Multiple sequence alignment - TraesCS1D01G432600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G432600 chr1D 100.000 3062 0 0 1 3062 482244459 482241398 0.000000e+00 5655.0
1 TraesCS1D01G432600 chr1D 100.000 28 0 0 590 617 482269521 482269494 6.000000e-03 52.8
2 TraesCS1D01G432600 chr1A 95.077 1036 44 4 915 1943 578941226 578940191 0.000000e+00 1624.0
3 TraesCS1D01G432600 chr1A 92.167 600 40 2 1937 2535 578940166 578939573 0.000000e+00 841.0
4 TraesCS1D01G432600 chr1A 85.714 469 42 8 624 1080 579017771 579017316 3.570000e-129 472.0
5 TraesCS1D01G432600 chr1A 89.153 378 37 4 2544 2919 352851894 352851519 4.620000e-128 468.0
6 TraesCS1D01G432600 chr1A 79.614 466 77 11 1937 2385 110283359 110282895 4.930000e-83 318.0
7 TraesCS1D01G432600 chr1A 92.000 150 7 1 2918 3062 578939559 578939410 4.000000e-49 206.0
8 TraesCS1D01G432600 chr3B 85.560 1108 137 15 854 1943 819992102 819991000 0.000000e+00 1138.0
9 TraesCS1D01G432600 chr3B 83.759 1096 153 15 861 1940 820186009 820184923 0.000000e+00 1014.0
10 TraesCS1D01G432600 chr3B 83.229 960 148 9 996 1943 820122919 820123877 0.000000e+00 869.0
11 TraesCS1D01G432600 chr3B 91.327 588 25 7 12 590 738623599 738624169 0.000000e+00 780.0
12 TraesCS1D01G432600 chr3B 87.631 477 58 1 1937 2412 819990976 819990500 1.240000e-153 553.0
13 TraesCS1D01G432600 chr3B 86.396 419 57 0 975 1393 820114385 820114803 2.780000e-125 459.0
14 TraesCS1D01G432600 chr3B 83.857 477 76 1 1937 2412 820123901 820124377 1.290000e-123 453.0
15 TraesCS1D01G432600 chr3B 76.063 447 96 10 1939 2379 24901732 24901291 3.970000e-54 222.0
16 TraesCS1D01G432600 chr3D 84.800 1125 137 17 838 1940 609363658 609364770 0.000000e+00 1099.0
17 TraesCS1D01G432600 chr3D 77.079 445 95 7 1939 2379 17342152 17341711 1.820000e-62 250.0
18 TraesCS1D01G432600 chr3D 86.806 144 17 2 12 154 280190848 280190706 3.160000e-35 159.0
19 TraesCS1D01G432600 chr3D 84.459 148 23 0 2011 2158 387557179 387557032 2.460000e-31 147.0
20 TraesCS1D01G432600 chr3A 86.154 975 126 5 975 1940 742928920 742929894 0.000000e+00 1044.0
21 TraesCS1D01G432600 chr3A 83.934 666 98 4 1230 1886 742955309 742955974 2.000000e-176 628.0
22 TraesCS1D01G432600 chr5B 83.560 955 138 11 999 1936 65526368 65525416 0.000000e+00 876.0
23 TraesCS1D01G432600 chr5B 92.765 387 21 7 217 598 211018127 211017743 1.240000e-153 553.0
24 TraesCS1D01G432600 chr5B 90.223 358 30 4 2540 2896 494295450 494295097 2.150000e-126 462.0
25 TraesCS1D01G432600 chr5B 88.032 376 36 9 2545 2917 24680398 24680029 1.300000e-118 436.0
26 TraesCS1D01G432600 chr5B 82.338 402 67 2 1976 2373 65525345 65524944 2.260000e-91 346.0
27 TraesCS1D01G432600 chr5B 94.839 155 8 0 14 168 211020010 211019856 3.050000e-60 243.0
28 TraesCS1D01G432600 chr6B 93.333 585 32 4 12 590 633012157 633012740 0.000000e+00 857.0
29 TraesCS1D01G432600 chr6B 92.929 594 35 4 12 599 633044450 633043858 0.000000e+00 857.0
30 TraesCS1D01G432600 chr6B 92.881 590 33 6 12 595 709523028 709522442 0.000000e+00 848.0
31 TraesCS1D01G432600 chr6B 88.329 377 39 5 2544 2919 671139871 671139499 6.020000e-122 448.0
32 TraesCS1D01G432600 chr5D 82.981 946 146 7 999 1929 65008901 65009846 0.000000e+00 841.0
33 TraesCS1D01G432600 chr5D 88.918 379 38 4 2544 2918 260675963 260675585 5.980000e-127 464.0
34 TraesCS1D01G432600 chr5D 80.169 474 90 2 1937 2406 65009885 65010358 4.860000e-93 351.0
35 TraesCS1D01G432600 chr5D 76.351 148 26 9 1784 1927 431971073 431971215 1.520000e-08 71.3
36 TraesCS1D01G432600 chr6D 93.922 510 22 4 13 513 456825225 456824716 0.000000e+00 761.0
37 TraesCS1D01G432600 chr6D 89.394 66 5 2 549 613 3109224 3109160 7.040000e-12 82.4
38 TraesCS1D01G432600 chr2D 90.237 379 29 4 2544 2918 81638831 81639205 3.550000e-134 488.0
39 TraesCS1D01G432600 chr4B 88.859 377 36 5 2544 2918 615836213 615835841 2.780000e-125 459.0
40 TraesCS1D01G432600 chr4B 86.632 389 44 7 2540 2925 112033307 112032924 1.010000e-114 424.0
41 TraesCS1D01G432600 chr4B 86.207 58 6 2 1784 1840 670805568 670805512 9.170000e-06 62.1
42 TraesCS1D01G432600 chr4A 89.751 361 30 7 2544 2902 625170639 625170284 3.600000e-124 455.0
43 TraesCS1D01G432600 chr1B 87.179 234 27 2 363 593 598199452 598199219 2.340000e-66 263.0
44 TraesCS1D01G432600 chr7D 81.356 236 36 7 369 599 128433269 128433037 5.210000e-43 185.0
45 TraesCS1D01G432600 chr2B 83.750 80 10 3 516 595 20707904 20707980 4.240000e-09 73.1
46 TraesCS1D01G432600 chrUn 86.207 58 6 2 1784 1840 28581286 28581230 9.170000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G432600 chr1D 482241398 482244459 3061 True 5655.000000 5655 100.000000 1 3062 1 chr1D.!!$R1 3061
1 TraesCS1D01G432600 chr1A 578939410 578941226 1816 True 890.333333 1624 93.081333 915 3062 3 chr1A.!!$R4 2147
2 TraesCS1D01G432600 chr3B 820184923 820186009 1086 True 1014.000000 1014 83.759000 861 1940 1 chr3B.!!$R2 1079
3 TraesCS1D01G432600 chr3B 819990500 819992102 1602 True 845.500000 1138 86.595500 854 2412 2 chr3B.!!$R3 1558
4 TraesCS1D01G432600 chr3B 738623599 738624169 570 False 780.000000 780 91.327000 12 590 1 chr3B.!!$F1 578
5 TraesCS1D01G432600 chr3B 820122919 820124377 1458 False 661.000000 869 83.543000 996 2412 2 chr3B.!!$F3 1416
6 TraesCS1D01G432600 chr3D 609363658 609364770 1112 False 1099.000000 1099 84.800000 838 1940 1 chr3D.!!$F1 1102
7 TraesCS1D01G432600 chr3A 742928920 742929894 974 False 1044.000000 1044 86.154000 975 1940 1 chr3A.!!$F1 965
8 TraesCS1D01G432600 chr3A 742955309 742955974 665 False 628.000000 628 83.934000 1230 1886 1 chr3A.!!$F2 656
9 TraesCS1D01G432600 chr5B 65524944 65526368 1424 True 611.000000 876 82.949000 999 2373 2 chr5B.!!$R3 1374
10 TraesCS1D01G432600 chr5B 211017743 211020010 2267 True 398.000000 553 93.802000 14 598 2 chr5B.!!$R4 584
11 TraesCS1D01G432600 chr6B 633012157 633012740 583 False 857.000000 857 93.333000 12 590 1 chr6B.!!$F1 578
12 TraesCS1D01G432600 chr6B 633043858 633044450 592 True 857.000000 857 92.929000 12 599 1 chr6B.!!$R1 587
13 TraesCS1D01G432600 chr6B 709522442 709523028 586 True 848.000000 848 92.881000 12 595 1 chr6B.!!$R3 583
14 TraesCS1D01G432600 chr5D 65008901 65010358 1457 False 596.000000 841 81.575000 999 2406 2 chr5D.!!$F2 1407
15 TraesCS1D01G432600 chr6D 456824716 456825225 509 True 761.000000 761 93.922000 13 513 1 chr6D.!!$R2 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
722 2420 0.030773 TCTGTCTGTCTGTCACGTGC 59.969 55.0 11.67 6.86 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2718 4496 0.321564 AGCGAGTGCCACTTTGCATA 60.322 50.0 20.52 0.0 44.3 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 7.408132 TCGATCAGATAAATTTAAAGAGCGG 57.592 36.000 23.05 12.56 34.63 5.52
344 2037 4.134563 CAAAGGAAGGGAACGAAGAGAAA 58.865 43.478 0.00 0.00 0.00 2.52
400 2094 2.884827 ACGGTTATACGAGGACAAAGC 58.115 47.619 0.00 0.00 37.61 3.51
468 2162 1.068588 TGGACTGTTCTTCCAGACGTG 59.931 52.381 0.00 0.00 38.28 4.49
493 2187 4.760204 GGGAAGGATTTGGATGGTATAACG 59.240 45.833 0.00 0.00 0.00 3.18
496 2190 5.818678 AGGATTTGGATGGTATAACGCTA 57.181 39.130 0.00 0.00 0.00 4.26
501 2195 7.822822 GGATTTGGATGGTATAACGCTATTACT 59.177 37.037 0.00 0.00 0.00 2.24
518 2212 1.557099 ACTGGACACTGCCGAAGATA 58.443 50.000 0.00 0.00 0.00 1.98
524 2218 3.262420 GACACTGCCGAAGATAACATGT 58.738 45.455 0.00 0.00 0.00 3.21
591 2289 2.288666 CACGGGCATTTGTGCTAGTAT 58.711 47.619 0.07 0.00 34.73 2.12
593 2291 4.065088 CACGGGCATTTGTGCTAGTATAT 58.935 43.478 0.07 0.00 34.73 0.86
599 2297 8.388103 CGGGCATTTGTGCTAGTATATATAAAC 58.612 37.037 0.00 0.00 34.73 2.01
600 2298 8.674607 GGGCATTTGTGCTAGTATATATAAACC 58.325 37.037 0.00 0.00 34.73 3.27
601 2299 8.388103 GGCATTTGTGCTAGTATATATAAACCG 58.612 37.037 0.00 0.00 34.73 4.44
602 2300 9.146984 GCATTTGTGCTAGTATATATAAACCGA 57.853 33.333 0.00 0.00 0.00 4.69
648 2346 9.455847 TTTTTACAAACGAGACTAACTAGAGAC 57.544 33.333 0.00 0.00 0.00 3.36
649 2347 5.625921 ACAAACGAGACTAACTAGAGACC 57.374 43.478 0.00 0.00 0.00 3.85
650 2348 4.153835 ACAAACGAGACTAACTAGAGACCG 59.846 45.833 0.00 0.00 0.00 4.79
651 2349 2.903798 ACGAGACTAACTAGAGACCGG 58.096 52.381 0.00 0.00 0.00 5.28
652 2350 1.598601 CGAGACTAACTAGAGACCGGC 59.401 57.143 0.00 0.00 0.00 6.13
653 2351 2.742530 CGAGACTAACTAGAGACCGGCT 60.743 54.545 0.00 0.00 0.00 5.52
654 2352 3.492309 CGAGACTAACTAGAGACCGGCTA 60.492 52.174 0.00 0.00 0.00 3.93
655 2353 4.450053 GAGACTAACTAGAGACCGGCTAA 58.550 47.826 0.00 0.00 0.00 3.09
656 2354 4.853007 AGACTAACTAGAGACCGGCTAAA 58.147 43.478 0.00 0.00 0.00 1.85
657 2355 5.259632 AGACTAACTAGAGACCGGCTAAAA 58.740 41.667 0.00 0.00 0.00 1.52
658 2356 5.357596 AGACTAACTAGAGACCGGCTAAAAG 59.642 44.000 0.00 0.00 0.00 2.27
659 2357 2.963548 ACTAGAGACCGGCTAAAAGC 57.036 50.000 0.00 0.00 41.46 3.51
660 2358 2.458620 ACTAGAGACCGGCTAAAAGCT 58.541 47.619 0.00 0.00 41.99 3.74
661 2359 3.629087 ACTAGAGACCGGCTAAAAGCTA 58.371 45.455 0.00 0.00 41.99 3.32
662 2360 2.963548 AGAGACCGGCTAAAAGCTAC 57.036 50.000 0.00 0.00 41.99 3.58
663 2361 2.458620 AGAGACCGGCTAAAAGCTACT 58.541 47.619 0.00 0.00 41.99 2.57
664 2362 2.427812 AGAGACCGGCTAAAAGCTACTC 59.572 50.000 0.00 0.00 41.99 2.59
665 2363 2.427812 GAGACCGGCTAAAAGCTACTCT 59.572 50.000 0.00 0.00 41.99 3.24
666 2364 3.629087 AGACCGGCTAAAAGCTACTCTA 58.371 45.455 0.00 0.00 41.99 2.43
667 2365 3.380954 AGACCGGCTAAAAGCTACTCTAC 59.619 47.826 0.00 0.00 41.99 2.59
668 2366 2.429971 ACCGGCTAAAAGCTACTCTACC 59.570 50.000 0.00 0.00 41.99 3.18
669 2367 2.694109 CCGGCTAAAAGCTACTCTACCT 59.306 50.000 0.00 0.00 41.99 3.08
670 2368 3.887716 CCGGCTAAAAGCTACTCTACCTA 59.112 47.826 0.00 0.00 41.99 3.08
671 2369 4.340381 CCGGCTAAAAGCTACTCTACCTAA 59.660 45.833 0.00 0.00 41.99 2.69
672 2370 5.280164 CGGCTAAAAGCTACTCTACCTAAC 58.720 45.833 0.00 0.00 41.99 2.34
673 2371 5.163581 CGGCTAAAAGCTACTCTACCTAACA 60.164 44.000 0.00 0.00 41.99 2.41
674 2372 6.274579 GGCTAAAAGCTACTCTACCTAACAG 58.725 44.000 0.00 0.00 41.99 3.16
675 2373 5.749588 GCTAAAAGCTACTCTACCTAACAGC 59.250 44.000 0.00 0.00 38.45 4.40
676 2374 4.373348 AAAGCTACTCTACCTAACAGCG 57.627 45.455 0.00 0.00 34.26 5.18
677 2375 3.002038 AGCTACTCTACCTAACAGCGT 57.998 47.619 0.00 0.00 34.26 5.07
678 2376 4.148128 AGCTACTCTACCTAACAGCGTA 57.852 45.455 0.00 0.00 34.26 4.42
679 2377 3.876320 AGCTACTCTACCTAACAGCGTAC 59.124 47.826 0.00 0.00 34.26 3.67
680 2378 3.876320 GCTACTCTACCTAACAGCGTACT 59.124 47.826 0.00 0.00 0.00 2.73
693 2391 3.963428 AGCGTACTGATTCAAACCTCT 57.037 42.857 0.00 0.00 0.00 3.69
695 2393 5.599999 AGCGTACTGATTCAAACCTCTAT 57.400 39.130 0.00 0.00 0.00 1.98
696 2394 5.593010 AGCGTACTGATTCAAACCTCTATC 58.407 41.667 0.00 0.00 0.00 2.08
697 2395 5.361285 AGCGTACTGATTCAAACCTCTATCT 59.639 40.000 0.00 0.00 0.00 1.98
698 2396 5.460419 GCGTACTGATTCAAACCTCTATCTG 59.540 44.000 0.00 0.00 0.00 2.90
699 2397 6.565234 CGTACTGATTCAAACCTCTATCTGT 58.435 40.000 0.00 0.00 34.77 3.41
700 2398 6.693545 CGTACTGATTCAAACCTCTATCTGTC 59.306 42.308 0.00 0.00 33.26 3.51
701 2399 6.865834 ACTGATTCAAACCTCTATCTGTCT 57.134 37.500 0.00 0.00 0.00 3.41
702 2400 6.638610 ACTGATTCAAACCTCTATCTGTCTG 58.361 40.000 0.00 0.00 0.00 3.51
703 2401 6.212388 ACTGATTCAAACCTCTATCTGTCTGT 59.788 38.462 0.00 0.00 0.00 3.41
704 2402 6.634805 TGATTCAAACCTCTATCTGTCTGTC 58.365 40.000 0.00 0.00 0.00 3.51
705 2403 6.438741 TGATTCAAACCTCTATCTGTCTGTCT 59.561 38.462 0.00 0.00 0.00 3.41
706 2404 5.651387 TCAAACCTCTATCTGTCTGTCTG 57.349 43.478 0.00 0.00 0.00 3.51
707 2405 5.080337 TCAAACCTCTATCTGTCTGTCTGT 58.920 41.667 0.00 0.00 0.00 3.41
708 2406 5.184096 TCAAACCTCTATCTGTCTGTCTGTC 59.816 44.000 0.00 0.00 0.00 3.51
709 2407 4.584638 ACCTCTATCTGTCTGTCTGTCT 57.415 45.455 0.00 0.00 0.00 3.41
710 2408 4.269183 ACCTCTATCTGTCTGTCTGTCTG 58.731 47.826 0.00 0.00 0.00 3.51
711 2409 4.263727 ACCTCTATCTGTCTGTCTGTCTGT 60.264 45.833 0.00 0.00 0.00 3.41
712 2410 4.335315 CCTCTATCTGTCTGTCTGTCTGTC 59.665 50.000 0.00 0.00 0.00 3.51
713 2411 5.172687 TCTATCTGTCTGTCTGTCTGTCT 57.827 43.478 0.00 0.00 0.00 3.41
714 2412 4.940654 TCTATCTGTCTGTCTGTCTGTCTG 59.059 45.833 0.00 0.00 0.00 3.51
715 2413 2.937519 TCTGTCTGTCTGTCTGTCTGT 58.062 47.619 0.00 0.00 0.00 3.41
716 2414 2.881513 TCTGTCTGTCTGTCTGTCTGTC 59.118 50.000 0.00 0.00 0.00 3.51
717 2415 2.620585 CTGTCTGTCTGTCTGTCTGTCA 59.379 50.000 0.00 0.00 0.00 3.58
718 2416 2.359214 TGTCTGTCTGTCTGTCTGTCAC 59.641 50.000 0.00 0.00 0.00 3.67
719 2417 1.604278 TCTGTCTGTCTGTCTGTCACG 59.396 52.381 0.00 0.00 0.00 4.35
720 2418 1.335182 CTGTCTGTCTGTCTGTCACGT 59.665 52.381 0.00 0.00 0.00 4.49
721 2419 1.065551 TGTCTGTCTGTCTGTCACGTG 59.934 52.381 9.94 9.94 0.00 4.49
722 2420 0.030773 TCTGTCTGTCTGTCACGTGC 59.969 55.000 11.67 6.86 0.00 5.34
723 2421 0.249031 CTGTCTGTCTGTCACGTGCA 60.249 55.000 11.67 11.44 0.00 4.57
724 2422 0.389025 TGTCTGTCTGTCACGTGCAT 59.611 50.000 11.67 0.00 0.00 3.96
725 2423 1.611491 TGTCTGTCTGTCACGTGCATA 59.389 47.619 11.67 2.33 0.00 3.14
726 2424 2.231235 TGTCTGTCTGTCACGTGCATAT 59.769 45.455 11.67 0.00 0.00 1.78
727 2425 3.442273 TGTCTGTCTGTCACGTGCATATA 59.558 43.478 11.67 3.02 0.00 0.86
728 2426 4.097892 TGTCTGTCTGTCACGTGCATATAT 59.902 41.667 11.67 0.00 0.00 0.86
729 2427 5.298276 TGTCTGTCTGTCACGTGCATATATA 59.702 40.000 11.67 0.00 0.00 0.86
730 2428 6.016276 TGTCTGTCTGTCACGTGCATATATAT 60.016 38.462 11.67 0.00 0.00 0.86
731 2429 6.306596 GTCTGTCTGTCACGTGCATATATATG 59.693 42.308 17.01 17.01 36.78 1.78
744 2442 5.980698 CATATATATGCTTCCTCCGCAAG 57.019 43.478 9.75 0.00 41.26 4.01
756 2454 3.808036 CGCAAGGTACCCCGATTG 58.192 61.111 8.74 7.78 35.12 2.67
757 2455 1.078708 CGCAAGGTACCCCGATTGT 60.079 57.895 8.74 0.00 35.12 2.71
758 2456 1.087771 CGCAAGGTACCCCGATTGTC 61.088 60.000 8.74 2.67 35.12 3.18
759 2457 0.746923 GCAAGGTACCCCGATTGTCC 60.747 60.000 8.74 0.00 35.12 4.02
760 2458 0.616371 CAAGGTACCCCGATTGTCCA 59.384 55.000 8.74 0.00 35.12 4.02
761 2459 0.909623 AAGGTACCCCGATTGTCCAG 59.090 55.000 8.74 0.00 35.12 3.86
762 2460 0.981277 AGGTACCCCGATTGTCCAGG 60.981 60.000 8.74 0.00 35.12 4.45
763 2461 1.153229 GTACCCCGATTGTCCAGGC 60.153 63.158 0.00 0.00 0.00 4.85
764 2462 1.613928 TACCCCGATTGTCCAGGCA 60.614 57.895 0.00 0.00 0.00 4.75
765 2463 1.622607 TACCCCGATTGTCCAGGCAG 61.623 60.000 0.00 0.00 0.00 4.85
766 2464 2.825836 CCCGATTGTCCAGGCAGC 60.826 66.667 0.00 0.00 0.00 5.25
767 2465 2.270205 CCGATTGTCCAGGCAGCT 59.730 61.111 0.00 0.00 0.00 4.24
768 2466 1.522092 CCGATTGTCCAGGCAGCTA 59.478 57.895 0.00 0.00 0.00 3.32
769 2467 0.811616 CCGATTGTCCAGGCAGCTAC 60.812 60.000 0.00 0.00 0.00 3.58
770 2468 0.811616 CGATTGTCCAGGCAGCTACC 60.812 60.000 0.00 0.00 0.00 3.18
771 2469 0.253044 GATTGTCCAGGCAGCTACCA 59.747 55.000 5.58 0.00 0.00 3.25
772 2470 0.254178 ATTGTCCAGGCAGCTACCAG 59.746 55.000 5.58 0.00 0.00 4.00
773 2471 1.841302 TTGTCCAGGCAGCTACCAGG 61.841 60.000 8.15 8.15 37.71 4.45
774 2472 1.990060 GTCCAGGCAGCTACCAGGA 60.990 63.158 13.03 13.03 42.69 3.86
775 2473 1.229496 TCCAGGCAGCTACCAGGAA 60.229 57.895 14.59 0.00 42.03 3.36
776 2474 0.840288 TCCAGGCAGCTACCAGGAAA 60.840 55.000 14.59 0.00 42.03 3.13
777 2475 0.678048 CCAGGCAGCTACCAGGAAAC 60.678 60.000 8.80 0.00 38.65 2.78
778 2476 0.036732 CAGGCAGCTACCAGGAAACA 59.963 55.000 5.58 0.00 0.00 2.83
779 2477 0.995024 AGGCAGCTACCAGGAAACAT 59.005 50.000 5.58 0.00 0.00 2.71
780 2478 1.065126 AGGCAGCTACCAGGAAACATC 60.065 52.381 5.58 0.00 0.00 3.06
781 2479 1.009829 GCAGCTACCAGGAAACATCG 58.990 55.000 0.00 0.00 0.00 3.84
782 2480 1.676014 GCAGCTACCAGGAAACATCGT 60.676 52.381 0.00 0.00 0.00 3.73
783 2481 2.271800 CAGCTACCAGGAAACATCGTC 58.728 52.381 0.00 0.00 0.00 4.20
784 2482 2.093973 CAGCTACCAGGAAACATCGTCT 60.094 50.000 0.00 0.00 0.00 4.18
785 2483 2.567615 AGCTACCAGGAAACATCGTCTT 59.432 45.455 0.00 0.00 0.00 3.01
786 2484 2.673368 GCTACCAGGAAACATCGTCTTG 59.327 50.000 0.00 0.00 0.00 3.02
787 2485 3.616560 GCTACCAGGAAACATCGTCTTGA 60.617 47.826 0.00 0.00 0.00 3.02
788 2486 3.485463 ACCAGGAAACATCGTCTTGAA 57.515 42.857 0.00 0.00 0.00 2.69
789 2487 3.403038 ACCAGGAAACATCGTCTTGAAG 58.597 45.455 0.00 0.00 0.00 3.02
790 2488 3.071023 ACCAGGAAACATCGTCTTGAAGA 59.929 43.478 0.00 0.00 0.00 2.87
791 2489 3.433615 CCAGGAAACATCGTCTTGAAGAC 59.566 47.826 15.12 15.12 41.71 3.01
792 2490 4.310769 CAGGAAACATCGTCTTGAAGACT 58.689 43.478 21.61 3.10 42.92 3.24
793 2491 4.752101 CAGGAAACATCGTCTTGAAGACTT 59.248 41.667 21.61 9.74 42.92 3.01
794 2492 4.752101 AGGAAACATCGTCTTGAAGACTTG 59.248 41.667 21.61 19.50 42.92 3.16
795 2493 4.750098 GGAAACATCGTCTTGAAGACTTGA 59.250 41.667 21.61 13.41 42.92 3.02
796 2494 5.236478 GGAAACATCGTCTTGAAGACTTGAA 59.764 40.000 21.61 6.44 42.92 2.69
797 2495 5.659048 AACATCGTCTTGAAGACTTGAAC 57.341 39.130 21.61 0.00 42.92 3.18
798 2496 4.058817 ACATCGTCTTGAAGACTTGAACC 58.941 43.478 21.61 0.00 42.92 3.62
799 2497 3.812156 TCGTCTTGAAGACTTGAACCA 57.188 42.857 21.61 0.00 42.92 3.67
800 2498 3.454375 TCGTCTTGAAGACTTGAACCAC 58.546 45.455 21.61 0.00 42.92 4.16
801 2499 2.544267 CGTCTTGAAGACTTGAACCACC 59.456 50.000 21.61 0.00 42.92 4.61
802 2500 3.541632 GTCTTGAAGACTTGAACCACCA 58.458 45.455 17.61 0.00 41.88 4.17
803 2501 3.312697 GTCTTGAAGACTTGAACCACCAC 59.687 47.826 17.61 0.00 41.88 4.16
804 2502 3.054728 TCTTGAAGACTTGAACCACCACA 60.055 43.478 0.00 0.00 0.00 4.17
805 2503 3.358111 TGAAGACTTGAACCACCACAA 57.642 42.857 0.00 0.00 0.00 3.33
806 2504 3.691575 TGAAGACTTGAACCACCACAAA 58.308 40.909 0.00 0.00 0.00 2.83
807 2505 4.277476 TGAAGACTTGAACCACCACAAAT 58.723 39.130 0.00 0.00 0.00 2.32
808 2506 4.709397 TGAAGACTTGAACCACCACAAATT 59.291 37.500 0.00 0.00 0.00 1.82
809 2507 5.888724 TGAAGACTTGAACCACCACAAATTA 59.111 36.000 0.00 0.00 0.00 1.40
810 2508 5.767816 AGACTTGAACCACCACAAATTAC 57.232 39.130 0.00 0.00 0.00 1.89
811 2509 5.445964 AGACTTGAACCACCACAAATTACT 58.554 37.500 0.00 0.00 0.00 2.24
812 2510 5.891551 AGACTTGAACCACCACAAATTACTT 59.108 36.000 0.00 0.00 0.00 2.24
813 2511 6.379988 AGACTTGAACCACCACAAATTACTTT 59.620 34.615 0.00 0.00 0.00 2.66
814 2512 7.558444 AGACTTGAACCACCACAAATTACTTTA 59.442 33.333 0.00 0.00 0.00 1.85
815 2513 8.245195 ACTTGAACCACCACAAATTACTTTAT 57.755 30.769 0.00 0.00 0.00 1.40
816 2514 8.357402 ACTTGAACCACCACAAATTACTTTATC 58.643 33.333 0.00 0.00 0.00 1.75
817 2515 7.222000 TGAACCACCACAAATTACTTTATCC 57.778 36.000 0.00 0.00 0.00 2.59
818 2516 5.890424 ACCACCACAAATTACTTTATCCG 57.110 39.130 0.00 0.00 0.00 4.18
819 2517 5.562635 ACCACCACAAATTACTTTATCCGA 58.437 37.500 0.00 0.00 0.00 4.55
820 2518 5.646360 ACCACCACAAATTACTTTATCCGAG 59.354 40.000 0.00 0.00 0.00 4.63
821 2519 5.065988 CCACCACAAATTACTTTATCCGAGG 59.934 44.000 0.00 0.00 0.00 4.63
822 2520 5.646360 CACCACAAATTACTTTATCCGAGGT 59.354 40.000 0.00 0.00 0.00 3.85
823 2521 6.819649 CACCACAAATTACTTTATCCGAGGTA 59.180 38.462 0.00 0.00 0.00 3.08
824 2522 7.011109 CACCACAAATTACTTTATCCGAGGTAG 59.989 40.741 0.00 0.00 0.00 3.18
825 2523 7.093201 ACCACAAATTACTTTATCCGAGGTAGA 60.093 37.037 0.00 0.00 0.00 2.59
826 2524 7.931948 CCACAAATTACTTTATCCGAGGTAGAT 59.068 37.037 0.00 0.00 0.00 1.98
827 2525 9.326413 CACAAATTACTTTATCCGAGGTAGATT 57.674 33.333 0.00 0.00 0.00 2.40
828 2526 9.901172 ACAAATTACTTTATCCGAGGTAGATTT 57.099 29.630 0.00 0.00 0.00 2.17
835 2533 8.979534 ACTTTATCCGAGGTAGATTTAGAAACT 58.020 33.333 0.00 0.00 0.00 2.66
836 2534 9.250624 CTTTATCCGAGGTAGATTTAGAAACTG 57.749 37.037 0.00 0.00 0.00 3.16
886 2586 2.173356 CCTGAGATCCATGCCCAAACTA 59.827 50.000 0.00 0.00 0.00 2.24
889 2589 3.266772 TGAGATCCATGCCCAAACTACTT 59.733 43.478 0.00 0.00 0.00 2.24
930 2640 4.378046 GGCAACGACAACTATTTACACCTG 60.378 45.833 0.00 0.00 0.00 4.00
952 2664 4.962836 GTGCCAGTGCCACCTGCT 62.963 66.667 7.57 0.00 42.00 4.24
961 2675 1.867233 GTGCCACCTGCTACATATTCG 59.133 52.381 0.00 0.00 42.00 3.34
962 2677 0.868406 GCCACCTGCTACATATTCGC 59.132 55.000 0.00 0.00 36.87 4.70
1081 2798 1.801913 CTCGCCAACGTCTTCCTCG 60.802 63.158 0.00 0.00 41.18 4.63
1227 2945 1.073722 CCCTGCTCCAGACTTTGCA 59.926 57.895 0.00 0.00 32.44 4.08
1247 2965 2.747855 CTCCGGCAAGCACCCTTC 60.748 66.667 0.00 0.00 0.00 3.46
1322 3041 2.361865 CGGCATCCCCCGGAAAAA 60.362 61.111 0.73 0.00 44.46 1.94
1323 3042 2.414785 CGGCATCCCCCGGAAAAAG 61.415 63.158 0.73 0.00 44.46 2.27
1458 3177 2.063979 CCAGGTCCCGGCACTGATA 61.064 63.158 16.78 0.00 34.21 2.15
1695 3423 4.414956 ATGGACCTCCCCGGCAGA 62.415 66.667 0.00 0.00 35.61 4.26
1974 3742 1.210478 TGCTGCCTCAAGGATTCCTAC 59.790 52.381 5.43 0.00 37.39 3.18
1982 3750 1.207089 CAAGGATTCCTACAGCGGACA 59.793 52.381 5.43 0.00 31.13 4.02
2184 3955 4.148825 AGGACATGGGCGTCGCTC 62.149 66.667 18.11 14.81 36.73 5.03
2208 3979 1.565759 AGCTGGAGGAATACATGGCAA 59.434 47.619 0.00 0.00 0.00 4.52
2233 4005 1.273838 TGTAAGGCAGAGGAGGTGGAT 60.274 52.381 0.00 0.00 0.00 3.41
2363 4135 2.716864 CGTCGTTTGCCCGGTTTT 59.283 55.556 0.00 0.00 0.00 2.43
2453 4225 7.604927 TGTTCTTTGCCTTCTACGTATATGTTT 59.395 33.333 2.23 0.00 0.00 2.83
2466 4238 9.798994 CTACGTATATGTTTCTAGTCCAAGTTT 57.201 33.333 2.23 0.00 0.00 2.66
2484 4256 9.374711 TCCAAGTTTCCCTCTTGTTTATATTTT 57.625 29.630 0.00 0.00 40.15 1.82
2489 4261 9.983804 GTTTCCCTCTTGTTTATATTTTACTCG 57.016 33.333 0.00 0.00 0.00 4.18
2505 4277 1.739466 ACTCGTAGTTGCATTGCATGG 59.261 47.619 12.95 0.78 38.76 3.66
2521 4293 5.375417 TGCATGGTCAATCACTTAACTTG 57.625 39.130 0.00 0.00 0.00 3.16
2526 4298 4.695455 TGGTCAATCACTTAACTTGCTAGC 59.305 41.667 8.10 8.10 0.00 3.42
2532 4310 3.436704 TCACTTAACTTGCTAGCATGTGC 59.563 43.478 30.34 0.00 42.49 4.57
2556 4334 7.734538 CGTAGCACCATTTAAAACCATTAAG 57.265 36.000 0.00 0.00 0.00 1.85
2557 4335 6.252655 CGTAGCACCATTTAAAACCATTAAGC 59.747 38.462 0.00 0.00 0.00 3.09
2558 4336 6.358974 AGCACCATTTAAAACCATTAAGCT 57.641 33.333 0.00 0.00 0.00 3.74
2559 4337 7.475137 AGCACCATTTAAAACCATTAAGCTA 57.525 32.000 0.00 0.00 0.00 3.32
2560 4338 7.320399 AGCACCATTTAAAACCATTAAGCTAC 58.680 34.615 0.00 0.00 0.00 3.58
2561 4339 6.252655 GCACCATTTAAAACCATTAAGCTACG 59.747 38.462 0.00 0.00 0.00 3.51
2562 4340 6.252655 CACCATTTAAAACCATTAAGCTACGC 59.747 38.462 0.00 0.00 0.00 4.42
2563 4341 5.454232 CCATTTAAAACCATTAAGCTACGCG 59.546 40.000 3.53 3.53 0.00 6.01
2564 4342 5.610235 TTTAAAACCATTAAGCTACGCGT 57.390 34.783 19.17 19.17 0.00 6.01
2565 4343 3.465122 AAAACCATTAAGCTACGCGTG 57.535 42.857 24.59 13.17 0.00 5.34
2566 4344 1.365699 AACCATTAAGCTACGCGTGG 58.634 50.000 24.59 21.81 0.00 4.94
2567 4345 0.533491 ACCATTAAGCTACGCGTGGA 59.467 50.000 27.75 5.36 0.00 4.02
2568 4346 1.209128 CCATTAAGCTACGCGTGGAG 58.791 55.000 27.75 16.01 0.00 3.86
2569 4347 1.209128 CATTAAGCTACGCGTGGAGG 58.791 55.000 27.75 12.38 0.00 4.30
2570 4348 0.104304 ATTAAGCTACGCGTGGAGGG 59.896 55.000 27.75 9.89 38.93 4.30
2572 4350 1.940883 TAAGCTACGCGTGGAGGGTG 61.941 60.000 27.75 6.42 46.11 4.61
2573 4351 4.814294 GCTACGCGTGGAGGGTGG 62.814 72.222 27.75 0.00 46.11 4.61
2574 4352 4.814294 CTACGCGTGGAGGGTGGC 62.814 72.222 24.59 0.00 46.11 5.01
2588 4366 2.281900 TGGCCAACCAACTACGCC 60.282 61.111 0.61 0.00 45.37 5.68
2589 4367 2.281900 GGCCAACCAACTACGCCA 60.282 61.111 0.00 0.00 39.50 5.69
2590 4368 2.622962 GGCCAACCAACTACGCCAC 61.623 63.158 0.00 0.00 39.50 5.01
2591 4369 2.961669 GCCAACCAACTACGCCACG 61.962 63.158 0.00 0.00 0.00 4.94
2592 4370 1.595929 CCAACCAACTACGCCACGT 60.596 57.895 0.00 0.00 44.35 4.49
2593 4371 1.567537 CAACCAACTACGCCACGTG 59.432 57.895 9.08 9.08 41.39 4.49
2594 4372 1.595929 AACCAACTACGCCACGTGG 60.596 57.895 30.66 30.66 43.66 4.94
2621 4399 2.975799 GTTGGCCGCGGTGAGAAA 60.976 61.111 28.70 11.29 0.00 2.52
2622 4400 2.033448 TTGGCCGCGGTGAGAAAT 59.967 55.556 28.70 0.00 0.00 2.17
2623 4401 2.038269 TTGGCCGCGGTGAGAAATC 61.038 57.895 28.70 6.82 0.00 2.17
2624 4402 2.125106 GGCCGCGGTGAGAAATCT 60.125 61.111 28.70 0.00 0.00 2.40
2625 4403 1.745489 GGCCGCGGTGAGAAATCTT 60.745 57.895 28.70 0.00 0.00 2.40
2626 4404 1.305930 GGCCGCGGTGAGAAATCTTT 61.306 55.000 28.70 0.00 0.00 2.52
2627 4405 0.521735 GCCGCGGTGAGAAATCTTTT 59.478 50.000 28.70 0.00 0.00 2.27
2628 4406 1.729149 GCCGCGGTGAGAAATCTTTTG 60.729 52.381 28.70 0.00 0.00 2.44
2629 4407 1.606606 CGCGGTGAGAAATCTTTTGC 58.393 50.000 0.00 0.00 0.00 3.68
2630 4408 1.069296 CGCGGTGAGAAATCTTTTGCA 60.069 47.619 0.00 0.00 0.00 4.08
2631 4409 2.604373 CGCGGTGAGAAATCTTTTGCAA 60.604 45.455 0.00 0.00 0.00 4.08
2632 4410 2.726241 GCGGTGAGAAATCTTTTGCAAC 59.274 45.455 0.00 0.00 0.00 4.17
2633 4411 3.550842 GCGGTGAGAAATCTTTTGCAACT 60.551 43.478 0.00 0.00 0.00 3.16
2634 4412 4.610945 CGGTGAGAAATCTTTTGCAACTT 58.389 39.130 0.00 0.00 0.00 2.66
2635 4413 5.043248 CGGTGAGAAATCTTTTGCAACTTT 58.957 37.500 0.00 0.00 0.00 2.66
2636 4414 5.519927 CGGTGAGAAATCTTTTGCAACTTTT 59.480 36.000 0.00 0.00 0.00 2.27
2637 4415 6.035975 CGGTGAGAAATCTTTTGCAACTTTTT 59.964 34.615 0.00 0.00 0.00 1.94
2693 4471 9.512588 ACATATTTTTAGATGGAGATGATGACC 57.487 33.333 0.00 0.00 0.00 4.02
2694 4472 9.736414 CATATTTTTAGATGGAGATGATGACCT 57.264 33.333 0.00 0.00 0.00 3.85
2695 4473 9.956640 ATATTTTTAGATGGAGATGATGACCTC 57.043 33.333 0.00 0.00 0.00 3.85
2696 4474 7.443302 TTTTTAGATGGAGATGATGACCTCT 57.557 36.000 0.00 0.00 0.00 3.69
2697 4475 6.416631 TTTAGATGGAGATGATGACCTCTG 57.583 41.667 0.00 0.00 0.00 3.35
2698 4476 3.241156 AGATGGAGATGATGACCTCTGG 58.759 50.000 0.00 0.00 0.00 3.86
2699 4477 2.557555 TGGAGATGATGACCTCTGGT 57.442 50.000 0.00 0.00 39.44 4.00
2700 4478 3.688049 TGGAGATGATGACCTCTGGTA 57.312 47.619 0.00 0.00 35.25 3.25
2701 4479 4.204792 TGGAGATGATGACCTCTGGTAT 57.795 45.455 0.00 0.00 35.25 2.73
2702 4480 4.560739 TGGAGATGATGACCTCTGGTATT 58.439 43.478 0.00 0.00 35.25 1.89
2703 4481 4.971282 TGGAGATGATGACCTCTGGTATTT 59.029 41.667 0.00 0.00 35.25 1.40
2704 4482 5.429762 TGGAGATGATGACCTCTGGTATTTT 59.570 40.000 0.00 0.00 35.25 1.82
2705 4483 6.069440 TGGAGATGATGACCTCTGGTATTTTT 60.069 38.462 0.00 0.00 35.25 1.94
2727 4505 6.926630 TTTAAATGGAGGGTTATGCAAAGT 57.073 33.333 0.00 0.00 0.00 2.66
2728 4506 4.806640 AAATGGAGGGTTATGCAAAGTG 57.193 40.909 0.00 0.00 0.00 3.16
2729 4507 2.214376 TGGAGGGTTATGCAAAGTGG 57.786 50.000 0.00 0.00 0.00 4.00
2730 4508 0.817654 GGAGGGTTATGCAAAGTGGC 59.182 55.000 0.00 0.00 0.00 5.01
2737 4515 2.203195 TGCAAAGTGGCACTCGCT 60.203 55.556 30.33 12.89 39.25 4.93
2738 4516 2.253452 GCAAAGTGGCACTCGCTG 59.747 61.111 26.14 21.11 38.60 5.18
2739 4517 2.949106 CAAAGTGGCACTCGCTGG 59.051 61.111 22.31 0.00 38.60 4.85
2740 4518 1.893808 CAAAGTGGCACTCGCTGGT 60.894 57.895 22.31 0.07 38.60 4.00
2741 4519 0.602638 CAAAGTGGCACTCGCTGGTA 60.603 55.000 22.31 0.00 38.60 3.25
2742 4520 0.320771 AAAGTGGCACTCGCTGGTAG 60.321 55.000 22.31 0.00 38.60 3.18
2743 4521 2.125512 GTGGCACTCGCTGGTAGG 60.126 66.667 11.13 0.00 38.60 3.18
2744 4522 4.082523 TGGCACTCGCTGGTAGGC 62.083 66.667 0.00 0.00 38.60 3.93
2745 4523 3.775654 GGCACTCGCTGGTAGGCT 61.776 66.667 0.00 0.00 38.60 4.58
2746 4524 2.510238 GCACTCGCTGGTAGGCTG 60.510 66.667 0.00 0.00 34.30 4.85
2747 4525 2.185350 CACTCGCTGGTAGGCTGG 59.815 66.667 0.00 0.00 0.00 4.85
2748 4526 2.037367 ACTCGCTGGTAGGCTGGA 59.963 61.111 0.00 0.00 0.00 3.86
2749 4527 2.055042 ACTCGCTGGTAGGCTGGAG 61.055 63.158 0.00 0.00 0.00 3.86
2750 4528 2.037367 TCGCTGGTAGGCTGGAGT 59.963 61.111 0.00 0.00 0.00 3.85
2751 4529 2.185350 CGCTGGTAGGCTGGAGTG 59.815 66.667 0.00 0.00 0.00 3.51
2752 4530 2.586792 GCTGGTAGGCTGGAGTGG 59.413 66.667 0.00 0.00 0.00 4.00
2753 4531 2.294078 GCTGGTAGGCTGGAGTGGT 61.294 63.158 0.00 0.00 0.00 4.16
2754 4532 0.976073 GCTGGTAGGCTGGAGTGGTA 60.976 60.000 0.00 0.00 0.00 3.25
2755 4533 1.568504 CTGGTAGGCTGGAGTGGTAA 58.431 55.000 0.00 0.00 0.00 2.85
2756 4534 2.119495 CTGGTAGGCTGGAGTGGTAAT 58.881 52.381 0.00 0.00 0.00 1.89
2757 4535 2.505819 CTGGTAGGCTGGAGTGGTAATT 59.494 50.000 0.00 0.00 0.00 1.40
2758 4536 2.916934 TGGTAGGCTGGAGTGGTAATTT 59.083 45.455 0.00 0.00 0.00 1.82
2759 4537 3.332485 TGGTAGGCTGGAGTGGTAATTTT 59.668 43.478 0.00 0.00 0.00 1.82
2760 4538 4.202631 TGGTAGGCTGGAGTGGTAATTTTT 60.203 41.667 0.00 0.00 0.00 1.94
2838 4616 2.467566 TTTTAGACGGAGGCAAGGAC 57.532 50.000 0.00 0.00 0.00 3.85
2839 4617 1.640917 TTTAGACGGAGGCAAGGACT 58.359 50.000 0.00 0.00 0.00 3.85
2840 4618 1.640917 TTAGACGGAGGCAAGGACTT 58.359 50.000 0.00 0.00 0.00 3.01
2841 4619 1.640917 TAGACGGAGGCAAGGACTTT 58.359 50.000 0.00 0.00 0.00 2.66
2842 4620 1.640917 AGACGGAGGCAAGGACTTTA 58.359 50.000 0.00 0.00 0.00 1.85
2843 4621 2.188817 AGACGGAGGCAAGGACTTTAT 58.811 47.619 0.00 0.00 0.00 1.40
2844 4622 2.093447 AGACGGAGGCAAGGACTTTATG 60.093 50.000 0.00 0.00 0.00 1.90
2845 4623 1.628846 ACGGAGGCAAGGACTTTATGT 59.371 47.619 0.00 0.00 0.00 2.29
2846 4624 2.835764 ACGGAGGCAAGGACTTTATGTA 59.164 45.455 0.00 0.00 0.00 2.29
2847 4625 3.454812 ACGGAGGCAAGGACTTTATGTAT 59.545 43.478 0.00 0.00 0.00 2.29
2848 4626 4.080526 ACGGAGGCAAGGACTTTATGTATT 60.081 41.667 0.00 0.00 0.00 1.89
2849 4627 4.881850 CGGAGGCAAGGACTTTATGTATTT 59.118 41.667 0.00 0.00 0.00 1.40
2850 4628 5.357032 CGGAGGCAAGGACTTTATGTATTTT 59.643 40.000 0.00 0.00 0.00 1.82
2851 4629 6.127730 CGGAGGCAAGGACTTTATGTATTTTT 60.128 38.462 0.00 0.00 0.00 1.94
2879 4657 9.632807 TTAATAAAAATATGCGCACAACTTTCT 57.367 25.926 14.90 0.00 0.00 2.52
2880 4658 7.740519 ATAAAAATATGCGCACAACTTTCTC 57.259 32.000 14.90 0.00 0.00 2.87
2881 4659 5.376854 AAAATATGCGCACAACTTTCTCT 57.623 34.783 14.90 0.00 0.00 3.10
2882 4660 4.606457 AATATGCGCACAACTTTCTCTC 57.394 40.909 14.90 0.00 0.00 3.20
2883 4661 1.882912 ATGCGCACAACTTTCTCTCA 58.117 45.000 14.90 0.00 0.00 3.27
2884 4662 1.662517 TGCGCACAACTTTCTCTCAA 58.337 45.000 5.66 0.00 0.00 3.02
2885 4663 1.599071 TGCGCACAACTTTCTCTCAAG 59.401 47.619 5.66 0.00 0.00 3.02
2886 4664 1.661460 GCGCACAACTTTCTCTCAAGC 60.661 52.381 0.30 0.00 0.00 4.01
2887 4665 1.397693 CGCACAACTTTCTCTCAAGCG 60.398 52.381 0.00 0.00 36.62 4.68
2888 4666 1.069636 GCACAACTTTCTCTCAAGCGG 60.070 52.381 0.00 0.00 0.00 5.52
2889 4667 1.069636 CACAACTTTCTCTCAAGCGGC 60.070 52.381 0.00 0.00 0.00 6.53
2890 4668 0.164647 CAACTTTCTCTCAAGCGGCG 59.835 55.000 0.51 0.51 0.00 6.46
2891 4669 1.569479 AACTTTCTCTCAAGCGGCGC 61.569 55.000 26.86 26.86 0.00 6.53
2892 4670 2.742372 TTTCTCTCAAGCGGCGCC 60.742 61.111 30.40 19.07 0.00 6.53
2893 4671 3.529341 TTTCTCTCAAGCGGCGCCA 62.529 57.895 30.40 12.20 0.00 5.69
2894 4672 4.742201 TCTCTCAAGCGGCGCCAC 62.742 66.667 30.40 18.62 0.00 5.01
2914 4692 2.590092 GGTAGCGCCCCAATCACT 59.410 61.111 2.29 0.00 0.00 3.41
2915 4693 1.827394 GGTAGCGCCCCAATCACTA 59.173 57.895 2.29 0.00 0.00 2.74
2916 4694 0.249911 GGTAGCGCCCCAATCACTAG 60.250 60.000 2.29 0.00 0.00 2.57
2933 4711 9.046296 CAATCACTAGTCTTAATAAATCGGCTT 57.954 33.333 0.00 0.00 0.00 4.35
2945 4723 1.904287 ATCGGCTTTGTAAGTGCCAA 58.096 45.000 0.00 0.00 46.39 4.52
2966 4744 0.604578 TACCGCAGTTACCTCCACAC 59.395 55.000 0.00 0.00 0.00 3.82
2974 4752 5.234329 CGCAGTTACCTCCACACATATTTAG 59.766 44.000 0.00 0.00 0.00 1.85
2983 4761 7.673926 ACCTCCACACATATTTAGGATGTTTTT 59.326 33.333 0.00 0.00 35.31 1.94
3029 4812 6.282568 ACTATGTAGAGTGATACCTTCCCT 57.717 41.667 0.00 0.00 0.00 4.20
3038 4821 5.091552 AGTGATACCTTCCCTAGTGTTCAA 58.908 41.667 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.980698 ATCTGATCGATAGTGTGCAAAAG 57.019 39.130 0.00 0.00 37.40 2.27
2 3 8.437360 AATTTATCTGATCGATAGTGTGCAAA 57.563 30.769 0.00 0.00 36.06 3.68
3 4 8.437360 AAATTTATCTGATCGATAGTGTGCAA 57.563 30.769 0.00 0.00 36.06 4.08
4 5 9.541143 TTAAATTTATCTGATCGATAGTGTGCA 57.459 29.630 0.00 0.00 36.06 4.57
17 18 6.112734 TCAGCCGCTCTTTAAATTTATCTGA 58.887 36.000 0.00 0.00 0.00 3.27
37 38 5.662211 AAATGTGCAAGTCAAAATTCAGC 57.338 34.783 0.00 0.00 0.00 4.26
142 145 7.051000 AGTTCTTATCCTGAAGCTTATTGTCC 58.949 38.462 0.00 0.00 0.00 4.02
344 2037 6.194235 TCACCATTCAGTAAATATGGGCTTT 58.806 36.000 0.00 0.00 42.49 3.51
400 2094 1.112916 AAAAAGCCAACCAGACCCCG 61.113 55.000 0.00 0.00 0.00 5.73
468 2162 2.532250 ACCATCCAAATCCTTCCCAC 57.468 50.000 0.00 0.00 0.00 4.61
493 2187 1.136305 TCGGCAGTGTCCAGTAATAGC 59.864 52.381 4.76 0.00 0.00 2.97
496 2190 1.899814 TCTTCGGCAGTGTCCAGTAAT 59.100 47.619 4.76 0.00 0.00 1.89
501 2195 1.621317 TGTTATCTTCGGCAGTGTCCA 59.379 47.619 4.76 0.00 0.00 4.02
563 2261 3.556543 AAATGCCCGTGCGTTGCAG 62.557 57.895 0.00 0.00 45.88 4.41
622 2320 9.455847 GTCTCTAGTTAGTCTCGTTTGTAAAAA 57.544 33.333 0.00 0.00 0.00 1.94
623 2321 8.078596 GGTCTCTAGTTAGTCTCGTTTGTAAAA 58.921 37.037 0.00 0.00 0.00 1.52
624 2322 7.571983 CGGTCTCTAGTTAGTCTCGTTTGTAAA 60.572 40.741 0.00 0.00 0.00 2.01
625 2323 6.128445 CGGTCTCTAGTTAGTCTCGTTTGTAA 60.128 42.308 0.00 0.00 0.00 2.41
626 2324 5.349817 CGGTCTCTAGTTAGTCTCGTTTGTA 59.650 44.000 0.00 0.00 0.00 2.41
627 2325 4.153835 CGGTCTCTAGTTAGTCTCGTTTGT 59.846 45.833 0.00 0.00 0.00 2.83
628 2326 4.437121 CCGGTCTCTAGTTAGTCTCGTTTG 60.437 50.000 0.00 0.00 0.00 2.93
629 2327 3.688673 CCGGTCTCTAGTTAGTCTCGTTT 59.311 47.826 0.00 0.00 0.00 3.60
630 2328 3.269178 CCGGTCTCTAGTTAGTCTCGTT 58.731 50.000 0.00 0.00 0.00 3.85
631 2329 2.903798 CCGGTCTCTAGTTAGTCTCGT 58.096 52.381 0.00 0.00 0.00 4.18
632 2330 1.598601 GCCGGTCTCTAGTTAGTCTCG 59.401 57.143 1.90 0.00 0.00 4.04
633 2331 2.921821 AGCCGGTCTCTAGTTAGTCTC 58.078 52.381 1.90 0.00 0.00 3.36
634 2332 4.500499 TTAGCCGGTCTCTAGTTAGTCT 57.500 45.455 1.90 0.00 0.00 3.24
635 2333 5.573337 TTTTAGCCGGTCTCTAGTTAGTC 57.427 43.478 1.90 0.00 0.00 2.59
636 2334 4.142204 GCTTTTAGCCGGTCTCTAGTTAGT 60.142 45.833 1.90 0.00 34.48 2.24
637 2335 4.098196 AGCTTTTAGCCGGTCTCTAGTTAG 59.902 45.833 1.90 0.00 43.77 2.34
638 2336 4.021916 AGCTTTTAGCCGGTCTCTAGTTA 58.978 43.478 1.90 0.00 43.77 2.24
639 2337 2.832733 AGCTTTTAGCCGGTCTCTAGTT 59.167 45.455 1.90 0.00 43.77 2.24
640 2338 2.458620 AGCTTTTAGCCGGTCTCTAGT 58.541 47.619 1.90 0.00 43.77 2.57
641 2339 3.633065 AGTAGCTTTTAGCCGGTCTCTAG 59.367 47.826 1.90 0.00 43.77 2.43
642 2340 3.629087 AGTAGCTTTTAGCCGGTCTCTA 58.371 45.455 1.90 0.00 43.77 2.43
643 2341 2.427812 GAGTAGCTTTTAGCCGGTCTCT 59.572 50.000 1.90 0.00 43.77 3.10
644 2342 2.427812 AGAGTAGCTTTTAGCCGGTCTC 59.572 50.000 1.90 0.00 43.77 3.36
645 2343 2.458620 AGAGTAGCTTTTAGCCGGTCT 58.541 47.619 1.90 3.10 43.77 3.85
646 2344 2.963548 AGAGTAGCTTTTAGCCGGTC 57.036 50.000 1.90 0.00 43.77 4.79
647 2345 2.429971 GGTAGAGTAGCTTTTAGCCGGT 59.570 50.000 1.90 0.00 43.77 5.28
648 2346 2.694109 AGGTAGAGTAGCTTTTAGCCGG 59.306 50.000 0.00 0.00 43.77 6.13
649 2347 5.163581 TGTTAGGTAGAGTAGCTTTTAGCCG 60.164 44.000 0.00 0.00 43.77 5.52
650 2348 6.218108 TGTTAGGTAGAGTAGCTTTTAGCC 57.782 41.667 0.00 0.00 43.77 3.93
651 2349 5.749588 GCTGTTAGGTAGAGTAGCTTTTAGC 59.250 44.000 0.00 0.00 42.84 3.09
652 2350 5.972382 CGCTGTTAGGTAGAGTAGCTTTTAG 59.028 44.000 0.00 0.00 37.70 1.85
653 2351 5.416952 ACGCTGTTAGGTAGAGTAGCTTTTA 59.583 40.000 0.00 0.00 37.70 1.52
654 2352 4.220163 ACGCTGTTAGGTAGAGTAGCTTTT 59.780 41.667 0.00 0.00 37.70 2.27
655 2353 3.762823 ACGCTGTTAGGTAGAGTAGCTTT 59.237 43.478 0.00 0.00 37.70 3.51
656 2354 3.354467 ACGCTGTTAGGTAGAGTAGCTT 58.646 45.455 0.00 0.00 37.70 3.74
657 2355 3.002038 ACGCTGTTAGGTAGAGTAGCT 57.998 47.619 0.00 0.00 40.14 3.32
658 2356 3.876320 AGTACGCTGTTAGGTAGAGTAGC 59.124 47.826 0.00 0.00 32.40 3.58
659 2357 5.114780 TCAGTACGCTGTTAGGTAGAGTAG 58.885 45.833 0.00 0.00 43.05 2.57
660 2358 5.089970 TCAGTACGCTGTTAGGTAGAGTA 57.910 43.478 0.00 0.00 43.05 2.59
661 2359 3.947868 TCAGTACGCTGTTAGGTAGAGT 58.052 45.455 0.00 0.00 43.05 3.24
662 2360 5.066117 TGAATCAGTACGCTGTTAGGTAGAG 59.934 44.000 0.00 0.00 43.05 2.43
663 2361 4.945543 TGAATCAGTACGCTGTTAGGTAGA 59.054 41.667 0.00 0.00 43.05 2.59
664 2362 5.244785 TGAATCAGTACGCTGTTAGGTAG 57.755 43.478 0.00 0.00 43.05 3.18
665 2363 5.648178 TTGAATCAGTACGCTGTTAGGTA 57.352 39.130 0.00 0.00 43.05 3.08
666 2364 4.530710 TTGAATCAGTACGCTGTTAGGT 57.469 40.909 0.00 0.00 43.05 3.08
667 2365 4.092968 GGTTTGAATCAGTACGCTGTTAGG 59.907 45.833 0.00 0.00 43.05 2.69
668 2366 4.929808 AGGTTTGAATCAGTACGCTGTTAG 59.070 41.667 0.00 0.00 43.05 2.34
669 2367 4.890088 AGGTTTGAATCAGTACGCTGTTA 58.110 39.130 0.00 0.00 43.05 2.41
670 2368 3.740115 AGGTTTGAATCAGTACGCTGTT 58.260 40.909 0.00 0.00 43.05 3.16
671 2369 3.006967 AGAGGTTTGAATCAGTACGCTGT 59.993 43.478 0.00 0.00 43.05 4.40
672 2370 3.589988 AGAGGTTTGAATCAGTACGCTG 58.410 45.455 0.00 0.00 43.87 5.18
673 2371 3.963428 AGAGGTTTGAATCAGTACGCT 57.037 42.857 0.00 0.00 0.00 5.07
674 2372 5.460419 CAGATAGAGGTTTGAATCAGTACGC 59.540 44.000 0.00 0.00 0.00 4.42
675 2373 6.565234 ACAGATAGAGGTTTGAATCAGTACG 58.435 40.000 0.00 0.00 0.00 3.67
676 2374 7.704472 CAGACAGATAGAGGTTTGAATCAGTAC 59.296 40.741 0.00 0.00 0.00 2.73
677 2375 7.397476 ACAGACAGATAGAGGTTTGAATCAGTA 59.603 37.037 0.00 0.00 0.00 2.74
678 2376 6.212388 ACAGACAGATAGAGGTTTGAATCAGT 59.788 38.462 0.00 0.00 0.00 3.41
679 2377 6.638610 ACAGACAGATAGAGGTTTGAATCAG 58.361 40.000 0.00 0.00 0.00 2.90
680 2378 6.438741 AGACAGACAGATAGAGGTTTGAATCA 59.561 38.462 0.00 0.00 0.00 2.57
681 2379 6.756074 CAGACAGACAGATAGAGGTTTGAATC 59.244 42.308 0.00 0.00 0.00 2.52
682 2380 6.212388 ACAGACAGACAGATAGAGGTTTGAAT 59.788 38.462 0.00 0.00 0.00 2.57
683 2381 5.540337 ACAGACAGACAGATAGAGGTTTGAA 59.460 40.000 0.00 0.00 0.00 2.69
684 2382 5.080337 ACAGACAGACAGATAGAGGTTTGA 58.920 41.667 0.00 0.00 0.00 2.69
685 2383 5.184864 AGACAGACAGACAGATAGAGGTTTG 59.815 44.000 0.00 0.00 0.00 2.93
686 2384 5.184864 CAGACAGACAGACAGATAGAGGTTT 59.815 44.000 0.00 0.00 0.00 3.27
687 2385 4.704540 CAGACAGACAGACAGATAGAGGTT 59.295 45.833 0.00 0.00 0.00 3.50
688 2386 4.263727 ACAGACAGACAGACAGATAGAGGT 60.264 45.833 0.00 0.00 0.00 3.85
689 2387 4.269183 ACAGACAGACAGACAGATAGAGG 58.731 47.826 0.00 0.00 0.00 3.69
690 2388 5.065090 CAGACAGACAGACAGACAGATAGAG 59.935 48.000 0.00 0.00 0.00 2.43
691 2389 4.940654 CAGACAGACAGACAGACAGATAGA 59.059 45.833 0.00 0.00 0.00 1.98
692 2390 4.699735 ACAGACAGACAGACAGACAGATAG 59.300 45.833 0.00 0.00 0.00 2.08
693 2391 4.657013 ACAGACAGACAGACAGACAGATA 58.343 43.478 0.00 0.00 0.00 1.98
694 2392 3.495331 ACAGACAGACAGACAGACAGAT 58.505 45.455 0.00 0.00 0.00 2.90
695 2393 2.881513 GACAGACAGACAGACAGACAGA 59.118 50.000 0.00 0.00 0.00 3.41
696 2394 2.620585 TGACAGACAGACAGACAGACAG 59.379 50.000 0.00 0.00 0.00 3.51
697 2395 2.359214 GTGACAGACAGACAGACAGACA 59.641 50.000 0.00 0.00 0.00 3.41
698 2396 2.603412 CGTGACAGACAGACAGACAGAC 60.603 54.545 0.00 0.00 0.00 3.51
699 2397 1.604278 CGTGACAGACAGACAGACAGA 59.396 52.381 0.00 0.00 0.00 3.41
700 2398 1.335182 ACGTGACAGACAGACAGACAG 59.665 52.381 0.00 0.00 0.00 3.51
701 2399 1.065551 CACGTGACAGACAGACAGACA 59.934 52.381 10.90 0.00 0.00 3.41
702 2400 1.759994 CACGTGACAGACAGACAGAC 58.240 55.000 10.90 0.00 0.00 3.51
703 2401 0.030773 GCACGTGACAGACAGACAGA 59.969 55.000 22.23 0.00 0.00 3.41
704 2402 0.249031 TGCACGTGACAGACAGACAG 60.249 55.000 22.23 0.00 0.00 3.51
705 2403 0.389025 ATGCACGTGACAGACAGACA 59.611 50.000 22.23 4.28 0.00 3.41
706 2404 2.347697 TATGCACGTGACAGACAGAC 57.652 50.000 22.23 0.00 0.00 3.51
707 2405 4.918810 ATATATGCACGTGACAGACAGA 57.081 40.909 22.23 4.67 0.00 3.41
708 2406 6.623223 CATATATATGCACGTGACAGACAG 57.377 41.667 22.23 0.00 0.00 3.51
745 2443 1.153229 GCCTGGACAATCGGGGTAC 60.153 63.158 0.00 0.00 33.82 3.34
746 2444 1.613928 TGCCTGGACAATCGGGGTA 60.614 57.895 0.00 0.00 33.82 3.69
747 2445 2.933287 TGCCTGGACAATCGGGGT 60.933 61.111 0.00 0.00 33.82 4.95
748 2446 2.124570 CTGCCTGGACAATCGGGG 60.125 66.667 0.00 0.00 33.82 5.73
749 2447 1.971505 TAGCTGCCTGGACAATCGGG 61.972 60.000 0.00 0.00 36.28 5.14
750 2448 0.811616 GTAGCTGCCTGGACAATCGG 60.812 60.000 0.00 0.00 0.00 4.18
751 2449 0.811616 GGTAGCTGCCTGGACAATCG 60.812 60.000 14.43 0.00 0.00 3.34
752 2450 0.253044 TGGTAGCTGCCTGGACAATC 59.747 55.000 22.25 0.00 0.00 2.67
753 2451 0.254178 CTGGTAGCTGCCTGGACAAT 59.746 55.000 22.25 0.00 0.00 2.71
754 2452 1.679311 CTGGTAGCTGCCTGGACAA 59.321 57.895 22.25 0.00 0.00 3.18
755 2453 2.293318 CCTGGTAGCTGCCTGGACA 61.293 63.158 34.14 9.16 46.74 4.02
756 2454 2.586792 CCTGGTAGCTGCCTGGAC 59.413 66.667 34.14 7.22 46.74 4.02
758 2456 0.678048 GTTTCCTGGTAGCTGCCTGG 60.678 60.000 32.51 32.51 45.62 4.45
759 2457 0.036732 TGTTTCCTGGTAGCTGCCTG 59.963 55.000 22.25 20.50 0.00 4.85
760 2458 0.995024 ATGTTTCCTGGTAGCTGCCT 59.005 50.000 22.25 0.00 0.00 4.75
761 2459 1.383523 GATGTTTCCTGGTAGCTGCC 58.616 55.000 14.87 14.87 0.00 4.85
762 2460 1.009829 CGATGTTTCCTGGTAGCTGC 58.990 55.000 0.00 0.00 0.00 5.25
763 2461 2.093973 AGACGATGTTTCCTGGTAGCTG 60.094 50.000 0.00 0.00 0.00 4.24
764 2462 2.180276 AGACGATGTTTCCTGGTAGCT 58.820 47.619 0.00 0.00 0.00 3.32
765 2463 2.673368 CAAGACGATGTTTCCTGGTAGC 59.327 50.000 0.00 0.00 0.00 3.58
766 2464 4.188247 TCAAGACGATGTTTCCTGGTAG 57.812 45.455 0.00 0.00 0.00 3.18
767 2465 4.282449 TCTTCAAGACGATGTTTCCTGGTA 59.718 41.667 0.00 0.00 0.00 3.25
768 2466 3.071023 TCTTCAAGACGATGTTTCCTGGT 59.929 43.478 0.00 0.00 0.00 4.00
769 2467 3.433615 GTCTTCAAGACGATGTTTCCTGG 59.566 47.826 0.65 0.00 35.28 4.45
770 2468 4.653806 GTCTTCAAGACGATGTTTCCTG 57.346 45.455 0.65 0.00 35.28 3.86
781 2479 3.312697 GTGGTGGTTCAAGTCTTCAAGAC 59.687 47.826 9.78 9.78 45.38 3.01
782 2480 3.054728 TGTGGTGGTTCAAGTCTTCAAGA 60.055 43.478 0.00 0.00 0.00 3.02
783 2481 3.278574 TGTGGTGGTTCAAGTCTTCAAG 58.721 45.455 0.00 0.00 0.00 3.02
784 2482 3.358111 TGTGGTGGTTCAAGTCTTCAA 57.642 42.857 0.00 0.00 0.00 2.69
785 2483 3.358111 TTGTGGTGGTTCAAGTCTTCA 57.642 42.857 0.00 0.00 0.00 3.02
786 2484 4.918810 ATTTGTGGTGGTTCAAGTCTTC 57.081 40.909 0.00 0.00 0.00 2.87
787 2485 5.891551 AGTAATTTGTGGTGGTTCAAGTCTT 59.108 36.000 0.00 0.00 0.00 3.01
788 2486 5.445964 AGTAATTTGTGGTGGTTCAAGTCT 58.554 37.500 0.00 0.00 0.00 3.24
789 2487 5.767816 AGTAATTTGTGGTGGTTCAAGTC 57.232 39.130 0.00 0.00 0.00 3.01
790 2488 6.538945 AAAGTAATTTGTGGTGGTTCAAGT 57.461 33.333 0.00 0.00 0.00 3.16
791 2489 7.812669 GGATAAAGTAATTTGTGGTGGTTCAAG 59.187 37.037 0.00 0.00 0.00 3.02
792 2490 7.522399 CGGATAAAGTAATTTGTGGTGGTTCAA 60.522 37.037 0.00 0.00 0.00 2.69
793 2491 6.072397 CGGATAAAGTAATTTGTGGTGGTTCA 60.072 38.462 0.00 0.00 0.00 3.18
794 2492 6.149807 TCGGATAAAGTAATTTGTGGTGGTTC 59.850 38.462 0.00 0.00 0.00 3.62
795 2493 6.005198 TCGGATAAAGTAATTTGTGGTGGTT 58.995 36.000 0.00 0.00 0.00 3.67
796 2494 5.562635 TCGGATAAAGTAATTTGTGGTGGT 58.437 37.500 0.00 0.00 0.00 4.16
797 2495 5.065988 CCTCGGATAAAGTAATTTGTGGTGG 59.934 44.000 0.00 0.00 0.00 4.61
798 2496 5.646360 ACCTCGGATAAAGTAATTTGTGGTG 59.354 40.000 0.00 0.00 0.00 4.17
799 2497 5.812286 ACCTCGGATAAAGTAATTTGTGGT 58.188 37.500 0.00 0.00 0.00 4.16
800 2498 7.270047 TCTACCTCGGATAAAGTAATTTGTGG 58.730 38.462 0.00 0.00 0.00 4.17
801 2499 8.888579 ATCTACCTCGGATAAAGTAATTTGTG 57.111 34.615 0.00 0.00 0.00 3.33
802 2500 9.901172 AAATCTACCTCGGATAAAGTAATTTGT 57.099 29.630 0.00 0.00 0.00 2.83
809 2507 8.979534 AGTTTCTAAATCTACCTCGGATAAAGT 58.020 33.333 0.00 0.00 0.00 2.66
810 2508 9.250624 CAGTTTCTAAATCTACCTCGGATAAAG 57.749 37.037 0.00 0.00 0.00 1.85
811 2509 8.974238 TCAGTTTCTAAATCTACCTCGGATAAA 58.026 33.333 0.00 0.00 0.00 1.40
812 2510 8.411683 GTCAGTTTCTAAATCTACCTCGGATAA 58.588 37.037 0.00 0.00 0.00 1.75
813 2511 7.778853 AGTCAGTTTCTAAATCTACCTCGGATA 59.221 37.037 0.00 0.00 0.00 2.59
814 2512 6.608002 AGTCAGTTTCTAAATCTACCTCGGAT 59.392 38.462 0.00 0.00 0.00 4.18
815 2513 5.950549 AGTCAGTTTCTAAATCTACCTCGGA 59.049 40.000 0.00 0.00 0.00 4.55
816 2514 6.210287 AGTCAGTTTCTAAATCTACCTCGG 57.790 41.667 0.00 0.00 0.00 4.63
847 2545 7.550597 TCTCAGGACTCAAATATATGCTGAT 57.449 36.000 0.00 0.00 0.00 2.90
850 2548 6.499699 TGGATCTCAGGACTCAAATATATGCT 59.500 38.462 0.00 0.00 0.00 3.79
857 2555 3.434739 GGCATGGATCTCAGGACTCAAAT 60.435 47.826 0.00 0.00 31.35 2.32
859 2557 1.487976 GGCATGGATCTCAGGACTCAA 59.512 52.381 0.00 0.00 31.35 3.02
866 2564 2.431954 AGTTTGGGCATGGATCTCAG 57.568 50.000 0.00 0.00 0.00 3.35
886 2586 0.681733 TTCTGCCTTGCGAGAGAAGT 59.318 50.000 1.22 0.00 0.00 3.01
889 2589 1.080501 CGTTCTGCCTTGCGAGAGA 60.081 57.895 1.22 0.00 0.00 3.10
962 2677 1.411977 TGGGTGGACTGCAATGTTTTG 59.588 47.619 0.00 0.00 35.85 2.44
1057 2774 4.415332 GACGTTGGCGAGCTCCGA 62.415 66.667 14.91 0.00 41.76 4.55
1081 2798 1.138883 TGACGTCGTAGCCATGCTC 59.861 57.895 11.62 0.00 40.44 4.26
1247 2965 0.392336 GAGCTGGAGCATGAGTAGGG 59.608 60.000 0.00 0.00 45.16 3.53
1322 3041 5.469667 GTCGAGGATGACAGAGTGCAACT 62.470 52.174 0.00 0.00 44.49 3.16
1323 3042 1.067565 TCGAGGATGACAGAGTGCAAC 60.068 52.381 0.00 0.00 0.00 4.17
1695 3423 1.137872 CAGTAGATCGGAGGCAGCTTT 59.862 52.381 0.00 0.00 0.00 3.51
1750 3478 4.245660 TCGTTCCTCTCTGCTTTGTAATG 58.754 43.478 0.00 0.00 0.00 1.90
1752 3480 3.321111 ACTCGTTCCTCTCTGCTTTGTAA 59.679 43.478 0.00 0.00 0.00 2.41
1753 3484 2.891580 ACTCGTTCCTCTCTGCTTTGTA 59.108 45.455 0.00 0.00 0.00 2.41
1812 3549 0.395312 TCCCGAAACAGAGGAACACC 59.605 55.000 0.00 0.00 0.00 4.16
1967 3735 1.065418 CCCTTTGTCCGCTGTAGGAAT 60.065 52.381 0.00 0.00 42.77 3.01
1974 3742 3.058160 CCTGCCCTTTGTCCGCTG 61.058 66.667 0.00 0.00 0.00 5.18
1997 3765 2.028484 GCCCACGACTTGACGACA 59.972 61.111 0.00 0.00 37.03 4.35
2184 3955 2.288702 CCATGTATTCCTCCAGCTCGAG 60.289 54.545 8.45 8.45 0.00 4.04
2197 3968 5.011533 TGCCTTACAAAACTTGCCATGTATT 59.988 36.000 0.00 0.00 0.00 1.89
2208 3979 2.711547 ACCTCCTCTGCCTTACAAAACT 59.288 45.455 0.00 0.00 0.00 2.66
2358 4130 1.473278 TGTCCACGTCCAACAAAAACC 59.527 47.619 0.00 0.00 0.00 3.27
2363 4135 2.489971 GAGATTGTCCACGTCCAACAA 58.510 47.619 8.77 8.77 37.32 2.83
2429 4201 8.038944 AGAAACATATACGTAGAAGGCAAAGAA 58.961 33.333 0.08 0.00 0.00 2.52
2453 4225 4.232091 ACAAGAGGGAAACTTGGACTAGA 58.768 43.478 0.00 0.00 45.92 2.43
2484 4256 2.935849 CCATGCAATGCAACTACGAGTA 59.064 45.455 13.45 0.00 44.97 2.59
2485 4257 1.739466 CCATGCAATGCAACTACGAGT 59.261 47.619 13.45 0.00 44.97 4.18
2486 4258 1.739466 ACCATGCAATGCAACTACGAG 59.261 47.619 13.45 0.00 44.97 4.18
2487 4259 1.737236 GACCATGCAATGCAACTACGA 59.263 47.619 13.45 0.00 44.97 3.43
2488 4260 1.468127 TGACCATGCAATGCAACTACG 59.532 47.619 13.45 0.34 44.97 3.51
2489 4261 3.574284 TTGACCATGCAATGCAACTAC 57.426 42.857 13.45 5.49 44.97 2.73
2492 4264 2.669434 GTGATTGACCATGCAATGCAAC 59.331 45.455 13.45 5.13 44.97 4.17
2505 4277 5.862924 TGCTAGCAAGTTAAGTGATTGAC 57.137 39.130 16.84 0.00 0.00 3.18
2521 4293 4.108902 TGCTACGCACATGCTAGC 57.891 55.556 19.70 19.70 42.55 3.42
2532 4310 6.252655 GCTTAATGGTTTTAAATGGTGCTACG 59.747 38.462 0.00 0.00 0.00 3.51
2557 4335 4.814294 GCCACCCTCCACGCGTAG 62.814 72.222 13.44 4.25 0.00 3.51
2563 4341 3.444818 TTGGTTGGCCACCCTCCAC 62.445 63.158 21.42 7.72 46.68 4.02
2564 4342 3.106609 TTGGTTGGCCACCCTCCA 61.107 61.111 21.42 16.18 46.68 3.86
2565 4343 1.785353 TAGTTGGTTGGCCACCCTCC 61.785 60.000 21.42 13.81 46.68 4.30
2566 4344 0.608308 GTAGTTGGTTGGCCACCCTC 60.608 60.000 21.42 13.29 46.68 4.30
2567 4345 1.458927 GTAGTTGGTTGGCCACCCT 59.541 57.895 21.42 13.08 46.68 4.34
2568 4346 1.969589 CGTAGTTGGTTGGCCACCC 60.970 63.158 13.50 13.50 46.68 4.61
2569 4347 2.622962 GCGTAGTTGGTTGGCCACC 61.623 63.158 3.88 11.51 46.01 4.61
2570 4348 2.622962 GGCGTAGTTGGTTGGCCAC 61.623 63.158 3.88 0.00 46.01 5.01
2571 4349 2.281900 GGCGTAGTTGGTTGGCCA 60.282 61.111 0.00 0.00 43.23 5.36
2572 4350 2.281900 TGGCGTAGTTGGTTGGCC 60.282 61.111 0.00 0.00 44.00 5.36
2573 4351 2.951458 GTGGCGTAGTTGGTTGGC 59.049 61.111 0.00 0.00 0.00 4.52
2574 4352 1.595929 ACGTGGCGTAGTTGGTTGG 60.596 57.895 0.00 0.00 38.73 3.77
2575 4353 1.567537 CACGTGGCGTAGTTGGTTG 59.432 57.895 7.95 0.00 38.32 3.77
2576 4354 1.595929 CCACGTGGCGTAGTTGGTT 60.596 57.895 24.02 0.00 38.32 3.67
2577 4355 2.029964 CCACGTGGCGTAGTTGGT 59.970 61.111 24.02 0.00 38.32 3.67
2590 4368 4.688419 CAACCAGCTTGCGCCACG 62.688 66.667 4.18 0.00 36.60 4.94
2591 4369 4.347453 CCAACCAGCTTGCGCCAC 62.347 66.667 4.18 0.00 36.60 5.01
2604 4382 2.253414 GATTTCTCACCGCGGCCAAC 62.253 60.000 28.58 5.00 0.00 3.77
2605 4383 2.033448 ATTTCTCACCGCGGCCAA 59.967 55.556 28.58 11.39 0.00 4.52
2606 4384 2.435938 GATTTCTCACCGCGGCCA 60.436 61.111 28.58 11.32 0.00 5.36
2607 4385 1.305930 AAAGATTTCTCACCGCGGCC 61.306 55.000 28.58 4.16 0.00 6.13
2608 4386 0.521735 AAAAGATTTCTCACCGCGGC 59.478 50.000 28.58 5.95 0.00 6.53
2609 4387 1.729149 GCAAAAGATTTCTCACCGCGG 60.729 52.381 26.86 26.86 0.00 6.46
2610 4388 1.069296 TGCAAAAGATTTCTCACCGCG 60.069 47.619 0.00 0.00 0.00 6.46
2611 4389 2.704725 TGCAAAAGATTTCTCACCGC 57.295 45.000 0.00 0.00 0.00 5.68
2612 4390 4.228912 AGTTGCAAAAGATTTCTCACCG 57.771 40.909 0.00 0.00 0.00 4.94
2613 4391 6.908870 AAAAGTTGCAAAAGATTTCTCACC 57.091 33.333 0.00 0.00 0.00 4.02
2667 4445 9.512588 GGTCATCATCTCCATCTAAAAATATGT 57.487 33.333 0.00 0.00 0.00 2.29
2668 4446 9.736414 AGGTCATCATCTCCATCTAAAAATATG 57.264 33.333 0.00 0.00 0.00 1.78
2669 4447 9.956640 GAGGTCATCATCTCCATCTAAAAATAT 57.043 33.333 0.00 0.00 0.00 1.28
2670 4448 9.163894 AGAGGTCATCATCTCCATCTAAAAATA 57.836 33.333 0.00 0.00 27.79 1.40
2671 4449 7.937942 CAGAGGTCATCATCTCCATCTAAAAAT 59.062 37.037 0.00 0.00 32.08 1.82
2672 4450 7.278135 CAGAGGTCATCATCTCCATCTAAAAA 58.722 38.462 0.00 0.00 32.08 1.94
2673 4451 6.183361 CCAGAGGTCATCATCTCCATCTAAAA 60.183 42.308 0.00 0.00 32.08 1.52
2674 4452 5.306419 CCAGAGGTCATCATCTCCATCTAAA 59.694 44.000 0.00 0.00 32.08 1.85
2675 4453 4.837298 CCAGAGGTCATCATCTCCATCTAA 59.163 45.833 0.00 0.00 32.08 2.10
2676 4454 4.140829 ACCAGAGGTCATCATCTCCATCTA 60.141 45.833 0.00 0.00 32.08 1.98
2677 4455 3.241156 CCAGAGGTCATCATCTCCATCT 58.759 50.000 0.00 0.00 32.08 2.90
2678 4456 2.971330 ACCAGAGGTCATCATCTCCATC 59.029 50.000 0.00 0.00 32.08 3.51
2679 4457 3.057626 ACCAGAGGTCATCATCTCCAT 57.942 47.619 0.00 0.00 32.08 3.41
2680 4458 2.557555 ACCAGAGGTCATCATCTCCA 57.442 50.000 0.00 0.00 32.08 3.86
2681 4459 5.559148 AAATACCAGAGGTCATCATCTCC 57.441 43.478 0.00 0.00 37.09 3.71
2702 4480 7.659390 CACTTTGCATAACCCTCCATTTAAAAA 59.341 33.333 0.00 0.00 0.00 1.94
2703 4481 7.158021 CACTTTGCATAACCCTCCATTTAAAA 58.842 34.615 0.00 0.00 0.00 1.52
2704 4482 6.295575 CCACTTTGCATAACCCTCCATTTAAA 60.296 38.462 0.00 0.00 0.00 1.52
2705 4483 5.186797 CCACTTTGCATAACCCTCCATTTAA 59.813 40.000 0.00 0.00 0.00 1.52
2706 4484 4.709397 CCACTTTGCATAACCCTCCATTTA 59.291 41.667 0.00 0.00 0.00 1.40
2707 4485 3.515104 CCACTTTGCATAACCCTCCATTT 59.485 43.478 0.00 0.00 0.00 2.32
2708 4486 3.099141 CCACTTTGCATAACCCTCCATT 58.901 45.455 0.00 0.00 0.00 3.16
2709 4487 2.738743 CCACTTTGCATAACCCTCCAT 58.261 47.619 0.00 0.00 0.00 3.41
2710 4488 1.890573 GCCACTTTGCATAACCCTCCA 60.891 52.381 0.00 0.00 0.00 3.86
2711 4489 0.817654 GCCACTTTGCATAACCCTCC 59.182 55.000 0.00 0.00 0.00 4.30
2712 4490 1.202348 GTGCCACTTTGCATAACCCTC 59.798 52.381 0.00 0.00 44.30 4.30
2713 4491 1.203050 AGTGCCACTTTGCATAACCCT 60.203 47.619 0.00 0.00 44.30 4.34
2714 4492 1.202348 GAGTGCCACTTTGCATAACCC 59.798 52.381 0.00 0.00 44.30 4.11
2715 4493 1.135689 CGAGTGCCACTTTGCATAACC 60.136 52.381 0.00 0.00 44.30 2.85
2716 4494 1.729149 GCGAGTGCCACTTTGCATAAC 60.729 52.381 15.52 0.00 44.30 1.89
2717 4495 0.521291 GCGAGTGCCACTTTGCATAA 59.479 50.000 15.52 0.00 44.30 1.90
2718 4496 0.321564 AGCGAGTGCCACTTTGCATA 60.322 50.000 20.52 0.00 44.30 3.14
2719 4497 1.601759 AGCGAGTGCCACTTTGCAT 60.602 52.632 20.52 7.23 44.30 3.96
2720 4498 2.203195 AGCGAGTGCCACTTTGCA 60.203 55.556 20.52 0.41 44.31 4.08
2721 4499 2.253452 CAGCGAGTGCCACTTTGC 59.747 61.111 13.31 13.31 44.31 3.68
2722 4500 0.602638 TACCAGCGAGTGCCACTTTG 60.603 55.000 0.00 0.00 44.31 2.77
2723 4501 0.320771 CTACCAGCGAGTGCCACTTT 60.321 55.000 0.00 0.00 44.31 2.66
2724 4502 1.293498 CTACCAGCGAGTGCCACTT 59.707 57.895 0.00 0.00 44.31 3.16
2725 4503 2.650116 CCTACCAGCGAGTGCCACT 61.650 63.158 0.00 0.00 44.31 4.00
2726 4504 2.125512 CCTACCAGCGAGTGCCAC 60.126 66.667 0.00 0.00 44.31 5.01
2727 4505 4.082523 GCCTACCAGCGAGTGCCA 62.083 66.667 0.00 0.00 44.31 4.92
2728 4506 3.775654 AGCCTACCAGCGAGTGCC 61.776 66.667 0.00 0.00 44.31 5.01
2729 4507 2.510238 CAGCCTACCAGCGAGTGC 60.510 66.667 0.00 0.00 43.24 4.40
2730 4508 2.185350 CCAGCCTACCAGCGAGTG 59.815 66.667 0.00 0.00 38.01 3.51
2731 4509 2.037367 TCCAGCCTACCAGCGAGT 59.963 61.111 0.00 0.00 38.01 4.18
2732 4510 2.055042 ACTCCAGCCTACCAGCGAG 61.055 63.158 0.00 0.00 38.01 5.03
2733 4511 2.037367 ACTCCAGCCTACCAGCGA 59.963 61.111 0.00 0.00 38.01 4.93
2734 4512 2.185350 CACTCCAGCCTACCAGCG 59.815 66.667 0.00 0.00 38.01 5.18
2735 4513 0.976073 TACCACTCCAGCCTACCAGC 60.976 60.000 0.00 0.00 0.00 4.85
2736 4514 1.568504 TTACCACTCCAGCCTACCAG 58.431 55.000 0.00 0.00 0.00 4.00
2737 4515 2.263895 ATTACCACTCCAGCCTACCA 57.736 50.000 0.00 0.00 0.00 3.25
2738 4516 3.646736 AAATTACCACTCCAGCCTACC 57.353 47.619 0.00 0.00 0.00 3.18
2818 4596 2.370849 AGTCCTTGCCTCCGTCTAAAAA 59.629 45.455 0.00 0.00 0.00 1.94
2819 4597 1.975680 AGTCCTTGCCTCCGTCTAAAA 59.024 47.619 0.00 0.00 0.00 1.52
2820 4598 1.640917 AGTCCTTGCCTCCGTCTAAA 58.359 50.000 0.00 0.00 0.00 1.85
2821 4599 1.640917 AAGTCCTTGCCTCCGTCTAA 58.359 50.000 0.00 0.00 0.00 2.10
2822 4600 1.640917 AAAGTCCTTGCCTCCGTCTA 58.359 50.000 0.00 0.00 0.00 2.59
2823 4601 1.640917 TAAAGTCCTTGCCTCCGTCT 58.359 50.000 0.00 0.00 0.00 4.18
2824 4602 2.280628 CATAAAGTCCTTGCCTCCGTC 58.719 52.381 0.00 0.00 0.00 4.79
2825 4603 1.628846 ACATAAAGTCCTTGCCTCCGT 59.371 47.619 0.00 0.00 0.00 4.69
2826 4604 2.403252 ACATAAAGTCCTTGCCTCCG 57.597 50.000 0.00 0.00 0.00 4.63
2827 4605 6.775594 AAAATACATAAAGTCCTTGCCTCC 57.224 37.500 0.00 0.00 0.00 4.30
2853 4631 9.632807 AGAAAGTTGTGCGCATATTTTTATTAA 57.367 25.926 15.91 0.00 0.00 1.40
2854 4632 9.284594 GAGAAAGTTGTGCGCATATTTTTATTA 57.715 29.630 15.91 0.00 0.00 0.98
2855 4633 8.028938 AGAGAAAGTTGTGCGCATATTTTTATT 58.971 29.630 15.91 6.71 0.00 1.40
2856 4634 7.538575 AGAGAAAGTTGTGCGCATATTTTTAT 58.461 30.769 15.91 11.74 0.00 1.40
2857 4635 6.908825 AGAGAAAGTTGTGCGCATATTTTTA 58.091 32.000 15.91 0.00 0.00 1.52
2858 4636 5.772521 AGAGAAAGTTGTGCGCATATTTTT 58.227 33.333 15.91 14.35 0.00 1.94
2859 4637 5.048782 TGAGAGAAAGTTGTGCGCATATTTT 60.049 36.000 15.91 14.72 0.00 1.82
2860 4638 4.455533 TGAGAGAAAGTTGTGCGCATATTT 59.544 37.500 15.91 9.66 0.00 1.40
2861 4639 4.002982 TGAGAGAAAGTTGTGCGCATATT 58.997 39.130 15.91 1.34 0.00 1.28
2862 4640 3.599343 TGAGAGAAAGTTGTGCGCATAT 58.401 40.909 15.91 0.00 0.00 1.78
2863 4641 3.038788 TGAGAGAAAGTTGTGCGCATA 57.961 42.857 15.91 8.59 0.00 3.14
2864 4642 1.882912 TGAGAGAAAGTTGTGCGCAT 58.117 45.000 15.91 0.00 0.00 4.73
2865 4643 1.599071 CTTGAGAGAAAGTTGTGCGCA 59.401 47.619 5.66 5.66 0.00 6.09
2866 4644 1.661460 GCTTGAGAGAAAGTTGTGCGC 60.661 52.381 0.00 0.00 0.00 6.09
2867 4645 1.397693 CGCTTGAGAGAAAGTTGTGCG 60.398 52.381 0.00 0.00 35.22 5.34
2868 4646 1.069636 CCGCTTGAGAGAAAGTTGTGC 60.070 52.381 0.00 0.00 0.00 4.57
2869 4647 1.069636 GCCGCTTGAGAGAAAGTTGTG 60.070 52.381 0.00 0.00 0.00 3.33
2870 4648 1.230324 GCCGCTTGAGAGAAAGTTGT 58.770 50.000 0.00 0.00 0.00 3.32
2871 4649 0.164647 CGCCGCTTGAGAGAAAGTTG 59.835 55.000 0.00 0.00 0.00 3.16
2872 4650 1.569479 GCGCCGCTTGAGAGAAAGTT 61.569 55.000 0.00 0.00 0.00 2.66
2873 4651 2.029844 GCGCCGCTTGAGAGAAAGT 61.030 57.895 0.00 0.00 0.00 2.66
2874 4652 2.744768 GGCGCCGCTTGAGAGAAAG 61.745 63.158 12.58 0.00 0.00 2.62
2875 4653 2.742372 GGCGCCGCTTGAGAGAAA 60.742 61.111 12.58 0.00 0.00 2.52
2876 4654 4.002506 TGGCGCCGCTTGAGAGAA 62.003 61.111 23.90 0.00 0.00 2.87
2877 4655 4.742201 GTGGCGCCGCTTGAGAGA 62.742 66.667 32.27 2.34 0.00 3.10
2897 4675 0.249911 CTAGTGATTGGGGCGCTACC 60.250 60.000 7.64 11.32 37.93 3.18
2898 4676 0.464452 ACTAGTGATTGGGGCGCTAC 59.536 55.000 7.64 0.22 0.00 3.58
2899 4677 0.750850 GACTAGTGATTGGGGCGCTA 59.249 55.000 7.64 0.00 0.00 4.26
2900 4678 0.978146 AGACTAGTGATTGGGGCGCT 60.978 55.000 7.64 0.00 0.00 5.92
2901 4679 0.107654 AAGACTAGTGATTGGGGCGC 60.108 55.000 0.00 0.00 0.00 6.53
2902 4680 3.536956 TTAAGACTAGTGATTGGGGCG 57.463 47.619 0.00 0.00 0.00 6.13
2903 4681 7.095187 CGATTTATTAAGACTAGTGATTGGGGC 60.095 40.741 0.00 0.00 0.00 5.80
2904 4682 7.387948 CCGATTTATTAAGACTAGTGATTGGGG 59.612 40.741 0.00 0.00 0.00 4.96
2905 4683 7.095187 GCCGATTTATTAAGACTAGTGATTGGG 60.095 40.741 0.00 0.00 0.00 4.12
2906 4684 7.657761 AGCCGATTTATTAAGACTAGTGATTGG 59.342 37.037 0.00 0.00 0.00 3.16
2907 4685 8.594881 AGCCGATTTATTAAGACTAGTGATTG 57.405 34.615 0.00 0.00 0.00 2.67
2908 4686 9.614792 AAAGCCGATTTATTAAGACTAGTGATT 57.385 29.630 0.00 0.00 0.00 2.57
2909 4687 9.046296 CAAAGCCGATTTATTAAGACTAGTGAT 57.954 33.333 0.00 0.00 0.00 3.06
2910 4688 8.038944 ACAAAGCCGATTTATTAAGACTAGTGA 58.961 33.333 0.00 0.00 0.00 3.41
2911 4689 8.197988 ACAAAGCCGATTTATTAAGACTAGTG 57.802 34.615 0.00 0.00 0.00 2.74
2912 4690 9.880157 TTACAAAGCCGATTTATTAAGACTAGT 57.120 29.630 0.00 0.00 0.00 2.57
2914 4692 9.880157 ACTTACAAAGCCGATTTATTAAGACTA 57.120 29.630 13.03 0.00 33.62 2.59
2915 4693 8.665685 CACTTACAAAGCCGATTTATTAAGACT 58.334 33.333 13.03 0.00 33.62 3.24
2916 4694 7.428472 GCACTTACAAAGCCGATTTATTAAGAC 59.572 37.037 13.03 5.15 33.62 3.01
2933 4711 1.202663 TGCGGTACTTGGCACTTACAA 60.203 47.619 6.93 0.00 33.52 2.41
2983 4761 4.136796 CGATCCATTATTGCCAGGAAGAA 58.863 43.478 0.00 0.00 33.17 2.52
3029 4812 0.102663 TGTCGTGCGGTTGAACACTA 59.897 50.000 0.00 0.00 34.58 2.74
3038 4821 0.672401 CCAATACCTTGTCGTGCGGT 60.672 55.000 0.00 0.00 34.86 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.