Multiple sequence alignment - TraesCS1D01G432700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G432700 chr1D 100.000 4117 0 0 1 4117 482273564 482277680 0.000000e+00 7603.0
1 TraesCS1D01G432700 chr1D 81.127 1526 248 28 1353 2849 482323801 482325315 0.000000e+00 1186.0
2 TraesCS1D01G432700 chr1D 80.746 1501 265 18 1366 2849 482517136 482515643 0.000000e+00 1149.0
3 TraesCS1D01G432700 chr1D 94.444 54 3 0 3145 3198 482276658 482276711 2.640000e-12 84.2
4 TraesCS1D01G432700 chr1D 94.444 54 3 0 3095 3148 482276708 482276761 2.640000e-12 84.2
5 TraesCS1D01G432700 chr1B 91.196 2851 190 26 562 3391 670830446 670833256 0.000000e+00 3818.0
6 TraesCS1D01G432700 chr1B 80.747 1527 252 27 1353 2849 670899840 670901354 0.000000e+00 1153.0
7 TraesCS1D01G432700 chr1B 79.959 1447 248 27 1437 2849 670957005 670958443 0.000000e+00 1027.0
8 TraesCS1D01G432700 chr1B 90.364 550 40 9 21 569 670821787 670822324 0.000000e+00 710.0
9 TraesCS1D01G432700 chr1B 91.899 358 27 2 466 822 670820328 670820684 2.210000e-137 499.0
10 TraesCS1D01G432700 chr1B 89.937 159 14 2 21 177 670819458 670819616 1.940000e-48 204.0
11 TraesCS1D01G432700 chr1A 92.195 1704 114 10 1705 3405 579023824 579025511 0.000000e+00 2392.0
12 TraesCS1D01G432700 chr1A 80.347 1440 249 21 1437 2849 579575778 579574346 0.000000e+00 1061.0
13 TraesCS1D01G432700 chr1A 92.346 601 41 2 1073 1673 579023090 579023685 0.000000e+00 850.0
14 TraesCS1D01G432700 chr1A 91.680 613 35 7 380 987 579022365 579022966 0.000000e+00 835.0
15 TraesCS1D01G432700 chrUn 80.664 1505 252 25 1366 2849 1823544 1825030 0.000000e+00 1131.0
16 TraesCS1D01G432700 chrUn 82.847 1131 192 2 1720 2849 1944829 1945958 0.000000e+00 1013.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G432700 chr1D 482273564 482277680 4116 False 2590.466667 7603 96.296000 1 4117 3 chr1D.!!$F2 4116
1 TraesCS1D01G432700 chr1D 482323801 482325315 1514 False 1186.000000 1186 81.127000 1353 2849 1 chr1D.!!$F1 1496
2 TraesCS1D01G432700 chr1D 482515643 482517136 1493 True 1149.000000 1149 80.746000 1366 2849 1 chr1D.!!$R1 1483
3 TraesCS1D01G432700 chr1B 670830446 670833256 2810 False 3818.000000 3818 91.196000 562 3391 1 chr1B.!!$F1 2829
4 TraesCS1D01G432700 chr1B 670899840 670901354 1514 False 1153.000000 1153 80.747000 1353 2849 1 chr1B.!!$F2 1496
5 TraesCS1D01G432700 chr1B 670957005 670958443 1438 False 1027.000000 1027 79.959000 1437 2849 1 chr1B.!!$F3 1412
6 TraesCS1D01G432700 chr1B 670819458 670822324 2866 False 471.000000 710 90.733333 21 822 3 chr1B.!!$F4 801
7 TraesCS1D01G432700 chr1A 579022365 579025511 3146 False 1359.000000 2392 92.073667 380 3405 3 chr1A.!!$F1 3025
8 TraesCS1D01G432700 chr1A 579574346 579575778 1432 True 1061.000000 1061 80.347000 1437 2849 1 chr1A.!!$R1 1412
9 TraesCS1D01G432700 chrUn 1823544 1825030 1486 False 1131.000000 1131 80.664000 1366 2849 1 chrUn.!!$F1 1483
10 TraesCS1D01G432700 chrUn 1944829 1945958 1129 False 1013.000000 1013 82.847000 1720 2849 1 chrUn.!!$F2 1129

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
534 964 1.561542 ACCCCCACTGAATCTAGCAAG 59.438 52.381 0.00 0.0 0.00 4.01 F
1088 1571 0.540923 AGAGGAGTTCAGCATCAGCC 59.459 55.000 0.00 0.0 43.56 4.85 F
2342 2970 1.077429 GAGGCTCCCCACCAATGTC 60.077 63.158 2.15 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1814 2442 1.001020 CCACAACATGGCCTGGCTA 60.001 57.895 19.68 13.97 43.24 3.93 R
2732 4210 0.904865 ACTTCCTCCTCGTGATGGCA 60.905 55.000 0.00 0.00 0.00 4.92 R
4058 5575 0.025513 GCATCGCAACATCTGTCGTC 59.974 55.000 0.00 0.00 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 4.987912 CCAATGTCAACGTAAAATGCCTTT 59.012 37.500 0.00 0.00 0.00 3.11
88 89 4.902443 TGTCAACGTAAAATGCCTTTGA 57.098 36.364 0.00 0.00 0.00 2.69
93 94 6.251376 GTCAACGTAAAATGCCTTTGATCATC 59.749 38.462 0.00 0.00 0.00 2.92
96 97 6.866480 ACGTAAAATGCCTTTGATCATCAAT 58.134 32.000 0.00 0.00 36.11 2.57
110 111 8.638629 TTGATCATCAATATGCATGGATTACA 57.361 30.769 10.16 6.80 30.26 2.41
172 173 6.985188 TGTTTATAAGATGAGTTGGACAGC 57.015 37.500 0.00 0.00 0.00 4.40
198 416 7.259088 AGAGTGGAGGTATGTTTGAATTAGT 57.741 36.000 0.00 0.00 0.00 2.24
200 418 6.779860 AGTGGAGGTATGTTTGAATTAGTGT 58.220 36.000 0.00 0.00 0.00 3.55
214 432 6.220930 TGAATTAGTGTTCACTAGCGAAGTT 58.779 36.000 11.63 0.00 35.76 2.66
219 437 1.719780 GTTCACTAGCGAAGTTCACGG 59.280 52.381 3.32 0.00 35.76 4.94
225 443 3.016474 GCGAAGTTCACGGCTGCTC 62.016 63.158 3.32 0.00 0.00 4.26
239 457 1.668047 GCTGCTCAAAGTGGCAATGAC 60.668 52.381 0.00 0.00 38.02 3.06
260 478 8.824159 ATGACACTGCATAGATGTCTTAATAC 57.176 34.615 16.68 0.00 42.65 1.89
269 487 7.095060 GCATAGATGTCTTAATACATGTGTGGG 60.095 40.741 20.82 8.33 40.40 4.61
273 491 6.061022 TGTCTTAATACATGTGTGGGTCAT 57.939 37.500 9.11 0.00 0.00 3.06
309 527 4.943093 ACATGCATGTATTCAGCACTAACA 59.057 37.500 30.50 0.00 41.60 2.41
534 964 1.561542 ACCCCCACTGAATCTAGCAAG 59.438 52.381 0.00 0.00 0.00 4.01
585 1015 8.477419 TGATCACAGTACATACATCCATCTTA 57.523 34.615 0.00 0.00 0.00 2.10
657 1087 6.420913 ACTATTATGAGCGGTTAACCAGAT 57.579 37.500 24.14 15.16 35.14 2.90
702 1133 3.555547 GGTCAAACAAGCCACACATTTTC 59.444 43.478 0.00 0.00 0.00 2.29
710 1141 4.942761 AGCCACACATTTTCATGAAACT 57.057 36.364 20.35 12.66 34.11 2.66
711 1142 6.183360 ACAAGCCACACATTTTCATGAAACTA 60.183 34.615 20.35 7.69 34.11 2.24
768 1201 4.844884 AGGCTAAACACCAAATACTCCTC 58.155 43.478 0.00 0.00 0.00 3.71
769 1202 4.536489 AGGCTAAACACCAAATACTCCTCT 59.464 41.667 0.00 0.00 0.00 3.69
770 1203 5.014228 AGGCTAAACACCAAATACTCCTCTT 59.986 40.000 0.00 0.00 0.00 2.85
776 1209 3.826157 CACCAAATACTCCTCTTGCCAAA 59.174 43.478 0.00 0.00 0.00 3.28
947 1382 1.890041 TTGCTGGTCGTTTGTCCCG 60.890 57.895 0.00 0.00 0.00 5.14
987 1422 3.119245 CGTATATATAAGGTGGCCACGCT 60.119 47.826 29.08 23.03 0.00 5.07
988 1423 4.619863 CGTATATATAAGGTGGCCACGCTT 60.620 45.833 30.17 30.17 0.00 4.68
1036 1482 0.940519 CGTGTTGCCAACATTGCCTG 60.941 55.000 14.22 0.00 44.35 4.85
1054 1511 2.126307 CGTCTCCAGCAGTCCACG 60.126 66.667 0.00 0.00 0.00 4.94
1088 1571 0.540923 AGAGGAGTTCAGCATCAGCC 59.459 55.000 0.00 0.00 43.56 4.85
1095 1578 2.092968 AGTTCAGCATCAGCCGGATAAA 60.093 45.455 5.05 0.00 43.56 1.40
1097 1580 2.564771 TCAGCATCAGCCGGATAAAAG 58.435 47.619 5.05 0.00 43.56 2.27
1098 1581 2.170397 TCAGCATCAGCCGGATAAAAGA 59.830 45.455 5.05 0.00 43.56 2.52
1156 1639 2.049433 ACGTTTCGACGGAGGCTG 60.049 61.111 0.00 0.00 37.45 4.85
1393 1879 2.583441 CCGTCCTGGGTGCTCAGAA 61.583 63.158 0.00 0.00 36.93 3.02
1578 2079 3.728268 CGTCCACTAACTCTGATGACGAC 60.728 52.174 0.00 0.00 44.86 4.34
1641 2142 2.507324 GAGCTCGACACCCTTCGC 60.507 66.667 0.00 0.00 38.95 4.70
1645 2146 1.210931 CTCGACACCCTTCGCGTAA 59.789 57.895 5.77 0.00 38.95 3.18
1665 2166 2.726821 AGCACCACCTAACATCCATTG 58.273 47.619 0.00 0.00 0.00 2.82
1674 2189 6.702723 CCACCTAACATCCATTGCAAAATATG 59.297 38.462 1.71 9.76 0.00 1.78
1687 2297 6.909550 TGCAAAATATGTACTTTTCCCTGT 57.090 33.333 0.00 0.00 0.00 4.00
1814 2442 1.224592 GATGTGCCTCGGGGTGAAT 59.775 57.895 1.62 0.00 34.45 2.57
1916 2544 4.988716 TGGTGGGTCTCCGTCGCT 62.989 66.667 0.00 0.00 35.24 4.93
1923 2551 2.033602 TCTCCGTCGCTCTCACCA 59.966 61.111 0.00 0.00 0.00 4.17
1943 2571 2.343484 TCATCGTCTCCGTCACCTAT 57.657 50.000 0.00 0.00 35.01 2.57
2106 2734 3.609644 CGTCGTCTATAACCTCCTCATGC 60.610 52.174 0.00 0.00 0.00 4.06
2204 2832 2.280524 CCGTCGAACCACCTTGCA 60.281 61.111 0.00 0.00 0.00 4.08
2315 2943 3.112709 GGCGTGCTCTTCGTCACC 61.113 66.667 0.00 0.00 32.96 4.02
2342 2970 1.077429 GAGGCTCCCCACCAATGTC 60.077 63.158 2.15 0.00 0.00 3.06
2732 4210 0.695924 TCCCCAACGATGTGTCCATT 59.304 50.000 0.00 0.00 0.00 3.16
2751 4229 0.904865 TGCCATCACGAGGAGGAAGT 60.905 55.000 0.00 0.00 0.00 3.01
2838 4316 3.088532 TCCATTCCCAATTTCAGTTCCG 58.911 45.455 0.00 0.00 0.00 4.30
2856 4334 1.228245 GGTTCCAAGCACTCCAGCA 60.228 57.895 0.00 0.00 36.85 4.41
2920 4398 1.138047 GCGCACATGCATGAAAGAGC 61.138 55.000 32.75 26.35 42.21 4.09
3053 4532 9.357652 CTTTGTTCTTTTTCATCTTTGAGAACA 57.642 29.630 11.42 11.42 39.55 3.18
3112 4591 5.533154 CCATGGTAGTAAATAATTGCGGGAA 59.467 40.000 2.57 0.00 0.00 3.97
3132 4611 6.804783 CGGGAATAAACCATTGAGTTTGTAAC 59.195 38.462 11.28 0.00 40.15 2.50
3133 4612 7.308951 CGGGAATAAACCATTGAGTTTGTAACT 60.309 37.037 11.28 0.00 46.38 2.24
3134 4613 8.364894 GGGAATAAACCATTGAGTTTGTAACTT 58.635 33.333 11.28 1.81 43.03 2.66
3135 4614 9.758651 GGAATAAACCATTGAGTTTGTAACTTT 57.241 29.630 11.28 0.00 43.03 2.66
3139 4618 7.826260 AACCATTGAGTTTGTAACTTTGTTG 57.174 32.000 0.00 0.00 43.03 3.33
3140 4619 7.164230 ACCATTGAGTTTGTAACTTTGTTGA 57.836 32.000 0.00 0.00 43.03 3.18
3141 4620 7.033185 ACCATTGAGTTTGTAACTTTGTTGAC 58.967 34.615 0.00 0.00 43.03 3.18
3142 4621 7.093945 ACCATTGAGTTTGTAACTTTGTTGACT 60.094 33.333 0.00 0.00 43.03 3.41
3143 4622 8.402472 CCATTGAGTTTGTAACTTTGTTGACTA 58.598 33.333 0.00 0.00 43.03 2.59
3144 4623 9.950680 CATTGAGTTTGTAACTTTGTTGACTAT 57.049 29.630 0.00 0.00 43.03 2.12
3161 4640 9.562408 TGTTGACTATAATAAATAATTGCGGGA 57.438 29.630 0.00 0.00 0.00 5.14
3172 4651 7.784633 AAATAATTGCGGGAATAAACCATTG 57.215 32.000 0.00 0.00 0.00 2.82
3173 4652 6.723298 ATAATTGCGGGAATAAACCATTGA 57.277 33.333 0.00 0.00 0.00 2.57
3174 4653 4.654091 ATTGCGGGAATAAACCATTGAG 57.346 40.909 0.00 0.00 0.00 3.02
3175 4654 3.080300 TGCGGGAATAAACCATTGAGT 57.920 42.857 0.00 0.00 0.00 3.41
3176 4655 3.426615 TGCGGGAATAAACCATTGAGTT 58.573 40.909 0.00 0.00 0.00 3.01
3177 4656 3.829601 TGCGGGAATAAACCATTGAGTTT 59.170 39.130 7.91 7.91 42.47 2.66
3178 4657 4.173256 GCGGGAATAAACCATTGAGTTTG 58.827 43.478 11.28 0.00 40.15 2.93
3179 4658 4.321675 GCGGGAATAAACCATTGAGTTTGT 60.322 41.667 11.28 4.67 40.15 2.83
3180 4659 5.106078 GCGGGAATAAACCATTGAGTTTGTA 60.106 40.000 11.28 0.00 40.15 2.41
3181 4660 6.570764 GCGGGAATAAACCATTGAGTTTGTAA 60.571 38.462 11.28 0.00 40.15 2.41
3182 4661 6.804783 CGGGAATAAACCATTGAGTTTGTAAC 59.195 38.462 11.28 0.00 40.15 2.50
3188 4667 7.826260 AAACCATTGAGTTTGTAACTTTGTG 57.174 32.000 0.00 0.00 43.03 3.33
3222 4701 7.827819 TGAGTTCATCGTAAGTAAATTCAGG 57.172 36.000 0.00 0.00 39.48 3.86
3225 4704 4.448210 TCATCGTAAGTAAATTCAGGGGC 58.552 43.478 0.00 0.00 39.48 5.80
3300 4817 1.571919 CATAGAGGCGGCACTTGTAC 58.428 55.000 15.09 0.00 0.00 2.90
3349 4866 2.728817 GAGTATGGCCGGACCGAG 59.271 66.667 17.49 6.74 43.94 4.63
3410 4927 8.796475 TCAAGTTTCTCCTTGATAAATTTCCAG 58.204 33.333 0.00 0.00 44.39 3.86
3411 4928 7.163001 AGTTTCTCCTTGATAAATTTCCAGC 57.837 36.000 0.00 0.00 0.00 4.85
3412 4929 6.153510 AGTTTCTCCTTGATAAATTTCCAGCC 59.846 38.462 0.00 0.00 0.00 4.85
3413 4930 5.191727 TCTCCTTGATAAATTTCCAGCCA 57.808 39.130 0.00 0.00 0.00 4.75
3414 4931 5.769835 TCTCCTTGATAAATTTCCAGCCAT 58.230 37.500 0.00 0.00 0.00 4.40
3416 4933 6.772716 TCTCCTTGATAAATTTCCAGCCATAC 59.227 38.462 0.00 0.00 0.00 2.39
3417 4934 6.430864 TCCTTGATAAATTTCCAGCCATACA 58.569 36.000 0.00 0.00 0.00 2.29
3418 4935 6.894654 TCCTTGATAAATTTCCAGCCATACAA 59.105 34.615 0.00 0.00 0.00 2.41
3419 4936 7.398618 TCCTTGATAAATTTCCAGCCATACAAA 59.601 33.333 0.00 0.00 0.00 2.83
3420 4937 8.206189 CCTTGATAAATTTCCAGCCATACAAAT 58.794 33.333 0.00 0.00 0.00 2.32
3423 4940 9.194972 TGATAAATTTCCAGCCATACAAATACA 57.805 29.630 0.00 0.00 0.00 2.29
3426 4943 4.981806 TTCCAGCCATACAAATACAAGC 57.018 40.909 0.00 0.00 0.00 4.01
3430 4947 4.046462 CAGCCATACAAATACAAGCATGC 58.954 43.478 10.51 10.51 0.00 4.06
3431 4948 3.700539 AGCCATACAAATACAAGCATGCA 59.299 39.130 21.98 0.00 0.00 3.96
3432 4949 3.798337 GCCATACAAATACAAGCATGCAC 59.202 43.478 21.98 0.00 0.00 4.57
3433 4950 4.037021 CCATACAAATACAAGCATGCACG 58.963 43.478 21.98 12.74 0.00 5.34
3434 4951 4.438608 CCATACAAATACAAGCATGCACGT 60.439 41.667 21.98 18.11 0.00 4.49
3435 4952 3.201726 ACAAATACAAGCATGCACGTC 57.798 42.857 21.98 0.00 0.00 4.34
3436 4953 2.551887 ACAAATACAAGCATGCACGTCA 59.448 40.909 21.98 0.59 0.00 4.35
3437 4954 2.900122 AATACAAGCATGCACGTCAC 57.100 45.000 21.98 0.00 0.00 3.67
3438 4955 1.086696 ATACAAGCATGCACGTCACC 58.913 50.000 21.98 0.00 0.00 4.02
3439 4956 0.953471 TACAAGCATGCACGTCACCC 60.953 55.000 21.98 0.00 0.00 4.61
3442 4959 3.788766 GCATGCACGTCACCCGAC 61.789 66.667 14.21 0.00 40.70 4.79
3450 4967 3.041940 GTCACCCGACGTTGCCAG 61.042 66.667 0.00 0.00 31.07 4.85
3451 4968 4.980805 TCACCCGACGTTGCCAGC 62.981 66.667 0.00 0.00 0.00 4.85
3453 4970 4.329545 ACCCGACGTTGCCAGCAT 62.330 61.111 0.00 0.00 0.00 3.79
3454 4971 3.803082 CCCGACGTTGCCAGCATG 61.803 66.667 0.00 0.00 0.00 4.06
3455 4972 3.049674 CCGACGTTGCCAGCATGT 61.050 61.111 0.00 0.00 0.00 3.21
3456 4973 2.174107 CGACGTTGCCAGCATGTG 59.826 61.111 3.13 0.00 0.00 3.21
3471 4988 2.609427 ATGTGGTCATGATCGAGGTG 57.391 50.000 0.00 0.00 32.51 4.00
3472 4989 0.108186 TGTGGTCATGATCGAGGTGC 60.108 55.000 0.00 0.00 0.00 5.01
3476 4993 2.292267 GGTCATGATCGAGGTGCAAAT 58.708 47.619 0.00 0.00 0.00 2.32
3477 4994 2.289002 GGTCATGATCGAGGTGCAAATC 59.711 50.000 0.00 0.00 0.00 2.17
3478 4995 2.289002 GTCATGATCGAGGTGCAAATCC 59.711 50.000 0.00 0.00 0.00 3.01
3481 4998 2.564771 TGATCGAGGTGCAAATCCATC 58.435 47.619 0.00 0.00 0.00 3.51
3482 4999 2.171237 TGATCGAGGTGCAAATCCATCT 59.829 45.455 8.00 0.00 0.00 2.90
3484 5001 3.179443 TCGAGGTGCAAATCCATCTAC 57.821 47.619 0.00 0.00 0.00 2.59
3486 5003 1.599542 GAGGTGCAAATCCATCTACGC 59.400 52.381 0.00 0.00 0.00 4.42
3487 5004 0.663153 GGTGCAAATCCATCTACGCC 59.337 55.000 0.00 0.00 0.00 5.68
3488 5005 1.668419 GTGCAAATCCATCTACGCCT 58.332 50.000 0.00 0.00 0.00 5.52
3489 5006 1.599542 GTGCAAATCCATCTACGCCTC 59.400 52.381 0.00 0.00 0.00 4.70
3490 5007 1.486310 TGCAAATCCATCTACGCCTCT 59.514 47.619 0.00 0.00 0.00 3.69
3492 5009 2.945668 GCAAATCCATCTACGCCTCTTT 59.054 45.455 0.00 0.00 0.00 2.52
3493 5010 3.242870 GCAAATCCATCTACGCCTCTTTG 60.243 47.826 0.00 0.00 0.00 2.77
3494 5011 3.914426 AATCCATCTACGCCTCTTTGT 57.086 42.857 0.00 0.00 0.00 2.83
3495 5012 2.672961 TCCATCTACGCCTCTTTGTG 57.327 50.000 0.00 0.00 0.00 3.33
3496 5013 2.176045 TCCATCTACGCCTCTTTGTGA 58.824 47.619 0.00 0.00 0.00 3.58
3497 5014 2.094182 TCCATCTACGCCTCTTTGTGAC 60.094 50.000 0.00 0.00 0.00 3.67
3499 5016 2.724977 TCTACGCCTCTTTGTGACTG 57.275 50.000 0.00 0.00 0.00 3.51
3500 5017 2.235891 TCTACGCCTCTTTGTGACTGA 58.764 47.619 0.00 0.00 0.00 3.41
3501 5018 2.229062 TCTACGCCTCTTTGTGACTGAG 59.771 50.000 0.00 0.00 0.00 3.35
3502 5019 0.753262 ACGCCTCTTTGTGACTGAGT 59.247 50.000 0.00 0.00 0.00 3.41
3504 5021 2.364324 ACGCCTCTTTGTGACTGAGTAA 59.636 45.455 0.00 0.00 0.00 2.24
3506 5023 3.997021 CGCCTCTTTGTGACTGAGTAATT 59.003 43.478 0.00 0.00 0.00 1.40
3508 5025 5.637810 CGCCTCTTTGTGACTGAGTAATTAA 59.362 40.000 0.00 0.00 0.00 1.40
3509 5026 6.401153 CGCCTCTTTGTGACTGAGTAATTAAC 60.401 42.308 0.00 0.00 0.00 2.01
3510 5027 6.651225 GCCTCTTTGTGACTGAGTAATTAACT 59.349 38.462 0.00 0.00 42.80 2.24
3511 5028 7.817962 GCCTCTTTGTGACTGAGTAATTAACTA 59.182 37.037 0.00 0.00 39.07 2.24
3512 5029 9.706691 CCTCTTTGTGACTGAGTAATTAACTAA 57.293 33.333 0.00 0.00 39.07 2.24
3518 5035 9.542462 TGTGACTGAGTAATTAACTAATATGGC 57.458 33.333 0.00 0.00 39.07 4.40
3519 5036 8.989980 GTGACTGAGTAATTAACTAATATGGCC 58.010 37.037 0.00 0.00 39.07 5.36
3520 5037 8.710239 TGACTGAGTAATTAACTAATATGGCCA 58.290 33.333 8.56 8.56 39.07 5.36
3521 5038 9.726438 GACTGAGTAATTAACTAATATGGCCAT 57.274 33.333 24.45 24.45 39.07 4.40
3524 5041 8.792633 TGAGTAATTAACTAATATGGCCATTGC 58.207 33.333 26.37 5.93 39.07 3.56
3525 5042 8.940397 AGTAATTAACTAATATGGCCATTGCT 57.060 30.769 26.37 11.26 36.36 3.91
3528 5045 7.944729 ATTAACTAATATGGCCATTGCTAGG 57.055 36.000 26.37 11.95 37.74 3.02
3534 5051 3.903783 GCCATTGCTAGGCGTCAA 58.096 55.556 0.00 0.00 43.15 3.18
3535 5052 1.429423 GCCATTGCTAGGCGTCAAC 59.571 57.895 0.00 0.00 43.15 3.18
3536 5053 1.993369 GCCATTGCTAGGCGTCAACC 61.993 60.000 0.00 0.00 43.15 3.77
3538 5055 0.739462 CATTGCTAGGCGTCAACCGA 60.739 55.000 0.00 0.00 39.56 4.69
3544 5061 4.278956 GGCGTCAACCGACTGATT 57.721 55.556 0.00 0.00 43.06 2.57
3545 5062 2.540145 GGCGTCAACCGACTGATTT 58.460 52.632 0.00 0.00 43.06 2.17
3546 5063 0.442699 GGCGTCAACCGACTGATTTC 59.557 55.000 0.00 0.00 43.06 2.17
3547 5064 1.429463 GCGTCAACCGACTGATTTCT 58.571 50.000 0.00 0.00 40.23 2.52
3548 5065 1.798813 GCGTCAACCGACTGATTTCTT 59.201 47.619 0.00 0.00 40.23 2.52
3549 5066 2.159827 GCGTCAACCGACTGATTTCTTC 60.160 50.000 0.00 0.00 40.23 2.87
3550 5067 3.318017 CGTCAACCGACTGATTTCTTCT 58.682 45.455 0.00 0.00 40.23 2.85
3551 5068 3.121944 CGTCAACCGACTGATTTCTTCTG 59.878 47.826 0.00 0.00 40.23 3.02
3552 5069 3.433615 GTCAACCGACTGATTTCTTCTGG 59.566 47.826 0.00 0.00 39.22 3.86
3553 5070 3.323691 TCAACCGACTGATTTCTTCTGGA 59.676 43.478 0.00 0.00 0.00 3.86
3554 5071 4.065088 CAACCGACTGATTTCTTCTGGAA 58.935 43.478 0.00 0.00 0.00 3.53
3555 5072 4.559862 ACCGACTGATTTCTTCTGGAAT 57.440 40.909 0.00 0.00 33.53 3.01
3556 5073 4.508662 ACCGACTGATTTCTTCTGGAATC 58.491 43.478 0.00 0.00 33.53 2.52
3557 5074 4.020218 ACCGACTGATTTCTTCTGGAATCA 60.020 41.667 0.58 0.58 33.53 2.57
3558 5075 4.569966 CCGACTGATTTCTTCTGGAATCAG 59.430 45.833 19.70 19.70 40.77 2.90
3559 5076 4.033817 CGACTGATTTCTTCTGGAATCAGC 59.966 45.833 20.70 14.56 39.85 4.26
3560 5077 4.268359 ACTGATTTCTTCTGGAATCAGCC 58.732 43.478 20.70 0.00 39.85 4.85
3561 5078 3.273434 TGATTTCTTCTGGAATCAGCCG 58.727 45.455 0.00 0.00 40.69 5.52
3562 5079 2.113860 TTTCTTCTGGAATCAGCCGG 57.886 50.000 0.00 0.00 40.69 6.13
3563 5080 0.253044 TTCTTCTGGAATCAGCCGGG 59.747 55.000 2.18 0.00 40.69 5.73
3564 5081 0.909610 TCTTCTGGAATCAGCCGGGT 60.910 55.000 0.00 0.00 40.69 5.28
3565 5082 0.035056 CTTCTGGAATCAGCCGGGTT 60.035 55.000 1.64 0.00 40.69 4.11
3566 5083 0.322456 TTCTGGAATCAGCCGGGTTG 60.322 55.000 1.64 4.25 40.69 3.77
3567 5084 1.198094 TCTGGAATCAGCCGGGTTGA 61.198 55.000 16.19 16.19 40.69 3.18
3568 5085 0.107017 CTGGAATCAGCCGGGTTGAT 60.107 55.000 19.31 19.31 35.11 2.57
3569 5086 1.140852 CTGGAATCAGCCGGGTTGATA 59.859 52.381 24.14 10.14 32.59 2.15
3570 5087 1.140852 TGGAATCAGCCGGGTTGATAG 59.859 52.381 24.14 0.00 32.59 2.08
3571 5088 1.230324 GAATCAGCCGGGTTGATAGC 58.770 55.000 24.14 16.18 32.59 2.97
3572 5089 0.179018 AATCAGCCGGGTTGATAGCC 60.179 55.000 24.14 0.00 32.59 3.93
3580 5097 2.156343 GGGTTGATAGCCGTCTGATC 57.844 55.000 0.00 0.00 31.15 2.92
3592 5109 2.606551 CCGTCTGATCCGTCATGATCTG 60.607 54.545 0.00 0.00 41.42 2.90
3594 5111 2.625314 GTCTGATCCGTCATGATCTGGA 59.375 50.000 14.36 14.36 41.42 3.86
3595 5112 3.257873 GTCTGATCCGTCATGATCTGGAT 59.742 47.826 20.67 20.67 43.75 3.41
3596 5113 3.257624 TCTGATCCGTCATGATCTGGATG 59.742 47.826 23.80 14.50 41.21 3.51
3597 5114 2.301009 TGATCCGTCATGATCTGGATGG 59.699 50.000 23.80 15.38 41.21 3.51
3598 5115 2.086610 TCCGTCATGATCTGGATGGA 57.913 50.000 18.49 18.49 44.77 3.41
3600 5117 2.771372 TCCGTCATGATCTGGATGGAAA 59.229 45.455 19.52 4.88 44.18 3.13
3602 5119 5.904730 TCCGTCATGATCTGGATGGAAACA 61.905 45.833 19.52 4.07 44.18 2.83
3617 5134 5.114764 TGGAAACATAGCCATCTGATTCA 57.885 39.130 0.00 0.00 33.40 2.57
3619 5136 5.128919 GGAAACATAGCCATCTGATTCAGT 58.871 41.667 13.23 0.00 32.61 3.41
3620 5137 5.238214 GGAAACATAGCCATCTGATTCAGTC 59.762 44.000 13.23 0.00 32.61 3.51
3621 5138 5.363562 AACATAGCCATCTGATTCAGTCA 57.636 39.130 13.23 0.00 32.61 3.41
3622 5139 5.363562 ACATAGCCATCTGATTCAGTCAA 57.636 39.130 13.23 0.00 36.14 3.18
3623 5140 5.748402 ACATAGCCATCTGATTCAGTCAAA 58.252 37.500 13.23 0.00 36.14 2.69
3624 5141 5.587844 ACATAGCCATCTGATTCAGTCAAAC 59.412 40.000 13.23 1.84 36.14 2.93
3628 5145 3.425359 CCATCTGATTCAGTCAAACGCAC 60.425 47.826 13.23 0.00 36.14 5.34
3630 5147 2.802247 TCTGATTCAGTCAAACGCACAG 59.198 45.455 13.23 0.00 36.14 3.66
3632 5149 2.543848 TGATTCAGTCAAACGCACAGAC 59.456 45.455 0.00 0.00 32.78 3.51
3633 5150 0.927537 TTCAGTCAAACGCACAGACG 59.072 50.000 0.00 0.00 37.36 4.18
3634 5151 1.083401 CAGTCAAACGCACAGACGC 60.083 57.895 0.00 0.00 37.36 5.19
3636 5153 1.083401 GTCAAACGCACAGACGCTG 60.083 57.895 5.47 5.47 37.52 5.18
3637 5154 2.425773 CAAACGCACAGACGCTGC 60.426 61.111 6.74 0.00 34.37 5.25
3638 5155 2.588877 AAACGCACAGACGCTGCT 60.589 55.556 6.74 0.00 34.37 4.24
3639 5156 2.180204 AAACGCACAGACGCTGCTT 61.180 52.632 6.74 0.00 34.37 3.91
3640 5157 2.105960 AAACGCACAGACGCTGCTTC 62.106 55.000 6.74 0.00 34.37 3.86
3642 5159 3.038417 GCACAGACGCTGCTTCGT 61.038 61.111 3.62 3.62 46.38 3.85
3643 5160 2.598632 GCACAGACGCTGCTTCGTT 61.599 57.895 6.74 0.00 43.42 3.85
3644 5161 1.488957 CACAGACGCTGCTTCGTTC 59.511 57.895 6.74 0.65 43.42 3.95
3645 5162 0.941463 CACAGACGCTGCTTCGTTCT 60.941 55.000 6.74 2.58 43.42 3.01
3647 5164 0.941463 CAGACGCTGCTTCGTTCTGT 60.941 55.000 5.40 0.00 43.42 3.41
3648 5165 0.664767 AGACGCTGCTTCGTTCTGTC 60.665 55.000 5.40 0.00 43.42 3.51
3649 5166 1.618640 GACGCTGCTTCGTTCTGTCC 61.619 60.000 5.40 0.00 43.42 4.02
3650 5167 2.383527 CGCTGCTTCGTTCTGTCCC 61.384 63.158 0.00 0.00 0.00 4.46
3651 5168 1.301716 GCTGCTTCGTTCTGTCCCA 60.302 57.895 0.00 0.00 0.00 4.37
3654 5171 1.300697 GCTTCGTTCTGTCCCACGT 60.301 57.895 0.00 0.00 37.66 4.49
3655 5172 1.282930 GCTTCGTTCTGTCCCACGTC 61.283 60.000 0.00 0.00 37.66 4.34
3657 5174 3.103911 CGTTCTGTCCCACGTCGC 61.104 66.667 0.00 0.00 0.00 5.19
3658 5175 2.737376 GTTCTGTCCCACGTCGCC 60.737 66.667 0.00 0.00 0.00 5.54
3659 5176 4.351938 TTCTGTCCCACGTCGCCG 62.352 66.667 0.00 0.00 40.83 6.46
3675 5192 3.033764 CGCAACGCACGTAGGTGT 61.034 61.111 16.36 0.00 46.13 4.16
3681 5198 4.573162 GCACGTAGGTGTGAGACC 57.427 61.111 16.36 0.00 46.13 3.85
3688 5205 2.662596 GGTGTGAGACCATCGCCA 59.337 61.111 0.00 0.00 45.34 5.69
3689 5206 1.741770 GGTGTGAGACCATCGCCAC 60.742 63.158 0.00 0.00 45.34 5.01
3690 5207 1.741770 GTGTGAGACCATCGCCACC 60.742 63.158 0.00 0.00 37.65 4.61
3691 5208 2.125106 GTGAGACCATCGCCACCC 60.125 66.667 0.00 0.00 31.87 4.61
3692 5209 3.770040 TGAGACCATCGCCACCCG 61.770 66.667 0.00 0.00 38.61 5.28
3707 5224 3.506096 CCGACTCGCTCCGCAGTA 61.506 66.667 0.00 0.00 0.00 2.74
3708 5225 2.023461 CGACTCGCTCCGCAGTAG 59.977 66.667 0.00 0.00 0.00 2.57
3709 5226 2.278271 GACTCGCTCCGCAGTAGC 60.278 66.667 0.00 0.00 35.58 3.58
3710 5227 2.752238 ACTCGCTCCGCAGTAGCT 60.752 61.111 0.00 0.00 37.32 3.32
3711 5228 1.437772 GACTCGCTCCGCAGTAGCTA 61.438 60.000 0.00 0.00 37.32 3.32
3712 5229 1.281353 CTCGCTCCGCAGTAGCTAG 59.719 63.158 0.00 0.00 37.32 3.42
3713 5230 1.153229 TCGCTCCGCAGTAGCTAGA 60.153 57.895 0.00 0.00 37.32 2.43
3714 5231 0.746923 TCGCTCCGCAGTAGCTAGAA 60.747 55.000 0.00 0.00 37.32 2.10
3715 5232 0.317436 CGCTCCGCAGTAGCTAGAAG 60.317 60.000 0.00 0.00 37.32 2.85
3716 5233 0.741915 GCTCCGCAGTAGCTAGAAGT 59.258 55.000 0.00 0.00 36.21 3.01
3717 5234 1.948145 GCTCCGCAGTAGCTAGAAGTA 59.052 52.381 0.00 0.00 36.21 2.24
3718 5235 2.031508 GCTCCGCAGTAGCTAGAAGTAG 60.032 54.545 0.00 0.00 36.21 2.57
3735 5252 4.838152 GCCGATGCTTGCTCCCGA 62.838 66.667 0.00 0.00 33.53 5.14
3736 5253 2.109799 CCGATGCTTGCTCCCGAT 59.890 61.111 0.00 0.00 0.00 4.18
3737 5254 2.249535 CCGATGCTTGCTCCCGATG 61.250 63.158 0.00 0.00 0.00 3.84
3738 5255 2.249535 CGATGCTTGCTCCCGATGG 61.250 63.158 0.00 0.00 0.00 3.51
3739 5256 1.146930 GATGCTTGCTCCCGATGGA 59.853 57.895 0.00 0.00 38.75 3.41
3747 5264 3.856309 TCCCGATGGAGATGACCG 58.144 61.111 0.00 0.00 35.03 4.79
3748 5265 2.029666 CCCGATGGAGATGACCGC 59.970 66.667 0.00 0.00 0.00 5.68
3749 5266 2.796193 CCCGATGGAGATGACCGCA 61.796 63.158 0.00 0.00 0.00 5.69
3750 5267 1.592669 CCGATGGAGATGACCGCAC 60.593 63.158 0.00 0.00 0.00 5.34
3751 5268 1.592669 CGATGGAGATGACCGCACC 60.593 63.158 0.00 0.00 0.00 5.01
3752 5269 1.522092 GATGGAGATGACCGCACCA 59.478 57.895 0.00 0.00 35.09 4.17
3753 5270 0.811616 GATGGAGATGACCGCACCAC 60.812 60.000 0.00 0.00 33.38 4.16
3754 5271 1.267574 ATGGAGATGACCGCACCACT 61.268 55.000 0.00 0.00 33.38 4.00
3755 5272 1.153549 GGAGATGACCGCACCACTC 60.154 63.158 0.00 0.00 0.00 3.51
3756 5273 1.517257 GAGATGACCGCACCACTCG 60.517 63.158 0.00 0.00 0.00 4.18
3757 5274 1.934220 GAGATGACCGCACCACTCGA 61.934 60.000 0.00 0.00 0.00 4.04
3758 5275 1.080093 GATGACCGCACCACTCGAA 60.080 57.895 0.00 0.00 0.00 3.71
3759 5276 0.460284 GATGACCGCACCACTCGAAT 60.460 55.000 0.00 0.00 0.00 3.34
3760 5277 0.460284 ATGACCGCACCACTCGAATC 60.460 55.000 0.00 0.00 0.00 2.52
3761 5278 2.126071 ACCGCACCACTCGAATCG 60.126 61.111 0.00 0.00 0.00 3.34
3762 5279 3.554692 CCGCACCACTCGAATCGC 61.555 66.667 0.00 0.00 0.00 4.58
3763 5280 3.554692 CGCACCACTCGAATCGCC 61.555 66.667 0.00 0.00 0.00 5.54
3764 5281 3.195698 GCACCACTCGAATCGCCC 61.196 66.667 0.00 0.00 0.00 6.13
3765 5282 2.511600 CACCACTCGAATCGCCCC 60.512 66.667 0.00 0.00 0.00 5.80
3766 5283 4.143333 ACCACTCGAATCGCCCCG 62.143 66.667 0.00 0.00 0.00 5.73
3768 5285 4.812476 CACTCGAATCGCCCCGCA 62.812 66.667 0.00 0.00 0.00 5.69
3769 5286 4.514577 ACTCGAATCGCCCCGCAG 62.515 66.667 0.00 0.00 0.00 5.18
3784 5301 4.694233 CAGCAGCAGCACCCGAGT 62.694 66.667 3.17 0.00 45.49 4.18
3785 5302 2.997315 AGCAGCAGCACCCGAGTA 60.997 61.111 3.17 0.00 45.49 2.59
3786 5303 2.047274 GCAGCAGCACCCGAGTAA 60.047 61.111 0.00 0.00 41.58 2.24
3787 5304 1.450312 GCAGCAGCACCCGAGTAAT 60.450 57.895 0.00 0.00 41.58 1.89
3788 5305 1.709147 GCAGCAGCACCCGAGTAATG 61.709 60.000 0.00 0.00 41.58 1.90
3789 5306 1.450312 AGCAGCACCCGAGTAATGC 60.450 57.895 0.00 0.00 39.74 3.56
3794 5311 1.739067 GCACCCGAGTAATGCTTTCT 58.261 50.000 0.00 0.00 36.40 2.52
3795 5312 1.666189 GCACCCGAGTAATGCTTTCTC 59.334 52.381 0.00 0.00 36.40 2.87
3796 5313 1.927174 CACCCGAGTAATGCTTTCTCG 59.073 52.381 18.51 18.51 46.77 4.04
3797 5314 0.931005 CCCGAGTAATGCTTTCTCGC 59.069 55.000 19.35 5.47 46.15 5.03
3798 5315 1.471676 CCCGAGTAATGCTTTCTCGCT 60.472 52.381 19.35 4.48 46.15 4.93
3799 5316 1.590238 CCGAGTAATGCTTTCTCGCTG 59.410 52.381 19.35 9.95 46.15 5.18
3800 5317 1.005557 CGAGTAATGCTTTCTCGCTGC 60.006 52.381 15.62 0.00 42.94 5.25
3801 5318 2.275318 GAGTAATGCTTTCTCGCTGCT 58.725 47.619 0.00 0.00 0.00 4.24
3802 5319 2.275318 AGTAATGCTTTCTCGCTGCTC 58.725 47.619 0.00 0.00 0.00 4.26
3803 5320 1.328986 GTAATGCTTTCTCGCTGCTCC 59.671 52.381 0.00 0.00 0.00 4.70
3804 5321 1.364626 AATGCTTTCTCGCTGCTCCG 61.365 55.000 0.00 0.00 0.00 4.63
3805 5322 3.191539 GCTTTCTCGCTGCTCCGG 61.192 66.667 0.00 0.00 0.00 5.14
3806 5323 2.573869 CTTTCTCGCTGCTCCGGA 59.426 61.111 2.93 2.93 0.00 5.14
3807 5324 1.079819 CTTTCTCGCTGCTCCGGAA 60.080 57.895 5.23 0.00 0.00 4.30
3808 5325 1.079819 TTTCTCGCTGCTCCGGAAG 60.080 57.895 5.23 1.29 0.00 3.46
3828 5345 3.434319 CACCGGGTGCATCACAGC 61.434 66.667 15.29 0.00 46.36 4.40
3838 5355 1.068125 TGCATCACAGCAACATCAAGC 60.068 47.619 0.00 0.00 42.46 4.01
3839 5356 1.734707 GCATCACAGCAACATCAAGCC 60.735 52.381 0.00 0.00 0.00 4.35
3840 5357 0.806868 ATCACAGCAACATCAAGCCG 59.193 50.000 0.00 0.00 0.00 5.52
3841 5358 1.443194 CACAGCAACATCAAGCCGC 60.443 57.895 0.00 0.00 0.00 6.53
3842 5359 1.898094 ACAGCAACATCAAGCCGCA 60.898 52.632 0.00 0.00 0.00 5.69
3843 5360 1.246056 ACAGCAACATCAAGCCGCAT 61.246 50.000 0.00 0.00 0.00 4.73
3844 5361 0.108992 CAGCAACATCAAGCCGCATT 60.109 50.000 0.00 0.00 0.00 3.56
3845 5362 0.108992 AGCAACATCAAGCCGCATTG 60.109 50.000 0.00 0.00 0.00 2.82
3846 5363 0.388907 GCAACATCAAGCCGCATTGT 60.389 50.000 0.00 0.00 0.00 2.71
3847 5364 1.621107 CAACATCAAGCCGCATTGTC 58.379 50.000 0.00 0.00 0.00 3.18
3848 5365 0.168788 AACATCAAGCCGCATTGTCG 59.831 50.000 0.00 0.00 0.00 4.35
3856 5373 2.816958 CGCATTGTCGGAGCTGCT 60.817 61.111 0.00 0.00 32.48 4.24
3857 5374 1.519234 CGCATTGTCGGAGCTGCTA 60.519 57.895 0.15 0.00 32.48 3.49
3858 5375 0.877649 CGCATTGTCGGAGCTGCTAT 60.878 55.000 0.15 0.00 32.48 2.97
3859 5376 1.303309 GCATTGTCGGAGCTGCTATT 58.697 50.000 0.15 0.00 0.00 1.73
3860 5377 1.003116 GCATTGTCGGAGCTGCTATTG 60.003 52.381 0.15 0.00 0.00 1.90
3861 5378 1.600957 CATTGTCGGAGCTGCTATTGG 59.399 52.381 0.15 0.00 0.00 3.16
3862 5379 0.901827 TTGTCGGAGCTGCTATTGGA 59.098 50.000 0.15 0.00 0.00 3.53
3863 5380 0.461548 TGTCGGAGCTGCTATTGGAG 59.538 55.000 0.15 0.00 34.56 3.86
3873 5390 2.596904 GCTATTGGAGCCTAACGACA 57.403 50.000 0.00 0.00 46.41 4.35
3874 5391 2.202566 GCTATTGGAGCCTAACGACAC 58.797 52.381 0.00 0.00 46.41 3.67
3875 5392 2.159085 GCTATTGGAGCCTAACGACACT 60.159 50.000 0.00 0.00 46.41 3.55
3876 5393 2.674796 ATTGGAGCCTAACGACACTC 57.325 50.000 0.00 0.00 0.00 3.51
3878 5395 2.581074 GGAGCCTAACGACACTCCT 58.419 57.895 0.00 0.00 44.41 3.69
3879 5396 0.896226 GGAGCCTAACGACACTCCTT 59.104 55.000 0.00 0.00 44.41 3.36
3880 5397 1.404315 GGAGCCTAACGACACTCCTTG 60.404 57.143 0.00 0.00 44.41 3.61
3881 5398 0.037232 AGCCTAACGACACTCCTTGC 60.037 55.000 0.00 0.00 0.00 4.01
3882 5399 0.320421 GCCTAACGACACTCCTTGCA 60.320 55.000 0.00 0.00 0.00 4.08
3883 5400 1.714794 CCTAACGACACTCCTTGCAG 58.285 55.000 0.00 0.00 0.00 4.41
3884 5401 1.071605 CTAACGACACTCCTTGCAGC 58.928 55.000 0.00 0.00 0.00 5.25
3885 5402 0.391228 TAACGACACTCCTTGCAGCA 59.609 50.000 0.00 0.00 0.00 4.41
3886 5403 1.160329 AACGACACTCCTTGCAGCAC 61.160 55.000 0.00 0.00 0.00 4.40
3887 5404 2.320587 CGACACTCCTTGCAGCACC 61.321 63.158 0.00 0.00 0.00 5.01
3888 5405 2.281070 ACACTCCTTGCAGCACCG 60.281 61.111 0.00 0.00 0.00 4.94
3889 5406 2.031012 CACTCCTTGCAGCACCGA 59.969 61.111 0.00 0.00 0.00 4.69
3890 5407 2.031163 ACTCCTTGCAGCACCGAC 59.969 61.111 0.00 0.00 0.00 4.79
3891 5408 3.114616 CTCCTTGCAGCACCGACG 61.115 66.667 0.00 0.00 0.00 5.12
3892 5409 4.680237 TCCTTGCAGCACCGACGG 62.680 66.667 13.61 13.61 0.00 4.79
3893 5410 4.680237 CCTTGCAGCACCGACGGA 62.680 66.667 23.38 0.00 0.00 4.69
3894 5411 3.114616 CTTGCAGCACCGACGGAG 61.115 66.667 23.38 14.88 0.00 4.63
3895 5412 4.680237 TTGCAGCACCGACGGAGG 62.680 66.667 23.38 13.36 37.30 4.30
3916 5433 4.030452 GTCGGCCAGTTGCAGCAC 62.030 66.667 2.24 0.00 43.89 4.40
3937 5454 4.451150 CGCCCTTCGTAGCAGGCA 62.451 66.667 9.37 0.00 46.08 4.75
3938 5455 2.046314 GCCCTTCGTAGCAGGCAA 60.046 61.111 4.78 0.00 45.07 4.52
3939 5456 2.399356 GCCCTTCGTAGCAGGCAAC 61.399 63.158 4.78 0.00 45.07 4.17
3940 5457 1.003839 CCCTTCGTAGCAGGCAACA 60.004 57.895 0.00 0.00 41.41 3.33
3941 5458 0.605319 CCCTTCGTAGCAGGCAACAA 60.605 55.000 0.00 0.00 41.41 2.83
3942 5459 1.234821 CCTTCGTAGCAGGCAACAAA 58.765 50.000 0.00 0.00 41.41 2.83
3943 5460 1.606668 CCTTCGTAGCAGGCAACAAAA 59.393 47.619 0.00 0.00 41.41 2.44
3944 5461 2.034053 CCTTCGTAGCAGGCAACAAAAA 59.966 45.455 0.00 0.00 41.41 1.94
3945 5462 2.766970 TCGTAGCAGGCAACAAAAAC 57.233 45.000 0.00 0.00 41.41 2.43
3946 5463 1.335496 TCGTAGCAGGCAACAAAAACC 59.665 47.619 0.00 0.00 41.41 3.27
3947 5464 1.601914 CGTAGCAGGCAACAAAAACCC 60.602 52.381 0.00 0.00 41.41 4.11
3948 5465 1.410882 GTAGCAGGCAACAAAAACCCA 59.589 47.619 0.00 0.00 41.41 4.51
3949 5466 0.177836 AGCAGGCAACAAAAACCCAC 59.822 50.000 0.00 0.00 41.41 4.61
3950 5467 1.151172 GCAGGCAACAAAAACCCACG 61.151 55.000 0.00 0.00 41.41 4.94
3951 5468 0.174617 CAGGCAACAAAAACCCACGT 59.825 50.000 0.00 0.00 41.41 4.49
3952 5469 0.174617 AGGCAACAAAAACCCACGTG 59.825 50.000 9.08 9.08 41.41 4.49
3953 5470 0.108567 GGCAACAAAAACCCACGTGT 60.109 50.000 15.65 0.00 0.00 4.49
3954 5471 1.673329 GGCAACAAAAACCCACGTGTT 60.673 47.619 15.65 0.00 34.60 3.32
3956 5473 1.391826 CAACAAAAACCCACGTGTTGC 59.608 47.619 15.65 0.00 42.94 4.17
3957 5474 0.603569 ACAAAAACCCACGTGTTGCA 59.396 45.000 15.65 0.00 0.00 4.08
3958 5475 1.205893 ACAAAAACCCACGTGTTGCAT 59.794 42.857 15.65 0.00 0.00 3.96
3959 5476 2.275318 CAAAAACCCACGTGTTGCATT 58.725 42.857 15.65 1.06 0.00 3.56
3960 5477 1.933247 AAAACCCACGTGTTGCATTG 58.067 45.000 15.65 0.00 0.00 2.82
3961 5478 0.529555 AAACCCACGTGTTGCATTGC 60.530 50.000 15.65 0.46 0.00 3.56
3962 5479 2.049248 CCCACGTGTTGCATTGCC 60.049 61.111 15.65 0.00 0.00 4.52
3963 5480 2.726909 CCACGTGTTGCATTGCCA 59.273 55.556 15.65 0.00 0.00 4.92
3964 5481 1.289694 CCACGTGTTGCATTGCCAT 59.710 52.632 15.65 0.00 0.00 4.40
3965 5482 1.009903 CCACGTGTTGCATTGCCATG 61.010 55.000 15.65 5.92 0.00 3.66
3966 5483 0.318869 CACGTGTTGCATTGCCATGT 60.319 50.000 7.58 6.56 32.28 3.21
3967 5484 0.039256 ACGTGTTGCATTGCCATGTC 60.039 50.000 6.12 0.00 32.28 3.06
3968 5485 1.066656 CGTGTTGCATTGCCATGTCG 61.067 55.000 6.12 1.51 32.28 4.35
3969 5486 1.080637 TGTTGCATTGCCATGTCGC 60.081 52.632 6.12 0.00 32.28 5.19
3970 5487 2.153945 GTTGCATTGCCATGTCGCG 61.154 57.895 6.12 0.00 32.28 5.87
3971 5488 3.967833 TTGCATTGCCATGTCGCGC 62.968 57.895 0.00 0.00 32.28 6.86
3972 5489 4.479542 GCATTGCCATGTCGCGCA 62.480 61.111 8.75 2.86 32.28 6.09
3973 5490 2.577644 CATTGCCATGTCGCGCAC 60.578 61.111 8.75 5.56 33.97 5.34
3974 5491 3.814268 ATTGCCATGTCGCGCACC 61.814 61.111 8.75 0.00 33.97 5.01
3988 5505 4.135153 CACCTCGCCCGGAGAGTG 62.135 72.222 20.43 15.61 46.23 3.51
4010 5527 3.136123 CAGCGGCCACCATTCCAG 61.136 66.667 2.24 0.00 0.00 3.86
4013 5530 2.440796 CGGCCACCATTCCAGCAT 60.441 61.111 2.24 0.00 0.00 3.79
4014 5531 2.484062 CGGCCACCATTCCAGCATC 61.484 63.158 2.24 0.00 0.00 3.91
4015 5532 1.380246 GGCCACCATTCCAGCATCA 60.380 57.895 0.00 0.00 0.00 3.07
4016 5533 0.757935 GGCCACCATTCCAGCATCAT 60.758 55.000 0.00 0.00 0.00 2.45
4017 5534 0.387929 GCCACCATTCCAGCATCATG 59.612 55.000 0.00 0.00 0.00 3.07
4018 5535 1.771565 CCACCATTCCAGCATCATGT 58.228 50.000 0.00 0.00 0.00 3.21
4019 5536 1.407618 CCACCATTCCAGCATCATGTG 59.592 52.381 0.00 0.00 0.00 3.21
4020 5537 1.407618 CACCATTCCAGCATCATGTGG 59.592 52.381 0.00 0.00 34.87 4.17
4021 5538 1.285667 ACCATTCCAGCATCATGTGGA 59.714 47.619 5.19 5.19 41.29 4.02
4022 5539 1.954382 CCATTCCAGCATCATGTGGAG 59.046 52.381 8.43 0.96 43.80 3.86
4023 5540 1.337071 CATTCCAGCATCATGTGGAGC 59.663 52.381 8.43 0.00 43.80 4.70
4024 5541 0.394762 TTCCAGCATCATGTGGAGCC 60.395 55.000 8.43 0.00 43.80 4.70
4025 5542 1.077285 CCAGCATCATGTGGAGCCA 60.077 57.895 1.12 0.00 35.67 4.75
4026 5543 1.381928 CCAGCATCATGTGGAGCCAC 61.382 60.000 12.66 12.66 46.33 5.01
4057 5574 2.738521 GACGCAGCGTGTGGTGAT 60.739 61.111 28.57 0.00 46.53 3.06
4058 5575 3.015293 GACGCAGCGTGTGGTGATG 62.015 63.158 28.57 0.00 46.53 3.07
4059 5576 2.738139 CGCAGCGTGTGGTGATGA 60.738 61.111 6.65 0.00 46.53 2.92
4060 5577 2.863153 GCAGCGTGTGGTGATGAC 59.137 61.111 0.00 0.00 46.53 3.06
4061 5578 3.015293 GCAGCGTGTGGTGATGACG 62.015 63.158 0.00 0.00 46.53 4.35
4062 5579 1.372872 CAGCGTGTGGTGATGACGA 60.373 57.895 0.00 0.00 46.53 4.20
4063 5580 1.372997 AGCGTGTGGTGATGACGAC 60.373 57.895 0.00 0.00 35.05 4.34
4064 5581 1.663388 GCGTGTGGTGATGACGACA 60.663 57.895 0.00 0.00 38.37 4.35
4065 5582 1.617755 GCGTGTGGTGATGACGACAG 61.618 60.000 0.00 0.00 40.99 3.51
4066 5583 0.039527 CGTGTGGTGATGACGACAGA 60.040 55.000 0.00 0.00 40.99 3.41
4067 5584 1.402852 CGTGTGGTGATGACGACAGAT 60.403 52.381 0.00 0.00 40.99 2.90
4068 5585 1.995484 GTGTGGTGATGACGACAGATG 59.005 52.381 0.00 0.00 40.99 2.90
4069 5586 1.618343 TGTGGTGATGACGACAGATGT 59.382 47.619 0.00 0.00 36.04 3.06
4070 5587 2.037121 TGTGGTGATGACGACAGATGTT 59.963 45.455 0.00 0.00 36.04 2.71
4071 5588 2.413112 GTGGTGATGACGACAGATGTTG 59.587 50.000 0.00 0.00 31.42 3.33
4072 5589 1.394917 GGTGATGACGACAGATGTTGC 59.605 52.381 0.00 0.00 32.66 4.17
4073 5590 1.059692 GTGATGACGACAGATGTTGCG 59.940 52.381 0.00 0.00 32.66 4.85
4074 5591 1.067915 TGATGACGACAGATGTTGCGA 60.068 47.619 0.00 0.00 32.66 5.10
4075 5592 2.196749 GATGACGACAGATGTTGCGAT 58.803 47.619 0.00 0.00 32.66 4.58
4076 5593 1.349234 TGACGACAGATGTTGCGATG 58.651 50.000 0.00 0.00 32.66 3.84
4077 5594 0.025513 GACGACAGATGTTGCGATGC 59.974 55.000 0.00 0.00 32.66 3.91
4078 5595 0.670239 ACGACAGATGTTGCGATGCA 60.670 50.000 0.00 0.00 36.47 3.96
4079 5596 0.025898 CGACAGATGTTGCGATGCAG 59.974 55.000 0.00 0.00 40.61 4.41
4080 5597 0.247974 GACAGATGTTGCGATGCAGC 60.248 55.000 0.00 0.00 40.61 5.25
4081 5598 1.297378 CAGATGTTGCGATGCAGCG 60.297 57.895 22.00 22.00 42.53 5.18
4082 5599 2.023741 GATGTTGCGATGCAGCGG 59.976 61.111 27.22 8.00 42.53 5.52
4083 5600 2.436469 ATGTTGCGATGCAGCGGA 60.436 55.556 27.22 22.31 42.53 5.54
4084 5601 2.637715 GATGTTGCGATGCAGCGGAC 62.638 60.000 27.22 17.64 42.53 4.79
4085 5602 4.505217 GTTGCGATGCAGCGGACG 62.505 66.667 27.22 10.67 40.61 4.79
4086 5603 4.733371 TTGCGATGCAGCGGACGA 62.733 61.111 27.22 6.28 40.61 4.20
4109 5626 3.023118 CAGCTGCTGGATGATGCG 58.977 61.111 21.71 0.00 32.28 4.73
4110 5627 1.523032 CAGCTGCTGGATGATGCGA 60.523 57.895 21.71 0.00 32.28 5.10
4111 5628 1.523258 AGCTGCTGGATGATGCGAC 60.523 57.895 0.00 0.00 0.00 5.19
4112 5629 2.879070 GCTGCTGGATGATGCGACG 61.879 63.158 0.00 0.00 0.00 5.12
4113 5630 2.202919 TGCTGGATGATGCGACGG 60.203 61.111 0.00 0.00 0.00 4.79
4114 5631 2.106938 GCTGGATGATGCGACGGA 59.893 61.111 0.00 0.00 0.00 4.69
4115 5632 1.521457 GCTGGATGATGCGACGGAA 60.521 57.895 0.00 0.00 0.00 4.30
4116 5633 1.766143 GCTGGATGATGCGACGGAAC 61.766 60.000 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 5.837437 TCAAAGGCATTTTACGTTGACATT 58.163 33.333 0.00 0.00 31.80 2.71
74 75 8.706035 GCATATTGATGATCAAAGGCATTTTAC 58.294 33.333 12.36 0.00 40.12 2.01
86 87 8.817092 ATGTAATCCATGCATATTGATGATCA 57.183 30.769 0.00 0.00 32.01 2.92
93 94 7.992008 TGCATCTATGTAATCCATGCATATTG 58.008 34.615 0.00 0.00 42.98 1.90
154 155 3.701542 TCTCGCTGTCCAACTCATCTTAT 59.298 43.478 0.00 0.00 0.00 1.73
155 156 3.089284 TCTCGCTGTCCAACTCATCTTA 58.911 45.455 0.00 0.00 0.00 2.10
161 162 0.389166 CCACTCTCGCTGTCCAACTC 60.389 60.000 0.00 0.00 0.00 3.01
165 166 1.979155 CCTCCACTCTCGCTGTCCA 60.979 63.158 0.00 0.00 0.00 4.02
166 167 0.680280 TACCTCCACTCTCGCTGTCC 60.680 60.000 0.00 0.00 0.00 4.02
169 170 1.107114 ACATACCTCCACTCTCGCTG 58.893 55.000 0.00 0.00 0.00 5.18
172 173 3.868757 TCAAACATACCTCCACTCTCG 57.131 47.619 0.00 0.00 0.00 4.04
198 416 2.390938 CGTGAACTTCGCTAGTGAACA 58.609 47.619 14.70 8.93 37.12 3.18
200 418 1.933500 GCCGTGAACTTCGCTAGTGAA 60.934 52.381 17.45 17.45 37.12 3.18
214 432 1.597854 CCACTTTGAGCAGCCGTGA 60.598 57.895 0.00 0.00 0.00 4.35
219 437 0.599558 TCATTGCCACTTTGAGCAGC 59.400 50.000 0.00 0.00 40.73 5.25
225 443 1.067364 TGCAGTGTCATTGCCACTTTG 59.933 47.619 16.77 0.00 41.10 2.77
239 457 8.493547 CACATGTATTAAGACATCTATGCAGTG 58.506 37.037 12.70 11.69 37.99 3.66
260 478 3.695556 TGCATCTAAATGACCCACACATG 59.304 43.478 0.00 0.00 34.61 3.21
334 552 6.239036 CGGACACCTCTCATAACTTGATCATA 60.239 42.308 0.00 0.00 32.72 2.15
347 565 0.031585 CGTTTCACGGACACCTCTCA 59.968 55.000 0.00 0.00 38.08 3.27
491 921 7.335924 GGGTGTTGTAAGATGTTTGCTAGATTA 59.664 37.037 0.00 0.00 0.00 1.75
534 964 7.985476 TCGATCATCTTTCCTTTAAATGTTCC 58.015 34.615 0.00 0.00 0.00 3.62
657 1087 4.640201 CCTCTTTGAAGGTTGAAGTGTTCA 59.360 41.667 0.00 0.00 38.04 3.18
702 1133 5.181811 TGAGCCATGTGAGTTTAGTTTCATG 59.818 40.000 0.00 0.00 34.41 3.07
710 1141 4.973168 AGAAGTTGAGCCATGTGAGTTTA 58.027 39.130 0.00 0.00 0.00 2.01
711 1142 3.825328 AGAAGTTGAGCCATGTGAGTTT 58.175 40.909 0.00 0.00 0.00 2.66
987 1422 0.533085 TGGTCGTGAATTGCACCGAA 60.533 50.000 0.00 0.00 44.85 4.30
988 1423 0.533085 TTGGTCGTGAATTGCACCGA 60.533 50.000 0.00 0.00 44.85 4.69
1036 1482 2.433318 GTGGACTGCTGGAGACGC 60.433 66.667 2.24 0.00 0.00 5.19
1054 1511 0.941542 CCTCTCTCACTCGATCGACC 59.058 60.000 15.15 0.00 0.00 4.79
1088 1571 0.951558 CCCCGCCATTCTTTTATCCG 59.048 55.000 0.00 0.00 0.00 4.18
1382 1868 2.743928 CGCCACTTCTGAGCACCC 60.744 66.667 0.00 0.00 0.00 4.61
1552 2038 2.873094 TCAGAGTTAGTGGACGAGGA 57.127 50.000 0.00 0.00 0.00 3.71
1560 2046 3.418094 GTCGTCGTCATCAGAGTTAGTG 58.582 50.000 0.00 0.00 0.00 2.74
1641 2142 2.277084 GGATGTTAGGTGGTGCTTACG 58.723 52.381 0.00 0.00 0.00 3.18
1645 2146 2.726821 CAATGGATGTTAGGTGGTGCT 58.273 47.619 0.00 0.00 0.00 4.40
1647 2148 2.445427 TGCAATGGATGTTAGGTGGTG 58.555 47.619 0.00 0.00 0.00 4.17
1665 2166 6.919721 TGACAGGGAAAAGTACATATTTTGC 58.080 36.000 0.00 0.00 37.28 3.68
1674 2189 5.068591 ACATGGTTTTGACAGGGAAAAGTAC 59.931 40.000 0.00 0.00 0.00 2.73
1687 2297 4.059511 ACGACGATTACACATGGTTTTGA 58.940 39.130 0.00 0.00 0.00 2.69
1814 2442 1.001020 CCACAACATGGCCTGGCTA 60.001 57.895 19.68 13.97 43.24 3.93
1943 2571 5.199982 AGTAGAAGATGACCTTGAGGAGA 57.800 43.478 3.59 0.00 38.94 3.71
2106 2734 1.467678 CCGAGGCAGAGGATGGGTAG 61.468 65.000 0.00 0.00 0.00 3.18
2639 4117 1.805945 GGTCACGACAGCGATCACC 60.806 63.158 0.00 0.00 41.64 4.02
2732 4210 0.904865 ACTTCCTCCTCGTGATGGCA 60.905 55.000 0.00 0.00 0.00 4.92
2838 4316 1.228245 TGCTGGAGTGCTTGGAACC 60.228 57.895 0.00 0.00 0.00 3.62
2856 4334 4.021925 GCTCGCCCTGGAGTTGGT 62.022 66.667 0.00 0.00 36.41 3.67
2885 4363 2.125106 GCCATCACCGGACACTCC 60.125 66.667 9.46 0.00 0.00 3.85
2920 4398 2.802667 CGATCAAACGCCCGCTCTG 61.803 63.158 0.00 0.00 0.00 3.35
3053 4532 2.771943 TCAAGGATAACGCTCCCAATCT 59.228 45.455 0.00 0.00 35.79 2.40
3135 4614 9.562408 TCCCGCAATTATTTATTATAGTCAACA 57.438 29.630 0.00 0.00 0.00 3.33
3146 4625 9.487790 CAATGGTTTATTCCCGCAATTATTTAT 57.512 29.630 0.00 0.00 0.00 1.40
3147 4626 8.696374 TCAATGGTTTATTCCCGCAATTATTTA 58.304 29.630 0.00 0.00 0.00 1.40
3148 4627 7.560368 TCAATGGTTTATTCCCGCAATTATTT 58.440 30.769 0.00 0.00 0.00 1.40
3149 4628 7.118496 TCAATGGTTTATTCCCGCAATTATT 57.882 32.000 0.00 0.00 0.00 1.40
3150 4629 6.323739 ACTCAATGGTTTATTCCCGCAATTAT 59.676 34.615 0.00 0.00 0.00 1.28
3151 4630 5.654650 ACTCAATGGTTTATTCCCGCAATTA 59.345 36.000 0.00 0.00 0.00 1.40
3152 4631 4.466015 ACTCAATGGTTTATTCCCGCAATT 59.534 37.500 0.00 0.00 0.00 2.32
3153 4632 4.023291 ACTCAATGGTTTATTCCCGCAAT 58.977 39.130 0.00 0.00 0.00 3.56
3154 4633 3.426615 ACTCAATGGTTTATTCCCGCAA 58.573 40.909 0.00 0.00 0.00 4.85
3155 4634 3.080300 ACTCAATGGTTTATTCCCGCA 57.920 42.857 0.00 0.00 0.00 5.69
3156 4635 4.173256 CAAACTCAATGGTTTATTCCCGC 58.827 43.478 0.81 0.00 37.32 6.13
3157 4636 5.385509 ACAAACTCAATGGTTTATTCCCG 57.614 39.130 0.81 0.00 37.32 5.14
3158 4637 7.892609 AGTTACAAACTCAATGGTTTATTCCC 58.107 34.615 0.81 0.00 37.02 3.97
3159 4638 9.758651 AAAGTTACAAACTCAATGGTTTATTCC 57.241 29.630 0.00 0.00 41.91 3.01
3162 4641 9.528018 CACAAAGTTACAAACTCAATGGTTTAT 57.472 29.630 0.00 0.00 41.91 1.40
3163 4642 7.976734 CCACAAAGTTACAAACTCAATGGTTTA 59.023 33.333 0.00 0.00 41.91 2.01
3164 4643 6.816140 CCACAAAGTTACAAACTCAATGGTTT 59.184 34.615 0.00 0.00 41.91 3.27
3165 4644 6.153680 TCCACAAAGTTACAAACTCAATGGTT 59.846 34.615 12.30 0.00 41.91 3.67
3166 4645 5.654650 TCCACAAAGTTACAAACTCAATGGT 59.345 36.000 12.30 0.00 41.91 3.55
3167 4646 6.142818 TCCACAAAGTTACAAACTCAATGG 57.857 37.500 8.69 8.69 41.91 3.16
3168 4647 9.912634 ATAATCCACAAAGTTACAAACTCAATG 57.087 29.630 0.00 0.00 41.91 2.82
3182 4661 9.655769 CGATGAACTCAATTATAATCCACAAAG 57.344 33.333 0.00 0.00 0.00 2.77
3205 4684 4.772886 AGCCCCTGAATTTACTTACGAT 57.227 40.909 0.00 0.00 0.00 3.73
3219 4698 3.225104 ACAACATGCAATATAGCCCCTG 58.775 45.455 0.00 0.00 0.00 4.45
3221 4700 2.226437 CGACAACATGCAATATAGCCCC 59.774 50.000 0.00 0.00 0.00 5.80
3222 4701 2.878406 ACGACAACATGCAATATAGCCC 59.122 45.455 0.00 0.00 0.00 5.19
3225 4704 3.312146 TGCCACGACAACATGCAATATAG 59.688 43.478 0.00 0.00 0.00 1.31
3300 4817 1.230635 CGCCCAGTGAGTGGTCTTTG 61.231 60.000 5.46 0.00 46.37 2.77
3349 4866 2.497770 GGTCCATGCATGCAAGCC 59.502 61.111 26.68 19.17 0.00 4.35
3405 4922 4.339748 TGCTTGTATTTGTATGGCTGGAA 58.660 39.130 0.00 0.00 0.00 3.53
3406 4923 3.961849 TGCTTGTATTTGTATGGCTGGA 58.038 40.909 0.00 0.00 0.00 3.86
3407 4924 4.613944 CATGCTTGTATTTGTATGGCTGG 58.386 43.478 0.00 0.00 0.00 4.85
3408 4925 4.046462 GCATGCTTGTATTTGTATGGCTG 58.954 43.478 11.37 0.00 0.00 4.85
3410 4927 3.798337 GTGCATGCTTGTATTTGTATGGC 59.202 43.478 20.33 0.00 0.00 4.40
3411 4928 4.037021 CGTGCATGCTTGTATTTGTATGG 58.963 43.478 20.33 0.00 0.00 2.74
3412 4929 4.661125 ACGTGCATGCTTGTATTTGTATG 58.339 39.130 20.33 2.09 0.00 2.39
3413 4930 4.394610 TGACGTGCATGCTTGTATTTGTAT 59.605 37.500 20.33 0.00 0.00 2.29
3414 4931 3.748568 TGACGTGCATGCTTGTATTTGTA 59.251 39.130 20.33 0.00 0.00 2.41
3416 4933 2.910482 GTGACGTGCATGCTTGTATTTG 59.090 45.455 20.33 2.21 0.00 2.32
3417 4934 2.095263 GGTGACGTGCATGCTTGTATTT 60.095 45.455 20.33 0.00 0.00 1.40
3418 4935 1.468520 GGTGACGTGCATGCTTGTATT 59.531 47.619 20.33 0.00 0.00 1.89
3419 4936 1.086696 GGTGACGTGCATGCTTGTAT 58.913 50.000 20.33 0.00 0.00 2.29
3420 4937 0.953471 GGGTGACGTGCATGCTTGTA 60.953 55.000 20.33 0.00 0.00 2.41
3421 4938 2.260869 GGGTGACGTGCATGCTTGT 61.261 57.895 20.33 16.80 0.00 3.16
3422 4939 2.562912 GGGTGACGTGCATGCTTG 59.437 61.111 20.33 13.49 0.00 4.01
3423 4940 3.049674 CGGGTGACGTGCATGCTT 61.050 61.111 20.33 2.66 37.93 3.91
3424 4941 4.002506 TCGGGTGACGTGCATGCT 62.003 61.111 20.33 0.00 44.69 3.79
3425 4942 3.788766 GTCGGGTGACGTGCATGC 61.789 66.667 11.82 11.82 44.69 4.06
3433 4950 3.041940 CTGGCAACGTCGGGTGAC 61.042 66.667 0.00 0.00 41.91 3.67
3434 4951 4.980805 GCTGGCAACGTCGGGTGA 62.981 66.667 0.00 0.00 42.51 4.02
3436 4953 4.329545 ATGCTGGCAACGTCGGGT 62.330 61.111 0.00 0.00 42.51 5.28
3437 4954 3.803082 CATGCTGGCAACGTCGGG 61.803 66.667 0.00 0.00 42.51 5.14
3438 4955 3.049674 ACATGCTGGCAACGTCGG 61.050 61.111 0.00 0.00 42.51 4.79
3439 4956 2.174107 CACATGCTGGCAACGTCG 59.826 61.111 0.00 0.00 42.51 5.12
3442 4959 1.588824 ATGACCACATGCTGGCAACG 61.589 55.000 12.53 0.00 45.32 4.10
3443 4960 0.108992 CATGACCACATGCTGGCAAC 60.109 55.000 12.53 6.89 45.32 4.17
3445 4962 4.005902 CATGACCACATGCTGGCA 57.994 55.556 12.53 11.66 45.32 4.92
3453 4970 0.108186 GCACCTCGATCATGACCACA 60.108 55.000 0.00 0.00 0.00 4.17
3454 4971 0.108186 TGCACCTCGATCATGACCAC 60.108 55.000 0.00 0.00 0.00 4.16
3455 4972 0.612744 TTGCACCTCGATCATGACCA 59.387 50.000 0.00 0.00 0.00 4.02
3456 4973 1.737838 TTTGCACCTCGATCATGACC 58.262 50.000 0.00 0.00 0.00 4.02
3457 4974 2.289002 GGATTTGCACCTCGATCATGAC 59.711 50.000 0.00 0.00 0.00 3.06
3458 4975 2.093021 TGGATTTGCACCTCGATCATGA 60.093 45.455 0.00 0.00 0.00 3.07
3462 4979 2.843701 AGATGGATTTGCACCTCGATC 58.156 47.619 10.14 10.14 0.00 3.69
3464 4981 2.481276 CGTAGATGGATTTGCACCTCGA 60.481 50.000 0.00 0.00 0.00 4.04
3465 4982 1.860950 CGTAGATGGATTTGCACCTCG 59.139 52.381 0.00 0.00 0.00 4.63
3466 4983 1.599542 GCGTAGATGGATTTGCACCTC 59.400 52.381 0.00 0.00 0.00 3.85
3468 4985 0.663153 GGCGTAGATGGATTTGCACC 59.337 55.000 0.00 0.00 0.00 5.01
3469 4986 1.599542 GAGGCGTAGATGGATTTGCAC 59.400 52.381 0.00 0.00 0.00 4.57
3470 4987 1.486310 AGAGGCGTAGATGGATTTGCA 59.514 47.619 0.00 0.00 0.00 4.08
3471 4988 2.246719 AGAGGCGTAGATGGATTTGC 57.753 50.000 0.00 0.00 0.00 3.68
3472 4989 3.941483 ACAAAGAGGCGTAGATGGATTTG 59.059 43.478 0.00 0.00 33.70 2.32
3476 4993 2.094182 GTCACAAAGAGGCGTAGATGGA 60.094 50.000 0.00 0.00 0.00 3.41
3477 4994 2.093973 AGTCACAAAGAGGCGTAGATGG 60.094 50.000 0.00 0.00 0.00 3.51
3478 4995 2.926200 CAGTCACAAAGAGGCGTAGATG 59.074 50.000 0.00 0.00 0.00 2.90
3481 4998 2.029828 ACTCAGTCACAAAGAGGCGTAG 60.030 50.000 0.00 0.00 33.76 3.51
3482 4999 1.961394 ACTCAGTCACAAAGAGGCGTA 59.039 47.619 0.00 0.00 33.76 4.42
3484 5001 2.724977 TACTCAGTCACAAAGAGGCG 57.275 50.000 0.00 0.00 33.76 5.52
3486 5003 9.706691 TTAGTTAATTACTCAGTCACAAAGAGG 57.293 33.333 0.00 0.00 38.33 3.69
3492 5009 9.542462 GCCATATTAGTTAATTACTCAGTCACA 57.458 33.333 0.00 0.00 38.33 3.58
3493 5010 8.989980 GGCCATATTAGTTAATTACTCAGTCAC 58.010 37.037 0.00 0.00 38.33 3.67
3494 5011 8.710239 TGGCCATATTAGTTAATTACTCAGTCA 58.290 33.333 0.00 0.00 38.33 3.41
3495 5012 9.726438 ATGGCCATATTAGTTAATTACTCAGTC 57.274 33.333 19.18 0.00 38.33 3.51
3499 5016 9.014297 AGCAATGGCCATATTAGTTAATTACTC 57.986 33.333 21.15 0.00 42.56 2.59
3500 5017 8.940397 AGCAATGGCCATATTAGTTAATTACT 57.060 30.769 21.15 0.00 42.56 2.24
3502 5019 9.461312 CCTAGCAATGGCCATATTAGTTAATTA 57.539 33.333 21.15 0.00 42.56 1.40
3504 5021 6.378280 GCCTAGCAATGGCCATATTAGTTAAT 59.622 38.462 21.15 0.00 44.32 1.40
3506 5023 5.253330 GCCTAGCAATGGCCATATTAGTTA 58.747 41.667 21.15 10.65 44.32 2.24
3508 5025 3.690460 GCCTAGCAATGGCCATATTAGT 58.310 45.455 21.15 0.00 44.32 2.24
3517 5034 1.429423 GTTGACGCCTAGCAATGGC 59.571 57.895 4.80 4.80 46.42 4.40
3518 5035 1.705337 CGGTTGACGCCTAGCAATGG 61.705 60.000 0.00 0.00 34.82 3.16
3519 5036 0.739462 TCGGTTGACGCCTAGCAATG 60.739 55.000 0.00 0.00 43.86 2.82
3520 5037 0.739813 GTCGGTTGACGCCTAGCAAT 60.740 55.000 0.00 0.00 43.86 3.56
3521 5038 1.373748 GTCGGTTGACGCCTAGCAA 60.374 57.895 0.00 0.00 43.86 3.91
3530 5047 3.433615 CCAGAAGAAATCAGTCGGTTGAC 59.566 47.826 0.00 0.00 45.86 3.18
3531 5048 3.323691 TCCAGAAGAAATCAGTCGGTTGA 59.676 43.478 0.00 0.00 0.00 3.18
3532 5049 3.664107 TCCAGAAGAAATCAGTCGGTTG 58.336 45.455 0.00 0.00 0.00 3.77
3533 5050 4.351874 TTCCAGAAGAAATCAGTCGGTT 57.648 40.909 0.00 0.00 0.00 4.44
3534 5051 4.020218 TGATTCCAGAAGAAATCAGTCGGT 60.020 41.667 0.00 0.00 38.21 4.69
3535 5052 4.507710 TGATTCCAGAAGAAATCAGTCGG 58.492 43.478 0.00 0.00 38.21 4.79
3536 5053 4.033817 GCTGATTCCAGAAGAAATCAGTCG 59.966 45.833 20.24 3.74 43.02 4.18
3538 5055 4.268359 GGCTGATTCCAGAAGAAATCAGT 58.732 43.478 20.24 0.00 43.02 3.41
3539 5056 3.311871 CGGCTGATTCCAGAAGAAATCAG 59.688 47.826 16.83 16.83 43.02 2.90
3540 5057 3.273434 CGGCTGATTCCAGAAGAAATCA 58.727 45.455 0.00 0.00 43.02 2.57
3541 5058 2.615912 CCGGCTGATTCCAGAAGAAATC 59.384 50.000 0.00 0.00 43.02 2.17
3542 5059 2.648059 CCGGCTGATTCCAGAAGAAAT 58.352 47.619 0.00 0.00 43.02 2.17
3543 5060 1.340017 CCCGGCTGATTCCAGAAGAAA 60.340 52.381 0.00 0.00 43.02 2.52
3544 5061 0.253044 CCCGGCTGATTCCAGAAGAA 59.747 55.000 0.00 0.00 43.02 2.52
3545 5062 0.909610 ACCCGGCTGATTCCAGAAGA 60.910 55.000 0.00 0.00 43.02 2.87
3546 5063 0.035056 AACCCGGCTGATTCCAGAAG 60.035 55.000 0.00 0.00 43.02 2.85
3547 5064 0.322456 CAACCCGGCTGATTCCAGAA 60.322 55.000 0.00 0.00 43.02 3.02
3548 5065 1.198094 TCAACCCGGCTGATTCCAGA 61.198 55.000 0.00 0.00 43.02 3.86
3549 5066 0.107017 ATCAACCCGGCTGATTCCAG 60.107 55.000 10.62 0.00 43.22 3.86
3550 5067 1.140852 CTATCAACCCGGCTGATTCCA 59.859 52.381 19.01 4.63 35.21 3.53
3551 5068 1.884235 CTATCAACCCGGCTGATTCC 58.116 55.000 19.01 0.00 35.21 3.01
3552 5069 1.230324 GCTATCAACCCGGCTGATTC 58.770 55.000 19.01 10.24 35.21 2.52
3553 5070 0.179018 GGCTATCAACCCGGCTGATT 60.179 55.000 19.01 7.08 35.21 2.57
3554 5071 1.451936 GGCTATCAACCCGGCTGAT 59.548 57.895 18.16 18.16 37.32 2.90
3555 5072 2.908015 GGCTATCAACCCGGCTGA 59.092 61.111 6.90 6.90 0.00 4.26
3556 5073 2.588877 CGGCTATCAACCCGGCTG 60.589 66.667 0.00 0.00 40.79 4.85
3561 5078 1.270358 GGATCAGACGGCTATCAACCC 60.270 57.143 0.00 0.00 0.00 4.11
3562 5079 1.603172 CGGATCAGACGGCTATCAACC 60.603 57.143 0.00 0.00 0.00 3.77
3563 5080 1.067212 ACGGATCAGACGGCTATCAAC 59.933 52.381 0.00 0.00 35.23 3.18
3564 5081 1.337071 GACGGATCAGACGGCTATCAA 59.663 52.381 0.00 0.00 36.18 2.57
3565 5082 0.952280 GACGGATCAGACGGCTATCA 59.048 55.000 0.00 0.00 36.18 2.15
3566 5083 0.952280 TGACGGATCAGACGGCTATC 59.048 55.000 0.00 0.00 40.77 2.08
3567 5084 1.270826 CATGACGGATCAGACGGCTAT 59.729 52.381 0.00 0.00 40.77 2.97
3568 5085 0.668535 CATGACGGATCAGACGGCTA 59.331 55.000 0.00 0.00 40.77 3.93
3569 5086 1.037579 TCATGACGGATCAGACGGCT 61.038 55.000 0.00 0.00 40.77 5.52
3570 5087 0.032678 ATCATGACGGATCAGACGGC 59.967 55.000 0.00 0.00 38.57 5.68
3571 5088 1.611006 AGATCATGACGGATCAGACGG 59.389 52.381 0.00 0.00 44.89 4.79
3572 5089 2.606551 CCAGATCATGACGGATCAGACG 60.607 54.545 0.00 0.00 44.89 4.18
3573 5090 2.625314 TCCAGATCATGACGGATCAGAC 59.375 50.000 0.00 0.00 44.89 3.51
3574 5091 2.949447 TCCAGATCATGACGGATCAGA 58.051 47.619 0.00 0.16 44.89 3.27
3575 5092 3.586892 CATCCAGATCATGACGGATCAG 58.413 50.000 16.58 6.80 44.89 2.90
3576 5093 2.301009 CCATCCAGATCATGACGGATCA 59.699 50.000 16.58 0.00 44.89 2.92
3577 5094 2.564504 TCCATCCAGATCATGACGGATC 59.435 50.000 16.58 3.48 43.21 3.36
3578 5095 2.613129 TCCATCCAGATCATGACGGAT 58.387 47.619 14.55 14.55 38.84 4.18
3579 5096 2.086610 TCCATCCAGATCATGACGGA 57.913 50.000 11.63 11.63 0.00 4.69
3580 5097 2.874701 GTTTCCATCCAGATCATGACGG 59.125 50.000 0.00 0.00 0.00 4.79
3594 5111 5.698104 TGAATCAGATGGCTATGTTTCCAT 58.302 37.500 0.00 0.00 45.17 3.41
3595 5112 5.114764 TGAATCAGATGGCTATGTTTCCA 57.885 39.130 0.00 0.00 36.70 3.53
3596 5113 5.128919 ACTGAATCAGATGGCTATGTTTCC 58.871 41.667 18.20 0.00 35.18 3.13
3597 5114 5.819379 TGACTGAATCAGATGGCTATGTTTC 59.181 40.000 18.20 0.00 35.18 2.78
3598 5115 5.748402 TGACTGAATCAGATGGCTATGTTT 58.252 37.500 18.20 0.00 35.18 2.83
3600 5117 5.363562 TTGACTGAATCAGATGGCTATGT 57.636 39.130 18.20 0.00 38.99 2.29
3602 5119 4.813161 CGTTTGACTGAATCAGATGGCTAT 59.187 41.667 18.20 0.00 38.99 2.97
3605 5122 2.476854 GCGTTTGACTGAATCAGATGGC 60.477 50.000 18.20 7.38 38.99 4.40
3606 5123 2.743664 TGCGTTTGACTGAATCAGATGG 59.256 45.455 18.20 1.27 38.99 3.51
3607 5124 3.187022 TGTGCGTTTGACTGAATCAGATG 59.813 43.478 18.20 0.86 38.99 2.90
3608 5125 3.402110 TGTGCGTTTGACTGAATCAGAT 58.598 40.909 18.20 0.93 38.99 2.90
3609 5126 2.802247 CTGTGCGTTTGACTGAATCAGA 59.198 45.455 18.20 0.00 38.99 3.27
3611 5128 2.543848 GTCTGTGCGTTTGACTGAATCA 59.456 45.455 0.00 0.00 34.65 2.57
3612 5129 2.410262 CGTCTGTGCGTTTGACTGAATC 60.410 50.000 0.00 0.00 0.00 2.52
3613 5130 1.526887 CGTCTGTGCGTTTGACTGAAT 59.473 47.619 0.00 0.00 0.00 2.57
3614 5131 0.927537 CGTCTGTGCGTTTGACTGAA 59.072 50.000 0.00 0.00 0.00 3.02
3615 5132 1.487452 GCGTCTGTGCGTTTGACTGA 61.487 55.000 0.00 0.00 0.00 3.41
3616 5133 1.083401 GCGTCTGTGCGTTTGACTG 60.083 57.895 0.00 0.00 0.00 3.51
3617 5134 1.227263 AGCGTCTGTGCGTTTGACT 60.227 52.632 0.00 0.00 40.67 3.41
3619 5136 2.881266 GCAGCGTCTGTGCGTTTGA 61.881 57.895 8.32 0.00 40.67 2.69
3620 5137 2.378945 AAGCAGCGTCTGTGCGTTTG 62.379 55.000 8.32 0.00 46.06 2.93
3621 5138 2.105960 GAAGCAGCGTCTGTGCGTTT 62.106 55.000 0.37 0.00 46.06 3.60
3622 5139 2.588877 AAGCAGCGTCTGTGCGTT 60.589 55.556 8.32 0.00 46.06 4.84
3623 5140 3.038417 GAAGCAGCGTCTGTGCGT 61.038 61.111 0.37 0.07 46.06 5.24
3624 5141 4.126390 CGAAGCAGCGTCTGTGCG 62.126 66.667 6.77 6.34 46.06 5.34
3628 5145 0.941463 ACAGAACGAAGCAGCGTCTG 60.941 55.000 18.97 18.97 44.86 3.51
3630 5147 1.618640 GGACAGAACGAAGCAGCGTC 61.619 60.000 4.34 0.00 44.86 5.19
3632 5149 2.383527 GGGACAGAACGAAGCAGCG 61.384 63.158 0.00 0.00 37.29 5.18
3633 5150 1.301716 TGGGACAGAACGAAGCAGC 60.302 57.895 0.00 0.00 0.00 5.25
3634 5151 1.284982 CGTGGGACAGAACGAAGCAG 61.285 60.000 0.00 0.00 41.80 4.24
3636 5153 1.282930 GACGTGGGACAGAACGAAGC 61.283 60.000 0.00 0.00 41.80 3.86
3637 5154 1.002250 CGACGTGGGACAGAACGAAG 61.002 60.000 0.00 0.00 41.80 3.79
3638 5155 1.008194 CGACGTGGGACAGAACGAA 60.008 57.895 0.00 0.00 41.80 3.85
3639 5156 2.640989 CGACGTGGGACAGAACGA 59.359 61.111 0.00 0.00 41.80 3.85
3640 5157 3.103911 GCGACGTGGGACAGAACG 61.104 66.667 0.00 0.00 41.80 3.95
3657 5174 3.773630 CACCTACGTGCGTTGCGG 61.774 66.667 1.66 4.44 32.04 5.69
3658 5175 3.033764 ACACCTACGTGCGTTGCG 61.034 61.111 1.66 0.00 44.40 4.85
3659 5176 1.886861 CTCACACCTACGTGCGTTGC 61.887 60.000 1.66 0.00 44.40 4.17
3660 5177 0.318360 TCTCACACCTACGTGCGTTG 60.318 55.000 1.66 0.49 44.40 4.10
3661 5178 0.318445 GTCTCACACCTACGTGCGTT 60.318 55.000 1.66 0.00 44.40 4.84
3663 5180 1.443872 GGTCTCACACCTACGTGCG 60.444 63.158 0.00 0.00 44.40 5.34
3664 5181 0.246635 ATGGTCTCACACCTACGTGC 59.753 55.000 0.00 0.00 46.98 5.34
3665 5182 1.467543 CGATGGTCTCACACCTACGTG 60.468 57.143 0.00 0.00 46.98 4.49
3666 5183 0.809385 CGATGGTCTCACACCTACGT 59.191 55.000 0.00 0.00 46.98 3.57
3667 5184 0.525668 GCGATGGTCTCACACCTACG 60.526 60.000 0.00 0.00 46.98 3.51
3668 5185 0.179108 GGCGATGGTCTCACACCTAC 60.179 60.000 0.00 0.00 46.98 3.18
3669 5186 0.613572 TGGCGATGGTCTCACACCTA 60.614 55.000 0.00 0.00 46.98 3.08
3670 5187 1.913262 TGGCGATGGTCTCACACCT 60.913 57.895 0.00 0.00 46.98 4.00
3672 5189 1.741770 GGTGGCGATGGTCTCACAC 60.742 63.158 0.00 0.00 33.10 3.82
3673 5190 2.662596 GGTGGCGATGGTCTCACA 59.337 61.111 0.00 0.00 32.29 3.58
3674 5191 2.125106 GGGTGGCGATGGTCTCAC 60.125 66.667 0.00 0.00 0.00 3.51
3675 5192 3.770040 CGGGTGGCGATGGTCTCA 61.770 66.667 0.00 0.00 0.00 3.27
3676 5193 3.458163 TCGGGTGGCGATGGTCTC 61.458 66.667 0.00 0.00 0.00 3.36
3677 5194 3.771160 GTCGGGTGGCGATGGTCT 61.771 66.667 0.00 0.00 0.00 3.85
3678 5195 3.718210 GAGTCGGGTGGCGATGGTC 62.718 68.421 0.00 0.00 0.00 4.02
3679 5196 3.771160 GAGTCGGGTGGCGATGGT 61.771 66.667 0.00 0.00 0.00 3.55
3680 5197 4.873129 CGAGTCGGGTGGCGATGG 62.873 72.222 4.10 0.00 0.00 3.51
3698 5215 2.031508 GCTACTTCTAGCTACTGCGGAG 60.032 54.545 0.85 0.85 42.11 4.63
3699 5216 1.948145 GCTACTTCTAGCTACTGCGGA 59.052 52.381 0.00 0.00 42.11 5.54
3700 5217 1.001158 GGCTACTTCTAGCTACTGCGG 60.001 57.143 0.00 0.00 44.46 5.69
3701 5218 1.334239 CGGCTACTTCTAGCTACTGCG 60.334 57.143 0.00 0.00 44.46 5.18
3702 5219 1.948145 TCGGCTACTTCTAGCTACTGC 59.052 52.381 0.00 0.00 44.46 4.40
3703 5220 3.610585 GCATCGGCTACTTCTAGCTACTG 60.611 52.174 0.00 0.00 44.46 2.74
3704 5221 2.554893 GCATCGGCTACTTCTAGCTACT 59.445 50.000 0.00 0.00 44.46 2.57
3705 5222 2.936316 GCATCGGCTACTTCTAGCTAC 58.064 52.381 0.00 0.00 44.46 3.58
3718 5235 4.838152 TCGGGAGCAAGCATCGGC 62.838 66.667 0.00 0.00 41.61 5.54
3719 5236 2.109799 ATCGGGAGCAAGCATCGG 59.890 61.111 0.00 0.00 0.00 4.18
3720 5237 2.249535 CCATCGGGAGCAAGCATCG 61.250 63.158 0.00 0.00 35.59 3.84
3721 5238 1.146930 TCCATCGGGAGCAAGCATC 59.853 57.895 0.00 0.00 38.64 3.91
3722 5239 3.323622 TCCATCGGGAGCAAGCAT 58.676 55.556 0.00 0.00 38.64 3.79
3730 5247 2.498941 GCGGTCATCTCCATCGGGA 61.499 63.158 0.00 0.00 42.29 5.14
3731 5248 2.029666 GCGGTCATCTCCATCGGG 59.970 66.667 0.00 0.00 0.00 5.14
3732 5249 1.592669 GTGCGGTCATCTCCATCGG 60.593 63.158 0.00 0.00 0.00 4.18
3733 5250 1.592669 GGTGCGGTCATCTCCATCG 60.593 63.158 0.00 0.00 0.00 3.84
3734 5251 0.811616 GTGGTGCGGTCATCTCCATC 60.812 60.000 0.00 0.00 0.00 3.51
3735 5252 1.221840 GTGGTGCGGTCATCTCCAT 59.778 57.895 0.00 0.00 0.00 3.41
3736 5253 1.888436 GAGTGGTGCGGTCATCTCCA 61.888 60.000 0.00 0.00 0.00 3.86
3737 5254 1.153549 GAGTGGTGCGGTCATCTCC 60.154 63.158 0.00 0.00 0.00 3.71
3738 5255 1.517257 CGAGTGGTGCGGTCATCTC 60.517 63.158 0.00 0.00 0.00 2.75
3739 5256 1.532604 TTCGAGTGGTGCGGTCATCT 61.533 55.000 0.00 0.00 0.00 2.90
3740 5257 0.460284 ATTCGAGTGGTGCGGTCATC 60.460 55.000 0.00 0.00 0.00 2.92
3741 5258 0.460284 GATTCGAGTGGTGCGGTCAT 60.460 55.000 0.00 0.00 0.00 3.06
3742 5259 1.080093 GATTCGAGTGGTGCGGTCA 60.080 57.895 0.00 0.00 0.00 4.02
3743 5260 2.158959 CGATTCGAGTGGTGCGGTC 61.159 63.158 0.00 0.00 0.00 4.79
3744 5261 2.126071 CGATTCGAGTGGTGCGGT 60.126 61.111 0.00 0.00 0.00 5.68
3745 5262 3.554692 GCGATTCGAGTGGTGCGG 61.555 66.667 10.88 0.00 0.00 5.69
3746 5263 3.554692 GGCGATTCGAGTGGTGCG 61.555 66.667 10.88 0.00 0.00 5.34
3747 5264 3.195698 GGGCGATTCGAGTGGTGC 61.196 66.667 10.88 0.00 0.00 5.01
3748 5265 2.511600 GGGGCGATTCGAGTGGTG 60.512 66.667 10.88 0.00 0.00 4.17
3749 5266 4.143333 CGGGGCGATTCGAGTGGT 62.143 66.667 10.88 0.00 0.00 4.16
3751 5268 4.812476 TGCGGGGCGATTCGAGTG 62.812 66.667 10.88 0.00 0.00 3.51
3752 5269 4.514577 CTGCGGGGCGATTCGAGT 62.515 66.667 10.88 0.00 0.00 4.18
3767 5284 2.786539 TTACTCGGGTGCTGCTGCTG 62.787 60.000 17.00 0.77 40.48 4.41
3768 5285 1.903877 ATTACTCGGGTGCTGCTGCT 61.904 55.000 17.00 0.00 40.48 4.24
3769 5286 1.450312 ATTACTCGGGTGCTGCTGC 60.450 57.895 8.89 8.89 40.20 5.25
3770 5287 1.709147 GCATTACTCGGGTGCTGCTG 61.709 60.000 14.69 0.00 36.02 4.41
3771 5288 1.450312 GCATTACTCGGGTGCTGCT 60.450 57.895 14.69 0.00 36.02 4.24
3772 5289 1.450312 AGCATTACTCGGGTGCTGC 60.450 57.895 14.27 14.27 46.60 5.25
3773 5290 4.941609 AGCATTACTCGGGTGCTG 57.058 55.556 0.00 0.00 46.60 4.41
3775 5292 1.666189 GAGAAAGCATTACTCGGGTGC 59.334 52.381 0.00 0.00 39.10 5.01
3776 5293 1.927174 CGAGAAAGCATTACTCGGGTG 59.073 52.381 0.00 0.00 46.10 4.61
3777 5294 2.295253 CGAGAAAGCATTACTCGGGT 57.705 50.000 12.57 0.00 46.10 5.28
3781 5298 2.275318 AGCAGCGAGAAAGCATTACTC 58.725 47.619 0.00 0.00 40.15 2.59
3782 5299 2.275318 GAGCAGCGAGAAAGCATTACT 58.725 47.619 0.00 0.00 40.15 2.24
3783 5300 1.328986 GGAGCAGCGAGAAAGCATTAC 59.671 52.381 0.00 0.00 40.15 1.89
3784 5301 1.656652 GGAGCAGCGAGAAAGCATTA 58.343 50.000 0.00 0.00 40.15 1.90
3785 5302 1.364626 CGGAGCAGCGAGAAAGCATT 61.365 55.000 0.00 0.00 40.15 3.56
3786 5303 1.812922 CGGAGCAGCGAGAAAGCAT 60.813 57.895 0.00 0.00 40.15 3.79
3787 5304 2.433145 CGGAGCAGCGAGAAAGCA 60.433 61.111 0.00 0.00 40.15 3.91
3788 5305 3.191539 CCGGAGCAGCGAGAAAGC 61.192 66.667 0.00 0.00 37.41 3.51
3789 5306 1.079819 TTCCGGAGCAGCGAGAAAG 60.080 57.895 3.34 0.00 0.00 2.62
3790 5307 1.079819 CTTCCGGAGCAGCGAGAAA 60.080 57.895 3.34 0.00 0.00 2.52
3791 5308 2.573869 CTTCCGGAGCAGCGAGAA 59.426 61.111 3.34 0.00 0.00 2.87
3792 5309 3.452786 CCTTCCGGAGCAGCGAGA 61.453 66.667 3.34 0.00 0.00 4.04
3793 5310 4.521062 CCCTTCCGGAGCAGCGAG 62.521 72.222 3.34 0.00 0.00 5.03
3797 5314 4.785453 GGTGCCCTTCCGGAGCAG 62.785 72.222 16.47 6.64 37.23 4.24
3811 5328 3.434319 GCTGTGATGCACCCGGTG 61.434 66.667 13.71 13.71 36.51 4.94
3812 5329 3.490031 TTGCTGTGATGCACCCGGT 62.490 57.895 0.00 0.00 43.20 5.28
3813 5330 2.672651 TTGCTGTGATGCACCCGG 60.673 61.111 0.00 0.00 43.20 5.73
3814 5331 1.588824 ATGTTGCTGTGATGCACCCG 61.589 55.000 0.00 0.00 43.20 5.28
3815 5332 0.171903 GATGTTGCTGTGATGCACCC 59.828 55.000 0.00 0.00 43.20 4.61
3816 5333 0.883153 TGATGTTGCTGTGATGCACC 59.117 50.000 0.00 0.00 43.20 5.01
3817 5334 2.592194 CTTGATGTTGCTGTGATGCAC 58.408 47.619 0.00 0.00 43.20 4.57
3818 5335 1.068125 GCTTGATGTTGCTGTGATGCA 60.068 47.619 0.00 0.00 41.65 3.96
3819 5336 1.625616 GCTTGATGTTGCTGTGATGC 58.374 50.000 0.00 0.00 0.00 3.91
3820 5337 1.466866 CGGCTTGATGTTGCTGTGATG 60.467 52.381 0.00 0.00 0.00 3.07
3821 5338 0.806868 CGGCTTGATGTTGCTGTGAT 59.193 50.000 0.00 0.00 0.00 3.06
3822 5339 1.855213 GCGGCTTGATGTTGCTGTGA 61.855 55.000 0.00 0.00 37.82 3.58
3823 5340 1.443194 GCGGCTTGATGTTGCTGTG 60.443 57.895 0.00 0.00 37.82 3.66
3824 5341 1.246056 ATGCGGCTTGATGTTGCTGT 61.246 50.000 0.00 0.00 37.82 4.40
3825 5342 0.108992 AATGCGGCTTGATGTTGCTG 60.109 50.000 0.00 0.00 38.49 4.41
3826 5343 0.108992 CAATGCGGCTTGATGTTGCT 60.109 50.000 0.00 0.00 0.00 3.91
3827 5344 0.388907 ACAATGCGGCTTGATGTTGC 60.389 50.000 15.68 0.00 0.00 4.17
3828 5345 1.621107 GACAATGCGGCTTGATGTTG 58.379 50.000 15.68 7.74 0.00 3.33
3829 5346 0.168788 CGACAATGCGGCTTGATGTT 59.831 50.000 15.68 0.00 0.00 2.71
3830 5347 1.647545 CCGACAATGCGGCTTGATGT 61.648 55.000 15.68 8.98 45.38 3.06
3831 5348 1.063006 CCGACAATGCGGCTTGATG 59.937 57.895 15.68 6.34 45.38 3.07
3832 5349 3.501396 CCGACAATGCGGCTTGAT 58.499 55.556 15.68 4.13 45.38 2.57
3839 5356 0.877649 ATAGCAGCTCCGACAATGCG 60.878 55.000 0.00 0.00 43.41 4.73
3840 5357 1.003116 CAATAGCAGCTCCGACAATGC 60.003 52.381 0.00 0.00 38.97 3.56
3841 5358 1.600957 CCAATAGCAGCTCCGACAATG 59.399 52.381 0.00 0.00 0.00 2.82
3842 5359 1.486310 TCCAATAGCAGCTCCGACAAT 59.514 47.619 0.00 0.00 0.00 2.71
3843 5360 0.901827 TCCAATAGCAGCTCCGACAA 59.098 50.000 0.00 0.00 0.00 3.18
3844 5361 0.461548 CTCCAATAGCAGCTCCGACA 59.538 55.000 0.00 0.00 0.00 4.35
3845 5362 3.280920 CTCCAATAGCAGCTCCGAC 57.719 57.895 0.00 0.00 0.00 4.79
3855 5372 3.491104 GGAGTGTCGTTAGGCTCCAATAG 60.491 52.174 0.00 0.00 45.00 1.73
3856 5373 2.429610 GGAGTGTCGTTAGGCTCCAATA 59.570 50.000 0.00 0.00 45.00 1.90
3857 5374 1.207329 GGAGTGTCGTTAGGCTCCAAT 59.793 52.381 0.00 0.00 45.00 3.16
3858 5375 0.606604 GGAGTGTCGTTAGGCTCCAA 59.393 55.000 0.00 0.00 45.00 3.53
3859 5376 2.273908 GGAGTGTCGTTAGGCTCCA 58.726 57.895 0.00 0.00 45.00 3.86
3860 5377 0.896226 AAGGAGTGTCGTTAGGCTCC 59.104 55.000 0.00 0.00 45.75 4.70
3861 5378 1.997669 CAAGGAGTGTCGTTAGGCTC 58.002 55.000 0.00 0.00 0.00 4.70
3862 5379 0.037232 GCAAGGAGTGTCGTTAGGCT 60.037 55.000 0.00 0.00 0.00 4.58
3863 5380 0.320421 TGCAAGGAGTGTCGTTAGGC 60.320 55.000 0.00 0.00 0.00 3.93
3864 5381 1.714794 CTGCAAGGAGTGTCGTTAGG 58.285 55.000 0.00 0.00 0.00 2.69
3865 5382 1.071605 GCTGCAAGGAGTGTCGTTAG 58.928 55.000 0.00 0.00 0.00 2.34
3866 5383 0.391228 TGCTGCAAGGAGTGTCGTTA 59.609 50.000 0.00 0.00 0.00 3.18
3867 5384 1.146041 TGCTGCAAGGAGTGTCGTT 59.854 52.632 0.00 0.00 0.00 3.85
3868 5385 1.595382 GTGCTGCAAGGAGTGTCGT 60.595 57.895 2.77 0.00 31.73 4.34
3869 5386 2.320587 GGTGCTGCAAGGAGTGTCG 61.321 63.158 2.77 0.00 31.73 4.35
3870 5387 2.320587 CGGTGCTGCAAGGAGTGTC 61.321 63.158 2.77 0.00 31.73 3.67
3871 5388 2.281070 CGGTGCTGCAAGGAGTGT 60.281 61.111 2.77 0.00 31.73 3.55
3872 5389 2.031012 TCGGTGCTGCAAGGAGTG 59.969 61.111 2.77 0.00 31.73 3.51
3873 5390 2.031163 GTCGGTGCTGCAAGGAGT 59.969 61.111 2.77 0.00 31.73 3.85
3874 5391 3.114616 CGTCGGTGCTGCAAGGAG 61.115 66.667 2.77 0.00 31.73 3.69
3875 5392 4.680237 CCGTCGGTGCTGCAAGGA 62.680 66.667 2.77 1.28 0.00 3.36
3876 5393 4.680237 TCCGTCGGTGCTGCAAGG 62.680 66.667 11.88 3.50 0.00 3.61
3877 5394 3.114616 CTCCGTCGGTGCTGCAAG 61.115 66.667 11.88 1.43 0.00 4.01
3878 5395 4.680237 CCTCCGTCGGTGCTGCAA 62.680 66.667 11.88 0.00 0.00 4.08
3899 5416 4.030452 GTGCTGCAACTGGCCGAC 62.030 66.667 2.77 0.00 43.89 4.79
3920 5437 3.950794 TTGCCTGCTACGAAGGGCG 62.951 63.158 0.00 0.00 46.72 6.13
3921 5438 2.046314 TTGCCTGCTACGAAGGGC 60.046 61.111 0.00 0.00 44.31 5.19
3922 5439 0.605319 TTGTTGCCTGCTACGAAGGG 60.605 55.000 0.00 0.00 35.17 3.95
3923 5440 1.234821 TTTGTTGCCTGCTACGAAGG 58.765 50.000 2.83 0.00 37.91 3.46
3924 5441 3.042887 GTTTTTGTTGCCTGCTACGAAG 58.957 45.455 6.51 0.00 0.00 3.79
3925 5442 2.223618 GGTTTTTGTTGCCTGCTACGAA 60.224 45.455 2.83 2.83 0.00 3.85
3926 5443 1.335496 GGTTTTTGTTGCCTGCTACGA 59.665 47.619 0.00 0.00 0.00 3.43
3927 5444 1.601914 GGGTTTTTGTTGCCTGCTACG 60.602 52.381 0.00 0.00 0.00 3.51
3928 5445 1.410882 TGGGTTTTTGTTGCCTGCTAC 59.589 47.619 0.00 0.00 0.00 3.58
3929 5446 1.410882 GTGGGTTTTTGTTGCCTGCTA 59.589 47.619 0.00 0.00 0.00 3.49
3930 5447 0.177836 GTGGGTTTTTGTTGCCTGCT 59.822 50.000 0.00 0.00 0.00 4.24
3931 5448 1.151172 CGTGGGTTTTTGTTGCCTGC 61.151 55.000 0.00 0.00 0.00 4.85
3932 5449 0.174617 ACGTGGGTTTTTGTTGCCTG 59.825 50.000 0.00 0.00 0.00 4.85
3933 5450 0.174617 CACGTGGGTTTTTGTTGCCT 59.825 50.000 7.95 0.00 0.00 4.75
3934 5451 0.108567 ACACGTGGGTTTTTGTTGCC 60.109 50.000 21.57 0.00 0.00 4.52
3935 5452 1.391826 CAACACGTGGGTTTTTGTTGC 59.608 47.619 21.57 0.00 41.60 4.17
3937 5454 1.000955 TGCAACACGTGGGTTTTTGTT 59.999 42.857 21.57 0.00 32.34 2.83
3938 5455 0.603569 TGCAACACGTGGGTTTTTGT 59.396 45.000 21.57 0.00 0.00 2.83
3939 5456 1.933247 ATGCAACACGTGGGTTTTTG 58.067 45.000 21.57 15.27 0.00 2.44
3940 5457 2.275318 CAATGCAACACGTGGGTTTTT 58.725 42.857 21.57 0.92 0.00 1.94
3941 5458 1.933247 CAATGCAACACGTGGGTTTT 58.067 45.000 21.57 1.35 0.00 2.43
3942 5459 0.529555 GCAATGCAACACGTGGGTTT 60.530 50.000 21.57 1.76 0.00 3.27
3943 5460 1.067250 GCAATGCAACACGTGGGTT 59.933 52.632 21.57 2.60 0.00 4.11
3944 5461 2.727544 GCAATGCAACACGTGGGT 59.272 55.556 21.57 4.09 0.00 4.51
3945 5462 2.049248 GGCAATGCAACACGTGGG 60.049 61.111 21.57 12.76 0.00 4.61
3946 5463 1.009903 CATGGCAATGCAACACGTGG 61.010 55.000 21.57 3.72 0.00 4.94
3947 5464 0.318869 ACATGGCAATGCAACACGTG 60.319 50.000 15.48 15.48 37.29 4.49
3948 5465 0.039256 GACATGGCAATGCAACACGT 60.039 50.000 7.79 0.00 37.29 4.49
3949 5466 1.066656 CGACATGGCAATGCAACACG 61.067 55.000 7.79 2.21 37.29 4.49
3950 5467 1.346378 GCGACATGGCAATGCAACAC 61.346 55.000 7.79 0.00 37.29 3.32
3951 5468 1.080637 GCGACATGGCAATGCAACA 60.081 52.632 7.79 0.00 37.29 3.33
3952 5469 2.153945 CGCGACATGGCAATGCAAC 61.154 57.895 7.79 0.00 37.29 4.17
3953 5470 2.178769 CGCGACATGGCAATGCAA 59.821 55.556 7.79 0.00 37.29 4.08
3954 5471 4.479542 GCGCGACATGGCAATGCA 62.480 61.111 12.10 0.00 37.29 3.96
3955 5472 4.479542 TGCGCGACATGGCAATGC 62.480 61.111 12.10 0.00 37.29 3.56
3956 5473 2.577644 GTGCGCGACATGGCAATG 60.578 61.111 12.10 0.00 41.46 2.82
3957 5474 3.814268 GGTGCGCGACATGGCAAT 61.814 61.111 12.10 0.00 41.46 3.56
3971 5488 4.135153 CACTCTCCGGGCGAGGTG 62.135 72.222 17.73 9.82 39.30 4.00
3993 5510 3.136123 CTGGAATGGTGGCCGCTG 61.136 66.667 17.49 0.00 0.00 5.18
3996 5513 2.440796 ATGCTGGAATGGTGGCCG 60.441 61.111 0.00 0.00 0.00 6.13
3997 5514 0.757935 ATGATGCTGGAATGGTGGCC 60.758 55.000 0.00 0.00 0.00 5.36
3998 5515 0.387929 CATGATGCTGGAATGGTGGC 59.612 55.000 0.00 0.00 0.00 5.01
3999 5516 1.407618 CACATGATGCTGGAATGGTGG 59.592 52.381 0.00 0.00 0.00 4.61
4000 5517 1.407618 CCACATGATGCTGGAATGGTG 59.592 52.381 0.00 0.00 0.00 4.17
4001 5518 1.285667 TCCACATGATGCTGGAATGGT 59.714 47.619 12.30 0.00 33.39 3.55
4002 5519 1.954382 CTCCACATGATGCTGGAATGG 59.046 52.381 14.56 5.06 36.09 3.16
4003 5520 1.337071 GCTCCACATGATGCTGGAATG 59.663 52.381 14.56 7.91 36.09 2.67
4004 5521 1.688772 GCTCCACATGATGCTGGAAT 58.311 50.000 14.56 0.00 36.09 3.01
4005 5522 0.394762 GGCTCCACATGATGCTGGAA 60.395 55.000 14.56 3.62 36.09 3.53
4006 5523 1.225426 GGCTCCACATGATGCTGGA 59.775 57.895 13.49 13.49 35.20 3.86
4007 5524 1.077285 TGGCTCCACATGATGCTGG 60.077 57.895 0.00 7.46 0.00 4.85
4008 5525 1.712018 CGTGGCTCCACATGATGCTG 61.712 60.000 18.11 0.00 46.47 4.41
4009 5526 1.450848 CGTGGCTCCACATGATGCT 60.451 57.895 18.11 0.00 46.47 3.79
4010 5527 2.475466 CCGTGGCTCCACATGATGC 61.475 63.158 18.11 0.00 46.47 3.91
4011 5528 1.078214 ACCGTGGCTCCACATGATG 60.078 57.895 18.11 0.00 46.47 3.07
4012 5529 1.078214 CACCGTGGCTCCACATGAT 60.078 57.895 18.11 0.00 46.47 2.45
4013 5530 2.213513 TCACCGTGGCTCCACATGA 61.214 57.895 18.11 16.51 46.47 3.07
4014 5531 2.034879 GTCACCGTGGCTCCACATG 61.035 63.158 18.11 14.73 46.47 3.21
4015 5532 2.347490 GTCACCGTGGCTCCACAT 59.653 61.111 18.11 3.70 46.47 3.21
4016 5533 4.293648 CGTCACCGTGGCTCCACA 62.294 66.667 18.11 0.00 46.47 4.17
4040 5557 2.738521 ATCACCACACGCTGCGTC 60.739 61.111 26.49 0.00 38.32 5.19
4041 5558 3.043713 CATCACCACACGCTGCGT 61.044 61.111 23.57 23.57 42.36 5.24
4042 5559 2.738139 TCATCACCACACGCTGCG 60.738 61.111 21.91 21.91 0.00 5.18
4043 5560 2.863153 GTCATCACCACACGCTGC 59.137 61.111 0.00 0.00 0.00 5.25
4044 5561 1.372872 TCGTCATCACCACACGCTG 60.373 57.895 0.00 0.00 33.46 5.18
4045 5562 1.372997 GTCGTCATCACCACACGCT 60.373 57.895 0.00 0.00 33.46 5.07
4046 5563 1.617755 CTGTCGTCATCACCACACGC 61.618 60.000 0.00 0.00 33.46 5.34
4047 5564 0.039527 TCTGTCGTCATCACCACACG 60.040 55.000 0.00 0.00 34.78 4.49
4048 5565 1.995484 CATCTGTCGTCATCACCACAC 59.005 52.381 0.00 0.00 0.00 3.82
4049 5566 1.618343 ACATCTGTCGTCATCACCACA 59.382 47.619 0.00 0.00 0.00 4.17
4050 5567 2.370281 ACATCTGTCGTCATCACCAC 57.630 50.000 0.00 0.00 0.00 4.16
4051 5568 2.687370 CAACATCTGTCGTCATCACCA 58.313 47.619 0.00 0.00 0.00 4.17
4052 5569 1.394917 GCAACATCTGTCGTCATCACC 59.605 52.381 0.00 0.00 0.00 4.02
4053 5570 1.059692 CGCAACATCTGTCGTCATCAC 59.940 52.381 0.00 0.00 0.00 3.06
4054 5571 1.067915 TCGCAACATCTGTCGTCATCA 60.068 47.619 0.00 0.00 0.00 3.07
4055 5572 1.629013 TCGCAACATCTGTCGTCATC 58.371 50.000 0.00 0.00 0.00 2.92
4056 5573 1.929169 CATCGCAACATCTGTCGTCAT 59.071 47.619 0.00 0.00 0.00 3.06
4057 5574 1.349234 CATCGCAACATCTGTCGTCA 58.651 50.000 0.00 0.00 0.00 4.35
4058 5575 0.025513 GCATCGCAACATCTGTCGTC 59.974 55.000 0.00 0.00 0.00 4.20
4059 5576 0.670239 TGCATCGCAACATCTGTCGT 60.670 50.000 0.00 0.00 34.76 4.34
4060 5577 0.025898 CTGCATCGCAACATCTGTCG 59.974 55.000 0.00 0.00 38.41 4.35
4061 5578 0.247974 GCTGCATCGCAACATCTGTC 60.248 55.000 0.00 0.00 38.41 3.51
4062 5579 1.798735 GCTGCATCGCAACATCTGT 59.201 52.632 0.00 0.00 38.41 3.41
4063 5580 1.297378 CGCTGCATCGCAACATCTG 60.297 57.895 0.00 0.00 38.41 2.90
4064 5581 2.466982 CCGCTGCATCGCAACATCT 61.467 57.895 4.01 0.00 38.41 2.90
4065 5582 2.023741 CCGCTGCATCGCAACATC 59.976 61.111 4.01 0.00 38.41 3.06
4066 5583 2.436469 TCCGCTGCATCGCAACAT 60.436 55.556 4.01 0.00 38.41 2.71
4067 5584 3.422303 GTCCGCTGCATCGCAACA 61.422 61.111 4.01 0.00 38.41 3.33
4068 5585 4.505217 CGTCCGCTGCATCGCAAC 62.505 66.667 4.01 4.17 38.41 4.17
4069 5586 4.733371 TCGTCCGCTGCATCGCAA 62.733 61.111 4.01 0.00 38.41 4.85
4092 5609 1.523032 TCGCATCATCCAGCAGCTG 60.523 57.895 16.23 16.23 0.00 4.24
4093 5610 1.523258 GTCGCATCATCCAGCAGCT 60.523 57.895 0.00 0.00 0.00 4.24
4094 5611 2.879070 CGTCGCATCATCCAGCAGC 61.879 63.158 0.00 0.00 0.00 5.25
4095 5612 2.242572 CCGTCGCATCATCCAGCAG 61.243 63.158 0.00 0.00 0.00 4.24
4096 5613 2.202919 CCGTCGCATCATCCAGCA 60.203 61.111 0.00 0.00 0.00 4.41
4097 5614 1.521457 TTCCGTCGCATCATCCAGC 60.521 57.895 0.00 0.00 0.00 4.85
4098 5615 2.301505 GTTCCGTCGCATCATCCAG 58.698 57.895 0.00 0.00 0.00 3.86
4099 5616 4.513519 GTTCCGTCGCATCATCCA 57.486 55.556 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.