Multiple sequence alignment - TraesCS1D01G431600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G431600 chr1D 100.000 2977 0 0 1 2977 481601789 481604765 0.000000e+00 5498.0
1 TraesCS1D01G431600 chr1B 90.834 1582 90 17 591 2124 670201833 670203407 0.000000e+00 2067.0
2 TraesCS1D01G431600 chr1B 80.924 498 54 27 158 621 670201314 670201804 3.650000e-94 355.0
3 TraesCS1D01G431600 chr1B 100.000 28 0 0 1 28 45943203 45943176 5.000000e-03 52.8
4 TraesCS1D01G431600 chr1B 100.000 28 0 0 1 28 510812164 510812137 5.000000e-03 52.8
5 TraesCS1D01G431600 chr1A 87.516 1586 146 31 692 2236 578299176 578300750 0.000000e+00 1784.0
6 TraesCS1D01G431600 chr1A 86.118 389 30 12 1967 2339 578322292 578322672 5.980000e-107 398.0
7 TraesCS1D01G431600 chr1A 100.000 29 0 0 1 29 503550823 503550795 1.000000e-03 54.7
8 TraesCS1D01G431600 chr2B 95.342 644 23 3 2335 2977 699918385 699917748 0.000000e+00 1016.0
9 TraesCS1D01G431600 chr4D 95.069 649 20 6 2333 2977 417832513 417833153 0.000000e+00 1011.0
10 TraesCS1D01G431600 chr7D 94.607 649 23 6 2333 2977 340209639 340210279 0.000000e+00 994.0
11 TraesCS1D01G431600 chr7D 82.366 448 45 17 2349 2764 611004816 611004371 2.820000e-95 359.0
12 TraesCS1D01G431600 chr2A 93.424 517 29 3 2338 2852 240765524 240765011 0.000000e+00 761.0
13 TraesCS1D01G431600 chr6A 92.678 519 33 3 2336 2852 617062539 617063054 0.000000e+00 743.0
14 TraesCS1D01G431600 chr3D 86.120 634 62 13 2337 2949 599005351 599004723 0.000000e+00 660.0
15 TraesCS1D01G431600 chr3D 87.500 160 20 0 1617 1776 309654558 309654717 5.070000e-43 185.0
16 TraesCS1D01G431600 chr3D 94.737 57 3 0 1478 1534 399380663 399380607 4.090000e-14 89.8
17 TraesCS1D01G431600 chr3D 100.000 28 0 0 1 28 65411889 65411916 5.000000e-03 52.8
18 TraesCS1D01G431600 chr2D 86.098 633 61 14 2339 2949 233704671 233704044 0.000000e+00 656.0
19 TraesCS1D01G431600 chr2D 88.722 266 21 7 2341 2604 287327060 287326802 1.720000e-82 316.0
20 TraesCS1D01G431600 chr2D 92.308 39 2 1 1 38 399352348 399352386 1.000000e-03 54.7
21 TraesCS1D01G431600 chr2D 92.105 38 3 0 1 38 525500288 525500251 1.000000e-03 54.7
22 TraesCS1D01G431600 chr2D 100.000 28 0 0 1 28 394124932 394124905 5.000000e-03 52.8
23 TraesCS1D01G431600 chr5D 85.308 633 65 16 2339 2949 22573506 22572880 1.950000e-176 628.0
24 TraesCS1D01G431600 chr5D 100.000 28 0 0 1 28 25041022 25040995 5.000000e-03 52.8
25 TraesCS1D01G431600 chr6D 86.643 569 55 10 2394 2949 376847443 376848003 7.050000e-171 610.0
26 TraesCS1D01G431600 chr6D 93.176 381 23 3 2337 2716 98751176 98751554 9.320000e-155 556.0
27 TraesCS1D01G431600 chr3A 87.500 160 20 0 1617 1776 429322432 429322591 5.070000e-43 185.0
28 TraesCS1D01G431600 chr3A 94.737 57 3 0 1478 1534 518642906 518642850 4.090000e-14 89.8
29 TraesCS1D01G431600 chr3A 92.857 56 4 0 1478 1533 510663999 510664054 6.840000e-12 82.4
30 TraesCS1D01G431600 chr3B 86.250 160 22 0 1617 1776 411844642 411844483 1.100000e-39 174.0
31 TraesCS1D01G431600 chr3B 94.737 57 3 0 1478 1534 525242663 525242607 4.090000e-14 89.8
32 TraesCS1D01G431600 chr3B 92.857 56 4 0 1478 1533 507286708 507286763 6.840000e-12 82.4
33 TraesCS1D01G431600 chr7A 100.000 29 0 0 1 29 134547378 134547406 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G431600 chr1D 481601789 481604765 2976 False 5498 5498 100.000 1 2977 1 chr1D.!!$F1 2976
1 TraesCS1D01G431600 chr1B 670201314 670203407 2093 False 1211 2067 85.879 158 2124 2 chr1B.!!$F1 1966
2 TraesCS1D01G431600 chr1A 578299176 578300750 1574 False 1784 1784 87.516 692 2236 1 chr1A.!!$F1 1544
3 TraesCS1D01G431600 chr2B 699917748 699918385 637 True 1016 1016 95.342 2335 2977 1 chr2B.!!$R1 642
4 TraesCS1D01G431600 chr4D 417832513 417833153 640 False 1011 1011 95.069 2333 2977 1 chr4D.!!$F1 644
5 TraesCS1D01G431600 chr7D 340209639 340210279 640 False 994 994 94.607 2333 2977 1 chr7D.!!$F1 644
6 TraesCS1D01G431600 chr2A 240765011 240765524 513 True 761 761 93.424 2338 2852 1 chr2A.!!$R1 514
7 TraesCS1D01G431600 chr6A 617062539 617063054 515 False 743 743 92.678 2336 2852 1 chr6A.!!$F1 516
8 TraesCS1D01G431600 chr3D 599004723 599005351 628 True 660 660 86.120 2337 2949 1 chr3D.!!$R2 612
9 TraesCS1D01G431600 chr2D 233704044 233704671 627 True 656 656 86.098 2339 2949 1 chr2D.!!$R1 610
10 TraesCS1D01G431600 chr5D 22572880 22573506 626 True 628 628 85.308 2339 2949 1 chr5D.!!$R1 610
11 TraesCS1D01G431600 chr6D 376847443 376848003 560 False 610 610 86.643 2394 2949 1 chr6D.!!$F2 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
241 246 0.108662 TCATGTGCTCGGTGCTGTAG 60.109 55.0 3.53 0.0 43.37 2.74 F
242 247 0.108662 CATGTGCTCGGTGCTGTAGA 60.109 55.0 3.53 0.0 43.37 2.59 F
1237 1387 0.249489 GGCGCCGTTCTCTATCACAT 60.249 55.0 12.58 0.0 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1560 1710 0.389296 TAATGGCGTGGTGTCGTGAG 60.389 55.0 0.00 0.0 0.0 3.51 R
1561 1711 0.389296 CTAATGGCGTGGTGTCGTGA 60.389 55.0 0.00 0.0 0.0 4.35 R
2952 3183 0.458370 GCGCGCCAATGAATTTTCCT 60.458 50.0 23.24 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.906660 TTGTCAAGTCCGGCTGTAG 57.093 52.632 0.00 0.00 0.00 2.74
19 20 1.334160 TTGTCAAGTCCGGCTGTAGA 58.666 50.000 0.00 0.00 0.00 2.59
20 21 1.557099 TGTCAAGTCCGGCTGTAGAT 58.443 50.000 0.00 0.00 0.00 1.98
21 22 1.204704 TGTCAAGTCCGGCTGTAGATG 59.795 52.381 0.00 0.00 0.00 2.90
22 23 0.175760 TCAAGTCCGGCTGTAGATGC 59.824 55.000 0.00 0.00 0.00 3.91
23 24 0.176680 CAAGTCCGGCTGTAGATGCT 59.823 55.000 0.00 0.00 0.00 3.79
24 25 0.461961 AAGTCCGGCTGTAGATGCTC 59.538 55.000 0.00 0.00 0.00 4.26
25 26 0.396417 AGTCCGGCTGTAGATGCTCT 60.396 55.000 0.00 0.00 0.00 4.09
26 27 1.133761 AGTCCGGCTGTAGATGCTCTA 60.134 52.381 0.00 0.00 0.00 2.43
27 28 1.681793 GTCCGGCTGTAGATGCTCTAA 59.318 52.381 0.00 0.00 29.58 2.10
28 29 1.957177 TCCGGCTGTAGATGCTCTAAG 59.043 52.381 0.00 0.00 29.58 2.18
29 30 1.000283 CCGGCTGTAGATGCTCTAAGG 60.000 57.143 0.00 0.00 29.58 2.69
30 31 1.604185 CGGCTGTAGATGCTCTAAGGC 60.604 57.143 12.74 12.74 33.61 4.35
31 32 1.691434 GGCTGTAGATGCTCTAAGGCT 59.309 52.381 14.05 0.00 33.86 4.58
32 33 2.103941 GGCTGTAGATGCTCTAAGGCTT 59.896 50.000 4.58 4.58 33.86 4.35
33 34 3.432890 GGCTGTAGATGCTCTAAGGCTTT 60.433 47.826 4.45 0.00 33.86 3.51
34 35 3.559242 GCTGTAGATGCTCTAAGGCTTTG 59.441 47.826 4.45 3.09 29.58 2.77
35 36 3.535561 TGTAGATGCTCTAAGGCTTTGC 58.464 45.455 4.45 8.76 29.58 3.68
36 37 2.795231 AGATGCTCTAAGGCTTTGCA 57.205 45.000 19.13 19.13 38.05 4.08
37 38 3.077484 AGATGCTCTAAGGCTTTGCAA 57.923 42.857 20.17 0.00 37.20 4.08
38 39 2.751806 AGATGCTCTAAGGCTTTGCAAC 59.248 45.455 20.17 18.02 37.20 4.17
39 40 1.247567 TGCTCTAAGGCTTTGCAACC 58.752 50.000 4.45 0.00 0.00 3.77
40 41 1.202927 TGCTCTAAGGCTTTGCAACCT 60.203 47.619 4.45 0.00 38.14 3.50
41 42 1.470494 GCTCTAAGGCTTTGCAACCTC 59.530 52.381 4.45 0.00 34.31 3.85
42 43 2.877708 GCTCTAAGGCTTTGCAACCTCT 60.878 50.000 4.45 0.00 34.31 3.69
43 44 3.416156 CTCTAAGGCTTTGCAACCTCTT 58.584 45.455 4.45 9.98 34.31 2.85
44 45 3.149196 TCTAAGGCTTTGCAACCTCTTG 58.851 45.455 4.45 3.64 34.31 3.02
54 55 2.231215 CAACCTCTTGCTAGATCGGG 57.769 55.000 8.04 4.78 0.00 5.14
55 56 1.757118 CAACCTCTTGCTAGATCGGGA 59.243 52.381 8.56 0.00 0.00 5.14
56 57 2.366916 CAACCTCTTGCTAGATCGGGAT 59.633 50.000 8.56 0.00 0.00 3.85
57 58 2.243810 ACCTCTTGCTAGATCGGGATC 58.756 52.381 8.56 0.31 38.09 3.36
58 59 2.242926 CCTCTTGCTAGATCGGGATCA 58.757 52.381 11.00 0.00 40.22 2.92
59 60 2.630098 CCTCTTGCTAGATCGGGATCAA 59.370 50.000 11.00 0.00 40.22 2.57
60 61 3.305950 CCTCTTGCTAGATCGGGATCAAG 60.306 52.174 11.00 6.50 40.22 3.02
61 62 3.300388 TCTTGCTAGATCGGGATCAAGT 58.700 45.455 11.00 0.00 40.22 3.16
62 63 3.068732 TCTTGCTAGATCGGGATCAAGTG 59.931 47.826 11.00 0.17 40.22 3.16
63 64 2.666317 TGCTAGATCGGGATCAAGTGA 58.334 47.619 11.00 0.00 40.22 3.41
64 65 3.031013 TGCTAGATCGGGATCAAGTGAA 58.969 45.455 11.00 0.00 40.22 3.18
65 66 3.181475 TGCTAGATCGGGATCAAGTGAAC 60.181 47.826 11.00 0.00 40.22 3.18
66 67 2.990066 AGATCGGGATCAAGTGAACC 57.010 50.000 11.00 0.00 40.22 3.62
67 68 2.187958 AGATCGGGATCAAGTGAACCA 58.812 47.619 11.00 0.00 38.59 3.67
68 69 2.169352 AGATCGGGATCAAGTGAACCAG 59.831 50.000 11.00 5.79 38.59 4.00
69 70 1.639722 TCGGGATCAAGTGAACCAGA 58.360 50.000 9.53 7.93 38.44 3.86
70 71 1.974957 TCGGGATCAAGTGAACCAGAA 59.025 47.619 7.76 0.00 38.00 3.02
71 72 2.370519 TCGGGATCAAGTGAACCAGAAA 59.629 45.455 7.76 0.00 38.00 2.52
72 73 2.484264 CGGGATCAAGTGAACCAGAAAC 59.516 50.000 9.53 0.00 38.59 2.78
73 74 3.486383 GGGATCAAGTGAACCAGAAACA 58.514 45.455 9.53 0.00 38.59 2.83
74 75 3.253432 GGGATCAAGTGAACCAGAAACAC 59.747 47.826 9.53 0.00 38.59 3.32
75 76 3.882888 GGATCAAGTGAACCAGAAACACA 59.117 43.478 2.90 0.00 37.02 3.72
76 77 4.520492 GGATCAAGTGAACCAGAAACACAT 59.480 41.667 2.90 0.00 37.02 3.21
77 78 5.705441 GGATCAAGTGAACCAGAAACACATA 59.295 40.000 2.90 0.00 37.02 2.29
78 79 6.128172 GGATCAAGTGAACCAGAAACACATAG 60.128 42.308 2.90 0.00 37.02 2.23
79 80 5.063204 TCAAGTGAACCAGAAACACATAGG 58.937 41.667 0.00 0.00 37.05 2.57
80 81 4.021102 AGTGAACCAGAAACACATAGGG 57.979 45.455 0.00 0.00 37.05 3.53
81 82 3.081804 GTGAACCAGAAACACATAGGGG 58.918 50.000 0.00 0.00 35.06 4.79
82 83 2.092323 GAACCAGAAACACATAGGGGC 58.908 52.381 0.00 0.00 0.00 5.80
83 84 1.072266 ACCAGAAACACATAGGGGCA 58.928 50.000 0.00 0.00 0.00 5.36
84 85 1.271926 ACCAGAAACACATAGGGGCAC 60.272 52.381 0.00 0.00 0.00 5.01
85 86 1.271871 CCAGAAACACATAGGGGCACA 60.272 52.381 0.00 0.00 0.00 4.57
86 87 2.086869 CAGAAACACATAGGGGCACAG 58.913 52.381 0.00 0.00 0.00 3.66
87 88 1.985159 AGAAACACATAGGGGCACAGA 59.015 47.619 0.00 0.00 0.00 3.41
88 89 2.375174 AGAAACACATAGGGGCACAGAA 59.625 45.455 0.00 0.00 0.00 3.02
89 90 2.496899 AACACATAGGGGCACAGAAG 57.503 50.000 0.00 0.00 0.00 2.85
90 91 1.656587 ACACATAGGGGCACAGAAGA 58.343 50.000 0.00 0.00 0.00 2.87
91 92 1.985159 ACACATAGGGGCACAGAAGAA 59.015 47.619 0.00 0.00 0.00 2.52
92 93 2.026822 ACACATAGGGGCACAGAAGAAG 60.027 50.000 0.00 0.00 0.00 2.85
93 94 2.237143 CACATAGGGGCACAGAAGAAGA 59.763 50.000 0.00 0.00 0.00 2.87
94 95 2.503356 ACATAGGGGCACAGAAGAAGAG 59.497 50.000 0.00 0.00 0.00 2.85
95 96 2.623418 TAGGGGCACAGAAGAAGAGA 57.377 50.000 0.00 0.00 0.00 3.10
96 97 0.980423 AGGGGCACAGAAGAAGAGAC 59.020 55.000 0.00 0.00 0.00 3.36
97 98 0.687354 GGGGCACAGAAGAAGAGACA 59.313 55.000 0.00 0.00 0.00 3.41
98 99 1.072331 GGGGCACAGAAGAAGAGACAA 59.928 52.381 0.00 0.00 0.00 3.18
99 100 2.487265 GGGGCACAGAAGAAGAGACAAA 60.487 50.000 0.00 0.00 0.00 2.83
100 101 2.810852 GGGCACAGAAGAAGAGACAAAG 59.189 50.000 0.00 0.00 0.00 2.77
101 102 2.225255 GGCACAGAAGAAGAGACAAAGC 59.775 50.000 0.00 0.00 0.00 3.51
102 103 2.874701 GCACAGAAGAAGAGACAAAGCA 59.125 45.455 0.00 0.00 0.00 3.91
103 104 3.313526 GCACAGAAGAAGAGACAAAGCAA 59.686 43.478 0.00 0.00 0.00 3.91
104 105 4.201950 GCACAGAAGAAGAGACAAAGCAAA 60.202 41.667 0.00 0.00 0.00 3.68
105 106 5.677091 GCACAGAAGAAGAGACAAAGCAAAA 60.677 40.000 0.00 0.00 0.00 2.44
106 107 6.324819 CACAGAAGAAGAGACAAAGCAAAAA 58.675 36.000 0.00 0.00 0.00 1.94
107 108 6.252228 CACAGAAGAAGAGACAAAGCAAAAAC 59.748 38.462 0.00 0.00 0.00 2.43
108 109 6.071952 ACAGAAGAAGAGACAAAGCAAAAACA 60.072 34.615 0.00 0.00 0.00 2.83
109 110 6.808212 CAGAAGAAGAGACAAAGCAAAAACAA 59.192 34.615 0.00 0.00 0.00 2.83
110 111 7.490402 CAGAAGAAGAGACAAAGCAAAAACAAT 59.510 33.333 0.00 0.00 0.00 2.71
111 112 8.686334 AGAAGAAGAGACAAAGCAAAAACAATA 58.314 29.630 0.00 0.00 0.00 1.90
112 113 8.634475 AAGAAGAGACAAAGCAAAAACAATAC 57.366 30.769 0.00 0.00 0.00 1.89
113 114 7.771183 AGAAGAGACAAAGCAAAAACAATACA 58.229 30.769 0.00 0.00 0.00 2.29
114 115 7.702348 AGAAGAGACAAAGCAAAAACAATACAC 59.298 33.333 0.00 0.00 0.00 2.90
115 116 6.862209 AGAGACAAAGCAAAAACAATACACA 58.138 32.000 0.00 0.00 0.00 3.72
116 117 7.491682 AGAGACAAAGCAAAAACAATACACAT 58.508 30.769 0.00 0.00 0.00 3.21
117 118 7.649306 AGAGACAAAGCAAAAACAATACACATC 59.351 33.333 0.00 0.00 0.00 3.06
118 119 6.701400 AGACAAAGCAAAAACAATACACATCC 59.299 34.615 0.00 0.00 0.00 3.51
119 120 6.344500 ACAAAGCAAAAACAATACACATCCA 58.656 32.000 0.00 0.00 0.00 3.41
120 121 6.257630 ACAAAGCAAAAACAATACACATCCAC 59.742 34.615 0.00 0.00 0.00 4.02
121 122 5.528043 AGCAAAAACAATACACATCCACA 57.472 34.783 0.00 0.00 0.00 4.17
122 123 5.911752 AGCAAAAACAATACACATCCACAA 58.088 33.333 0.00 0.00 0.00 3.33
123 124 5.752955 AGCAAAAACAATACACATCCACAAC 59.247 36.000 0.00 0.00 0.00 3.32
124 125 5.521735 GCAAAAACAATACACATCCACAACA 59.478 36.000 0.00 0.00 0.00 3.33
125 126 6.509358 GCAAAAACAATACACATCCACAACAC 60.509 38.462 0.00 0.00 0.00 3.32
126 127 5.843673 AAACAATACACATCCACAACACA 57.156 34.783 0.00 0.00 0.00 3.72
127 128 6.403866 AAACAATACACATCCACAACACAT 57.596 33.333 0.00 0.00 0.00 3.21
128 129 7.517614 AAACAATACACATCCACAACACATA 57.482 32.000 0.00 0.00 0.00 2.29
129 130 7.517614 AACAATACACATCCACAACACATAA 57.482 32.000 0.00 0.00 0.00 1.90
130 131 7.517614 ACAATACACATCCACAACACATAAA 57.482 32.000 0.00 0.00 0.00 1.40
131 132 7.592938 ACAATACACATCCACAACACATAAAG 58.407 34.615 0.00 0.00 0.00 1.85
132 133 4.503741 ACACATCCACAACACATAAAGC 57.496 40.909 0.00 0.00 0.00 3.51
133 134 3.888323 ACACATCCACAACACATAAAGCA 59.112 39.130 0.00 0.00 0.00 3.91
134 135 4.022935 ACACATCCACAACACATAAAGCAG 60.023 41.667 0.00 0.00 0.00 4.24
135 136 3.507233 ACATCCACAACACATAAAGCAGG 59.493 43.478 0.00 0.00 0.00 4.85
136 137 2.513753 TCCACAACACATAAAGCAGGG 58.486 47.619 0.00 0.00 0.00 4.45
137 138 2.107378 TCCACAACACATAAAGCAGGGA 59.893 45.455 0.00 0.00 0.00 4.20
138 139 2.489329 CCACAACACATAAAGCAGGGAG 59.511 50.000 0.00 0.00 0.00 4.30
139 140 3.411446 CACAACACATAAAGCAGGGAGA 58.589 45.455 0.00 0.00 0.00 3.71
140 141 3.438087 CACAACACATAAAGCAGGGAGAG 59.562 47.826 0.00 0.00 0.00 3.20
141 142 3.327757 ACAACACATAAAGCAGGGAGAGA 59.672 43.478 0.00 0.00 0.00 3.10
142 143 4.202461 ACAACACATAAAGCAGGGAGAGAA 60.202 41.667 0.00 0.00 0.00 2.87
143 144 3.944087 ACACATAAAGCAGGGAGAGAAC 58.056 45.455 0.00 0.00 0.00 3.01
144 145 3.584848 ACACATAAAGCAGGGAGAGAACT 59.415 43.478 0.00 0.00 0.00 3.01
145 146 4.777896 ACACATAAAGCAGGGAGAGAACTA 59.222 41.667 0.00 0.00 0.00 2.24
146 147 5.105146 ACACATAAAGCAGGGAGAGAACTAG 60.105 44.000 0.00 0.00 0.00 2.57
147 148 4.141824 ACATAAAGCAGGGAGAGAACTAGC 60.142 45.833 0.00 0.00 0.00 3.42
148 149 0.820871 AAGCAGGGAGAGAACTAGCG 59.179 55.000 0.00 0.00 0.00 4.26
149 150 0.323908 AGCAGGGAGAGAACTAGCGT 60.324 55.000 0.00 0.00 0.00 5.07
150 151 0.179124 GCAGGGAGAGAACTAGCGTG 60.179 60.000 0.00 0.00 0.00 5.34
151 152 0.457851 CAGGGAGAGAACTAGCGTGG 59.542 60.000 0.00 0.00 0.00 4.94
152 153 0.684805 AGGGAGAGAACTAGCGTGGG 60.685 60.000 0.00 0.00 0.00 4.61
153 154 0.971447 GGGAGAGAACTAGCGTGGGT 60.971 60.000 0.00 0.00 0.00 4.51
154 155 0.173708 GGAGAGAACTAGCGTGGGTG 59.826 60.000 0.00 0.00 0.00 4.61
155 156 1.174783 GAGAGAACTAGCGTGGGTGA 58.825 55.000 0.00 0.00 0.00 4.02
156 157 1.751924 GAGAGAACTAGCGTGGGTGAT 59.248 52.381 0.00 0.00 0.00 3.06
161 162 3.898123 AGAACTAGCGTGGGTGATGATAT 59.102 43.478 0.00 0.00 0.00 1.63
176 177 7.147949 GGGTGATGATATGATGATTTGGATTCC 60.148 40.741 0.00 0.00 0.00 3.01
185 190 3.133437 TTTGGATTCCAAACCGGCA 57.867 47.368 23.89 4.11 46.92 5.69
186 191 1.638529 TTTGGATTCCAAACCGGCAT 58.361 45.000 23.89 0.00 46.92 4.40
188 193 0.251564 TGGATTCCAAACCGGCATGT 60.252 50.000 0.00 0.00 33.14 3.21
191 196 0.894835 ATTCCAAACCGGCATGTTCC 59.105 50.000 0.00 0.00 33.14 3.62
199 204 2.050144 ACCGGCATGTTCCATAGATCT 58.950 47.619 0.00 0.00 0.00 2.75
203 208 3.496130 CGGCATGTTCCATAGATCTCAAC 59.504 47.826 0.00 0.00 0.00 3.18
206 211 4.740634 GCATGTTCCATAGATCTCAACGGA 60.741 45.833 0.00 0.00 0.00 4.69
208 213 3.181475 TGTTCCATAGATCTCAACGGAGC 60.181 47.826 0.00 4.15 41.13 4.70
210 215 1.336332 CCATAGATCTCAACGGAGCCG 60.336 57.143 7.48 7.48 41.13 5.52
220 225 3.991051 CGGAGCCGTGTGGACTGT 61.991 66.667 0.00 0.00 37.49 3.55
224 229 0.530744 GAGCCGTGTGGACTGTATCA 59.469 55.000 0.00 0.00 37.49 2.15
225 230 1.137086 GAGCCGTGTGGACTGTATCAT 59.863 52.381 0.00 0.00 37.49 2.45
226 231 1.134699 AGCCGTGTGGACTGTATCATG 60.135 52.381 0.00 0.00 37.49 3.07
227 232 1.405526 GCCGTGTGGACTGTATCATGT 60.406 52.381 0.00 0.00 37.49 3.21
228 233 2.270923 CCGTGTGGACTGTATCATGTG 58.729 52.381 0.00 0.00 37.49 3.21
229 234 1.660607 CGTGTGGACTGTATCATGTGC 59.339 52.381 0.00 0.00 0.00 4.57
230 235 2.675032 CGTGTGGACTGTATCATGTGCT 60.675 50.000 0.00 0.00 0.00 4.40
231 236 2.932614 GTGTGGACTGTATCATGTGCTC 59.067 50.000 0.00 0.00 0.00 4.26
232 237 2.196749 GTGGACTGTATCATGTGCTCG 58.803 52.381 0.00 0.00 0.00 5.03
241 246 0.108662 TCATGTGCTCGGTGCTGTAG 60.109 55.000 3.53 0.00 43.37 2.74
242 247 0.108662 CATGTGCTCGGTGCTGTAGA 60.109 55.000 3.53 0.00 43.37 2.59
251 256 3.552875 TCGGTGCTGTAGAGTAGCTTAT 58.447 45.455 5.68 0.00 41.66 1.73
254 259 3.385577 GTGCTGTAGAGTAGCTTATGGC 58.614 50.000 0.00 0.00 41.66 4.40
266 280 3.923017 GCTTATGGCTCTCTCTCTCTC 57.077 52.381 0.00 0.00 38.06 3.20
278 292 6.184580 TCTCTCTCTCTCGTTTGACATTAC 57.815 41.667 0.00 0.00 0.00 1.89
296 310 8.352201 TGACATTACCAAAAGTCAAATCTTGAG 58.648 33.333 0.00 0.00 39.62 3.02
299 313 9.185192 CATTACCAAAAGTCAAATCTTGAGAAC 57.815 33.333 0.00 0.00 41.01 3.01
312 326 5.407407 TCTTGAGAACTAACAGGTGGATC 57.593 43.478 0.00 0.00 0.00 3.36
327 341 1.067354 TGGATCGATCGATGCCAGATG 60.067 52.381 36.48 0.00 41.39 2.90
350 374 6.354130 TGCAAATGGAGGAAGTAGTATAACC 58.646 40.000 0.00 0.00 0.00 2.85
352 376 6.826741 GCAAATGGAGGAAGTAGTATAACCAA 59.173 38.462 0.00 0.00 0.00 3.67
360 384 6.070938 AGGAAGTAGTATAACCAACCTGTCAC 60.071 42.308 0.00 0.00 0.00 3.67
363 387 6.461640 AGTAGTATAACCAACCTGTCACAAC 58.538 40.000 0.00 0.00 0.00 3.32
385 413 3.988379 TCGATGTCGATGATGATGACA 57.012 42.857 0.21 0.00 45.71 3.58
422 453 3.972276 GCAAGTCGGGCGCCAAAA 61.972 61.111 30.85 9.99 0.00 2.44
433 464 1.136891 GGCGCCAAAAAGCATAATCCT 59.863 47.619 24.80 0.00 34.54 3.24
447 478 8.520119 AAGCATAATCCTAGGTTTATTCCCTA 57.480 34.615 18.66 0.00 33.35 3.53
466 497 2.437180 CCGAAGCAGATGCCAGCA 60.437 61.111 0.14 0.00 43.38 4.41
485 516 4.181309 GCAACACTCTGCTTACTCTAGT 57.819 45.455 0.00 0.00 39.34 2.57
486 517 5.312120 GCAACACTCTGCTTACTCTAGTA 57.688 43.478 0.00 0.00 39.34 1.82
548 587 4.142534 CCATCGAATATCCATCCATGTTGC 60.143 45.833 0.00 0.00 0.00 4.17
614 721 2.185350 CTAGCGCTGGTCCAGTGG 59.815 66.667 29.34 18.36 41.66 4.00
640 755 2.159324 TGTCATTTTGCAGCACGTGAAA 60.159 40.909 22.23 10.86 0.00 2.69
641 756 3.052036 GTCATTTTGCAGCACGTGAAAT 58.948 40.909 22.23 12.81 0.00 2.17
860 984 4.139859 TGTGTTTGACTTTCTACCGGAA 57.860 40.909 9.46 0.00 0.00 4.30
892 1020 2.371306 TGCGGCCGAGCACTATATATA 58.629 47.619 33.48 0.00 42.92 0.86
896 1024 3.128068 CGGCCGAGCACTATATATACACA 59.872 47.826 24.07 0.00 0.00 3.72
897 1025 4.673441 GGCCGAGCACTATATATACACAG 58.327 47.826 0.00 0.00 0.00 3.66
906 1034 4.527038 ACTATATATACACAGGCCGCAACT 59.473 41.667 0.00 0.00 0.00 3.16
950 1078 1.021390 CAAGCCACACGGTCCATCTC 61.021 60.000 0.00 0.00 33.28 2.75
954 1082 1.139734 CACACGGTCCATCTCCTCG 59.860 63.158 0.00 0.00 0.00 4.63
960 1088 1.456705 GTCCATCTCCTCGGCCTCT 60.457 63.158 0.00 0.00 0.00 3.69
961 1089 1.045911 GTCCATCTCCTCGGCCTCTT 61.046 60.000 0.00 0.00 0.00 2.85
969 1097 0.461961 CCTCGGCCTCTTCTAACCTG 59.538 60.000 0.00 0.00 0.00 4.00
975 1103 2.223852 GGCCTCTTCTAACCTGATCGAC 60.224 54.545 0.00 0.00 0.00 4.20
1023 1167 3.692406 GCCGACGACTGGGGTCTT 61.692 66.667 0.00 0.00 40.10 3.01
1047 1191 4.057428 GTCGTGAGGAGCTGCGGT 62.057 66.667 0.00 0.00 0.00 5.68
1129 1273 1.227147 GATCCGGCGGAATTCGTGA 60.227 57.895 34.58 7.57 41.72 4.35
1212 1362 3.046087 GAGCACGAGCAGCTGCAA 61.046 61.111 38.24 0.00 43.58 4.08
1236 1386 1.141019 GGCGCCGTTCTCTATCACA 59.859 57.895 12.58 0.00 0.00 3.58
1237 1387 0.249489 GGCGCCGTTCTCTATCACAT 60.249 55.000 12.58 0.00 0.00 3.21
1239 1389 1.399572 CGCCGTTCTCTATCACATCG 58.600 55.000 0.00 0.00 0.00 3.84
1254 1404 2.632544 ATCGTCGTCCGGCTGTGAA 61.633 57.895 0.00 0.00 37.11 3.18
1537 1687 2.453601 TCCCCCTACCCTAGGTAATCAG 59.546 54.545 8.29 0.00 44.73 2.90
1560 1710 7.387948 TCAGCTAACTTCTATTTTCCACTTGAC 59.612 37.037 0.00 0.00 0.00 3.18
1561 1711 7.389053 CAGCTAACTTCTATTTTCCACTTGACT 59.611 37.037 0.00 0.00 0.00 3.41
1562 1712 7.604545 AGCTAACTTCTATTTTCCACTTGACTC 59.395 37.037 0.00 0.00 0.00 3.36
1564 1714 7.497925 AACTTCTATTTTCCACTTGACTCAC 57.502 36.000 0.00 0.00 0.00 3.51
1565 1715 5.696724 ACTTCTATTTTCCACTTGACTCACG 59.303 40.000 0.00 0.00 0.00 4.35
1589 1744 1.935873 CCACGCCATTAGTGACATGAG 59.064 52.381 0.00 0.00 41.83 2.90
1850 2008 4.773117 GACGTCTCGTGGTCCGCC 62.773 72.222 8.70 0.00 41.37 6.13
1957 2118 2.885644 CGAGGACGACGCCATTGG 60.886 66.667 10.28 0.00 42.66 3.16
1987 2148 4.247258 GTCTCGCTGTAGCTAGCTCTATA 58.753 47.826 23.26 0.00 41.51 1.31
1990 2151 5.941058 TCTCGCTGTAGCTAGCTCTATAATT 59.059 40.000 23.26 0.00 41.51 1.40
1991 2152 7.064847 GTCTCGCTGTAGCTAGCTCTATAATTA 59.935 40.741 23.26 0.00 41.51 1.40
1992 2153 7.279090 TCTCGCTGTAGCTAGCTCTATAATTAG 59.721 40.741 23.26 10.56 41.51 1.73
1993 2154 5.968848 CGCTGTAGCTAGCTCTATAATTAGC 59.031 44.000 23.26 17.23 41.51 3.09
1994 2155 6.403746 CGCTGTAGCTAGCTCTATAATTAGCA 60.404 42.308 23.26 0.00 40.66 3.49
1995 2156 7.488322 GCTGTAGCTAGCTCTATAATTAGCAT 58.512 38.462 23.26 0.00 40.66 3.79
1996 2157 7.434897 GCTGTAGCTAGCTCTATAATTAGCATG 59.565 40.741 23.26 0.00 40.66 4.06
1997 2158 7.261325 TGTAGCTAGCTCTATAATTAGCATGC 58.739 38.462 23.26 10.51 40.66 4.06
2037 2200 0.179097 GGTGATGGAACGAGAGCTCC 60.179 60.000 10.93 0.68 46.52 4.70
2067 2239 3.111853 TCGTATGGGAGATGTTCATGC 57.888 47.619 0.00 0.00 0.00 4.06
2116 2293 9.646522 AAAATGGCCATATATAGTCTTTGAAGT 57.353 29.630 21.15 0.00 0.00 3.01
2132 2309 7.220108 GTCTTTGAAGTAAGCAAACGAACAAAT 59.780 33.333 0.00 0.00 32.35 2.32
2204 2383 1.816074 GCCCAAGGACAACGATACAA 58.184 50.000 0.00 0.00 0.00 2.41
2207 2386 3.618019 GCCCAAGGACAACGATACAACTA 60.618 47.826 0.00 0.00 0.00 2.24
2209 2388 4.630069 CCCAAGGACAACGATACAACTAAG 59.370 45.833 0.00 0.00 0.00 2.18
2231 2410 3.565307 AGCATCTCTAGACCTTCCTCAG 58.435 50.000 0.00 0.00 0.00 3.35
2236 2415 5.362105 TCTCTAGACCTTCCTCAGTAGTC 57.638 47.826 0.00 0.00 0.00 2.59
2237 2416 5.034200 TCTCTAGACCTTCCTCAGTAGTCT 58.966 45.833 0.00 0.00 40.70 3.24
2238 2417 5.489637 TCTCTAGACCTTCCTCAGTAGTCTT 59.510 44.000 0.00 0.00 38.65 3.01
2239 2418 6.012333 TCTCTAGACCTTCCTCAGTAGTCTTT 60.012 42.308 0.00 0.00 38.65 2.52
2240 2419 7.182387 TCTCTAGACCTTCCTCAGTAGTCTTTA 59.818 40.741 0.00 0.00 38.65 1.85
2241 2420 7.696981 TCTAGACCTTCCTCAGTAGTCTTTAA 58.303 38.462 0.00 0.00 38.65 1.52
2242 2421 8.337739 TCTAGACCTTCCTCAGTAGTCTTTAAT 58.662 37.037 0.00 0.00 38.65 1.40
2243 2422 7.412853 AGACCTTCCTCAGTAGTCTTTAATC 57.587 40.000 0.00 0.00 34.17 1.75
2244 2423 6.381707 AGACCTTCCTCAGTAGTCTTTAATCC 59.618 42.308 0.00 0.00 34.17 3.01
2245 2424 5.425862 ACCTTCCTCAGTAGTCTTTAATCCC 59.574 44.000 0.00 0.00 0.00 3.85
2246 2425 5.163290 CCTTCCTCAGTAGTCTTTAATCCCC 60.163 48.000 0.00 0.00 0.00 4.81
2247 2426 5.222278 TCCTCAGTAGTCTTTAATCCCCT 57.778 43.478 0.00 0.00 0.00 4.79
2248 2427 6.351317 TCCTCAGTAGTCTTTAATCCCCTA 57.649 41.667 0.00 0.00 0.00 3.53
2249 2428 6.748969 TCCTCAGTAGTCTTTAATCCCCTAA 58.251 40.000 0.00 0.00 0.00 2.69
2250 2429 7.194050 TCCTCAGTAGTCTTTAATCCCCTAAA 58.806 38.462 0.00 0.00 0.00 1.85
2251 2430 7.681168 TCCTCAGTAGTCTTTAATCCCCTAAAA 59.319 37.037 0.00 0.00 0.00 1.52
2252 2431 8.495260 CCTCAGTAGTCTTTAATCCCCTAAAAT 58.505 37.037 0.00 0.00 0.00 1.82
2253 2432 9.907229 CTCAGTAGTCTTTAATCCCCTAAAATT 57.093 33.333 0.00 0.00 0.00 1.82
2256 2435 9.475620 AGTAGTCTTTAATCCCCTAAAATTTGG 57.524 33.333 0.00 0.00 0.00 3.28
2257 2436 9.251440 GTAGTCTTTAATCCCCTAAAATTTGGT 57.749 33.333 0.00 0.00 0.00 3.67
2258 2437 8.134202 AGTCTTTAATCCCCTAAAATTTGGTG 57.866 34.615 0.00 0.00 0.00 4.17
2259 2438 7.180229 AGTCTTTAATCCCCTAAAATTTGGTGG 59.820 37.037 0.00 0.00 0.00 4.61
2260 2439 7.020009 TCTTTAATCCCCTAAAATTTGGTGGT 58.980 34.615 0.00 0.00 0.00 4.16
2261 2440 7.514473 TCTTTAATCCCCTAAAATTTGGTGGTT 59.486 33.333 0.00 0.00 0.00 3.67
2262 2441 7.634526 TTAATCCCCTAAAATTTGGTGGTTT 57.365 32.000 0.00 0.00 0.00 3.27
2263 2442 8.737601 TTAATCCCCTAAAATTTGGTGGTTTA 57.262 30.769 0.00 0.00 0.00 2.01
2264 2443 6.867519 ATCCCCTAAAATTTGGTGGTTTAG 57.132 37.500 0.00 0.00 35.51 1.85
2268 2447 6.673839 CCTAAAATTTGGTGGTTTAGGGAA 57.326 37.500 11.85 0.00 45.36 3.97
2269 2448 7.068686 CCTAAAATTTGGTGGTTTAGGGAAA 57.931 36.000 11.85 0.00 45.36 3.13
2270 2449 7.685481 CCTAAAATTTGGTGGTTTAGGGAAAT 58.315 34.615 11.85 0.00 45.36 2.17
2271 2450 8.817876 CCTAAAATTTGGTGGTTTAGGGAAATA 58.182 33.333 11.85 0.00 45.36 1.40
2274 2453 9.567776 AAAATTTGGTGGTTTAGGGAAATAAAG 57.432 29.630 0.00 0.00 0.00 1.85
2275 2454 8.499288 AATTTGGTGGTTTAGGGAAATAAAGA 57.501 30.769 0.00 0.00 0.00 2.52
2276 2455 7.533289 TTTGGTGGTTTAGGGAAATAAAGAG 57.467 36.000 0.00 0.00 0.00 2.85
2277 2456 5.014202 TGGTGGTTTAGGGAAATAAAGAGC 58.986 41.667 0.00 0.00 0.00 4.09
2278 2457 5.014202 GGTGGTTTAGGGAAATAAAGAGCA 58.986 41.667 0.00 0.00 0.00 4.26
2279 2458 5.656859 GGTGGTTTAGGGAAATAAAGAGCAT 59.343 40.000 0.00 0.00 0.00 3.79
2280 2459 6.183360 GGTGGTTTAGGGAAATAAAGAGCATC 60.183 42.308 0.00 0.00 0.00 3.91
2281 2460 6.377146 GTGGTTTAGGGAAATAAAGAGCATCA 59.623 38.462 0.00 0.00 37.82 3.07
2282 2461 6.377146 TGGTTTAGGGAAATAAAGAGCATCAC 59.623 38.462 0.00 0.00 37.82 3.06
2283 2462 6.603599 GGTTTAGGGAAATAAAGAGCATCACT 59.396 38.462 0.00 0.00 37.82 3.41
2284 2463 7.773690 GGTTTAGGGAAATAAAGAGCATCACTA 59.226 37.037 0.00 0.00 37.82 2.74
2285 2464 9.343539 GTTTAGGGAAATAAAGAGCATCACTAT 57.656 33.333 0.00 0.00 37.82 2.12
2286 2465 9.561069 TTTAGGGAAATAAAGAGCATCACTATC 57.439 33.333 0.00 0.00 37.82 2.08
2287 2466 6.538263 AGGGAAATAAAGAGCATCACTATCC 58.462 40.000 0.00 0.00 37.82 2.59
2288 2467 5.409826 GGGAAATAAAGAGCATCACTATCCG 59.590 44.000 0.00 0.00 37.82 4.18
2289 2468 6.223852 GGAAATAAAGAGCATCACTATCCGA 58.776 40.000 0.00 0.00 37.82 4.55
2290 2469 6.876257 GGAAATAAAGAGCATCACTATCCGAT 59.124 38.462 0.00 0.00 37.82 4.18
2291 2470 7.064016 GGAAATAAAGAGCATCACTATCCGATC 59.936 40.741 0.00 0.00 37.82 3.69
2292 2471 3.951775 AAGAGCATCACTATCCGATCC 57.048 47.619 0.00 0.00 37.82 3.36
2293 2472 2.175202 AGAGCATCACTATCCGATCCC 58.825 52.381 0.00 0.00 37.82 3.85
2294 2473 1.895798 GAGCATCACTATCCGATCCCA 59.104 52.381 0.00 0.00 33.17 4.37
2295 2474 2.300152 GAGCATCACTATCCGATCCCAA 59.700 50.000 0.00 0.00 33.17 4.12
2296 2475 2.037772 AGCATCACTATCCGATCCCAAC 59.962 50.000 0.00 0.00 0.00 3.77
2297 2476 2.224281 GCATCACTATCCGATCCCAACA 60.224 50.000 0.00 0.00 0.00 3.33
2298 2477 3.744214 GCATCACTATCCGATCCCAACAA 60.744 47.826 0.00 0.00 0.00 2.83
2299 2478 4.450976 CATCACTATCCGATCCCAACAAA 58.549 43.478 0.00 0.00 0.00 2.83
2300 2479 4.561500 TCACTATCCGATCCCAACAAAA 57.438 40.909 0.00 0.00 0.00 2.44
2301 2480 4.513442 TCACTATCCGATCCCAACAAAAG 58.487 43.478 0.00 0.00 0.00 2.27
2302 2481 4.019681 TCACTATCCGATCCCAACAAAAGT 60.020 41.667 0.00 0.00 0.00 2.66
2303 2482 4.332819 CACTATCCGATCCCAACAAAAGTC 59.667 45.833 0.00 0.00 0.00 3.01
2304 2483 2.940994 TCCGATCCCAACAAAAGTCA 57.059 45.000 0.00 0.00 0.00 3.41
2305 2484 3.433306 TCCGATCCCAACAAAAGTCAT 57.567 42.857 0.00 0.00 0.00 3.06
2306 2485 4.561500 TCCGATCCCAACAAAAGTCATA 57.438 40.909 0.00 0.00 0.00 2.15
2307 2486 5.110814 TCCGATCCCAACAAAAGTCATAT 57.889 39.130 0.00 0.00 0.00 1.78
2308 2487 5.505780 TCCGATCCCAACAAAAGTCATATT 58.494 37.500 0.00 0.00 0.00 1.28
2309 2488 5.588648 TCCGATCCCAACAAAAGTCATATTC 59.411 40.000 0.00 0.00 0.00 1.75
2310 2489 5.501715 CGATCCCAACAAAAGTCATATTCG 58.498 41.667 0.00 0.00 0.00 3.34
2311 2490 5.293324 CGATCCCAACAAAAGTCATATTCGA 59.707 40.000 0.00 0.00 0.00 3.71
2312 2491 6.510157 CGATCCCAACAAAAGTCATATTCGAG 60.510 42.308 0.00 0.00 0.00 4.04
2313 2492 4.941263 TCCCAACAAAAGTCATATTCGAGG 59.059 41.667 0.00 0.00 0.00 4.63
2314 2493 4.941263 CCCAACAAAAGTCATATTCGAGGA 59.059 41.667 0.00 0.00 0.00 3.71
2315 2494 5.414454 CCCAACAAAAGTCATATTCGAGGAA 59.586 40.000 0.00 0.00 0.00 3.36
2316 2495 6.072175 CCCAACAAAAGTCATATTCGAGGAAA 60.072 38.462 0.00 0.00 0.00 3.13
2317 2496 7.367285 CCAACAAAAGTCATATTCGAGGAAAA 58.633 34.615 0.00 0.00 0.00 2.29
2318 2497 7.326063 CCAACAAAAGTCATATTCGAGGAAAAC 59.674 37.037 0.00 0.00 0.00 2.43
2319 2498 6.909909 ACAAAAGTCATATTCGAGGAAAACC 58.090 36.000 0.00 0.00 0.00 3.27
2320 2499 6.715264 ACAAAAGTCATATTCGAGGAAAACCT 59.285 34.615 0.00 0.00 0.00 3.50
2321 2500 7.230712 ACAAAAGTCATATTCGAGGAAAACCTT 59.769 33.333 0.00 0.00 0.00 3.50
2322 2501 7.761038 AAAGTCATATTCGAGGAAAACCTTT 57.239 32.000 0.00 0.00 0.00 3.11
2323 2502 7.761038 AAGTCATATTCGAGGAAAACCTTTT 57.239 32.000 0.00 0.00 0.00 2.27
2324 2503 7.761038 AGTCATATTCGAGGAAAACCTTTTT 57.239 32.000 0.00 0.00 0.00 1.94
2325 2504 7.593825 AGTCATATTCGAGGAAAACCTTTTTG 58.406 34.615 0.00 0.00 0.00 2.44
2326 2505 7.230712 AGTCATATTCGAGGAAAACCTTTTTGT 59.769 33.333 0.00 0.00 0.00 2.83
2327 2506 7.865889 GTCATATTCGAGGAAAACCTTTTTGTT 59.134 33.333 0.00 0.00 0.00 2.83
2328 2507 8.417884 TCATATTCGAGGAAAACCTTTTTGTTT 58.582 29.630 0.00 0.00 40.05 2.83
2330 2509 6.713792 TTCGAGGAAAACCTTTTTGTTTTG 57.286 33.333 6.62 0.00 45.72 2.44
2331 2510 6.026947 TCGAGGAAAACCTTTTTGTTTTGA 57.973 33.333 6.62 0.00 45.72 2.69
2332 2511 6.096695 TCGAGGAAAACCTTTTTGTTTTGAG 58.903 36.000 6.62 0.00 45.72 3.02
2333 2512 5.290885 CGAGGAAAACCTTTTTGTTTTGAGG 59.709 40.000 6.62 0.00 45.72 3.86
2384 2565 5.335661 GCAACGGGAGAAACAAATCTTACAT 60.336 40.000 0.00 0.00 0.00 2.29
2447 2628 6.698329 TGACTGAAATTTGTTTGCAGATCAAG 59.302 34.615 9.99 0.00 35.84 3.02
2448 2629 6.808829 ACTGAAATTTGTTTGCAGATCAAGA 58.191 32.000 9.99 0.00 35.84 3.02
2524 2706 7.749539 TGTAATGTAGTGTAATCATGTGTCG 57.250 36.000 0.00 0.00 0.00 4.35
2567 2749 2.041620 AGAAATAGCAAGCAGGGACCAA 59.958 45.455 0.00 0.00 0.00 3.67
2623 2805 6.407475 TCATCATGACTTCATTTGTACACG 57.593 37.500 0.00 0.00 33.61 4.49
2722 2944 9.416284 TGGTTACTCATCACAGTACATTATAGA 57.584 33.333 0.00 0.00 0.00 1.98
2763 2989 1.202592 TCCAGAGTGTACGCAAGCAAA 60.203 47.619 9.48 0.00 45.62 3.68
2791 3018 4.142038 GTTTGTAACCCACAGAAGACCAT 58.858 43.478 0.00 0.00 38.72 3.55
2871 3100 6.957635 CACATATTGTCAGAATGTCGTTCAAG 59.042 38.462 7.53 0.00 39.39 3.02
2886 3115 3.932710 CGTTCAAGGAAATAGCTAGCACA 59.067 43.478 18.83 4.27 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.334160 TCTACAGCCGGACTTGACAA 58.666 50.000 5.05 0.00 0.00 3.18
1 2 1.204704 CATCTACAGCCGGACTTGACA 59.795 52.381 5.05 0.00 0.00 3.58
2 3 1.927895 CATCTACAGCCGGACTTGAC 58.072 55.000 5.05 0.00 0.00 3.18
3 4 0.175760 GCATCTACAGCCGGACTTGA 59.824 55.000 5.05 0.00 0.00 3.02
4 5 0.176680 AGCATCTACAGCCGGACTTG 59.823 55.000 5.05 1.91 0.00 3.16
5 6 0.461961 GAGCATCTACAGCCGGACTT 59.538 55.000 5.05 0.00 0.00 3.01
6 7 2.119886 GAGCATCTACAGCCGGACT 58.880 57.895 5.05 0.00 0.00 3.85
7 8 4.740235 GAGCATCTACAGCCGGAC 57.260 61.111 5.05 0.00 0.00 4.79
15 16 7.158654 GGTTGCAAAGCCTTAGAGCATCTAC 62.159 48.000 0.00 0.00 42.71 2.59
16 17 5.163363 GGTTGCAAAGCCTTAGAGCATCTA 61.163 45.833 0.00 0.00 41.01 1.98
17 18 4.432480 GGTTGCAAAGCCTTAGAGCATCT 61.432 47.826 0.00 0.00 44.08 2.90
18 19 2.159324 GGTTGCAAAGCCTTAGAGCATC 60.159 50.000 0.00 1.06 38.67 3.91
19 20 1.821136 GGTTGCAAAGCCTTAGAGCAT 59.179 47.619 0.00 0.00 38.67 3.79
20 21 1.247567 GGTTGCAAAGCCTTAGAGCA 58.752 50.000 0.00 0.00 38.67 4.26
35 36 1.757118 TCCCGATCTAGCAAGAGGTTG 59.243 52.381 0.00 0.00 34.49 3.77
36 37 2.160721 TCCCGATCTAGCAAGAGGTT 57.839 50.000 0.00 0.00 34.49 3.50
37 38 2.243810 GATCCCGATCTAGCAAGAGGT 58.756 52.381 0.00 0.00 34.49 3.85
38 39 2.242926 TGATCCCGATCTAGCAAGAGG 58.757 52.381 6.28 0.00 38.60 3.69
39 40 3.320541 ACTTGATCCCGATCTAGCAAGAG 59.679 47.826 18.51 2.13 41.99 2.85
40 41 3.068732 CACTTGATCCCGATCTAGCAAGA 59.931 47.826 18.51 0.00 41.99 3.02
41 42 3.068732 TCACTTGATCCCGATCTAGCAAG 59.931 47.826 13.77 12.99 41.99 4.01
42 43 3.031013 TCACTTGATCCCGATCTAGCAA 58.969 45.455 13.77 2.78 41.99 3.91
43 44 2.666317 TCACTTGATCCCGATCTAGCA 58.334 47.619 13.77 1.68 41.99 3.49
44 45 3.385577 GTTCACTTGATCCCGATCTAGC 58.614 50.000 13.77 0.00 41.99 3.42
45 46 3.384789 TGGTTCACTTGATCCCGATCTAG 59.615 47.826 12.67 12.67 43.23 2.43
46 47 3.371034 TGGTTCACTTGATCCCGATCTA 58.629 45.455 6.28 0.00 38.60 1.98
47 48 2.169352 CTGGTTCACTTGATCCCGATCT 59.831 50.000 6.28 0.00 38.60 2.75
48 49 2.168521 TCTGGTTCACTTGATCCCGATC 59.831 50.000 4.25 0.00 38.29 3.69
49 50 2.187958 TCTGGTTCACTTGATCCCGAT 58.812 47.619 4.25 0.00 33.91 4.18
50 51 1.639722 TCTGGTTCACTTGATCCCGA 58.360 50.000 4.25 1.12 33.91 5.14
51 52 2.472695 TTCTGGTTCACTTGATCCCG 57.527 50.000 4.25 0.00 33.91 5.14
52 53 3.253432 GTGTTTCTGGTTCACTTGATCCC 59.747 47.826 4.25 0.00 33.91 3.85
53 54 3.882888 TGTGTTTCTGGTTCACTTGATCC 59.117 43.478 0.01 0.01 35.10 3.36
54 55 5.695851 ATGTGTTTCTGGTTCACTTGATC 57.304 39.130 0.00 0.00 33.82 2.92
55 56 5.707298 CCTATGTGTTTCTGGTTCACTTGAT 59.293 40.000 0.00 0.00 33.82 2.57
56 57 5.063204 CCTATGTGTTTCTGGTTCACTTGA 58.937 41.667 0.00 0.00 33.82 3.02
57 58 4.216257 CCCTATGTGTTTCTGGTTCACTTG 59.784 45.833 0.00 0.00 33.82 3.16
58 59 4.398319 CCCTATGTGTTTCTGGTTCACTT 58.602 43.478 0.00 0.00 33.82 3.16
59 60 3.244911 CCCCTATGTGTTTCTGGTTCACT 60.245 47.826 0.00 0.00 33.82 3.41
60 61 3.081804 CCCCTATGTGTTTCTGGTTCAC 58.918 50.000 0.00 0.00 0.00 3.18
61 62 2.554344 GCCCCTATGTGTTTCTGGTTCA 60.554 50.000 0.00 0.00 0.00 3.18
62 63 2.092323 GCCCCTATGTGTTTCTGGTTC 58.908 52.381 0.00 0.00 0.00 3.62
63 64 1.427368 TGCCCCTATGTGTTTCTGGTT 59.573 47.619 0.00 0.00 0.00 3.67
64 65 1.072266 TGCCCCTATGTGTTTCTGGT 58.928 50.000 0.00 0.00 0.00 4.00
65 66 1.271871 TGTGCCCCTATGTGTTTCTGG 60.272 52.381 0.00 0.00 0.00 3.86
66 67 2.086869 CTGTGCCCCTATGTGTTTCTG 58.913 52.381 0.00 0.00 0.00 3.02
67 68 1.985159 TCTGTGCCCCTATGTGTTTCT 59.015 47.619 0.00 0.00 0.00 2.52
68 69 2.489938 TCTGTGCCCCTATGTGTTTC 57.510 50.000 0.00 0.00 0.00 2.78
69 70 2.375174 TCTTCTGTGCCCCTATGTGTTT 59.625 45.455 0.00 0.00 0.00 2.83
70 71 1.985159 TCTTCTGTGCCCCTATGTGTT 59.015 47.619 0.00 0.00 0.00 3.32
71 72 1.656587 TCTTCTGTGCCCCTATGTGT 58.343 50.000 0.00 0.00 0.00 3.72
72 73 2.237143 TCTTCTTCTGTGCCCCTATGTG 59.763 50.000 0.00 0.00 0.00 3.21
73 74 2.503356 CTCTTCTTCTGTGCCCCTATGT 59.497 50.000 0.00 0.00 0.00 2.29
74 75 2.768527 TCTCTTCTTCTGTGCCCCTATG 59.231 50.000 0.00 0.00 0.00 2.23
75 76 2.769095 GTCTCTTCTTCTGTGCCCCTAT 59.231 50.000 0.00 0.00 0.00 2.57
76 77 2.180276 GTCTCTTCTTCTGTGCCCCTA 58.820 52.381 0.00 0.00 0.00 3.53
77 78 0.980423 GTCTCTTCTTCTGTGCCCCT 59.020 55.000 0.00 0.00 0.00 4.79
78 79 0.687354 TGTCTCTTCTTCTGTGCCCC 59.313 55.000 0.00 0.00 0.00 5.80
79 80 2.550830 TTGTCTCTTCTTCTGTGCCC 57.449 50.000 0.00 0.00 0.00 5.36
80 81 2.225255 GCTTTGTCTCTTCTTCTGTGCC 59.775 50.000 0.00 0.00 0.00 5.01
81 82 2.874701 TGCTTTGTCTCTTCTTCTGTGC 59.125 45.455 0.00 0.00 0.00 4.57
82 83 5.490139 TTTGCTTTGTCTCTTCTTCTGTG 57.510 39.130 0.00 0.00 0.00 3.66
83 84 6.071952 TGTTTTTGCTTTGTCTCTTCTTCTGT 60.072 34.615 0.00 0.00 0.00 3.41
84 85 6.324819 TGTTTTTGCTTTGTCTCTTCTTCTG 58.675 36.000 0.00 0.00 0.00 3.02
85 86 6.515272 TGTTTTTGCTTTGTCTCTTCTTCT 57.485 33.333 0.00 0.00 0.00 2.85
86 87 7.761651 ATTGTTTTTGCTTTGTCTCTTCTTC 57.238 32.000 0.00 0.00 0.00 2.87
87 88 8.250332 TGTATTGTTTTTGCTTTGTCTCTTCTT 58.750 29.630 0.00 0.00 0.00 2.52
88 89 7.702348 GTGTATTGTTTTTGCTTTGTCTCTTCT 59.298 33.333 0.00 0.00 0.00 2.85
89 90 7.487829 TGTGTATTGTTTTTGCTTTGTCTCTTC 59.512 33.333 0.00 0.00 0.00 2.87
90 91 7.319646 TGTGTATTGTTTTTGCTTTGTCTCTT 58.680 30.769 0.00 0.00 0.00 2.85
91 92 6.862209 TGTGTATTGTTTTTGCTTTGTCTCT 58.138 32.000 0.00 0.00 0.00 3.10
92 93 7.096065 GGATGTGTATTGTTTTTGCTTTGTCTC 60.096 37.037 0.00 0.00 0.00 3.36
93 94 6.701400 GGATGTGTATTGTTTTTGCTTTGTCT 59.299 34.615 0.00 0.00 0.00 3.41
94 95 6.478344 TGGATGTGTATTGTTTTTGCTTTGTC 59.522 34.615 0.00 0.00 0.00 3.18
95 96 6.257630 GTGGATGTGTATTGTTTTTGCTTTGT 59.742 34.615 0.00 0.00 0.00 2.83
96 97 6.257411 TGTGGATGTGTATTGTTTTTGCTTTG 59.743 34.615 0.00 0.00 0.00 2.77
97 98 6.344500 TGTGGATGTGTATTGTTTTTGCTTT 58.656 32.000 0.00 0.00 0.00 3.51
98 99 5.911752 TGTGGATGTGTATTGTTTTTGCTT 58.088 33.333 0.00 0.00 0.00 3.91
99 100 5.528043 TGTGGATGTGTATTGTTTTTGCT 57.472 34.783 0.00 0.00 0.00 3.91
100 101 5.521735 TGTTGTGGATGTGTATTGTTTTTGC 59.478 36.000 0.00 0.00 0.00 3.68
101 102 6.533012 TGTGTTGTGGATGTGTATTGTTTTTG 59.467 34.615 0.00 0.00 0.00 2.44
102 103 6.634805 TGTGTTGTGGATGTGTATTGTTTTT 58.365 32.000 0.00 0.00 0.00 1.94
103 104 6.214191 TGTGTTGTGGATGTGTATTGTTTT 57.786 33.333 0.00 0.00 0.00 2.43
104 105 5.843673 TGTGTTGTGGATGTGTATTGTTT 57.156 34.783 0.00 0.00 0.00 2.83
105 106 7.517614 TTATGTGTTGTGGATGTGTATTGTT 57.482 32.000 0.00 0.00 0.00 2.83
106 107 7.517614 TTTATGTGTTGTGGATGTGTATTGT 57.482 32.000 0.00 0.00 0.00 2.71
107 108 6.527722 GCTTTATGTGTTGTGGATGTGTATTG 59.472 38.462 0.00 0.00 0.00 1.90
108 109 6.208402 TGCTTTATGTGTTGTGGATGTGTATT 59.792 34.615 0.00 0.00 0.00 1.89
109 110 5.709631 TGCTTTATGTGTTGTGGATGTGTAT 59.290 36.000 0.00 0.00 0.00 2.29
110 111 5.066593 TGCTTTATGTGTTGTGGATGTGTA 58.933 37.500 0.00 0.00 0.00 2.90
111 112 3.888323 TGCTTTATGTGTTGTGGATGTGT 59.112 39.130 0.00 0.00 0.00 3.72
112 113 4.478699 CTGCTTTATGTGTTGTGGATGTG 58.521 43.478 0.00 0.00 0.00 3.21
113 114 3.507233 CCTGCTTTATGTGTTGTGGATGT 59.493 43.478 0.00 0.00 0.00 3.06
114 115 3.119388 CCCTGCTTTATGTGTTGTGGATG 60.119 47.826 0.00 0.00 0.00 3.51
115 116 3.091545 CCCTGCTTTATGTGTTGTGGAT 58.908 45.455 0.00 0.00 0.00 3.41
116 117 2.107378 TCCCTGCTTTATGTGTTGTGGA 59.893 45.455 0.00 0.00 0.00 4.02
117 118 2.489329 CTCCCTGCTTTATGTGTTGTGG 59.511 50.000 0.00 0.00 0.00 4.17
118 119 3.411446 TCTCCCTGCTTTATGTGTTGTG 58.589 45.455 0.00 0.00 0.00 3.33
119 120 3.327757 TCTCTCCCTGCTTTATGTGTTGT 59.672 43.478 0.00 0.00 0.00 3.32
120 121 3.942829 TCTCTCCCTGCTTTATGTGTTG 58.057 45.455 0.00 0.00 0.00 3.33
121 122 4.042187 AGTTCTCTCCCTGCTTTATGTGTT 59.958 41.667 0.00 0.00 0.00 3.32
122 123 3.584848 AGTTCTCTCCCTGCTTTATGTGT 59.415 43.478 0.00 0.00 0.00 3.72
123 124 4.213564 AGTTCTCTCCCTGCTTTATGTG 57.786 45.455 0.00 0.00 0.00 3.21
124 125 4.141824 GCTAGTTCTCTCCCTGCTTTATGT 60.142 45.833 0.00 0.00 0.00 2.29
125 126 4.376146 GCTAGTTCTCTCCCTGCTTTATG 58.624 47.826 0.00 0.00 0.00 1.90
126 127 3.068873 CGCTAGTTCTCTCCCTGCTTTAT 59.931 47.826 0.00 0.00 0.00 1.40
127 128 2.427453 CGCTAGTTCTCTCCCTGCTTTA 59.573 50.000 0.00 0.00 0.00 1.85
128 129 1.205893 CGCTAGTTCTCTCCCTGCTTT 59.794 52.381 0.00 0.00 0.00 3.51
129 130 0.820871 CGCTAGTTCTCTCCCTGCTT 59.179 55.000 0.00 0.00 0.00 3.91
130 131 0.323908 ACGCTAGTTCTCTCCCTGCT 60.324 55.000 0.00 0.00 0.00 4.24
131 132 0.179124 CACGCTAGTTCTCTCCCTGC 60.179 60.000 0.00 0.00 0.00 4.85
132 133 0.457851 CCACGCTAGTTCTCTCCCTG 59.542 60.000 0.00 0.00 0.00 4.45
133 134 0.684805 CCCACGCTAGTTCTCTCCCT 60.685 60.000 0.00 0.00 0.00 4.20
134 135 0.971447 ACCCACGCTAGTTCTCTCCC 60.971 60.000 0.00 0.00 0.00 4.30
135 136 0.173708 CACCCACGCTAGTTCTCTCC 59.826 60.000 0.00 0.00 0.00 3.71
136 137 1.174783 TCACCCACGCTAGTTCTCTC 58.825 55.000 0.00 0.00 0.00 3.20
137 138 1.478510 CATCACCCACGCTAGTTCTCT 59.521 52.381 0.00 0.00 0.00 3.10
138 139 1.476891 TCATCACCCACGCTAGTTCTC 59.523 52.381 0.00 0.00 0.00 2.87
139 140 1.557099 TCATCACCCACGCTAGTTCT 58.443 50.000 0.00 0.00 0.00 3.01
140 141 2.604046 ATCATCACCCACGCTAGTTC 57.396 50.000 0.00 0.00 0.00 3.01
141 142 3.641436 TCATATCATCACCCACGCTAGTT 59.359 43.478 0.00 0.00 0.00 2.24
142 143 3.230976 TCATATCATCACCCACGCTAGT 58.769 45.455 0.00 0.00 0.00 2.57
143 144 3.942130 TCATATCATCACCCACGCTAG 57.058 47.619 0.00 0.00 0.00 3.42
144 145 3.831911 TCATCATATCATCACCCACGCTA 59.168 43.478 0.00 0.00 0.00 4.26
145 146 2.634453 TCATCATATCATCACCCACGCT 59.366 45.455 0.00 0.00 0.00 5.07
146 147 3.044235 TCATCATATCATCACCCACGC 57.956 47.619 0.00 0.00 0.00 5.34
147 148 5.106436 CCAAATCATCATATCATCACCCACG 60.106 44.000 0.00 0.00 0.00 4.94
148 149 6.005823 TCCAAATCATCATATCATCACCCAC 58.994 40.000 0.00 0.00 0.00 4.61
149 150 6.203526 TCCAAATCATCATATCATCACCCA 57.796 37.500 0.00 0.00 0.00 4.51
150 151 7.147949 GGAATCCAAATCATCATATCATCACCC 60.148 40.741 0.00 0.00 0.00 4.61
151 152 7.395206 TGGAATCCAAATCATCATATCATCACC 59.605 37.037 0.00 0.00 0.00 4.02
152 153 8.344446 TGGAATCCAAATCATCATATCATCAC 57.656 34.615 0.00 0.00 0.00 3.06
153 154 8.943594 TTGGAATCCAAATCATCATATCATCA 57.056 30.769 13.04 0.00 40.92 3.07
185 190 4.502259 GCTCCGTTGAGATCTATGGAACAT 60.502 45.833 7.67 0.00 42.19 2.71
186 191 3.181475 GCTCCGTTGAGATCTATGGAACA 60.181 47.826 7.67 0.00 42.21 3.18
188 193 2.365617 GGCTCCGTTGAGATCTATGGAA 59.634 50.000 7.67 0.00 41.42 3.53
191 196 2.057503 CGGCTCCGTTGAGATCTATG 57.942 55.000 0.00 0.00 41.42 2.23
203 208 1.945354 ATACAGTCCACACGGCTCCG 61.945 60.000 6.79 6.79 46.03 4.63
206 211 1.134699 CATGATACAGTCCACACGGCT 60.135 52.381 0.00 0.00 0.00 5.52
208 213 2.270923 CACATGATACAGTCCACACGG 58.729 52.381 0.00 0.00 0.00 4.94
210 215 2.932614 GAGCACATGATACAGTCCACAC 59.067 50.000 0.00 0.00 0.00 3.82
212 217 2.196749 CGAGCACATGATACAGTCCAC 58.803 52.381 0.00 0.00 0.00 4.02
218 223 3.064079 GCACCGAGCACATGATACA 57.936 52.632 0.00 0.00 44.79 2.29
228 233 0.248702 GCTACTCTACAGCACCGAGC 60.249 60.000 0.00 0.00 46.19 5.03
229 234 1.384525 AGCTACTCTACAGCACCGAG 58.615 55.000 0.00 0.00 41.66 4.63
230 235 1.835494 AAGCTACTCTACAGCACCGA 58.165 50.000 0.00 0.00 41.66 4.69
231 236 3.551046 CCATAAGCTACTCTACAGCACCG 60.551 52.174 0.00 0.00 41.66 4.94
232 237 3.800604 GCCATAAGCTACTCTACAGCACC 60.801 52.174 0.00 0.00 41.66 5.01
251 256 1.815613 CAAACGAGAGAGAGAGAGCCA 59.184 52.381 0.00 0.00 0.00 4.75
254 259 4.963276 ATGTCAAACGAGAGAGAGAGAG 57.037 45.455 0.00 0.00 0.00 3.20
263 277 5.818336 TGACTTTTGGTAATGTCAAACGAGA 59.182 36.000 0.00 0.00 42.23 4.04
264 278 6.055231 TGACTTTTGGTAATGTCAAACGAG 57.945 37.500 0.00 0.00 42.23 4.18
278 292 8.405531 TGTTAGTTCTCAAGATTTGACTTTTGG 58.594 33.333 0.00 0.00 35.46 3.28
296 310 3.066342 TCGATCGATCCACCTGTTAGTTC 59.934 47.826 19.51 0.00 0.00 3.01
299 313 3.569548 CATCGATCGATCCACCTGTTAG 58.430 50.000 27.20 8.82 31.62 2.34
327 341 6.354130 TGGTTATACTACTTCCTCCATTTGC 58.646 40.000 0.00 0.00 0.00 3.68
329 343 7.184022 AGGTTGGTTATACTACTTCCTCCATTT 59.816 37.037 0.00 0.00 0.00 2.32
334 348 6.154021 TGACAGGTTGGTTATACTACTTCCTC 59.846 42.308 0.00 0.00 0.00 3.71
336 350 6.104665 GTGACAGGTTGGTTATACTACTTCC 58.895 44.000 0.00 0.00 0.00 3.46
350 374 2.807967 ACATCGATGTTGTGACAGGTTG 59.192 45.455 25.18 0.00 39.58 3.77
352 376 2.688507 GACATCGATGTTGTGACAGGT 58.311 47.619 30.46 4.99 41.95 4.00
418 449 9.750125 GGAATAAACCTAGGATTATGCTTTTTG 57.250 33.333 22.75 0.00 0.00 2.44
422 453 7.408013 AGGGAATAAACCTAGGATTATGCTT 57.592 36.000 22.75 11.29 36.32 3.91
433 464 3.389002 GCTTCGGGTAGGGAATAAACCTA 59.611 47.826 0.00 0.00 39.54 3.08
447 478 2.270205 CTGGCATCTGCTTCGGGT 59.730 61.111 1.70 0.00 41.70 5.28
483 514 8.652290 GGTCATGTAGAGGGAGAAAAATATACT 58.348 37.037 0.00 0.00 0.00 2.12
484 515 8.652290 AGGTCATGTAGAGGGAGAAAAATATAC 58.348 37.037 0.00 0.00 0.00 1.47
485 516 8.798975 AGGTCATGTAGAGGGAGAAAAATATA 57.201 34.615 0.00 0.00 0.00 0.86
486 517 7.348274 TGAGGTCATGTAGAGGGAGAAAAATAT 59.652 37.037 0.00 0.00 0.00 1.28
502 533 5.426504 GAAACATCTGAGATGAGGTCATGT 58.573 41.667 27.73 2.21 36.57 3.21
548 587 7.144722 TGACTTTACTAATGTCAAAGGCATG 57.855 36.000 12.79 0.00 41.27 4.06
614 721 0.032403 TGCTGCAAAATGACACCTGC 59.968 50.000 0.00 0.00 35.32 4.85
656 771 2.293677 TTGACCGACCTGATCAATCG 57.706 50.000 17.95 17.95 35.62 3.34
688 803 1.004610 CGCATCAGGATTTACACGCAG 60.005 52.381 0.00 0.00 0.00 5.18
690 805 1.286501 TCGCATCAGGATTTACACGC 58.713 50.000 0.00 0.00 0.00 5.34
892 1020 3.196207 ATGGAGTTGCGGCCTGTGT 62.196 57.895 0.00 0.00 0.00 3.72
896 1024 2.424842 TTTGGATGGAGTTGCGGCCT 62.425 55.000 0.00 0.00 0.00 5.19
897 1025 1.531739 TTTTGGATGGAGTTGCGGCC 61.532 55.000 0.00 0.00 0.00 6.13
906 1034 3.117701 TCTGTGGTTGACTTTTGGATGGA 60.118 43.478 0.00 0.00 0.00 3.41
930 1058 1.003839 GATGGACCGTGTGGCTTGA 60.004 57.895 0.00 0.00 39.70 3.02
950 1078 0.461961 CAGGTTAGAAGAGGCCGAGG 59.538 60.000 0.00 0.00 0.00 4.63
954 1082 2.032620 TCGATCAGGTTAGAAGAGGCC 58.967 52.381 0.00 0.00 0.00 5.19
960 1088 3.095912 TGGAGGTCGATCAGGTTAGAA 57.904 47.619 0.00 0.00 0.00 2.10
961 1089 2.820728 TGGAGGTCGATCAGGTTAGA 57.179 50.000 0.00 0.00 0.00 2.10
1165 1315 0.800631 TACTCCAGCACGTCGTACAG 59.199 55.000 0.00 0.00 0.00 2.74
1239 1389 3.103911 CGTTCACAGCCGGACGAC 61.104 66.667 5.05 0.00 37.69 4.34
1273 1423 0.820871 AAGGAGATGAGCACCTCGTC 59.179 55.000 6.38 6.38 44.30 4.20
1537 1687 7.387948 TGAGTCAAGTGGAAAATAGAAGTTAGC 59.612 37.037 0.00 0.00 0.00 3.09
1560 1710 0.389296 TAATGGCGTGGTGTCGTGAG 60.389 55.000 0.00 0.00 0.00 3.51
1561 1711 0.389296 CTAATGGCGTGGTGTCGTGA 60.389 55.000 0.00 0.00 0.00 4.35
1562 1712 0.669318 ACTAATGGCGTGGTGTCGTG 60.669 55.000 0.00 0.00 0.00 4.35
1564 1714 0.389296 TCACTAATGGCGTGGTGTCG 60.389 55.000 11.17 0.00 33.31 4.35
1565 1715 1.076332 GTCACTAATGGCGTGGTGTC 58.924 55.000 11.17 4.53 33.31 3.67
1808 1966 4.668118 TCGTCCCCGCGGTTCAAC 62.668 66.667 26.12 14.70 0.00 3.18
1953 2114 4.143333 CGAGACCCGTCGCCCAAT 62.143 66.667 0.00 0.00 32.22 3.16
1987 2148 5.008019 CCAATTCTCGTACTGCATGCTAATT 59.992 40.000 20.33 8.63 0.00 1.40
1990 2151 3.118775 ACCAATTCTCGTACTGCATGCTA 60.119 43.478 20.33 0.10 0.00 3.49
1991 2152 2.283298 CCAATTCTCGTACTGCATGCT 58.717 47.619 20.33 1.26 0.00 3.79
1992 2153 2.009774 ACCAATTCTCGTACTGCATGC 58.990 47.619 11.82 11.82 0.00 4.06
1993 2154 3.063997 GGAACCAATTCTCGTACTGCATG 59.936 47.826 0.00 0.00 34.98 4.06
1994 2155 3.270877 GGAACCAATTCTCGTACTGCAT 58.729 45.455 0.00 0.00 34.98 3.96
1995 2156 2.037902 TGGAACCAATTCTCGTACTGCA 59.962 45.455 0.00 0.00 34.98 4.41
1996 2157 2.415512 GTGGAACCAATTCTCGTACTGC 59.584 50.000 0.00 0.00 34.98 4.40
1997 2158 2.666508 CGTGGAACCAATTCTCGTACTG 59.333 50.000 0.00 0.00 34.98 2.74
2050 2213 3.205338 CAACGCATGAACATCTCCCATA 58.795 45.455 0.00 0.00 0.00 2.74
2067 2239 3.223661 AGAGCCTCTCTTTGCAACG 57.776 52.632 0.00 0.00 37.60 4.10
2116 2293 8.952278 AGGATGTATTATTTGTTCGTTTGCTTA 58.048 29.630 0.00 0.00 0.00 3.09
2136 2313 8.517878 CACTGTAATGAAAGAATTTGAGGATGT 58.482 33.333 0.00 0.00 39.27 3.06
2160 2337 1.796459 ACGCGAAGTCATAAACCACAC 59.204 47.619 15.93 0.00 0.00 3.82
2194 2371 6.269315 AGAGATGCTCTTAGTTGTATCGTTG 58.731 40.000 0.00 0.00 37.60 4.10
2204 2383 5.103686 AGGAAGGTCTAGAGATGCTCTTAGT 60.104 44.000 1.88 0.00 41.50 2.24
2207 2386 4.215109 GAGGAAGGTCTAGAGATGCTCTT 58.785 47.826 1.88 2.46 41.50 2.85
2209 2388 3.561143 TGAGGAAGGTCTAGAGATGCTC 58.439 50.000 11.63 11.63 0.00 4.26
2231 2410 9.251440 ACCAAATTTTAGGGGATTAAAGACTAC 57.749 33.333 0.00 0.00 0.00 2.73
2236 2415 7.252612 ACCACCAAATTTTAGGGGATTAAAG 57.747 36.000 12.32 0.00 0.00 1.85
2237 2416 7.634526 AACCACCAAATTTTAGGGGATTAAA 57.365 32.000 12.32 0.00 0.00 1.52
2238 2417 7.634526 AAACCACCAAATTTTAGGGGATTAA 57.365 32.000 12.32 0.00 0.00 1.40
2239 2418 7.400627 CCTAAACCACCAAATTTTAGGGGATTA 59.599 37.037 12.32 9.94 44.34 1.75
2240 2419 6.214615 CCTAAACCACCAAATTTTAGGGGATT 59.785 38.462 12.32 9.39 44.34 3.01
2241 2420 5.724370 CCTAAACCACCAAATTTTAGGGGAT 59.276 40.000 12.32 0.00 44.34 3.85
2242 2421 5.088026 CCTAAACCACCAAATTTTAGGGGA 58.912 41.667 12.32 0.00 44.34 4.81
2243 2422 5.414789 CCTAAACCACCAAATTTTAGGGG 57.585 43.478 10.34 4.94 44.34 4.79
2245 2424 6.673839 TTCCCTAAACCACCAAATTTTAGG 57.326 37.500 11.01 11.01 46.27 2.69
2248 2427 9.567776 CTTTATTTCCCTAAACCACCAAATTTT 57.432 29.630 0.00 0.00 0.00 1.82
2249 2428 8.939932 TCTTTATTTCCCTAAACCACCAAATTT 58.060 29.630 0.00 0.00 0.00 1.82
2250 2429 8.499288 TCTTTATTTCCCTAAACCACCAAATT 57.501 30.769 0.00 0.00 0.00 1.82
2251 2430 7.310423 GCTCTTTATTTCCCTAAACCACCAAAT 60.310 37.037 0.00 0.00 0.00 2.32
2252 2431 6.014925 GCTCTTTATTTCCCTAAACCACCAAA 60.015 38.462 0.00 0.00 0.00 3.28
2253 2432 5.479027 GCTCTTTATTTCCCTAAACCACCAA 59.521 40.000 0.00 0.00 0.00 3.67
2254 2433 5.014202 GCTCTTTATTTCCCTAAACCACCA 58.986 41.667 0.00 0.00 0.00 4.17
2255 2434 5.014202 TGCTCTTTATTTCCCTAAACCACC 58.986 41.667 0.00 0.00 0.00 4.61
2256 2435 6.377146 TGATGCTCTTTATTTCCCTAAACCAC 59.623 38.462 0.00 0.00 0.00 4.16
2257 2436 6.377146 GTGATGCTCTTTATTTCCCTAAACCA 59.623 38.462 0.00 0.00 0.00 3.67
2258 2437 6.603599 AGTGATGCTCTTTATTTCCCTAAACC 59.396 38.462 0.00 0.00 0.00 3.27
2259 2438 7.631717 AGTGATGCTCTTTATTTCCCTAAAC 57.368 36.000 0.00 0.00 0.00 2.01
2260 2439 9.561069 GATAGTGATGCTCTTTATTTCCCTAAA 57.439 33.333 0.00 0.00 0.00 1.85
2261 2440 8.157476 GGATAGTGATGCTCTTTATTTCCCTAA 58.843 37.037 0.00 0.00 0.00 2.69
2262 2441 7.525526 CGGATAGTGATGCTCTTTATTTCCCTA 60.526 40.741 0.00 0.00 0.00 3.53
2263 2442 6.538263 GGATAGTGATGCTCTTTATTTCCCT 58.462 40.000 0.00 0.00 0.00 4.20
2264 2443 5.409826 CGGATAGTGATGCTCTTTATTTCCC 59.590 44.000 0.00 0.00 0.00 3.97
2265 2444 6.223852 TCGGATAGTGATGCTCTTTATTTCC 58.776 40.000 0.00 0.00 0.00 3.13
2266 2445 7.064016 GGATCGGATAGTGATGCTCTTTATTTC 59.936 40.741 0.00 0.00 32.14 2.17
2267 2446 6.876257 GGATCGGATAGTGATGCTCTTTATTT 59.124 38.462 0.00 0.00 32.14 1.40
2268 2447 6.402222 GGATCGGATAGTGATGCTCTTTATT 58.598 40.000 0.00 0.00 32.14 1.40
2269 2448 5.105146 GGGATCGGATAGTGATGCTCTTTAT 60.105 44.000 0.00 0.00 34.90 1.40
2270 2449 4.220821 GGGATCGGATAGTGATGCTCTTTA 59.779 45.833 0.00 0.00 34.90 1.85
2271 2450 3.007398 GGGATCGGATAGTGATGCTCTTT 59.993 47.826 0.00 0.00 34.90 2.52
2272 2451 2.564947 GGGATCGGATAGTGATGCTCTT 59.435 50.000 0.00 0.00 34.90 2.85
2273 2452 2.175202 GGGATCGGATAGTGATGCTCT 58.825 52.381 0.00 0.00 34.90 4.09
2274 2453 1.895798 TGGGATCGGATAGTGATGCTC 59.104 52.381 0.00 0.00 34.90 4.26
2275 2454 2.015456 TGGGATCGGATAGTGATGCT 57.985 50.000 0.00 0.00 34.90 3.79
2276 2455 2.224281 TGTTGGGATCGGATAGTGATGC 60.224 50.000 0.00 0.00 33.87 3.91
2277 2456 3.751479 TGTTGGGATCGGATAGTGATG 57.249 47.619 0.00 0.00 0.00 3.07
2278 2457 4.771114 TTTGTTGGGATCGGATAGTGAT 57.229 40.909 0.00 0.00 0.00 3.06
2279 2458 4.019681 ACTTTTGTTGGGATCGGATAGTGA 60.020 41.667 0.00 0.00 0.00 3.41
2280 2459 4.261801 ACTTTTGTTGGGATCGGATAGTG 58.738 43.478 0.00 0.00 0.00 2.74
2281 2460 4.019681 TGACTTTTGTTGGGATCGGATAGT 60.020 41.667 0.00 0.00 0.00 2.12
2282 2461 4.513442 TGACTTTTGTTGGGATCGGATAG 58.487 43.478 0.00 0.00 0.00 2.08
2283 2462 4.561500 TGACTTTTGTTGGGATCGGATA 57.438 40.909 0.00 0.00 0.00 2.59
2284 2463 3.433306 TGACTTTTGTTGGGATCGGAT 57.567 42.857 0.00 0.00 0.00 4.18
2285 2464 2.940994 TGACTTTTGTTGGGATCGGA 57.059 45.000 0.00 0.00 0.00 4.55
2286 2465 5.504010 CGAATATGACTTTTGTTGGGATCGG 60.504 44.000 0.00 0.00 0.00 4.18
2287 2466 5.293324 TCGAATATGACTTTTGTTGGGATCG 59.707 40.000 0.00 0.00 0.00 3.69
2288 2467 6.238484 CCTCGAATATGACTTTTGTTGGGATC 60.238 42.308 0.00 0.00 0.00 3.36
2289 2468 5.590259 CCTCGAATATGACTTTTGTTGGGAT 59.410 40.000 0.00 0.00 0.00 3.85
2290 2469 4.941263 CCTCGAATATGACTTTTGTTGGGA 59.059 41.667 0.00 0.00 0.00 4.37
2291 2470 4.941263 TCCTCGAATATGACTTTTGTTGGG 59.059 41.667 0.00 0.00 0.00 4.12
2292 2471 6.494893 TTCCTCGAATATGACTTTTGTTGG 57.505 37.500 0.00 0.00 0.00 3.77
2293 2472 7.326063 GGTTTTCCTCGAATATGACTTTTGTTG 59.674 37.037 0.00 0.00 36.94 3.33
2294 2473 7.368059 GGTTTTCCTCGAATATGACTTTTGTT 58.632 34.615 0.00 0.00 36.94 2.83
2295 2474 6.909909 GGTTTTCCTCGAATATGACTTTTGT 58.090 36.000 0.00 0.00 36.94 2.83
2312 2491 7.624360 ATTCCTCAAAACAAAAAGGTTTTCC 57.376 32.000 1.38 0.00 45.20 3.13
2313 2492 9.982291 GTAATTCCTCAAAACAAAAAGGTTTTC 57.018 29.630 1.38 0.00 45.20 2.29
2317 2496 8.141909 GCTAGTAATTCCTCAAAACAAAAAGGT 58.858 33.333 0.00 0.00 0.00 3.50
2318 2497 8.141268 TGCTAGTAATTCCTCAAAACAAAAAGG 58.859 33.333 0.00 0.00 0.00 3.11
2319 2498 9.528018 TTGCTAGTAATTCCTCAAAACAAAAAG 57.472 29.630 0.00 0.00 0.00 2.27
2320 2499 9.877178 TTTGCTAGTAATTCCTCAAAACAAAAA 57.123 25.926 0.00 0.00 0.00 1.94
2321 2500 9.877178 TTTTGCTAGTAATTCCTCAAAACAAAA 57.123 25.926 0.00 0.00 31.17 2.44
2322 2501 9.528018 CTTTTGCTAGTAATTCCTCAAAACAAA 57.472 29.630 0.00 0.00 32.29 2.83
2323 2502 8.141268 CCTTTTGCTAGTAATTCCTCAAAACAA 58.859 33.333 0.00 0.00 32.29 2.83
2324 2503 7.657336 CCTTTTGCTAGTAATTCCTCAAAACA 58.343 34.615 0.00 0.00 32.29 2.83
2325 2504 6.586463 GCCTTTTGCTAGTAATTCCTCAAAAC 59.414 38.462 0.00 0.00 36.87 2.43
2326 2505 6.295067 GGCCTTTTGCTAGTAATTCCTCAAAA 60.295 38.462 0.00 0.00 40.92 2.44
2327 2506 5.185056 GGCCTTTTGCTAGTAATTCCTCAAA 59.815 40.000 0.00 0.00 40.92 2.69
2328 2507 4.705023 GGCCTTTTGCTAGTAATTCCTCAA 59.295 41.667 0.00 0.00 40.92 3.02
2329 2508 4.270008 GGCCTTTTGCTAGTAATTCCTCA 58.730 43.478 0.00 0.00 40.92 3.86
2330 2509 3.632604 GGGCCTTTTGCTAGTAATTCCTC 59.367 47.826 0.84 0.00 40.92 3.71
2331 2510 3.632333 GGGCCTTTTGCTAGTAATTCCT 58.368 45.455 0.84 0.00 40.92 3.36
2332 2511 2.357952 CGGGCCTTTTGCTAGTAATTCC 59.642 50.000 0.84 0.00 40.92 3.01
2333 2512 3.014623 ACGGGCCTTTTGCTAGTAATTC 58.985 45.455 0.84 0.00 40.92 2.17
2567 2749 2.928334 AGCTGGCGATCAGATGATTTT 58.072 42.857 9.87 0.00 46.18 1.82
2623 2805 6.752351 TCTCTTATATTGAGTGAGCGAACAAC 59.248 38.462 0.00 0.00 33.59 3.32
2722 2944 5.196695 GGAGCTCCAGTTAAAGATGGAAAT 58.803 41.667 28.43 0.08 44.82 2.17
2871 3100 3.133003 TCAGGTCTGTGCTAGCTATTTCC 59.867 47.826 17.23 12.60 0.00 3.13
2886 3115 6.042093 TGTTTGTCTGTATCTCTTTCAGGTCT 59.958 38.462 0.00 0.00 0.00 3.85
2952 3183 0.458370 GCGCGCCAATGAATTTTCCT 60.458 50.000 23.24 0.00 0.00 3.36
2953 3184 0.458370 AGCGCGCCAATGAATTTTCC 60.458 50.000 30.33 0.00 0.00 3.13
2954 3185 0.916581 GAGCGCGCCAATGAATTTTC 59.083 50.000 30.33 10.97 0.00 2.29
2955 3186 0.798009 CGAGCGCGCCAATGAATTTT 60.798 50.000 30.33 4.23 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.