Multiple sequence alignment - TraesCS1D01G431300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G431300 chr1D 100.000 4234 0 0 1 4234 481549498 481553731 0.000000e+00 7819.0
1 TraesCS1D01G431300 chr1D 91.646 2011 129 16 1221 3220 481453708 481451726 0.000000e+00 2747.0
2 TraesCS1D01G431300 chr1D 82.271 1365 194 29 1220 2578 481501629 481500307 0.000000e+00 1136.0
3 TraesCS1D01G431300 chr1D 86.239 109 15 0 1300 1408 481489239 481489131 7.440000e-23 119.0
4 TraesCS1D01G431300 chr1D 100.000 28 0 0 1552 1579 326909113 326909086 8.000000e-03 52.8
5 TraesCS1D01G431300 chr1B 92.081 3119 162 33 1 3081 669921553 669924624 0.000000e+00 4313.0
6 TraesCS1D01G431300 chr1B 85.542 1819 206 25 1220 3011 670159100 670160888 0.000000e+00 1849.0
7 TraesCS1D01G431300 chr1B 83.065 1116 166 15 1220 2331 670142837 670143933 0.000000e+00 992.0
8 TraesCS1D01G431300 chr1B 86.813 182 19 4 690 870 670158601 670158778 9.290000e-47 198.0
9 TraesCS1D01G431300 chr1A 94.996 2498 100 15 1168 3652 577985439 577987924 0.000000e+00 3897.0
10 TraesCS1D01G431300 chr1A 82.749 1368 186 31 1220 2580 578208263 578206939 0.000000e+00 1173.0
11 TraesCS1D01G431300 chr1A 90.560 339 27 3 3893 4228 578010456 578010792 1.080000e-120 444.0
12 TraesCS1D01G431300 chr1A 98.305 177 2 1 3719 3894 577989673 577989849 4.110000e-80 309.0
13 TraesCS1D01G431300 chr1A 78.295 129 22 4 3985 4110 459443456 459443331 1.260000e-10 78.7
14 TraesCS1D01G431300 chr1A 100.000 28 0 0 1552 1579 410156049 410156076 8.000000e-03 52.8
15 TraesCS1D01G431300 chr2D 92.017 238 16 3 3264 3500 407952570 407952805 8.770000e-87 331.0
16 TraesCS1D01G431300 chr2D 82.184 174 28 3 2591 2764 189286437 189286607 3.410000e-31 147.0
17 TraesCS1D01G431300 chr5A 91.102 236 20 1 3265 3499 694506903 694506668 6.830000e-83 318.0
18 TraesCS1D01G431300 chr5A 91.748 206 16 1 3268 3472 22060587 22060792 6.930000e-73 285.0
19 TraesCS1D01G431300 chr7A 91.379 232 18 2 3269 3499 459003739 459003509 2.460000e-82 316.0
20 TraesCS1D01G431300 chr6A 89.362 235 24 1 3266 3499 76667292 76667526 1.150000e-75 294.0
21 TraesCS1D01G431300 chr6A 80.851 235 39 6 2575 2806 558982038 558982269 3.360000e-41 180.0
22 TraesCS1D01G431300 chr2A 89.655 232 23 1 3269 3499 613140176 613139945 1.150000e-75 294.0
23 TraesCS1D01G431300 chr4B 86.920 237 28 3 3265 3499 40607342 40607107 3.250000e-66 263.0
24 TraesCS1D01G431300 chr2B 89.785 186 18 1 3315 3499 575880663 575880478 1.970000e-58 237.0
25 TraesCS1D01G431300 chr2B 77.212 373 56 13 2178 2543 245130060 245130410 1.550000e-44 191.0
26 TraesCS1D01G431300 chr2B 87.500 104 13 0 2410 2513 245130623 245130726 2.070000e-23 121.0
27 TraesCS1D01G431300 chr7B 82.895 228 34 3 2578 2804 520417958 520418181 2.580000e-47 200.0
28 TraesCS1D01G431300 chr5D 78.307 189 33 7 3924 4110 497414571 497414753 9.620000e-22 115.0
29 TraesCS1D01G431300 chr5D 77.778 189 34 7 3924 4110 497452869 497453051 4.480000e-20 110.0
30 TraesCS1D01G431300 chr5D 77.778 189 34 7 3924 4110 497471087 497471269 4.480000e-20 110.0
31 TraesCS1D01G431300 chr5D 81.967 122 20 2 3991 4110 497152169 497152048 7.490000e-18 102.0
32 TraesCS1D01G431300 chr3D 79.389 131 25 2 3983 4112 3004447 3004576 1.620000e-14 91.6
33 TraesCS1D01G431300 chrUn 78.740 127 24 2 3984 4109 90091822 90091698 9.760000e-12 82.4
34 TraesCS1D01G431300 chr3B 82.353 85 9 3 4032 4110 712757277 712757361 7.600000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G431300 chr1D 481549498 481553731 4233 False 7819.0 7819 100.0000 1 4234 1 chr1D.!!$F1 4233
1 TraesCS1D01G431300 chr1D 481451726 481453708 1982 True 2747.0 2747 91.6460 1221 3220 1 chr1D.!!$R2 1999
2 TraesCS1D01G431300 chr1D 481500307 481501629 1322 True 1136.0 1136 82.2710 1220 2578 1 chr1D.!!$R4 1358
3 TraesCS1D01G431300 chr1B 669921553 669924624 3071 False 4313.0 4313 92.0810 1 3081 1 chr1B.!!$F1 3080
4 TraesCS1D01G431300 chr1B 670158601 670160888 2287 False 1023.5 1849 86.1775 690 3011 2 chr1B.!!$F3 2321
5 TraesCS1D01G431300 chr1B 670142837 670143933 1096 False 992.0 992 83.0650 1220 2331 1 chr1B.!!$F2 1111
6 TraesCS1D01G431300 chr1A 577985439 577989849 4410 False 2103.0 3897 96.6505 1168 3894 2 chr1A.!!$F3 2726
7 TraesCS1D01G431300 chr1A 578206939 578208263 1324 True 1173.0 1173 82.7490 1220 2580 1 chr1A.!!$R2 1360

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
230 235 0.032416 AGTGTATGGCGGTAGGGTCT 60.032 55.0 0.00 0.00 0.00 3.85 F
527 535 0.107017 ATCCAGGCATGTACAGGCAC 60.107 55.0 31.09 20.73 40.32 5.01 F
587 595 0.405973 AAGACAAGAGAAAGGGCCCC 59.594 55.0 21.43 2.42 0.00 5.80 F
2339 2391 0.378257 CAAGCTATTGCGTGGCGAAT 59.622 50.0 7.14 0.00 43.27 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1061 1082 0.106819 GTCATCAGGGCCATGCTCTT 60.107 55.0 13.87 0.0 34.72 2.85 R
1457 1506 0.396811 AGTAGGCCTTCACGTTGCTT 59.603 50.0 12.58 0.0 0.00 3.91 R
2817 2869 0.539669 AACTTACTTGGTGCCTGCCC 60.540 55.0 0.00 0.0 0.00 5.36 R
3666 3766 0.037046 GCTTGGGCCATCCTTTGTTG 60.037 55.0 7.26 0.0 36.20 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.140623 GCATGGGCAAATTCACAGTTTT 58.859 40.909 0.00 0.00 40.72 2.43
57 58 8.725405 TGATCATTTTCCGTTAGTTTAGCATA 57.275 30.769 0.00 0.00 0.00 3.14
66 67 7.553334 TCCGTTAGTTTAGCATAATCAGACTT 58.447 34.615 0.00 0.00 0.00 3.01
101 102 9.639601 AAATTATTTCGAATCTGACCCTTTTTC 57.360 29.630 0.00 0.00 0.00 2.29
105 106 5.740290 TCGAATCTGACCCTTTTTCTACT 57.260 39.130 0.00 0.00 0.00 2.57
108 109 5.348997 CGAATCTGACCCTTTTTCTACTGTC 59.651 44.000 0.00 0.00 0.00 3.51
114 116 6.126409 TGACCCTTTTTCTACTGTCATTGTT 58.874 36.000 0.00 0.00 0.00 2.83
154 159 1.339711 GTGCCGTCACATCATTTTGC 58.660 50.000 0.00 0.00 42.66 3.68
159 164 3.247173 GCCGTCACATCATTTTGCAAAAA 59.753 39.130 27.10 13.34 0.00 1.94
204 209 3.514309 GGCGATAGGATGTGTTACCCTAT 59.486 47.826 0.00 0.00 43.77 2.57
208 213 5.279506 CGATAGGATGTGTTACCCTATTGCT 60.280 44.000 0.00 0.00 41.82 3.91
214 219 6.874134 GGATGTGTTACCCTATTGCTATAGTG 59.126 42.308 13.12 5.42 33.29 2.74
219 224 7.817962 GTGTTACCCTATTGCTATAGTGTATGG 59.182 40.741 13.12 9.33 30.55 2.74
221 226 4.081642 ACCCTATTGCTATAGTGTATGGCG 60.082 45.833 13.12 0.00 44.55 5.69
227 232 2.165845 GCTATAGTGTATGGCGGTAGGG 59.834 54.545 0.84 0.00 32.98 3.53
228 233 2.393630 ATAGTGTATGGCGGTAGGGT 57.606 50.000 0.00 0.00 0.00 4.34
229 234 1.696063 TAGTGTATGGCGGTAGGGTC 58.304 55.000 0.00 0.00 0.00 4.46
230 235 0.032416 AGTGTATGGCGGTAGGGTCT 60.032 55.000 0.00 0.00 0.00 3.85
251 256 7.116805 GGGTCTTCTTCTTTGTTTTATTGCATG 59.883 37.037 0.00 0.00 0.00 4.06
257 262 5.055144 TCTTTGTTTTATTGCATGCAAGCA 58.945 33.333 34.15 23.07 43.99 3.91
277 284 6.064846 AGCACTTATTATAACTGCATGCAC 57.935 37.500 18.46 1.27 32.99 4.57
279 286 5.504010 GCACTTATTATAACTGCATGCACGT 60.504 40.000 18.46 16.05 0.00 4.49
286 293 1.815421 CTGCATGCACGTCCCTACC 60.815 63.158 18.46 0.00 0.00 3.18
295 302 1.447314 CGTCCCTACCGCCAAAGAC 60.447 63.158 0.00 0.00 0.00 3.01
325 333 8.119891 AGTGGTAGGGTATTTTTCATACCAAAT 58.880 33.333 12.13 0.00 43.03 2.32
328 336 6.806668 AGGGTATTTTTCATACCAAATGGG 57.193 37.500 12.13 0.00 44.43 4.00
335 343 0.738389 CATACCAAATGGGCGTGACC 59.262 55.000 4.17 0.00 42.05 4.02
348 356 1.981533 GCGTGACCGTGTAAGTAAGTC 59.018 52.381 0.00 0.00 36.15 3.01
355 363 2.478539 CCGTGTAAGTAAGTCCTACCGC 60.479 54.545 0.00 0.00 0.00 5.68
367 375 1.695242 TCCTACCGCCAAAGACTTTGA 59.305 47.619 26.14 7.65 43.26 2.69
375 383 3.596214 GCCAAAGACTTTGACGATAGGA 58.404 45.455 26.14 0.00 43.26 2.94
391 399 2.848678 AGGATGTGCTACCCTACTGA 57.151 50.000 0.00 0.00 0.00 3.41
398 406 4.980573 TGTGCTACCCTACTGACAAAAAT 58.019 39.130 0.00 0.00 0.00 1.82
404 412 7.335924 TGCTACCCTACTGACAAAAATAATGAC 59.664 37.037 0.00 0.00 0.00 3.06
405 413 7.335924 GCTACCCTACTGACAAAAATAATGACA 59.664 37.037 0.00 0.00 0.00 3.58
424 432 8.655935 AATGACAATAGAAAAAGGGTCAGATT 57.344 30.769 0.00 0.00 38.50 2.40
425 433 8.655935 ATGACAATAGAAAAAGGGTCAGATTT 57.344 30.769 0.00 0.00 38.50 2.17
426 434 7.885297 TGACAATAGAAAAAGGGTCAGATTTG 58.115 34.615 0.00 0.00 32.13 2.32
427 435 7.723616 TGACAATAGAAAAAGGGTCAGATTTGA 59.276 33.333 0.00 0.00 32.13 2.69
428 436 8.477419 ACAATAGAAAAAGGGTCAGATTTGAA 57.523 30.769 0.00 0.00 34.49 2.69
429 437 8.923270 ACAATAGAAAAAGGGTCAGATTTGAAA 58.077 29.630 0.00 0.00 34.49 2.69
430 438 9.762933 CAATAGAAAAAGGGTCAGATTTGAAAA 57.237 29.630 0.00 0.00 34.49 2.29
432 440 9.764363 ATAGAAAAAGGGTCAGATTTGAAAAAC 57.236 29.630 0.00 0.00 34.49 2.43
433 441 7.851228 AGAAAAAGGGTCAGATTTGAAAAACT 58.149 30.769 0.00 0.00 34.49 2.66
436 444 8.862325 AAAAGGGTCAGATTTGAAAAACTTTT 57.138 26.923 10.19 10.19 34.49 2.27
437 445 9.952030 AAAAGGGTCAGATTTGAAAAACTTTTA 57.048 25.926 12.56 0.00 35.12 1.52
438 446 8.942338 AAGGGTCAGATTTGAAAAACTTTTAC 57.058 30.769 0.00 0.00 34.49 2.01
439 447 8.073467 AGGGTCAGATTTGAAAAACTTTTACA 57.927 30.769 0.00 0.00 34.49 2.41
440 448 7.979537 AGGGTCAGATTTGAAAAACTTTTACAC 59.020 33.333 0.00 0.00 34.49 2.90
441 449 7.762159 GGGTCAGATTTGAAAAACTTTTACACA 59.238 33.333 0.00 0.00 34.49 3.72
442 450 9.313118 GGTCAGATTTGAAAAACTTTTACACAT 57.687 29.630 0.00 0.00 34.49 3.21
495 503 3.130633 GGTCAAAACAGTGAAATTGCCC 58.869 45.455 0.00 0.00 0.00 5.36
524 532 3.312421 CGTTTTATCCAGGCATGTACAGG 59.688 47.826 2.43 2.43 0.00 4.00
527 535 0.107017 ATCCAGGCATGTACAGGCAC 60.107 55.000 31.09 20.73 40.32 5.01
528 536 1.002257 CCAGGCATGTACAGGCACA 60.002 57.895 31.09 0.00 40.32 4.57
529 537 0.608856 CCAGGCATGTACAGGCACAA 60.609 55.000 31.09 0.00 40.32 3.33
530 538 0.523072 CAGGCATGTACAGGCACAAC 59.477 55.000 31.09 15.49 40.32 3.32
531 539 0.609131 AGGCATGTACAGGCACAACC 60.609 55.000 31.09 15.13 40.32 3.77
532 540 0.893270 GGCATGTACAGGCACAACCA 60.893 55.000 31.09 0.00 43.14 3.67
533 541 1.176527 GCATGTACAGGCACAACCAT 58.823 50.000 26.43 0.00 43.14 3.55
534 542 1.135315 GCATGTACAGGCACAACCATG 60.135 52.381 26.43 4.57 43.14 3.66
535 543 2.435422 CATGTACAGGCACAACCATGA 58.565 47.619 0.33 0.00 43.14 3.07
537 545 1.419762 TGTACAGGCACAACCATGAGT 59.580 47.619 0.00 0.00 43.14 3.41
538 546 2.076863 GTACAGGCACAACCATGAGTC 58.923 52.381 0.00 0.00 43.14 3.36
539 547 0.473755 ACAGGCACAACCATGAGTCA 59.526 50.000 0.00 0.00 43.14 3.41
563 571 4.819761 TGCCGGCGAGCATCAGAC 62.820 66.667 23.90 0.00 38.00 3.51
587 595 0.405973 AAGACAAGAGAAAGGGCCCC 59.594 55.000 21.43 2.42 0.00 5.80
641 649 6.876789 TCGAGTGGCATAGTTTCTTTATTCAA 59.123 34.615 0.00 0.00 0.00 2.69
642 650 7.552687 TCGAGTGGCATAGTTTCTTTATTCAAT 59.447 33.333 0.00 0.00 0.00 2.57
643 651 7.852945 CGAGTGGCATAGTTTCTTTATTCAATC 59.147 37.037 0.00 0.00 0.00 2.67
682 690 9.990868 AAAGGAAGATTACAAATACCAGGTAAT 57.009 29.630 2.53 0.00 39.65 1.89
761 776 3.877559 CCCAAGTATGCATGTCTCTTCA 58.122 45.455 10.16 0.00 0.00 3.02
866 881 5.450550 GCCTCACTAGTAATCCCAATTTTGC 60.451 44.000 0.00 0.00 0.00 3.68
903 924 7.848051 GTCTTGCACGAAGAGAAATATAATGTG 59.152 37.037 0.00 0.00 41.58 3.21
905 926 6.112734 TGCACGAAGAGAAATATAATGTGGT 58.887 36.000 0.00 0.00 0.00 4.16
983 1004 2.548067 CGCCGACTATAAATTCCAGCCT 60.548 50.000 0.00 0.00 0.00 4.58
1030 1051 2.231529 CCCGATCGTTGTCTCCTCTAT 58.768 52.381 15.09 0.00 0.00 1.98
1041 1062 3.981375 TGTCTCCTCTATACCCTAGCTCA 59.019 47.826 0.00 0.00 0.00 4.26
1059 1080 0.532573 CACTCCACTCCGCACACTAT 59.467 55.000 0.00 0.00 0.00 2.12
1061 1082 0.817654 CTCCACTCCGCACACTATGA 59.182 55.000 0.00 0.00 0.00 2.15
1072 1093 1.945394 CACACTATGAAGAGCATGGCC 59.055 52.381 0.00 0.00 38.91 5.36
1091 1112 3.144120 CTGATGACCCGCCTCCTCG 62.144 68.421 0.00 0.00 0.00 4.63
1099 1120 3.441290 CGCCTCCTCGTCGTCCTT 61.441 66.667 0.00 0.00 0.00 3.36
1105 1126 2.100603 CTCGTCGTCCTTCTCGGC 59.899 66.667 0.00 0.00 0.00 5.54
1106 1127 2.670592 TCGTCGTCCTTCTCGGCA 60.671 61.111 0.00 0.00 32.96 5.69
1147 1168 3.746949 CTCCCCTGCAGGTGATCGC 62.747 68.421 30.63 0.00 0.00 4.58
1183 1219 3.257375 AGATGTGCAGGTGTAGTTTCGTA 59.743 43.478 0.00 0.00 0.00 3.43
1185 1221 3.997762 TGTGCAGGTGTAGTTTCGTAAT 58.002 40.909 0.00 0.00 0.00 1.89
1186 1222 5.136816 TGTGCAGGTGTAGTTTCGTAATA 57.863 39.130 0.00 0.00 0.00 0.98
1187 1223 5.165676 TGTGCAGGTGTAGTTTCGTAATAG 58.834 41.667 0.00 0.00 0.00 1.73
1188 1224 5.166398 GTGCAGGTGTAGTTTCGTAATAGT 58.834 41.667 0.00 0.00 0.00 2.12
1298 1347 1.301401 GTCCGTGGTGCAACTGCTA 60.301 57.895 2.04 0.00 42.66 3.49
1373 1422 1.973281 CTCGCTGGCCAACACCAAT 60.973 57.895 7.01 0.00 39.86 3.16
1595 1644 2.622962 GGCGGCGTTGGCTAAACTT 61.623 57.895 9.37 0.00 39.81 2.66
2339 2391 0.378257 CAAGCTATTGCGTGGCGAAT 59.622 50.000 7.14 0.00 43.27 3.34
2817 2869 3.560278 GCGCCGGTACCATTGTCG 61.560 66.667 13.54 8.15 0.00 4.35
2852 2908 7.284351 CAAGTAAGTTCACTTCTGAATTCGTC 58.716 38.462 0.04 0.00 38.69 4.20
2859 2915 7.227512 AGTTCACTTCTGAATTCGTCATTCTTT 59.772 33.333 0.04 0.00 41.91 2.52
2860 2916 6.891624 TCACTTCTGAATTCGTCATTCTTTG 58.108 36.000 0.04 3.46 41.91 2.77
2861 2917 6.483307 TCACTTCTGAATTCGTCATTCTTTGT 59.517 34.615 0.04 3.78 41.91 2.83
2862 2918 7.012327 TCACTTCTGAATTCGTCATTCTTTGTT 59.988 33.333 0.04 0.00 41.91 2.83
2863 2919 7.645340 CACTTCTGAATTCGTCATTCTTTGTTT 59.355 33.333 0.04 0.00 41.91 2.83
2864 2920 7.857885 ACTTCTGAATTCGTCATTCTTTGTTTC 59.142 33.333 0.04 0.00 41.91 2.78
2865 2921 7.258022 TCTGAATTCGTCATTCTTTGTTTCA 57.742 32.000 0.04 0.00 41.91 2.69
2866 2922 7.702386 TCTGAATTCGTCATTCTTTGTTTCAA 58.298 30.769 0.04 0.00 41.91 2.69
2867 2923 7.643764 TCTGAATTCGTCATTCTTTGTTTCAAC 59.356 33.333 0.04 0.00 41.91 3.18
2902 2959 7.056002 AGAAAATGAACGTTTTGGTTTGTTC 57.944 32.000 0.46 0.00 40.76 3.18
2986 3073 2.504367 GTGAAGAAACTAGCCAAGGCA 58.496 47.619 14.40 0.00 44.88 4.75
3172 3269 0.104855 TTAGCTACTCTGGCATGGCG 59.895 55.000 15.27 9.60 0.00 5.69
3228 3325 6.377146 TGCTCCATTTTAATAAAGGGTCTGAC 59.623 38.462 0.00 0.00 43.83 3.51
3245 3342 9.063484 AGGGTCTGACTATGTCATATCTAGATA 57.937 37.037 14.76 14.76 41.94 1.98
3287 3384 1.508632 TTTTTGAGACTTCCTCGCCG 58.491 50.000 0.00 0.00 44.92 6.46
3289 3386 1.183030 TTTGAGACTTCCTCGCCGGA 61.183 55.000 5.05 0.00 44.92 5.14
3306 3403 4.093703 CGCCGGACTTTATTTACATTGTCA 59.906 41.667 5.05 0.00 0.00 3.58
3342 3440 5.775195 GGATAAAATTCAAATCTCCGGGGAT 59.225 40.000 12.32 12.32 0.00 3.85
3359 3457 0.249398 GATGCCTAACCAGACACGGT 59.751 55.000 0.00 0.00 42.71 4.83
3363 3461 1.375523 CTAACCAGACACGGTGGCC 60.376 63.158 11.09 0.00 39.95 5.36
3391 3489 1.647545 GCGAAAGTGCATGCCTAGCA 61.648 55.000 16.68 0.00 44.86 3.49
3405 3503 2.559440 CCTAGCAAGATTGTGAGCCTC 58.441 52.381 0.00 0.00 0.00 4.70
3411 3509 4.282703 AGCAAGATTGTGAGCCTCAAAATT 59.717 37.500 11.38 0.00 34.60 1.82
3413 3511 5.775686 CAAGATTGTGAGCCTCAAAATTCA 58.224 37.500 11.38 0.00 34.60 2.57
3431 3529 3.634397 TCAAGCTCCTAAACTCATGGG 57.366 47.619 0.00 0.00 0.00 4.00
3443 3541 6.589907 CCTAAACTCATGGGCAAAATTACAAC 59.410 38.462 0.00 0.00 0.00 3.32
3444 3542 5.806654 AACTCATGGGCAAAATTACAACT 57.193 34.783 0.00 0.00 0.00 3.16
3465 3563 8.821894 ACAACTAATAAAAGCATTCGATCTCTC 58.178 33.333 0.00 0.00 0.00 3.20
3571 3669 2.181021 GACTAGCCCACCACGTCG 59.819 66.667 0.00 0.00 0.00 5.12
3638 3738 0.976641 TGGCTTACTGACACTGGAGG 59.023 55.000 0.00 0.00 0.00 4.30
3646 3746 3.655810 GACACTGGAGGCAGAGGCG 62.656 68.421 0.00 0.00 42.47 5.52
3656 3756 3.114616 CAGAGGCGAGCGGTTGTG 61.115 66.667 3.38 0.00 0.00 3.33
3657 3757 4.379243 AGAGGCGAGCGGTTGTGG 62.379 66.667 3.38 0.00 0.00 4.17
3663 3763 4.021925 GAGCGGTTGTGGCCTCCT 62.022 66.667 3.32 0.00 0.00 3.69
3664 3764 4.335647 AGCGGTTGTGGCCTCCTG 62.336 66.667 3.32 0.00 0.00 3.86
3674 3774 3.369921 GCCTCCTGCCAACAAAGG 58.630 61.111 0.00 0.00 33.70 3.11
3675 3775 1.228552 GCCTCCTGCCAACAAAGGA 60.229 57.895 0.00 0.00 40.36 3.36
3676 3776 0.613012 GCCTCCTGCCAACAAAGGAT 60.613 55.000 0.00 0.00 41.74 3.24
3677 3777 1.180029 CCTCCTGCCAACAAAGGATG 58.820 55.000 0.00 0.00 41.74 3.51
3678 3778 1.180029 CTCCTGCCAACAAAGGATGG 58.820 55.000 0.00 0.00 41.74 3.51
3682 3782 4.537260 CCAACAAAGGATGGCCCA 57.463 55.556 0.00 0.00 37.41 5.36
3683 3783 2.757313 CCAACAAAGGATGGCCCAA 58.243 52.632 0.00 0.00 37.41 4.12
3684 3784 0.609662 CCAACAAAGGATGGCCCAAG 59.390 55.000 0.00 0.00 37.41 3.61
3685 3785 0.037046 CAACAAAGGATGGCCCAAGC 60.037 55.000 0.00 0.00 37.41 4.01
3686 3786 1.535204 AACAAAGGATGGCCCAAGCG 61.535 55.000 0.00 0.00 41.24 4.68
3687 3787 2.362889 AAAGGATGGCCCAAGCGG 60.363 61.111 0.00 0.00 41.24 5.52
3688 3788 2.917897 AAAGGATGGCCCAAGCGGA 61.918 57.895 0.00 0.00 41.24 5.54
3689 3789 2.843912 AAAGGATGGCCCAAGCGGAG 62.844 60.000 0.00 0.00 41.24 4.63
3894 5712 6.009589 CACCCTACATCTCTCACTCATCTAT 58.990 44.000 0.00 0.00 0.00 1.98
3895 5713 6.493115 CACCCTACATCTCTCACTCATCTATT 59.507 42.308 0.00 0.00 0.00 1.73
3896 5714 7.667635 CACCCTACATCTCTCACTCATCTATTA 59.332 40.741 0.00 0.00 0.00 0.98
3897 5715 8.228206 ACCCTACATCTCTCACTCATCTATTAA 58.772 37.037 0.00 0.00 0.00 1.40
3898 5716 9.253832 CCCTACATCTCTCACTCATCTATTAAT 57.746 37.037 0.00 0.00 0.00 1.40
3902 5720 9.979578 ACATCTCTCACTCATCTATTAATCAAC 57.020 33.333 0.00 0.00 0.00 3.18
3903 5721 9.127006 CATCTCTCACTCATCTATTAATCAACG 57.873 37.037 0.00 0.00 0.00 4.10
3904 5722 8.451908 TCTCTCACTCATCTATTAATCAACGA 57.548 34.615 0.00 0.00 0.00 3.85
3905 5723 8.563732 TCTCTCACTCATCTATTAATCAACGAG 58.436 37.037 0.00 0.00 0.00 4.18
3906 5724 7.142021 TCTCACTCATCTATTAATCAACGAGC 58.858 38.462 0.00 0.00 0.00 5.03
3907 5725 6.805713 TCACTCATCTATTAATCAACGAGCA 58.194 36.000 0.00 0.00 0.00 4.26
3908 5726 7.264947 TCACTCATCTATTAATCAACGAGCAA 58.735 34.615 0.00 0.00 0.00 3.91
3909 5727 7.222805 TCACTCATCTATTAATCAACGAGCAAC 59.777 37.037 0.00 0.00 0.00 4.17
3910 5728 7.010460 CACTCATCTATTAATCAACGAGCAACA 59.990 37.037 0.00 0.00 0.00 3.33
3911 5729 7.549134 ACTCATCTATTAATCAACGAGCAACAA 59.451 33.333 0.00 0.00 0.00 2.83
3912 5730 8.437360 TCATCTATTAATCAACGAGCAACAAT 57.563 30.769 0.00 0.00 0.00 2.71
3913 5731 8.892723 TCATCTATTAATCAACGAGCAACAATT 58.107 29.630 0.00 0.00 0.00 2.32
3914 5732 9.507280 CATCTATTAATCAACGAGCAACAATTT 57.493 29.630 0.00 0.00 0.00 1.82
3916 5734 9.906660 TCTATTAATCAACGAGCAACAATTTTT 57.093 25.926 0.00 0.00 0.00 1.94
3949 5767 7.945033 TTTTGAACATTCTACAATTGAAGCC 57.055 32.000 13.59 0.00 0.00 4.35
3950 5768 5.295431 TGAACATTCTACAATTGAAGCCG 57.705 39.130 13.59 0.00 0.00 5.52
3951 5769 3.764885 ACATTCTACAATTGAAGCCGC 57.235 42.857 13.59 0.00 0.00 6.53
3952 5770 3.347216 ACATTCTACAATTGAAGCCGCT 58.653 40.909 13.59 0.00 0.00 5.52
3953 5771 3.375299 ACATTCTACAATTGAAGCCGCTC 59.625 43.478 13.59 0.00 0.00 5.03
3954 5772 2.760634 TCTACAATTGAAGCCGCTCA 57.239 45.000 13.59 0.00 0.00 4.26
3955 5773 2.346803 TCTACAATTGAAGCCGCTCAC 58.653 47.619 13.59 0.00 0.00 3.51
3956 5774 1.061131 CTACAATTGAAGCCGCTCACG 59.939 52.381 13.59 0.00 39.67 4.35
3957 5775 0.884704 ACAATTGAAGCCGCTCACGT 60.885 50.000 13.59 0.00 37.70 4.49
3958 5776 1.075542 CAATTGAAGCCGCTCACGTA 58.924 50.000 0.00 0.00 37.70 3.57
3959 5777 1.665679 CAATTGAAGCCGCTCACGTAT 59.334 47.619 0.00 0.00 37.70 3.06
3960 5778 2.863740 CAATTGAAGCCGCTCACGTATA 59.136 45.455 0.00 0.00 37.70 1.47
3961 5779 1.917273 TTGAAGCCGCTCACGTATAC 58.083 50.000 0.00 0.00 37.70 1.47
3962 5780 0.812549 TGAAGCCGCTCACGTATACA 59.187 50.000 3.32 0.00 37.70 2.29
3963 5781 1.202817 TGAAGCCGCTCACGTATACAA 59.797 47.619 3.32 0.00 37.70 2.41
3964 5782 1.852895 GAAGCCGCTCACGTATACAAG 59.147 52.381 3.32 0.00 37.70 3.16
3965 5783 0.527817 AGCCGCTCACGTATACAAGC 60.528 55.000 3.32 7.62 37.70 4.01
3966 5784 0.804544 GCCGCTCACGTATACAAGCA 60.805 55.000 17.24 0.00 37.70 3.91
3967 5785 1.852942 CCGCTCACGTATACAAGCAT 58.147 50.000 17.24 0.00 37.70 3.79
3968 5786 2.860971 GCCGCTCACGTATACAAGCATA 60.861 50.000 17.24 0.00 37.70 3.14
3969 5787 2.724690 CCGCTCACGTATACAAGCATAC 59.275 50.000 17.24 0.00 37.70 2.39
3970 5788 3.368495 CGCTCACGTATACAAGCATACA 58.632 45.455 17.24 0.00 34.39 2.29
3971 5789 3.179795 CGCTCACGTATACAAGCATACAC 59.820 47.826 17.24 0.00 34.39 2.90
3972 5790 3.489785 GCTCACGTATACAAGCATACACC 59.510 47.826 13.97 0.00 34.86 4.16
3973 5791 4.049186 CTCACGTATACAAGCATACACCC 58.951 47.826 3.32 0.00 31.96 4.61
3974 5792 3.447944 TCACGTATACAAGCATACACCCA 59.552 43.478 3.32 0.00 31.96 4.51
3975 5793 4.100344 TCACGTATACAAGCATACACCCAT 59.900 41.667 3.32 0.00 31.96 4.00
3976 5794 4.447724 CACGTATACAAGCATACACCCATC 59.552 45.833 3.32 0.00 31.96 3.51
3977 5795 4.344102 ACGTATACAAGCATACACCCATCT 59.656 41.667 3.32 0.00 31.96 2.90
3978 5796 5.163343 ACGTATACAAGCATACACCCATCTT 60.163 40.000 3.32 0.00 31.96 2.40
3979 5797 5.758296 CGTATACAAGCATACACCCATCTTT 59.242 40.000 3.32 0.00 31.96 2.52
3980 5798 6.926826 CGTATACAAGCATACACCCATCTTTA 59.073 38.462 3.32 0.00 31.96 1.85
3981 5799 7.602644 CGTATACAAGCATACACCCATCTTTAT 59.397 37.037 3.32 0.00 31.96 1.40
3982 5800 7.750229 ATACAAGCATACACCCATCTTTATG 57.250 36.000 0.00 0.00 0.00 1.90
3983 5801 5.754782 ACAAGCATACACCCATCTTTATGA 58.245 37.500 0.00 0.00 34.84 2.15
3984 5802 6.186957 ACAAGCATACACCCATCTTTATGAA 58.813 36.000 0.00 0.00 34.84 2.57
3985 5803 6.095440 ACAAGCATACACCCATCTTTATGAAC 59.905 38.462 0.00 0.00 34.84 3.18
3986 5804 5.754782 AGCATACACCCATCTTTATGAACA 58.245 37.500 0.00 0.00 34.84 3.18
3987 5805 5.590259 AGCATACACCCATCTTTATGAACAC 59.410 40.000 0.00 0.00 34.84 3.32
3988 5806 5.356751 GCATACACCCATCTTTATGAACACA 59.643 40.000 0.00 0.00 34.84 3.72
3989 5807 6.039717 GCATACACCCATCTTTATGAACACAT 59.960 38.462 0.00 0.00 34.84 3.21
3990 5808 5.902613 ACACCCATCTTTATGAACACATG 57.097 39.130 0.00 0.00 34.84 3.21
3991 5809 4.158394 ACACCCATCTTTATGAACACATGC 59.842 41.667 0.00 0.00 34.84 4.06
3992 5810 4.158209 CACCCATCTTTATGAACACATGCA 59.842 41.667 0.00 0.00 34.84 3.96
3993 5811 4.158394 ACCCATCTTTATGAACACATGCAC 59.842 41.667 0.00 0.00 34.84 4.57
3994 5812 4.345288 CCATCTTTATGAACACATGCACG 58.655 43.478 0.00 0.00 34.84 5.34
3995 5813 3.469899 TCTTTATGAACACATGCACGC 57.530 42.857 0.00 0.00 0.00 5.34
3996 5814 2.810852 TCTTTATGAACACATGCACGCA 59.189 40.909 0.00 0.00 0.00 5.24
3997 5815 2.610219 TTATGAACACATGCACGCAC 57.390 45.000 0.00 0.00 0.00 5.34
3998 5816 1.517242 TATGAACACATGCACGCACA 58.483 45.000 0.00 0.00 0.00 4.57
3999 5817 0.040157 ATGAACACATGCACGCACAC 60.040 50.000 0.00 0.00 0.00 3.82
4000 5818 1.354858 GAACACATGCACGCACACA 59.645 52.632 0.00 0.00 0.00 3.72
4001 5819 0.929824 GAACACATGCACGCACACAC 60.930 55.000 0.00 0.00 0.00 3.82
4002 5820 1.375853 AACACATGCACGCACACACT 61.376 50.000 0.00 0.00 0.00 3.55
4003 5821 0.531753 ACACATGCACGCACACACTA 60.532 50.000 0.00 0.00 0.00 2.74
4004 5822 0.110688 CACATGCACGCACACACTAC 60.111 55.000 0.00 0.00 0.00 2.73
4005 5823 1.227999 ACATGCACGCACACACTACC 61.228 55.000 0.00 0.00 0.00 3.18
4006 5824 1.671054 ATGCACGCACACACTACCC 60.671 57.895 0.00 0.00 0.00 3.69
4007 5825 3.047877 GCACGCACACACTACCCC 61.048 66.667 0.00 0.00 0.00 4.95
4008 5826 2.358247 CACGCACACACTACCCCC 60.358 66.667 0.00 0.00 0.00 5.40
4009 5827 2.525877 ACGCACACACTACCCCCT 60.526 61.111 0.00 0.00 0.00 4.79
4010 5828 1.228956 ACGCACACACTACCCCCTA 60.229 57.895 0.00 0.00 0.00 3.53
4011 5829 0.616679 ACGCACACACTACCCCCTAT 60.617 55.000 0.00 0.00 0.00 2.57
4012 5830 0.179084 CGCACACACTACCCCCTATG 60.179 60.000 0.00 0.00 0.00 2.23
4013 5831 1.200519 GCACACACTACCCCCTATGA 58.799 55.000 0.00 0.00 0.00 2.15
4014 5832 1.139058 GCACACACTACCCCCTATGAG 59.861 57.143 0.00 0.00 0.00 2.90
4015 5833 1.139058 CACACACTACCCCCTATGAGC 59.861 57.143 0.00 0.00 0.00 4.26
4016 5834 1.273609 ACACACTACCCCCTATGAGCA 60.274 52.381 0.00 0.00 0.00 4.26
4017 5835 1.139058 CACACTACCCCCTATGAGCAC 59.861 57.143 0.00 0.00 0.00 4.40
4018 5836 0.759346 CACTACCCCCTATGAGCACC 59.241 60.000 0.00 0.00 0.00 5.01
4019 5837 0.642710 ACTACCCCCTATGAGCACCT 59.357 55.000 0.00 0.00 0.00 4.00
4020 5838 1.009675 ACTACCCCCTATGAGCACCTT 59.990 52.381 0.00 0.00 0.00 3.50
4021 5839 2.127708 CTACCCCCTATGAGCACCTTT 58.872 52.381 0.00 0.00 0.00 3.11
4022 5840 0.625849 ACCCCCTATGAGCACCTTTG 59.374 55.000 0.00 0.00 0.00 2.77
4023 5841 0.918983 CCCCCTATGAGCACCTTTGA 59.081 55.000 0.00 0.00 0.00 2.69
4024 5842 1.408822 CCCCCTATGAGCACCTTTGAC 60.409 57.143 0.00 0.00 0.00 3.18
4025 5843 1.281867 CCCCTATGAGCACCTTTGACA 59.718 52.381 0.00 0.00 0.00 3.58
4026 5844 2.092212 CCCCTATGAGCACCTTTGACAT 60.092 50.000 0.00 0.00 0.00 3.06
4027 5845 3.136443 CCCCTATGAGCACCTTTGACATA 59.864 47.826 0.00 0.00 0.00 2.29
4028 5846 4.130118 CCCTATGAGCACCTTTGACATAC 58.870 47.826 0.00 0.00 0.00 2.39
4029 5847 4.141620 CCCTATGAGCACCTTTGACATACT 60.142 45.833 0.00 0.00 0.00 2.12
4030 5848 4.813161 CCTATGAGCACCTTTGACATACTG 59.187 45.833 0.00 0.00 0.00 2.74
4031 5849 4.558226 ATGAGCACCTTTGACATACTGA 57.442 40.909 0.00 0.00 0.00 3.41
4032 5850 3.930336 TGAGCACCTTTGACATACTGAG 58.070 45.455 0.00 0.00 0.00 3.35
4033 5851 3.324846 TGAGCACCTTTGACATACTGAGT 59.675 43.478 0.00 0.00 0.00 3.41
4034 5852 3.929610 GAGCACCTTTGACATACTGAGTC 59.070 47.826 0.00 0.00 36.55 3.36
4035 5853 2.668457 GCACCTTTGACATACTGAGTCG 59.332 50.000 0.00 0.00 38.83 4.18
4036 5854 3.254060 CACCTTTGACATACTGAGTCGG 58.746 50.000 0.00 0.00 38.83 4.79
4037 5855 2.271800 CCTTTGACATACTGAGTCGGC 58.728 52.381 0.00 0.00 38.83 5.54
4038 5856 2.353704 CCTTTGACATACTGAGTCGGCA 60.354 50.000 0.00 0.00 38.83 5.69
4039 5857 3.525537 CTTTGACATACTGAGTCGGCAT 58.474 45.455 0.00 0.00 38.83 4.40
4040 5858 4.441495 CCTTTGACATACTGAGTCGGCATA 60.441 45.833 0.00 0.00 38.83 3.14
4041 5859 4.729227 TTGACATACTGAGTCGGCATAA 57.271 40.909 0.00 0.00 38.83 1.90
4042 5860 4.041740 TGACATACTGAGTCGGCATAAC 57.958 45.455 0.00 0.00 38.83 1.89
4043 5861 3.445805 TGACATACTGAGTCGGCATAACA 59.554 43.478 0.00 0.00 38.83 2.41
4044 5862 4.099419 TGACATACTGAGTCGGCATAACAT 59.901 41.667 0.00 0.00 38.83 2.71
4045 5863 4.621991 ACATACTGAGTCGGCATAACATC 58.378 43.478 0.00 0.00 0.00 3.06
4046 5864 4.342378 ACATACTGAGTCGGCATAACATCT 59.658 41.667 0.00 0.00 0.00 2.90
4047 5865 3.895232 ACTGAGTCGGCATAACATCTT 57.105 42.857 0.00 0.00 0.00 2.40
4048 5866 3.525537 ACTGAGTCGGCATAACATCTTG 58.474 45.455 0.00 0.00 0.00 3.02
4049 5867 3.195610 ACTGAGTCGGCATAACATCTTGA 59.804 43.478 0.00 0.00 0.00 3.02
4050 5868 3.785486 TGAGTCGGCATAACATCTTGAG 58.215 45.455 0.00 0.00 0.00 3.02
4051 5869 3.447229 TGAGTCGGCATAACATCTTGAGA 59.553 43.478 0.00 0.00 0.00 3.27
4052 5870 4.100035 TGAGTCGGCATAACATCTTGAGAT 59.900 41.667 0.00 0.00 34.56 2.75
4053 5871 5.028549 AGTCGGCATAACATCTTGAGATT 57.971 39.130 0.00 0.00 31.21 2.40
4054 5872 4.813161 AGTCGGCATAACATCTTGAGATTG 59.187 41.667 0.00 0.00 31.21 2.67
4055 5873 4.811024 GTCGGCATAACATCTTGAGATTGA 59.189 41.667 0.00 0.00 31.21 2.57
4056 5874 5.468072 GTCGGCATAACATCTTGAGATTGAT 59.532 40.000 0.00 0.00 31.21 2.57
4057 5875 5.467735 TCGGCATAACATCTTGAGATTGATG 59.532 40.000 0.00 0.00 43.90 3.07
4058 5876 5.467735 CGGCATAACATCTTGAGATTGATGA 59.532 40.000 9.54 0.00 41.69 2.92
4059 5877 6.017687 CGGCATAACATCTTGAGATTGATGAA 60.018 38.462 9.54 0.00 41.69 2.57
4060 5878 7.361127 GGCATAACATCTTGAGATTGATGAAG 58.639 38.462 9.54 0.00 41.69 3.02
4061 5879 7.013083 GGCATAACATCTTGAGATTGATGAAGT 59.987 37.037 9.54 0.00 41.69 3.01
4062 5880 8.068977 GCATAACATCTTGAGATTGATGAAGTC 58.931 37.037 9.54 0.00 41.69 3.01
4063 5881 6.659361 AACATCTTGAGATTGATGAAGTCG 57.341 37.500 9.54 0.00 41.69 4.18
4064 5882 4.569966 ACATCTTGAGATTGATGAAGTCGC 59.430 41.667 9.54 0.00 41.69 5.19
4065 5883 3.525537 TCTTGAGATTGATGAAGTCGCC 58.474 45.455 0.00 0.00 0.00 5.54
4066 5884 3.055891 TCTTGAGATTGATGAAGTCGCCA 60.056 43.478 0.00 0.00 0.00 5.69
4067 5885 3.548745 TGAGATTGATGAAGTCGCCAT 57.451 42.857 0.00 0.00 0.00 4.40
4068 5886 4.670896 TGAGATTGATGAAGTCGCCATA 57.329 40.909 0.00 0.00 0.00 2.74
4069 5887 4.625028 TGAGATTGATGAAGTCGCCATAG 58.375 43.478 0.00 0.00 0.00 2.23
4070 5888 4.342092 TGAGATTGATGAAGTCGCCATAGA 59.658 41.667 0.00 0.00 0.00 1.98
4071 5889 5.011431 TGAGATTGATGAAGTCGCCATAGAT 59.989 40.000 0.00 0.00 0.00 1.98
4072 5890 5.236282 AGATTGATGAAGTCGCCATAGATG 58.764 41.667 0.00 0.00 0.00 2.90
4073 5891 4.670896 TTGATGAAGTCGCCATAGATGA 57.329 40.909 0.00 0.00 0.00 2.92
4074 5892 3.982475 TGATGAAGTCGCCATAGATGAC 58.018 45.455 0.00 0.00 0.00 3.06
4075 5893 3.638627 TGATGAAGTCGCCATAGATGACT 59.361 43.478 0.00 0.00 44.46 3.41
4076 5894 3.717400 TGAAGTCGCCATAGATGACTC 57.283 47.619 0.00 0.00 41.88 3.36
4077 5895 2.033424 TGAAGTCGCCATAGATGACTCG 59.967 50.000 0.00 0.00 41.88 4.18
4078 5896 1.681538 AGTCGCCATAGATGACTCGT 58.318 50.000 0.00 0.00 38.55 4.18
4079 5897 2.847441 AGTCGCCATAGATGACTCGTA 58.153 47.619 0.00 0.00 38.55 3.43
4080 5898 2.809119 AGTCGCCATAGATGACTCGTAG 59.191 50.000 0.00 0.00 38.55 3.51
4081 5899 2.548904 GTCGCCATAGATGACTCGTAGT 59.451 50.000 0.00 0.00 0.00 2.73
4082 5900 2.806818 TCGCCATAGATGACTCGTAGTC 59.193 50.000 7.74 7.74 45.26 2.59
4096 5914 2.471862 GTAGTCGACGGGAACATCTC 57.528 55.000 10.46 0.00 0.00 2.75
4097 5915 1.065251 GTAGTCGACGGGAACATCTCC 59.935 57.143 10.46 0.00 44.54 3.71
4098 5916 0.323542 AGTCGACGGGAACATCTCCT 60.324 55.000 10.46 0.00 44.68 3.69
4099 5917 0.100861 GTCGACGGGAACATCTCCTC 59.899 60.000 0.00 0.00 44.68 3.71
4100 5918 1.035932 TCGACGGGAACATCTCCTCC 61.036 60.000 0.00 0.00 44.68 4.30
4101 5919 1.038130 CGACGGGAACATCTCCTCCT 61.038 60.000 0.00 0.00 44.68 3.69
4102 5920 1.749635 CGACGGGAACATCTCCTCCTA 60.750 57.143 0.00 0.00 44.68 2.94
4103 5921 1.682323 GACGGGAACATCTCCTCCTAC 59.318 57.143 0.00 0.00 44.68 3.18
4104 5922 1.288335 ACGGGAACATCTCCTCCTACT 59.712 52.381 0.00 0.00 44.68 2.57
4105 5923 1.683917 CGGGAACATCTCCTCCTACTG 59.316 57.143 0.00 0.00 44.68 2.74
4106 5924 2.687014 CGGGAACATCTCCTCCTACTGA 60.687 54.545 0.00 0.00 44.68 3.41
4107 5925 3.375699 GGGAACATCTCCTCCTACTGAA 58.624 50.000 0.00 0.00 44.68 3.02
4108 5926 3.133183 GGGAACATCTCCTCCTACTGAAC 59.867 52.174 0.00 0.00 44.68 3.18
4109 5927 3.181485 GGAACATCTCCTCCTACTGAACG 60.181 52.174 0.00 0.00 41.61 3.95
4110 5928 3.367646 ACATCTCCTCCTACTGAACGA 57.632 47.619 0.00 0.00 0.00 3.85
4111 5929 3.698289 ACATCTCCTCCTACTGAACGAA 58.302 45.455 0.00 0.00 0.00 3.85
4112 5930 4.087182 ACATCTCCTCCTACTGAACGAAA 58.913 43.478 0.00 0.00 0.00 3.46
4113 5931 4.082136 ACATCTCCTCCTACTGAACGAAAC 60.082 45.833 0.00 0.00 0.00 2.78
4114 5932 3.764218 TCTCCTCCTACTGAACGAAACT 58.236 45.455 0.00 0.00 0.00 2.66
4115 5933 4.914983 TCTCCTCCTACTGAACGAAACTA 58.085 43.478 0.00 0.00 0.00 2.24
4116 5934 5.507637 TCTCCTCCTACTGAACGAAACTAT 58.492 41.667 0.00 0.00 0.00 2.12
4117 5935 6.656902 TCTCCTCCTACTGAACGAAACTATA 58.343 40.000 0.00 0.00 0.00 1.31
4118 5936 7.114754 TCTCCTCCTACTGAACGAAACTATAA 58.885 38.462 0.00 0.00 0.00 0.98
4119 5937 7.613022 TCTCCTCCTACTGAACGAAACTATAAA 59.387 37.037 0.00 0.00 0.00 1.40
4120 5938 8.125978 TCCTCCTACTGAACGAAACTATAAAA 57.874 34.615 0.00 0.00 0.00 1.52
4121 5939 8.587608 TCCTCCTACTGAACGAAACTATAAAAA 58.412 33.333 0.00 0.00 0.00 1.94
4158 5976 2.303163 AAAAACTTTGGCCGTTGTCC 57.697 45.000 0.00 0.00 0.00 4.02
4159 5977 1.187087 AAAACTTTGGCCGTTGTCCA 58.813 45.000 0.00 0.00 0.00 4.02
4160 5978 0.458260 AAACTTTGGCCGTTGTCCAC 59.542 50.000 0.00 0.00 32.45 4.02
4161 5979 1.388837 AACTTTGGCCGTTGTCCACC 61.389 55.000 0.00 0.00 32.45 4.61
4162 5980 1.826054 CTTTGGCCGTTGTCCACCA 60.826 57.895 0.00 0.00 32.45 4.17
4163 5981 1.379977 TTTGGCCGTTGTCCACCAA 60.380 52.632 0.00 0.00 40.34 3.67
4164 5982 0.970937 TTTGGCCGTTGTCCACCAAA 60.971 50.000 0.00 2.06 46.96 3.28
4165 5983 1.668101 TTGGCCGTTGTCCACCAAAC 61.668 55.000 0.00 0.00 39.17 2.93
4166 5984 2.122167 GGCCGTTGTCCACCAAACA 61.122 57.895 0.00 0.00 34.07 2.83
4167 5985 1.460273 GGCCGTTGTCCACCAAACAT 61.460 55.000 0.00 0.00 34.07 2.71
4168 5986 0.387565 GCCGTTGTCCACCAAACATT 59.612 50.000 0.00 0.00 34.07 2.71
4169 5987 1.867698 GCCGTTGTCCACCAAACATTG 60.868 52.381 0.00 0.00 34.07 2.82
4170 5988 1.678627 CCGTTGTCCACCAAACATTGA 59.321 47.619 0.00 0.00 34.07 2.57
4171 5989 2.542824 CCGTTGTCCACCAAACATTGAC 60.543 50.000 0.00 0.00 34.07 3.18
4172 5990 2.357637 CGTTGTCCACCAAACATTGACT 59.642 45.455 0.00 0.00 34.07 3.41
4173 5991 3.562141 CGTTGTCCACCAAACATTGACTA 59.438 43.478 0.00 0.00 34.07 2.59
4174 5992 4.215399 CGTTGTCCACCAAACATTGACTAT 59.785 41.667 0.00 0.00 34.07 2.12
4175 5993 5.278266 CGTTGTCCACCAAACATTGACTATT 60.278 40.000 0.00 0.00 34.07 1.73
4176 5994 5.703978 TGTCCACCAAACATTGACTATTG 57.296 39.130 0.00 0.00 0.00 1.90
4177 5995 5.380900 TGTCCACCAAACATTGACTATTGA 58.619 37.500 0.00 0.00 0.00 2.57
4178 5996 5.240623 TGTCCACCAAACATTGACTATTGAC 59.759 40.000 0.00 0.00 0.00 3.18
4179 5997 5.473504 GTCCACCAAACATTGACTATTGACT 59.526 40.000 0.00 0.00 0.00 3.41
4180 5998 6.016276 GTCCACCAAACATTGACTATTGACTT 60.016 38.462 0.00 0.00 0.00 3.01
4181 5999 6.549364 TCCACCAAACATTGACTATTGACTTT 59.451 34.615 0.00 0.00 0.00 2.66
4182 6000 7.721842 TCCACCAAACATTGACTATTGACTTTA 59.278 33.333 0.00 0.00 0.00 1.85
4183 6001 8.356657 CCACCAAACATTGACTATTGACTTTAA 58.643 33.333 0.00 0.00 0.00 1.52
4184 6002 9.743057 CACCAAACATTGACTATTGACTTTAAA 57.257 29.630 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.356278 TGCCCATGCAGAGAACCC 59.644 61.111 0.00 0.00 44.23 4.11
13 14 4.686191 TCAAAACTGTGAATTTGCCCAT 57.314 36.364 0.00 0.00 36.66 4.00
27 28 9.893305 CTAAACTAACGGAAAATGATCAAAACT 57.107 29.630 0.00 0.00 0.00 2.66
29 30 8.353684 TGCTAAACTAACGGAAAATGATCAAAA 58.646 29.630 0.00 0.00 0.00 2.44
32 33 7.624360 ATGCTAAACTAACGGAAAATGATCA 57.376 32.000 0.00 0.00 0.00 2.92
84 85 5.238583 ACAGTAGAAAAAGGGTCAGATTCG 58.761 41.667 0.00 0.00 0.00 3.34
89 90 5.765182 ACAATGACAGTAGAAAAAGGGTCAG 59.235 40.000 0.00 0.00 38.50 3.51
93 94 7.224557 CCAAAAACAATGACAGTAGAAAAAGGG 59.775 37.037 0.00 0.00 0.00 3.95
101 102 3.004315 ACCGCCAAAAACAATGACAGTAG 59.996 43.478 0.00 0.00 0.00 2.57
105 106 2.287909 GCTACCGCCAAAAACAATGACA 60.288 45.455 0.00 0.00 0.00 3.58
108 109 2.058057 GTGCTACCGCCAAAAACAATG 58.942 47.619 0.00 0.00 34.43 2.82
114 116 1.525941 GGTAAGTGCTACCGCCAAAA 58.474 50.000 0.00 0.00 40.92 2.44
159 164 2.748388 AGACTATGGCGGTAAGGTCTT 58.252 47.619 0.00 0.00 31.14 3.01
186 191 7.814693 ATAGCAATAGGGTAACACATCCTAT 57.185 36.000 0.00 0.00 43.49 2.57
204 209 3.257375 CCTACCGCCATACACTATAGCAA 59.743 47.826 0.00 0.00 0.00 3.91
208 213 3.074985 AGACCCTACCGCCATACACTATA 59.925 47.826 0.00 0.00 0.00 1.31
214 219 1.411041 AGAAGACCCTACCGCCATAC 58.589 55.000 0.00 0.00 0.00 2.39
219 224 2.289506 ACAAAGAAGAAGACCCTACCGC 60.290 50.000 0.00 0.00 0.00 5.68
221 226 7.997773 ATAAAACAAAGAAGAAGACCCTACC 57.002 36.000 0.00 0.00 0.00 3.18
227 232 7.169645 TGCATGCAATAAAACAAAGAAGAAGAC 59.830 33.333 20.30 0.00 0.00 3.01
228 233 7.208777 TGCATGCAATAAAACAAAGAAGAAGA 58.791 30.769 20.30 0.00 0.00 2.87
229 234 7.410800 TGCATGCAATAAAACAAAGAAGAAG 57.589 32.000 20.30 0.00 0.00 2.85
230 235 7.518689 GCTTGCATGCAATAAAACAAAGAAGAA 60.519 33.333 31.96 5.09 35.20 2.52
251 256 6.981379 CATGCAGTTATAATAAGTGCTTGC 57.019 37.500 15.11 7.99 44.60 4.01
257 262 5.236478 GGACGTGCATGCAGTTATAATAAGT 59.764 40.000 23.41 3.69 0.00 2.24
277 284 1.447314 GTCTTTGGCGGTAGGGACG 60.447 63.158 0.00 0.00 0.00 4.79
279 286 0.912487 ATGGTCTTTGGCGGTAGGGA 60.912 55.000 0.00 0.00 0.00 4.20
295 302 7.664318 GGTATGAAAAATACCCTACCACTATGG 59.336 40.741 3.55 0.00 39.75 2.74
318 326 1.376166 CGGTCACGCCCATTTGGTA 60.376 57.895 0.00 0.00 36.04 3.25
325 333 1.177895 TACTTACACGGTCACGCCCA 61.178 55.000 0.00 0.00 46.04 5.36
328 336 1.981533 GACTTACTTACACGGTCACGC 59.018 52.381 0.00 0.00 46.04 5.34
335 343 2.478539 GGCGGTAGGACTTACTTACACG 60.479 54.545 0.00 0.00 33.54 4.49
348 356 1.804748 GTCAAAGTCTTTGGCGGTAGG 59.195 52.381 22.23 0.00 40.98 3.18
355 363 5.063944 CACATCCTATCGTCAAAGTCTTTGG 59.936 44.000 22.23 9.73 40.98 3.28
367 375 2.383442 AGGGTAGCACATCCTATCGT 57.617 50.000 0.00 0.00 0.00 3.73
370 378 4.153411 GTCAGTAGGGTAGCACATCCTAT 58.847 47.826 1.07 0.00 35.82 2.57
375 383 4.634012 TTTTGTCAGTAGGGTAGCACAT 57.366 40.909 0.00 0.00 0.00 3.21
398 406 9.753674 AATCTGACCCTTTTTCTATTGTCATTA 57.246 29.630 0.00 0.00 32.83 1.90
404 412 9.762933 TTTTCAAATCTGACCCTTTTTCTATTG 57.237 29.630 0.00 0.00 0.00 1.90
409 417 8.492673 AAGTTTTTCAAATCTGACCCTTTTTC 57.507 30.769 0.00 0.00 0.00 2.29
416 424 8.696410 TGTGTAAAAGTTTTTCAAATCTGACC 57.304 30.769 6.10 0.00 0.00 4.02
472 480 3.431486 GGCAATTTCACTGTTTTGACCCA 60.431 43.478 0.00 0.00 0.00 4.51
484 492 0.109597 CGCAGACAGGGCAATTTCAC 60.110 55.000 0.00 0.00 0.00 3.18
489 497 1.904287 TAAAACGCAGACAGGGCAAT 58.096 45.000 0.00 0.00 0.00 3.56
495 503 1.398390 GCCTGGATAAAACGCAGACAG 59.602 52.381 0.00 0.00 0.00 3.51
524 532 1.672881 GCCTATGACTCATGGTTGTGC 59.327 52.381 1.42 0.00 0.00 4.57
527 535 2.569059 CAGGCCTATGACTCATGGTTG 58.431 52.381 3.98 0.00 0.00 3.77
528 536 1.133976 GCAGGCCTATGACTCATGGTT 60.134 52.381 3.98 0.00 0.00 3.67
529 537 0.471617 GCAGGCCTATGACTCATGGT 59.528 55.000 3.98 0.00 0.00 3.55
530 538 0.250640 GGCAGGCCTATGACTCATGG 60.251 60.000 3.98 0.00 0.00 3.66
531 539 0.602106 CGGCAGGCCTATGACTCATG 60.602 60.000 3.98 0.00 0.00 3.07
532 540 1.750930 CGGCAGGCCTATGACTCAT 59.249 57.895 3.98 0.00 0.00 2.90
533 541 2.434843 CCGGCAGGCCTATGACTCA 61.435 63.158 3.98 0.00 0.00 3.41
534 542 2.423446 CCGGCAGGCCTATGACTC 59.577 66.667 3.98 0.00 0.00 3.36
563 571 3.254892 GCCCTTTCTCTTGTCTTCTACG 58.745 50.000 0.00 0.00 0.00 3.51
587 595 0.035439 AAACTGGTGGCAGTATCCCG 60.035 55.000 0.00 0.00 34.56 5.14
617 625 6.662414 TGAATAAAGAAACTATGCCACTCG 57.338 37.500 0.00 0.00 0.00 4.18
629 637 9.859427 GGATGTTGTGATGATTGAATAAAGAAA 57.141 29.630 0.00 0.00 0.00 2.52
641 649 5.573219 TCTTCCTTTGGATGTTGTGATGAT 58.427 37.500 0.00 0.00 0.00 2.45
642 650 4.984295 TCTTCCTTTGGATGTTGTGATGA 58.016 39.130 0.00 0.00 0.00 2.92
643 651 5.909621 ATCTTCCTTTGGATGTTGTGATG 57.090 39.130 0.00 0.00 0.00 3.07
682 690 8.352201 CAAAAGACAAAATGATCACTAGGTTCA 58.648 33.333 0.00 0.00 0.00 3.18
746 754 6.469782 TGATACACTGAAGAGACATGCATA 57.530 37.500 0.00 0.00 0.00 3.14
761 776 2.095364 GTCACGGACGACTTGATACACT 60.095 50.000 0.00 0.00 32.92 3.55
903 924 7.770897 ACAAAGAACATGGAGATAGATGTTACC 59.229 37.037 0.00 0.00 41.74 2.85
905 926 7.987458 GGACAAAGAACATGGAGATAGATGTTA 59.013 37.037 0.00 0.00 41.74 2.41
967 988 4.503296 CGTAGGCAGGCTGGAATTTATAGT 60.503 45.833 17.64 0.00 0.00 2.12
983 1004 3.056179 TGAGTTGTGAATGATCGTAGGCA 60.056 43.478 0.00 0.00 0.00 4.75
1030 1051 1.063867 GGAGTGGAGTGAGCTAGGGTA 60.064 57.143 0.00 0.00 0.00 3.69
1041 1062 0.532573 CATAGTGTGCGGAGTGGAGT 59.467 55.000 0.00 0.00 0.00 3.85
1059 1080 0.106868 CATCAGGGCCATGCTCTTCA 60.107 55.000 13.87 0.00 34.72 3.02
1061 1082 0.106819 GTCATCAGGGCCATGCTCTT 60.107 55.000 13.87 0.00 34.72 2.85
1072 1093 2.765807 AGGAGGCGGGTCATCAGG 60.766 66.667 0.00 0.00 0.00 3.86
1091 1112 1.444553 CAGTGCCGAGAAGGACGAC 60.445 63.158 0.00 0.00 45.00 4.34
1105 1126 2.749044 AGGAGCGGCAATGCAGTG 60.749 61.111 10.38 10.38 37.31 3.66
1106 1127 2.437359 GAGGAGCGGCAATGCAGT 60.437 61.111 7.79 0.00 37.31 4.40
1120 1141 0.540923 CTGCAGGGGAGAAGAAGAGG 59.459 60.000 5.57 0.00 0.00 3.69
1147 1168 1.726791 CACATCTCCAAAACGTCTCCG 59.273 52.381 0.00 0.00 40.83 4.63
1183 1219 4.260620 GCAACAAACGTCAGTCACACTATT 60.261 41.667 0.00 0.00 0.00 1.73
1185 1221 2.605818 GCAACAAACGTCAGTCACACTA 59.394 45.455 0.00 0.00 0.00 2.74
1186 1222 1.396996 GCAACAAACGTCAGTCACACT 59.603 47.619 0.00 0.00 0.00 3.55
1187 1223 1.396996 AGCAACAAACGTCAGTCACAC 59.603 47.619 0.00 0.00 0.00 3.82
1188 1224 1.732941 AGCAACAAACGTCAGTCACA 58.267 45.000 0.00 0.00 0.00 3.58
1298 1347 3.554752 CCATGGTGATGCCGTTTTTCTTT 60.555 43.478 2.57 0.00 41.21 2.52
1373 1422 2.171237 CAGCTCCACCATCACCTTGATA 59.829 50.000 0.00 0.00 34.28 2.15
1384 1433 2.099652 CTCGTTGGTCAGCTCCACCA 62.100 60.000 9.66 9.66 42.48 4.17
1457 1506 0.396811 AGTAGGCCTTCACGTTGCTT 59.603 50.000 12.58 0.00 0.00 3.91
2817 2869 0.539669 AACTTACTTGGTGCCTGCCC 60.540 55.000 0.00 0.00 0.00 5.36
2863 2919 8.859156 CGTTCATTTTCTTTTCTTGAAAGTTGA 58.141 29.630 0.00 0.00 44.17 3.18
2864 2920 8.647226 ACGTTCATTTTCTTTTCTTGAAAGTTG 58.353 29.630 0.00 0.00 44.17 3.16
2865 2921 8.757164 ACGTTCATTTTCTTTTCTTGAAAGTT 57.243 26.923 0.00 0.00 44.17 2.66
2866 2922 8.757164 AACGTTCATTTTCTTTTCTTGAAAGT 57.243 26.923 0.00 0.00 44.17 2.66
2902 2959 5.458041 AAGAGTGGAACAAAATCACCATG 57.542 39.130 0.00 0.00 44.16 3.66
2986 3073 3.955650 TCTCGTAGGTAGCAAAGCTTT 57.044 42.857 5.69 5.69 40.44 3.51
3172 3269 3.363970 CCATGACAGTTTACAGCGTTGAC 60.364 47.826 6.16 0.00 0.00 3.18
3261 3358 6.457528 GGCGAGGAAGTCTCAAAAATAAGATG 60.458 42.308 0.00 0.00 42.55 2.90
3267 3364 2.076863 CGGCGAGGAAGTCTCAAAAAT 58.923 47.619 0.00 0.00 42.55 1.82
3280 3377 2.896168 TGTAAATAAAGTCCGGCGAGG 58.104 47.619 9.30 0.00 42.97 4.63
3342 3440 1.369692 CACCGTGTCTGGTTAGGCA 59.630 57.895 0.00 0.00 41.38 4.75
3359 3457 2.515996 CTTTCGCTCGGGTTAGGCCA 62.516 60.000 5.01 0.00 39.65 5.36
3363 3461 0.669318 TGCACTTTCGCTCGGGTTAG 60.669 55.000 0.00 0.00 0.00 2.34
3391 3489 6.409524 TTGAATTTTGAGGCTCACAATCTT 57.590 33.333 24.65 13.96 27.67 2.40
3405 3503 6.810182 CCATGAGTTTAGGAGCTTGAATTTTG 59.190 38.462 0.00 0.00 0.00 2.44
3411 3509 2.356125 GCCCATGAGTTTAGGAGCTTGA 60.356 50.000 0.00 0.00 0.00 3.02
3413 3511 1.635487 TGCCCATGAGTTTAGGAGCTT 59.365 47.619 0.00 0.00 0.00 3.74
3488 3586 9.693739 AGGTATTATAGAGAGATCGAATCATGT 57.306 33.333 0.00 0.00 0.00 3.21
3493 3591 9.693739 ATGTGAGGTATTATAGAGAGATCGAAT 57.306 33.333 0.00 0.00 0.00 3.34
3496 3594 8.731275 AGATGTGAGGTATTATAGAGAGATCG 57.269 38.462 0.00 0.00 0.00 3.69
3646 3746 4.021925 AGGAGGCCACAACCGCTC 62.022 66.667 5.01 0.00 33.69 5.03
3657 3757 0.613012 ATCCTTTGTTGGCAGGAGGC 60.613 55.000 0.00 0.00 42.68 4.70
3658 3758 1.180029 CATCCTTTGTTGGCAGGAGG 58.820 55.000 0.00 0.74 42.68 4.30
3659 3759 1.180029 CCATCCTTTGTTGGCAGGAG 58.820 55.000 0.00 0.00 42.68 3.69
3660 3760 3.362040 CCATCCTTTGTTGGCAGGA 57.638 52.632 0.00 0.00 43.59 3.86
3665 3765 0.609662 CTTGGGCCATCCTTTGTTGG 59.390 55.000 7.26 0.00 36.20 3.77
3666 3766 0.037046 GCTTGGGCCATCCTTTGTTG 60.037 55.000 7.26 0.00 36.20 3.33
3667 3767 1.535204 CGCTTGGGCCATCCTTTGTT 61.535 55.000 7.26 0.00 36.20 2.83
3668 3768 1.978617 CGCTTGGGCCATCCTTTGT 60.979 57.895 7.26 0.00 36.20 2.83
3669 3769 2.713967 CCGCTTGGGCCATCCTTTG 61.714 63.158 7.26 0.00 36.20 2.77
3670 3770 2.362889 CCGCTTGGGCCATCCTTT 60.363 61.111 7.26 0.00 36.20 3.11
3671 3771 3.338250 TCCGCTTGGGCCATCCTT 61.338 61.111 7.26 0.00 36.20 3.36
3672 3772 3.801997 CTCCGCTTGGGCCATCCT 61.802 66.667 7.26 0.00 36.20 3.24
3679 3779 4.899239 CTAGCCGCTCCGCTTGGG 62.899 72.222 0.00 0.00 40.39 4.12
3759 5576 3.215244 CGAGTGCGTGTACATTTGTTTC 58.785 45.455 0.00 0.00 0.00 2.78
3865 5683 4.357325 AGTGAGAGATGTAGGGTGTTGAT 58.643 43.478 0.00 0.00 0.00 2.57
3924 5742 7.168972 CGGCTTCAATTGTAGAATGTTCAAAAA 59.831 33.333 15.52 0.00 0.00 1.94
3925 5743 6.640499 CGGCTTCAATTGTAGAATGTTCAAAA 59.360 34.615 15.52 0.00 0.00 2.44
3926 5744 6.148948 CGGCTTCAATTGTAGAATGTTCAAA 58.851 36.000 15.52 0.00 0.00 2.69
3927 5745 5.698832 CGGCTTCAATTGTAGAATGTTCAA 58.301 37.500 15.52 0.00 0.00 2.69
3928 5746 4.379394 GCGGCTTCAATTGTAGAATGTTCA 60.379 41.667 15.52 0.00 0.00 3.18
3929 5747 4.098416 GCGGCTTCAATTGTAGAATGTTC 58.902 43.478 15.52 0.00 0.00 3.18
3930 5748 3.758554 AGCGGCTTCAATTGTAGAATGTT 59.241 39.130 15.52 0.32 0.00 2.71
3931 5749 3.347216 AGCGGCTTCAATTGTAGAATGT 58.653 40.909 15.52 0.00 0.00 2.71
3932 5750 3.374988 TGAGCGGCTTCAATTGTAGAATG 59.625 43.478 15.52 5.50 0.00 2.67
3933 5751 3.375299 GTGAGCGGCTTCAATTGTAGAAT 59.625 43.478 15.52 0.00 0.00 2.40
3934 5752 2.742053 GTGAGCGGCTTCAATTGTAGAA 59.258 45.455 15.52 0.00 0.00 2.10
3935 5753 2.346803 GTGAGCGGCTTCAATTGTAGA 58.653 47.619 15.52 0.00 0.00 2.59
3936 5754 1.061131 CGTGAGCGGCTTCAATTGTAG 59.939 52.381 2.97 7.66 0.00 2.74
3937 5755 1.075542 CGTGAGCGGCTTCAATTGTA 58.924 50.000 2.97 0.00 0.00 2.41
3938 5756 0.884704 ACGTGAGCGGCTTCAATTGT 60.885 50.000 2.97 1.47 43.45 2.71
3939 5757 1.075542 TACGTGAGCGGCTTCAATTG 58.924 50.000 2.97 0.00 43.45 2.32
3940 5758 2.024176 ATACGTGAGCGGCTTCAATT 57.976 45.000 2.97 0.00 43.45 2.32
3941 5759 2.159156 TGTATACGTGAGCGGCTTCAAT 60.159 45.455 2.97 0.00 43.45 2.57
3942 5760 1.202817 TGTATACGTGAGCGGCTTCAA 59.797 47.619 2.97 0.00 43.45 2.69
3943 5761 0.812549 TGTATACGTGAGCGGCTTCA 59.187 50.000 2.97 0.63 43.45 3.02
3944 5762 1.852895 CTTGTATACGTGAGCGGCTTC 59.147 52.381 2.97 0.00 43.45 3.86
3945 5763 1.922570 CTTGTATACGTGAGCGGCTT 58.077 50.000 2.97 0.00 43.45 4.35
3946 5764 0.527817 GCTTGTATACGTGAGCGGCT 60.528 55.000 0.00 0.00 43.45 5.52
3947 5765 0.804544 TGCTTGTATACGTGAGCGGC 60.805 55.000 16.16 0.00 43.45 6.53
3948 5766 1.852942 ATGCTTGTATACGTGAGCGG 58.147 50.000 16.16 0.00 43.45 5.52
3949 5767 3.179795 GTGTATGCTTGTATACGTGAGCG 59.820 47.826 16.16 0.00 44.93 5.03
3950 5768 3.489785 GGTGTATGCTTGTATACGTGAGC 59.510 47.826 15.04 15.04 36.54 4.26
3951 5769 4.049186 GGGTGTATGCTTGTATACGTGAG 58.951 47.826 0.00 0.00 36.54 3.51
3952 5770 3.447944 TGGGTGTATGCTTGTATACGTGA 59.552 43.478 0.00 0.00 36.54 4.35
3953 5771 3.787785 TGGGTGTATGCTTGTATACGTG 58.212 45.455 0.00 0.00 36.54 4.49
3954 5772 4.344102 AGATGGGTGTATGCTTGTATACGT 59.656 41.667 0.00 0.00 36.54 3.57
3955 5773 4.883083 AGATGGGTGTATGCTTGTATACG 58.117 43.478 0.00 0.00 36.54 3.06
3956 5774 8.721478 CATAAAGATGGGTGTATGCTTGTATAC 58.279 37.037 0.00 0.00 34.78 1.47
3957 5775 8.655901 TCATAAAGATGGGTGTATGCTTGTATA 58.344 33.333 0.00 0.00 33.49 1.47
3958 5776 7.517320 TCATAAAGATGGGTGTATGCTTGTAT 58.483 34.615 0.00 0.00 33.49 2.29
3959 5777 6.894682 TCATAAAGATGGGTGTATGCTTGTA 58.105 36.000 0.00 0.00 33.49 2.41
3960 5778 5.754782 TCATAAAGATGGGTGTATGCTTGT 58.245 37.500 0.00 0.00 33.49 3.16
3961 5779 6.095300 TGTTCATAAAGATGGGTGTATGCTTG 59.905 38.462 0.00 0.00 33.49 4.01
3962 5780 6.095440 GTGTTCATAAAGATGGGTGTATGCTT 59.905 38.462 0.00 0.00 33.49 3.91
3963 5781 5.590259 GTGTTCATAAAGATGGGTGTATGCT 59.410 40.000 0.00 0.00 33.49 3.79
3964 5782 5.356751 TGTGTTCATAAAGATGGGTGTATGC 59.643 40.000 0.00 0.00 33.49 3.14
3965 5783 7.420002 CATGTGTTCATAAAGATGGGTGTATG 58.580 38.462 0.00 0.00 33.49 2.39
3966 5784 6.039717 GCATGTGTTCATAAAGATGGGTGTAT 59.960 38.462 0.00 0.00 33.49 2.29
3967 5785 5.356751 GCATGTGTTCATAAAGATGGGTGTA 59.643 40.000 0.00 0.00 33.49 2.90
3968 5786 4.158394 GCATGTGTTCATAAAGATGGGTGT 59.842 41.667 0.00 0.00 33.49 4.16
3969 5787 4.158209 TGCATGTGTTCATAAAGATGGGTG 59.842 41.667 0.00 0.00 33.49 4.61
3970 5788 4.158394 GTGCATGTGTTCATAAAGATGGGT 59.842 41.667 0.00 0.00 33.49 4.51
3971 5789 4.675510 GTGCATGTGTTCATAAAGATGGG 58.324 43.478 0.00 0.00 33.49 4.00
3972 5790 4.345288 CGTGCATGTGTTCATAAAGATGG 58.655 43.478 0.00 0.00 33.49 3.51
3973 5791 3.787634 GCGTGCATGTGTTCATAAAGATG 59.212 43.478 7.93 0.00 32.47 2.90
3974 5792 3.439825 TGCGTGCATGTGTTCATAAAGAT 59.560 39.130 7.93 0.00 32.47 2.40
3975 5793 2.810852 TGCGTGCATGTGTTCATAAAGA 59.189 40.909 7.93 0.00 32.47 2.52
3976 5794 2.910482 GTGCGTGCATGTGTTCATAAAG 59.090 45.455 7.93 0.00 32.47 1.85
3977 5795 2.291741 TGTGCGTGCATGTGTTCATAAA 59.708 40.909 7.93 0.00 32.47 1.40
3978 5796 1.876156 TGTGCGTGCATGTGTTCATAA 59.124 42.857 7.93 0.00 32.47 1.90
3979 5797 1.196581 GTGTGCGTGCATGTGTTCATA 59.803 47.619 7.93 0.00 32.47 2.15
3980 5798 0.040157 GTGTGCGTGCATGTGTTCAT 60.040 50.000 7.93 0.00 34.21 2.57
3981 5799 1.354858 GTGTGCGTGCATGTGTTCA 59.645 52.632 7.93 0.00 0.00 3.18
3982 5800 0.929824 GTGTGTGCGTGCATGTGTTC 60.930 55.000 7.93 0.00 0.00 3.18
3983 5801 1.063972 GTGTGTGCGTGCATGTGTT 59.936 52.632 7.93 0.00 0.00 3.32
3984 5802 0.531753 TAGTGTGTGCGTGCATGTGT 60.532 50.000 7.93 0.00 0.00 3.72
3985 5803 0.110688 GTAGTGTGTGCGTGCATGTG 60.111 55.000 7.93 0.00 0.00 3.21
3986 5804 1.227999 GGTAGTGTGTGCGTGCATGT 61.228 55.000 7.93 0.00 0.00 3.21
3987 5805 1.497278 GGTAGTGTGTGCGTGCATG 59.503 57.895 0.09 0.09 0.00 4.06
3988 5806 1.671054 GGGTAGTGTGTGCGTGCAT 60.671 57.895 0.00 0.00 0.00 3.96
3989 5807 2.280524 GGGTAGTGTGTGCGTGCA 60.281 61.111 0.00 0.00 0.00 4.57
3990 5808 3.047877 GGGGTAGTGTGTGCGTGC 61.048 66.667 0.00 0.00 0.00 5.34
3991 5809 1.537814 TAGGGGGTAGTGTGTGCGTG 61.538 60.000 0.00 0.00 0.00 5.34
3992 5810 0.616679 ATAGGGGGTAGTGTGTGCGT 60.617 55.000 0.00 0.00 0.00 5.24
3993 5811 0.179084 CATAGGGGGTAGTGTGTGCG 60.179 60.000 0.00 0.00 0.00 5.34
3994 5812 1.139058 CTCATAGGGGGTAGTGTGTGC 59.861 57.143 0.00 0.00 0.00 4.57
3995 5813 1.139058 GCTCATAGGGGGTAGTGTGTG 59.861 57.143 0.00 0.00 0.00 3.82
3996 5814 1.273609 TGCTCATAGGGGGTAGTGTGT 60.274 52.381 0.00 0.00 0.00 3.72
3997 5815 1.139058 GTGCTCATAGGGGGTAGTGTG 59.861 57.143 0.00 0.00 0.00 3.82
3998 5816 1.497161 GTGCTCATAGGGGGTAGTGT 58.503 55.000 0.00 0.00 0.00 3.55
3999 5817 0.759346 GGTGCTCATAGGGGGTAGTG 59.241 60.000 0.00 0.00 0.00 2.74
4000 5818 0.642710 AGGTGCTCATAGGGGGTAGT 59.357 55.000 0.00 0.00 0.00 2.73
4001 5819 1.807814 AAGGTGCTCATAGGGGGTAG 58.192 55.000 0.00 0.00 0.00 3.18
4002 5820 1.843851 CAAAGGTGCTCATAGGGGGTA 59.156 52.381 0.00 0.00 0.00 3.69
4003 5821 0.625849 CAAAGGTGCTCATAGGGGGT 59.374 55.000 0.00 0.00 0.00 4.95
4004 5822 0.918983 TCAAAGGTGCTCATAGGGGG 59.081 55.000 0.00 0.00 0.00 5.40
4005 5823 1.281867 TGTCAAAGGTGCTCATAGGGG 59.718 52.381 0.00 0.00 0.00 4.79
4006 5824 2.787473 TGTCAAAGGTGCTCATAGGG 57.213 50.000 0.00 0.00 0.00 3.53
4007 5825 4.813161 CAGTATGTCAAAGGTGCTCATAGG 59.187 45.833 0.00 0.00 0.00 2.57
4008 5826 5.664457 TCAGTATGTCAAAGGTGCTCATAG 58.336 41.667 0.00 0.00 37.40 2.23
4009 5827 5.187772 ACTCAGTATGTCAAAGGTGCTCATA 59.812 40.000 0.00 0.00 37.40 2.15
4010 5828 4.019860 ACTCAGTATGTCAAAGGTGCTCAT 60.020 41.667 0.00 0.00 37.40 2.90
4011 5829 3.324846 ACTCAGTATGTCAAAGGTGCTCA 59.675 43.478 0.00 0.00 37.40 4.26
4012 5830 3.929610 GACTCAGTATGTCAAAGGTGCTC 59.070 47.826 0.00 0.00 37.40 4.26
4013 5831 3.615110 CGACTCAGTATGTCAAAGGTGCT 60.615 47.826 0.00 0.00 37.40 4.40
4014 5832 2.668457 CGACTCAGTATGTCAAAGGTGC 59.332 50.000 0.00 0.00 37.40 5.01
4015 5833 3.254060 CCGACTCAGTATGTCAAAGGTG 58.746 50.000 0.00 0.00 37.40 4.00
4016 5834 2.353803 GCCGACTCAGTATGTCAAAGGT 60.354 50.000 0.00 0.00 37.40 3.50
4017 5835 2.271800 GCCGACTCAGTATGTCAAAGG 58.728 52.381 0.00 0.00 37.40 3.11
4018 5836 2.959516 TGCCGACTCAGTATGTCAAAG 58.040 47.619 0.00 0.00 37.40 2.77
4019 5837 3.610040 ATGCCGACTCAGTATGTCAAA 57.390 42.857 0.00 0.00 37.40 2.69
4020 5838 4.081917 TGTTATGCCGACTCAGTATGTCAA 60.082 41.667 0.00 0.00 37.40 3.18
4021 5839 3.445805 TGTTATGCCGACTCAGTATGTCA 59.554 43.478 0.00 0.00 37.40 3.58
4022 5840 4.041740 TGTTATGCCGACTCAGTATGTC 57.958 45.455 0.00 0.00 37.40 3.06
4023 5841 4.342378 AGATGTTATGCCGACTCAGTATGT 59.658 41.667 0.00 0.00 37.40 2.29
4024 5842 4.876125 AGATGTTATGCCGACTCAGTATG 58.124 43.478 0.00 0.00 37.54 2.39
4025 5843 5.069119 TCAAGATGTTATGCCGACTCAGTAT 59.931 40.000 0.00 0.00 0.00 2.12
4026 5844 4.401202 TCAAGATGTTATGCCGACTCAGTA 59.599 41.667 0.00 0.00 0.00 2.74
4027 5845 3.195610 TCAAGATGTTATGCCGACTCAGT 59.804 43.478 0.00 0.00 0.00 3.41
4028 5846 3.785486 TCAAGATGTTATGCCGACTCAG 58.215 45.455 0.00 0.00 0.00 3.35
4029 5847 3.447229 TCTCAAGATGTTATGCCGACTCA 59.553 43.478 0.00 0.00 0.00 3.41
4030 5848 4.046938 TCTCAAGATGTTATGCCGACTC 57.953 45.455 0.00 0.00 0.00 3.36
4031 5849 4.679373 ATCTCAAGATGTTATGCCGACT 57.321 40.909 0.00 0.00 32.68 4.18
4032 5850 4.811024 TCAATCTCAAGATGTTATGCCGAC 59.189 41.667 0.00 0.00 34.49 4.79
4033 5851 5.022282 TCAATCTCAAGATGTTATGCCGA 57.978 39.130 0.00 0.00 34.49 5.54
4034 5852 5.467735 TCATCAATCTCAAGATGTTATGCCG 59.532 40.000 0.00 0.00 41.74 5.69
4035 5853 6.872628 TCATCAATCTCAAGATGTTATGCC 57.127 37.500 0.00 0.00 41.74 4.40
4036 5854 7.928103 ACTTCATCAATCTCAAGATGTTATGC 58.072 34.615 0.00 0.00 41.74 3.14
4037 5855 8.274248 CGACTTCATCAATCTCAAGATGTTATG 58.726 37.037 0.00 0.00 41.74 1.90
4038 5856 7.042187 GCGACTTCATCAATCTCAAGATGTTAT 60.042 37.037 0.00 0.00 41.74 1.89
4039 5857 6.256539 GCGACTTCATCAATCTCAAGATGTTA 59.743 38.462 0.00 0.00 41.74 2.41
4040 5858 5.064452 GCGACTTCATCAATCTCAAGATGTT 59.936 40.000 0.00 0.00 41.74 2.71
4041 5859 4.569966 GCGACTTCATCAATCTCAAGATGT 59.430 41.667 0.00 0.00 41.74 3.06
4042 5860 4.025061 GGCGACTTCATCAATCTCAAGATG 60.025 45.833 0.00 0.00 42.25 2.90
4043 5861 4.125703 GGCGACTTCATCAATCTCAAGAT 58.874 43.478 0.00 0.00 36.07 2.40
4044 5862 3.055891 TGGCGACTTCATCAATCTCAAGA 60.056 43.478 0.00 0.00 0.00 3.02
4045 5863 3.264947 TGGCGACTTCATCAATCTCAAG 58.735 45.455 0.00 0.00 0.00 3.02
4046 5864 3.333029 TGGCGACTTCATCAATCTCAA 57.667 42.857 0.00 0.00 0.00 3.02
4047 5865 3.548745 ATGGCGACTTCATCAATCTCA 57.451 42.857 0.00 0.00 0.00 3.27
4048 5866 4.876125 TCTATGGCGACTTCATCAATCTC 58.124 43.478 0.00 0.00 0.00 2.75
4049 5867 4.944619 TCTATGGCGACTTCATCAATCT 57.055 40.909 0.00 0.00 0.00 2.40
4050 5868 5.119898 GTCATCTATGGCGACTTCATCAATC 59.880 44.000 0.00 0.00 0.00 2.67
4051 5869 4.993584 GTCATCTATGGCGACTTCATCAAT 59.006 41.667 0.00 0.00 0.00 2.57
4052 5870 4.100035 AGTCATCTATGGCGACTTCATCAA 59.900 41.667 0.00 0.00 36.62 2.57
4053 5871 3.638627 AGTCATCTATGGCGACTTCATCA 59.361 43.478 0.00 0.00 36.62 3.07
4054 5872 4.233789 GAGTCATCTATGGCGACTTCATC 58.766 47.826 0.00 0.00 40.04 2.92
4055 5873 3.304996 CGAGTCATCTATGGCGACTTCAT 60.305 47.826 0.00 0.00 40.04 2.57
4056 5874 2.033424 CGAGTCATCTATGGCGACTTCA 59.967 50.000 0.00 0.00 40.04 3.02
4057 5875 2.033550 ACGAGTCATCTATGGCGACTTC 59.966 50.000 0.00 0.00 40.04 3.01
4058 5876 2.025155 ACGAGTCATCTATGGCGACTT 58.975 47.619 0.00 0.00 40.04 3.01
4059 5877 1.681538 ACGAGTCATCTATGGCGACT 58.318 50.000 0.00 1.45 42.58 4.18
4060 5878 2.548904 ACTACGAGTCATCTATGGCGAC 59.451 50.000 0.00 0.00 37.51 5.19
4061 5879 2.806818 GACTACGAGTCATCTATGGCGA 59.193 50.000 9.30 0.00 44.45 5.54
4062 5880 2.411676 CGACTACGAGTCATCTATGGCG 60.412 54.545 13.14 0.00 45.30 5.69
4063 5881 2.806818 TCGACTACGAGTCATCTATGGC 59.193 50.000 13.14 0.00 45.30 4.40
4077 5895 1.065251 GGAGATGTTCCCGTCGACTAC 59.935 57.143 14.70 6.97 40.37 2.73
4078 5896 1.386533 GGAGATGTTCCCGTCGACTA 58.613 55.000 14.70 0.00 40.37 2.59
4079 5897 2.190756 GGAGATGTTCCCGTCGACT 58.809 57.895 14.70 0.00 40.37 4.18
4080 5898 4.808649 GGAGATGTTCCCGTCGAC 57.191 61.111 5.18 5.18 40.37 4.20
4088 5906 3.695060 TCGTTCAGTAGGAGGAGATGTTC 59.305 47.826 0.00 0.00 0.00 3.18
4089 5907 3.698289 TCGTTCAGTAGGAGGAGATGTT 58.302 45.455 0.00 0.00 0.00 2.71
4090 5908 3.367646 TCGTTCAGTAGGAGGAGATGT 57.632 47.619 0.00 0.00 0.00 3.06
4091 5909 4.158764 AGTTTCGTTCAGTAGGAGGAGATG 59.841 45.833 0.00 0.00 0.00 2.90
4092 5910 4.345854 AGTTTCGTTCAGTAGGAGGAGAT 58.654 43.478 0.00 0.00 0.00 2.75
4093 5911 3.764218 AGTTTCGTTCAGTAGGAGGAGA 58.236 45.455 0.00 0.00 0.00 3.71
4094 5912 5.838531 ATAGTTTCGTTCAGTAGGAGGAG 57.161 43.478 0.00 0.00 0.00 3.69
4095 5913 7.707624 TTTATAGTTTCGTTCAGTAGGAGGA 57.292 36.000 0.00 0.00 0.00 3.71
4096 5914 8.767478 TTTTTATAGTTTCGTTCAGTAGGAGG 57.233 34.615 0.00 0.00 0.00 4.30
4139 5957 1.550976 TGGACAACGGCCAAAGTTTTT 59.449 42.857 2.24 0.00 31.13 1.94
4140 5958 1.134936 GTGGACAACGGCCAAAGTTTT 60.135 47.619 2.24 0.00 37.12 2.43
4141 5959 0.458260 GTGGACAACGGCCAAAGTTT 59.542 50.000 2.24 0.00 37.12 2.66
4142 5960 1.388837 GGTGGACAACGGCCAAAGTT 61.389 55.000 2.24 0.00 37.12 2.66
4143 5961 1.826487 GGTGGACAACGGCCAAAGT 60.826 57.895 2.24 0.00 37.12 2.66
4144 5962 1.388065 TTGGTGGACAACGGCCAAAG 61.388 55.000 2.24 0.00 37.97 2.77
4145 5963 0.970937 TTTGGTGGACAACGGCCAAA 60.971 50.000 2.24 3.78 45.36 3.28
4146 5964 1.379977 TTTGGTGGACAACGGCCAA 60.380 52.632 2.24 0.00 39.19 4.52
4147 5965 2.122167 GTTTGGTGGACAACGGCCA 61.122 57.895 2.24 0.00 39.19 5.36
4148 5966 1.460273 ATGTTTGGTGGACAACGGCC 61.460 55.000 0.00 0.00 39.19 6.13
4149 5967 0.387565 AATGTTTGGTGGACAACGGC 59.612 50.000 0.00 0.00 39.19 5.68
4150 5968 1.678627 TCAATGTTTGGTGGACAACGG 59.321 47.619 0.00 0.00 39.19 4.44
4151 5969 2.357637 AGTCAATGTTTGGTGGACAACG 59.642 45.455 0.00 0.00 39.19 4.10
4152 5970 5.705609 ATAGTCAATGTTTGGTGGACAAC 57.294 39.130 0.00 0.00 39.19 3.32
4153 5971 5.830457 TCAATAGTCAATGTTTGGTGGACAA 59.170 36.000 0.00 0.00 37.28 3.18
4154 5972 5.240623 GTCAATAGTCAATGTTTGGTGGACA 59.759 40.000 0.00 0.00 0.00 4.02
4155 5973 5.473504 AGTCAATAGTCAATGTTTGGTGGAC 59.526 40.000 0.00 0.00 0.00 4.02
4156 5974 5.630121 AGTCAATAGTCAATGTTTGGTGGA 58.370 37.500 0.00 0.00 0.00 4.02
4157 5975 5.964958 AGTCAATAGTCAATGTTTGGTGG 57.035 39.130 0.00 0.00 0.00 4.61
4158 5976 9.743057 TTTAAAGTCAATAGTCAATGTTTGGTG 57.257 29.630 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.