTCGACACGG 60.504 66.667 0.00 0.00 44.82 4.94
1434 1642 3.296836 TCAAACCGCCGGTCTCGA 61.297 61.111 10.32 3.35 39.00 4.04
1665 1873 7.733402 AGTACGTAAACTTTTTGCTGGAATA 57.267 32.000 0.00 0.00 0.00 1.75
1685 1946 3.000727 CACAAAGATGTCCCCGAAGTAC 58.999 50.000 0.00 0.00 37.82 2.73
1686 1947 2.635915 ACACAAAGATGTCCCCGAAGTA 59.364 45.455 0.00 0.00 37.82 2.24
1687 1948 1.420138 ACACAAAGATGTCCCCGAAGT 59.580 47.619 0.00 0.00 37.82 3.01
1688 1949 2.076863 GACACAAAGATGTCCCCGAAG 58.923 52.381 0.00 0.00 42.74 3.79
1690 1951 3.927555 GACACAAAGATGTCCCCGA 57.072 52.632 0.00 0.00 42.74 5.14
2111 2504 2.440796 CACAGGATGGGCGCCATT 60.441 61.111 30.85 15.33 45.26 3.16
2201 2594 1.145377 AACGACAGCGAGGTGGTTT 59.855 52.632 7.23 0.00 36.49 3.27
2306 2699 3.470567 GTGACGAAGAGCACGGCG 61.471 66.667 4.80 4.80 42.10 6.46
2327 2720 2.520536 GGTGGGGAGCCGCTGATAT 61.521 63.158 0.00 0.00 0.00 1.63
2561 2954 2.571757 GCCACACTCGTCATCGGA 59.428 61.111 0.00 0.00 37.69 4.55
2887 3286 0.251653 ACTGCCCCTCGTCTTGTAGA 60.252 55.000 0.00 0.00 0.00 2.59
2900 3299 2.292794 TAGATTCGCCGACACTGCCC 62.293 60.000 0.00 0.00 0.00 5.36
2915 3314 0.035056 GCCCTTGTGCCACAGTAGAT 60.035 55.000 0.00 0.00 0.00 1.98
2930 3329 1.302832 CTTTGCTCTTCCGTGCCCT 60.303 57.895 0.00 0.00 0.00 5.19
2996 3402 6.845302 ACACTATACAAGCACAATCAACATG 58.155 36.000 0.00 0.00 0.00 3.21
3063 3477 1.283736 GATTAATGGTCGCGGTTCGT 58.716 50.000 6.13 0.00 39.67 3.85
3064 3478 0.580104 GGATTAATGGTCGCGGTTCG 59.420 55.000 6.13 0.00 40.15 3.95
3065 3479 0.942252 GGGATTAATGGTCGCGGTTC 59.058 55.000 6.13 0.00 0.00 3.62
3066 3480 0.812412 CGGGATTAATGGTCGCGGTT 60.812 55.000 6.13 0.00 44.93 4.44
3067 3481 1.227438 CGGGATTAATGGTCGCGGT 60.227 57.895 6.13 0.00 44.93 5.68
3068 3482 3.637714 CGGGATTAATGGTCGCGG 58.362 61.111 6.13 0.00 44.93 6.46
3070 3484 0.942252 GAACCGGGATTAATGGTCGC 59.058 55.000 6.32 0.00 34.11 5.19
3071 3485 1.214367 CGAACCGGGATTAATGGTCG 58.786 55.000 6.32 0.00 34.11 4.79
3072 3486 0.942252 GCGAACCGGGATTAATGGTC 59.058 55.000 6.32 0.00 34.11 4.02
3073 3487 0.253610 TGCGAACCGGGATTAATGGT 59.746 50.000 6.32 0.00 37.68 3.55
3074 3488 1.384525 TTGCGAACCGGGATTAATGG 58.615 50.000 6.32 0.00 0.00 3.16
3075 3489 2.223479 CCTTTGCGAACCGGGATTAATG 60.223 50.000 6.32 0.00 0.00 1.90
3076 3490 2.021457 CCTTTGCGAACCGGGATTAAT 58.979 47.619 6.32 0.00 0.00 1.40
3077 3491 1.455248 CCTTTGCGAACCGGGATTAA 58.545 50.000 6.32 0.00 0.00 1.40
3078 3492 1.027792 GCCTTTGCGAACCGGGATTA 61.028 55.000 6.32 0.00 0.00 1.75
3079 3493 2.340328 GCCTTTGCGAACCGGGATT 61.340 57.895 6.32 0.00 0.00 3.01
3080 3494 2.750237 GCCTTTGCGAACCGGGAT 60.750 61.111 6.32 0.00 0.00 3.85
3083 3497 1.309499 TAATGGCCTTTGCGAACCGG 61.309 55.000 13.96 0.00 38.85 5.28
3084 3498 0.523966 TTAATGGCCTTTGCGAACCG 59.476 50.000 13.96 0.00 38.85 4.44
3085 3499 2.959507 ATTAATGGCCTTTGCGAACC 57.040 45.000 13.96 0.00 38.85 3.62
3086 3500 3.843999 TGAATTAATGGCCTTTGCGAAC 58.156 40.909 13.96 3.09 38.85 3.95
3087 3501 4.081752 ACATGAATTAATGGCCTTTGCGAA 60.082 37.500 13.96 1.05 38.85 4.70
3088 3502 3.446873 ACATGAATTAATGGCCTTTGCGA 59.553 39.130 13.96 0.85 38.85 5.10
3089 3503 3.784338 ACATGAATTAATGGCCTTTGCG 58.216 40.909 13.96 0.00 38.85 4.85
3090 3504 5.177326 TCAACATGAATTAATGGCCTTTGC 58.823 37.500 13.96 2.06 31.46 3.68
3091 3505 7.334921 ACAATCAACATGAATTAATGGCCTTTG 59.665 33.333 13.96 8.05 31.46 2.77
3092 3506 7.334921 CACAATCAACATGAATTAATGGCCTTT 59.665 33.333 3.32 6.72 31.46 3.11
3093 3507 6.819649 CACAATCAACATGAATTAATGGCCTT 59.180 34.615 3.32 0.00 31.46 4.35
3094 3508 6.342906 CACAATCAACATGAATTAATGGCCT 58.657 36.000 3.32 0.00 31.46 5.19
3095 3509 5.524646 CCACAATCAACATGAATTAATGGCC 59.475 40.000 7.72 0.00 31.46 5.36
3096 3510 6.108015 ACCACAATCAACATGAATTAATGGC 58.892 36.000 7.72 0.00 31.46 4.40
3097 3511 8.685427 TCTACCACAATCAACATGAATTAATGG 58.315 33.333 7.72 9.61 31.46 3.16
3102 3516 9.426837 CATTTTCTACCACAATCAACATGAATT 57.573 29.630 0.00 0.00 0.00 2.17
3103 3517 8.036575 CCATTTTCTACCACAATCAACATGAAT 58.963 33.333 0.00 0.00 0.00 2.57
3104 3518 7.377398 CCATTTTCTACCACAATCAACATGAA 58.623 34.615 0.00 0.00 0.00 2.57
3105 3519 6.071447 CCCATTTTCTACCACAATCAACATGA 60.071 38.462 0.00 0.00 0.00 3.07
3106 3520 6.101332 CCCATTTTCTACCACAATCAACATG 58.899 40.000 0.00 0.00 0.00 3.21
3107 3521 5.337491 GCCCATTTTCTACCACAATCAACAT 60.337 40.000 0.00 0.00 0.00 2.71
3108 3522 4.021544 GCCCATTTTCTACCACAATCAACA 60.022 41.667 0.00 0.00 0.00 3.33
3109 3523 4.494484 GCCCATTTTCTACCACAATCAAC 58.506 43.478 0.00 0.00 0.00 3.18
3110 3524 3.513515 GGCCCATTTTCTACCACAATCAA 59.486 43.478 0.00 0.00 0.00 2.57
3111 3525 3.096092 GGCCCATTTTCTACCACAATCA 58.904 45.455 0.00 0.00 0.00 2.57
3112 3526 3.365472 AGGCCCATTTTCTACCACAATC 58.635 45.455 0.00 0.00 0.00 2.67
3113 3527 3.473113 AGGCCCATTTTCTACCACAAT 57.527 42.857 0.00 0.00 0.00 2.71
3114 3528 2.990740 AGGCCCATTTTCTACCACAA 57.009 45.000 0.00 0.00 0.00 3.33
3115 3529 2.990740 AAGGCCCATTTTCTACCACA 57.009 45.000 0.00 0.00 0.00 4.17
3116 3530 4.341487 ACTAAAGGCCCATTTTCTACCAC 58.659 43.478 0.00 0.00 0.00 4.16
3298 3715 0.611618 TAGTCCCGGTTAGCCACGAA 60.612 55.000 0.00 0.00 34.09 3.85
3713 4130 0.818296 GGCTTAGTCCAGAAGCTCGA 59.182 55.000 7.26 0.00 46.93 4.04
3798 4215 7.047891 GGATACTATGTTTGTGAGAACATCCA 58.952 38.462 6.52 0.00 44.65 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.