Multiple sequence alignment - TraesCS1D01G431000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G431000 chr1D 100.000 4867 0 0 1 4867 481479571 481484437 0.000000e+00 8988.0
1 TraesCS1D01G431000 chr1D 94.902 1275 46 6 600 1867 481560034 481558772 0.000000e+00 1977.0
2 TraesCS1D01G431000 chr1D 92.691 1245 71 15 2728 3967 481557802 481556573 0.000000e+00 1777.0
3 TraesCS1D01G431000 chr1D 95.214 794 36 2 3974 4767 18040708 18039917 0.000000e+00 1254.0
4 TraesCS1D01G431000 chr1D 94.784 786 41 0 3974 4759 217633768 217634553 0.000000e+00 1225.0
5 TraesCS1D01G431000 chr1D 93.325 794 48 1 3974 4767 5289724 5290512 0.000000e+00 1168.0
6 TraesCS1D01G431000 chr1D 92.231 502 35 2 1 499 481560535 481560035 0.000000e+00 708.0
7 TraesCS1D01G431000 chr1D 86.199 442 41 18 1847 2276 481558695 481558262 1.230000e-125 460.0
8 TraesCS1D01G431000 chr1D 93.985 266 11 3 2416 2677 481558071 481557807 9.820000e-107 398.0
9 TraesCS1D01G431000 chr1D 100.000 101 0 0 4767 4867 254463185 254463085 2.310000e-43 187.0
10 TraesCS1D01G431000 chr1A 91.445 1882 108 17 7 1866 578018586 578016736 0.000000e+00 2534.0
11 TraesCS1D01G431000 chr1A 91.060 1622 113 20 2353 3967 578016163 578014567 0.000000e+00 2163.0
12 TraesCS1D01G431000 chr1A 88.706 425 36 6 1852 2274 578016575 578016161 4.350000e-140 508.0
13 TraesCS1D01G431000 chr1A 100.000 101 0 0 4767 4867 554485804 554485704 2.310000e-43 187.0
14 TraesCS1D01G431000 chr1A 100.000 28 0 0 909 936 20536374 20536347 9.000000e-03 52.8
15 TraesCS1D01G431000 chr1B 90.098 1636 110 34 2362 3967 670154606 670152993 0.000000e+00 2076.0
16 TraesCS1D01G431000 chr1B 89.960 1265 96 18 1028 2274 670155864 670154613 0.000000e+00 1604.0
17 TraesCS1D01G431000 chr1B 84.984 313 44 2 985 1297 669939170 669938861 1.020000e-81 315.0
18 TraesCS1D01G431000 chr1B 100.000 101 0 0 4767 4867 633720774 633720674 2.310000e-43 187.0
19 TraesCS1D01G431000 chr2A 94.710 794 40 2 3974 4767 411942271 411943062 0.000000e+00 1232.0
20 TraesCS1D01G431000 chr2A 89.756 205 21 0 2451 2655 203256661 203256457 3.740000e-66 263.0
21 TraesCS1D01G431000 chr2A 83.665 251 39 2 2906 3155 203255991 203255742 8.140000e-58 235.0
22 TraesCS1D01G431000 chr4D 93.836 795 47 2 3974 4767 232695492 232694699 0.000000e+00 1195.0
23 TraesCS1D01G431000 chr4D 100.000 101 0 0 4767 4867 270703335 270703235 2.310000e-43 187.0
24 TraesCS1D01G431000 chr4D 100.000 29 0 0 910 938 412128207 412128235 2.000000e-03 54.7
25 TraesCS1D01G431000 chr2D 93.836 795 48 1 3974 4767 306476723 306477517 0.000000e+00 1195.0
26 TraesCS1D01G431000 chr2D 93.484 798 46 4 3974 4767 346102542 346101747 0.000000e+00 1181.0
27 TraesCS1D01G431000 chr2D 88.182 220 26 0 2436 2655 189296483 189296264 3.740000e-66 263.0
28 TraesCS1D01G431000 chr2D 100.000 29 0 0 910 938 616528192 616528164 2.000000e-03 54.7
29 TraesCS1D01G431000 chr6D 93.467 796 48 4 3974 4766 191801643 191800849 0.000000e+00 1179.0
30 TraesCS1D01G431000 chr7D 93.342 796 49 4 3974 4766 621971585 621970791 0.000000e+00 1173.0
31 TraesCS1D01G431000 chr7D 92.593 54 3 1 2281 2334 18412350 18412298 5.220000e-10 76.8
32 TraesCS1D01G431000 chrUn 96.113 283 11 0 2879 3161 34767662 34767944 3.430000e-126 462.0
33 TraesCS1D01G431000 chrUn 100.000 101 0 0 4767 4867 433230481 433230581 2.310000e-43 187.0
34 TraesCS1D01G431000 chrUn 92.593 54 3 1 2281 2334 50823363 50823311 5.220000e-10 76.8
35 TraesCS1D01G431000 chrUn 91.111 45 4 0 2305 2349 343472336 343472380 1.460000e-05 62.1
36 TraesCS1D01G431000 chrUn 91.111 45 4 0 2305 2349 343590105 343590061 1.460000e-05 62.1
37 TraesCS1D01G431000 chrUn 100.000 28 0 0 907 934 124831747 124831720 9.000000e-03 52.8
38 TraesCS1D01G431000 chr2B 89.640 222 19 3 2436 2655 245318956 245318737 3.710000e-71 279.0
39 TraesCS1D01G431000 chr2B 100.000 101 0 0 4767 4867 683731223 683731123 2.310000e-43 187.0
40 TraesCS1D01G431000 chr3D 76.837 449 86 15 2 437 286853876 286854319 2.260000e-58 237.0
41 TraesCS1D01G431000 chr6B 79.211 279 53 5 2 278 130973413 130973688 6.430000e-44 189.0
42 TraesCS1D01G431000 chr5D 100.000 101 0 0 4767 4867 6249495 6249595 2.310000e-43 187.0
43 TraesCS1D01G431000 chr5D 100.000 101 0 0 4767 4867 512404318 512404218 2.310000e-43 187.0
44 TraesCS1D01G431000 chr5D 100.000 29 0 0 910 938 482394382 482394354 2.000000e-03 54.7
45 TraesCS1D01G431000 chr5B 100.000 101 0 0 4767 4867 57510263 57510363 2.310000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G431000 chr1D 481479571 481484437 4866 False 8988 8988 100.000000 1 4867 1 chr1D.!!$F3 4866
1 TraesCS1D01G431000 chr1D 18039917 18040708 791 True 1254 1254 95.214000 3974 4767 1 chr1D.!!$R1 793
2 TraesCS1D01G431000 chr1D 217633768 217634553 785 False 1225 1225 94.784000 3974 4759 1 chr1D.!!$F2 785
3 TraesCS1D01G431000 chr1D 5289724 5290512 788 False 1168 1168 93.325000 3974 4767 1 chr1D.!!$F1 793
4 TraesCS1D01G431000 chr1D 481556573 481560535 3962 True 1064 1977 92.001600 1 3967 5 chr1D.!!$R3 3966
5 TraesCS1D01G431000 chr1A 578014567 578018586 4019 True 1735 2534 90.403667 7 3967 3 chr1A.!!$R3 3960
6 TraesCS1D01G431000 chr1B 670152993 670155864 2871 True 1840 2076 90.029000 1028 3967 2 chr1B.!!$R3 2939
7 TraesCS1D01G431000 chr2A 411942271 411943062 791 False 1232 1232 94.710000 3974 4767 1 chr2A.!!$F1 793
8 TraesCS1D01G431000 chr2A 203255742 203256661 919 True 249 263 86.710500 2451 3155 2 chr2A.!!$R1 704
9 TraesCS1D01G431000 chr4D 232694699 232695492 793 True 1195 1195 93.836000 3974 4767 1 chr4D.!!$R1 793
10 TraesCS1D01G431000 chr2D 306476723 306477517 794 False 1195 1195 93.836000 3974 4767 1 chr2D.!!$F1 793
11 TraesCS1D01G431000 chr2D 346101747 346102542 795 True 1181 1181 93.484000 3974 4767 1 chr2D.!!$R2 793
12 TraesCS1D01G431000 chr6D 191800849 191801643 794 True 1179 1179 93.467000 3974 4766 1 chr6D.!!$R1 792
13 TraesCS1D01G431000 chr7D 621970791 621971585 794 True 1173 1173 93.342000 3974 4766 1 chr7D.!!$R2 792

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
256 258 0.099082 CTGCGAACCGAGACTAGGAC 59.901 60.0 8.81 1.62 0.00 3.85 F
558 563 0.109319 GCCGCATTGGTTTGAATCGT 60.109 50.0 0.00 0.00 41.21 3.73 F
1840 1864 0.261991 ATCTCCTTCGGCTACTCCCA 59.738 55.0 0.00 0.00 0.00 4.37 F
2316 2533 0.465824 ATGCTCAAGCCAGCTCATCC 60.466 55.0 0.00 0.00 40.39 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1830 1854 0.179034 CTCCATGCTTGGGAGTAGCC 60.179 60.000 17.95 0.0 45.59 3.93 R
2183 2400 0.237235 GCAGTGCCGTCAAATCGAAA 59.763 50.000 2.85 0.0 0.00 3.46 R
2697 3069 0.172803 ACTCTCGATACAACCGCACC 59.827 55.000 0.00 0.0 0.00 5.01 R
4138 4741 1.414919 TCCTGTCCAGTTACGCTTTGT 59.585 47.619 0.00 0.0 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 5.893824 ACAAAGAAGGAGGAAGAACAACATT 59.106 36.000 0.00 0.00 0.00 2.71
150 152 1.203994 CCCAACTAGTGTCGGTCGATT 59.796 52.381 0.00 0.00 0.00 3.34
152 154 2.666508 CCAACTAGTGTCGGTCGATTTG 59.333 50.000 0.00 0.00 0.00 2.32
226 228 1.488393 GCTCCTAGACCAAGGCAAGAT 59.512 52.381 0.00 0.00 36.51 2.40
245 247 2.613506 CCCCGTTTGACTGCGAACC 61.614 63.158 0.00 0.00 35.38 3.62
249 251 0.937699 CGTTTGACTGCGAACCGAGA 60.938 55.000 0.00 0.00 35.38 4.04
256 258 0.099082 CTGCGAACCGAGACTAGGAC 59.901 60.000 8.81 1.62 0.00 3.85
271 273 5.426833 AGACTAGGACAACTTATTCAGGCAT 59.573 40.000 0.00 0.00 0.00 4.40
293 295 2.745884 CCACCGCGATGGCTTCAA 60.746 61.111 6.55 0.00 43.94 2.69
306 308 2.158475 TGGCTTCAACAACTCCCTCAAT 60.158 45.455 0.00 0.00 0.00 2.57
329 331 4.163458 TCCTAACCAAACTGAGAACACACT 59.837 41.667 0.00 0.00 0.00 3.55
340 342 1.825474 AGAACACACTCGACCCATAGG 59.175 52.381 0.00 0.00 40.04 2.57
350 352 3.637065 ACCCATAGGTCTGAGGTCC 57.363 57.895 0.00 0.00 46.45 4.46
397 399 1.584380 CGACGAACGGAGAGGGAACT 61.584 60.000 0.00 0.00 40.55 3.01
433 438 4.394712 CAAAGGGACCCGCTCGCT 62.395 66.667 4.40 0.00 43.98 4.93
476 481 2.231478 CCTCGTCTCATGTACCAACTGT 59.769 50.000 0.00 0.00 0.00 3.55
479 484 4.329392 TCGTCTCATGTACCAACTGTCTA 58.671 43.478 0.00 0.00 0.00 2.59
496 501 2.703007 GTCTAATCCTCCCACATCTGCT 59.297 50.000 0.00 0.00 0.00 4.24
511 516 0.109597 CTGCTTGTGACAAATCCCGC 60.110 55.000 0.00 0.00 0.00 6.13
512 517 0.537143 TGCTTGTGACAAATCCCGCT 60.537 50.000 0.00 0.00 0.00 5.52
513 518 0.169009 GCTTGTGACAAATCCCGCTC 59.831 55.000 0.00 0.00 0.00 5.03
514 519 0.443869 CTTGTGACAAATCCCGCTCG 59.556 55.000 0.00 0.00 0.00 5.03
515 520 0.953471 TTGTGACAAATCCCGCTCGG 60.953 55.000 0.00 0.48 0.00 4.63
516 521 2.435938 TGACAAATCCCGCTCGGC 60.436 61.111 2.18 0.00 0.00 5.54
558 563 0.109319 GCCGCATTGGTTTGAATCGT 60.109 50.000 0.00 0.00 41.21 3.73
589 594 6.229733 CCCTGGATTTGATCTCAATCTAGAC 58.770 44.000 22.29 8.23 35.55 2.59
653 658 2.291411 ACATGCCATGGCTTTCTCTCTT 60.291 45.455 35.53 8.35 42.51 2.85
717 723 3.712907 GCCGGCAGGGACAGGTTA 61.713 66.667 24.80 0.00 38.47 2.85
766 778 2.297033 GTCCCAATCTTGTGTGCAATGT 59.703 45.455 0.00 0.00 33.65 2.71
913 936 3.673746 AATATGACAAATGGTGCGTCG 57.326 42.857 0.00 0.00 32.17 5.12
914 937 0.724549 TATGACAAATGGTGCGTCGC 59.275 50.000 11.10 11.10 32.17 5.19
1434 1458 0.387929 TCACTTTCTCCGTTGTCGCT 59.612 50.000 0.00 0.00 35.54 4.93
1495 1519 2.278206 CGGTCAGTGCGATCCTCG 60.278 66.667 0.00 0.00 43.89 4.63
1777 1801 2.758327 TGCGGCCCATCTACGACT 60.758 61.111 0.00 0.00 0.00 4.18
1778 1802 1.454295 TGCGGCCCATCTACGACTA 60.454 57.895 0.00 0.00 0.00 2.59
1779 1803 1.007618 GCGGCCCATCTACGACTAC 60.008 63.158 0.00 0.00 0.00 2.73
1780 1804 1.281960 CGGCCCATCTACGACTACG 59.718 63.158 0.00 0.00 45.75 3.51
1781 1805 1.162181 CGGCCCATCTACGACTACGA 61.162 60.000 0.00 0.00 42.66 3.43
1782 1806 0.310232 GGCCCATCTACGACTACGAC 59.690 60.000 0.00 0.00 42.66 4.34
1805 1829 0.885879 CAGGCAATGCTTCAGCTTCA 59.114 50.000 4.82 0.00 42.66 3.02
1830 1854 2.202932 CCACCGCCATCTCCTTCG 60.203 66.667 0.00 0.00 0.00 3.79
1832 1856 4.162690 ACCGCCATCTCCTTCGGC 62.163 66.667 0.00 0.00 45.23 5.54
1833 1857 3.854669 CCGCCATCTCCTTCGGCT 61.855 66.667 0.00 0.00 43.95 5.52
1840 1864 0.261991 ATCTCCTTCGGCTACTCCCA 59.738 55.000 0.00 0.00 0.00 4.37
1872 2070 5.892119 AGCAGGTAGTATCTAGCACACTTTA 59.108 40.000 8.35 0.00 0.00 1.85
1873 2071 5.978322 GCAGGTAGTATCTAGCACACTTTAC 59.022 44.000 8.35 0.00 0.00 2.01
1874 2075 6.405508 GCAGGTAGTATCTAGCACACTTTACA 60.406 42.308 8.35 0.00 0.00 2.41
1879 2080 9.804758 GTAGTATCTAGCACACTTTACATTTCT 57.195 33.333 0.00 0.00 0.00 2.52
1931 2147 5.640732 TCTTTTATTTTCTCGCCATTCAGC 58.359 37.500 0.00 0.00 0.00 4.26
1935 2151 2.995466 TTTCTCGCCATTCAGCAAAG 57.005 45.000 0.00 0.00 0.00 2.77
1943 2159 2.297033 GCCATTCAGCAAAGACAAGGAA 59.703 45.455 0.00 0.00 0.00 3.36
1948 2164 3.159472 TCAGCAAAGACAAGGAATGCAT 58.841 40.909 0.00 0.00 39.42 3.96
2097 2313 4.260132 GCATCTAGCAAAGTCATCTGTTCG 60.260 45.833 0.00 0.00 44.79 3.95
2098 2314 4.521130 TCTAGCAAAGTCATCTGTTCGT 57.479 40.909 0.00 0.00 0.00 3.85
2099 2315 4.883083 TCTAGCAAAGTCATCTGTTCGTT 58.117 39.130 0.00 0.00 0.00 3.85
2100 2316 4.923871 TCTAGCAAAGTCATCTGTTCGTTC 59.076 41.667 0.00 0.00 0.00 3.95
2101 2317 3.733337 AGCAAAGTCATCTGTTCGTTCT 58.267 40.909 0.00 0.00 0.00 3.01
2102 2318 4.883083 AGCAAAGTCATCTGTTCGTTCTA 58.117 39.130 0.00 0.00 0.00 2.10
2103 2319 4.926238 AGCAAAGTCATCTGTTCGTTCTAG 59.074 41.667 0.00 0.00 0.00 2.43
2107 2323 4.013728 AGTCATCTGTTCGTTCTAGAGCT 58.986 43.478 4.99 0.00 0.00 4.09
2149 2366 8.358895 TGACAACATTCTTGCTTTTCATATGAA 58.641 29.630 14.23 14.23 0.00 2.57
2159 2376 6.465948 TGCTTTTCATATGAAACCAGCATTT 58.534 32.000 33.67 0.00 45.40 2.32
2160 2377 6.591062 TGCTTTTCATATGAAACCAGCATTTC 59.409 34.615 33.67 17.97 45.40 2.17
2274 2491 9.569122 GTGGTTATGGAATTGTATACAAGGTAT 57.431 33.333 22.03 15.25 39.47 2.73
2275 2492 9.567776 TGGTTATGGAATTGTATACAAGGTATG 57.432 33.333 22.03 0.00 39.47 2.39
2276 2493 9.569122 GGTTATGGAATTGTATACAAGGTATGT 57.431 33.333 22.03 9.95 46.36 2.29
2278 2495 7.962964 ATGGAATTGTATACAAGGTATGTCG 57.037 36.000 22.03 0.00 42.70 4.35
2279 2496 6.880484 TGGAATTGTATACAAGGTATGTCGT 58.120 36.000 22.03 0.99 42.70 4.34
2280 2497 8.009622 TGGAATTGTATACAAGGTATGTCGTA 57.990 34.615 22.03 0.00 42.70 3.43
2281 2498 8.644216 TGGAATTGTATACAAGGTATGTCGTAT 58.356 33.333 22.03 0.00 42.70 3.06
2286 2503 8.021955 TGTATACAAGGTATGTCGTATACTCG 57.978 38.462 2.20 0.00 43.47 4.18
2287 2504 7.657354 TGTATACAAGGTATGTCGTATACTCGT 59.343 37.037 2.20 0.00 43.47 4.18
2288 2505 9.140286 GTATACAAGGTATGTCGTATACTCGTA 57.860 37.037 0.56 9.88 42.70 3.43
2289 2506 8.783833 ATACAAGGTATGTCGTATACTCGTAT 57.216 34.615 0.56 11.06 42.70 3.06
2290 2507 7.502120 ACAAGGTATGTCGTATACTCGTATT 57.498 36.000 0.56 0.00 37.96 1.89
2291 2508 7.358066 ACAAGGTATGTCGTATACTCGTATTG 58.642 38.462 0.56 5.54 37.96 1.90
2292 2509 7.227314 ACAAGGTATGTCGTATACTCGTATTGA 59.773 37.037 0.56 0.00 37.96 2.57
2293 2510 7.734924 AGGTATGTCGTATACTCGTATTGAA 57.265 36.000 0.56 0.00 0.00 2.69
2294 2511 8.332996 AGGTATGTCGTATACTCGTATTGAAT 57.667 34.615 0.56 0.00 0.00 2.57
2295 2512 8.790718 AGGTATGTCGTATACTCGTATTGAATT 58.209 33.333 0.56 0.00 0.00 2.17
2296 2513 9.403110 GGTATGTCGTATACTCGTATTGAATTT 57.597 33.333 0.56 0.00 0.00 1.82
2300 2517 8.908678 TGTCGTATACTCGTATTGAATTTATGC 58.091 33.333 0.56 0.00 0.00 3.14
2301 2518 9.125906 GTCGTATACTCGTATTGAATTTATGCT 57.874 33.333 0.56 0.00 0.00 3.79
2302 2519 9.338291 TCGTATACTCGTATTGAATTTATGCTC 57.662 33.333 0.56 0.00 0.00 4.26
2303 2520 9.124807 CGTATACTCGTATTGAATTTATGCTCA 57.875 33.333 0.56 0.00 0.00 4.26
2306 2523 6.719365 ACTCGTATTGAATTTATGCTCAAGC 58.281 36.000 0.00 0.00 42.50 4.01
2307 2524 6.060028 TCGTATTGAATTTATGCTCAAGCC 57.940 37.500 0.00 0.00 41.18 4.35
2308 2525 5.588246 TCGTATTGAATTTATGCTCAAGCCA 59.412 36.000 0.00 0.00 41.18 4.75
2309 2526 5.911280 CGTATTGAATTTATGCTCAAGCCAG 59.089 40.000 0.00 0.00 41.18 4.85
2310 2527 3.788333 TGAATTTATGCTCAAGCCAGC 57.212 42.857 0.00 0.00 41.18 4.85
2311 2528 3.359033 TGAATTTATGCTCAAGCCAGCT 58.641 40.909 0.00 0.00 40.39 4.24
2312 2529 3.379372 TGAATTTATGCTCAAGCCAGCTC 59.621 43.478 0.00 0.00 40.39 4.09
2313 2530 2.495155 TTTATGCTCAAGCCAGCTCA 57.505 45.000 0.00 0.00 40.39 4.26
2314 2531 2.723322 TTATGCTCAAGCCAGCTCAT 57.277 45.000 0.00 0.00 40.39 2.90
2315 2532 2.251409 TATGCTCAAGCCAGCTCATC 57.749 50.000 0.00 0.00 40.39 2.92
2316 2533 0.465824 ATGCTCAAGCCAGCTCATCC 60.466 55.000 0.00 0.00 40.39 3.51
2317 2534 1.077930 GCTCAAGCCAGCTCATCCA 60.078 57.895 0.00 0.00 36.38 3.41
2318 2535 0.679002 GCTCAAGCCAGCTCATCCAA 60.679 55.000 0.00 0.00 36.38 3.53
2319 2536 1.830279 CTCAAGCCAGCTCATCCAAA 58.170 50.000 0.00 0.00 0.00 3.28
2320 2537 2.165167 CTCAAGCCAGCTCATCCAAAA 58.835 47.619 0.00 0.00 0.00 2.44
2321 2538 2.163815 CTCAAGCCAGCTCATCCAAAAG 59.836 50.000 0.00 0.00 0.00 2.27
2322 2539 1.891150 CAAGCCAGCTCATCCAAAAGT 59.109 47.619 0.00 0.00 0.00 2.66
2323 2540 1.831580 AGCCAGCTCATCCAAAAGTC 58.168 50.000 0.00 0.00 0.00 3.01
2324 2541 0.813821 GCCAGCTCATCCAAAAGTCC 59.186 55.000 0.00 0.00 0.00 3.85
2325 2542 1.089920 CCAGCTCATCCAAAAGTCCG 58.910 55.000 0.00 0.00 0.00 4.79
2326 2543 1.339055 CCAGCTCATCCAAAAGTCCGA 60.339 52.381 0.00 0.00 0.00 4.55
2327 2544 2.426522 CAGCTCATCCAAAAGTCCGAA 58.573 47.619 0.00 0.00 0.00 4.30
2328 2545 2.160417 CAGCTCATCCAAAAGTCCGAAC 59.840 50.000 0.00 0.00 0.00 3.95
2329 2546 2.039084 AGCTCATCCAAAAGTCCGAACT 59.961 45.455 0.00 0.00 37.32 3.01
2330 2547 2.160417 GCTCATCCAAAAGTCCGAACTG 59.840 50.000 0.00 0.00 35.36 3.16
2331 2548 3.664107 CTCATCCAAAAGTCCGAACTGA 58.336 45.455 0.00 0.00 35.36 3.41
2332 2549 4.256920 CTCATCCAAAAGTCCGAACTGAT 58.743 43.478 0.00 0.00 35.36 2.90
2333 2550 4.002982 TCATCCAAAAGTCCGAACTGATG 58.997 43.478 0.00 0.00 35.25 3.07
2334 2551 3.762407 TCCAAAAGTCCGAACTGATGA 57.238 42.857 0.00 0.00 35.36 2.92
2335 2552 4.079980 TCCAAAAGTCCGAACTGATGAA 57.920 40.909 0.00 0.00 35.36 2.57
2336 2553 4.651778 TCCAAAAGTCCGAACTGATGAAT 58.348 39.130 0.00 0.00 35.36 2.57
2337 2554 5.070001 TCCAAAAGTCCGAACTGATGAATT 58.930 37.500 0.00 0.00 35.36 2.17
2338 2555 6.234920 TCCAAAAGTCCGAACTGATGAATTA 58.765 36.000 0.00 0.00 35.36 1.40
2339 2556 6.712998 TCCAAAAGTCCGAACTGATGAATTAA 59.287 34.615 0.00 0.00 35.36 1.40
2340 2557 7.023575 CCAAAAGTCCGAACTGATGAATTAAG 58.976 38.462 0.00 0.00 35.36 1.85
2341 2558 7.094805 CCAAAAGTCCGAACTGATGAATTAAGA 60.095 37.037 0.00 0.00 35.36 2.10
2342 2559 6.969828 AAGTCCGAACTGATGAATTAAGAC 57.030 37.500 0.00 0.00 35.36 3.01
2343 2560 5.103000 AGTCCGAACTGATGAATTAAGACG 58.897 41.667 0.00 0.00 33.32 4.18
2344 2561 4.267928 GTCCGAACTGATGAATTAAGACGG 59.732 45.833 0.00 0.00 36.55 4.79
2345 2562 3.555956 CCGAACTGATGAATTAAGACGGG 59.444 47.826 0.00 0.00 34.03 5.28
2346 2563 3.001330 CGAACTGATGAATTAAGACGGGC 59.999 47.826 0.00 0.00 0.00 6.13
2347 2564 3.627395 ACTGATGAATTAAGACGGGCA 57.373 42.857 0.00 0.00 0.00 5.36
2348 2565 3.950397 ACTGATGAATTAAGACGGGCAA 58.050 40.909 0.00 0.00 0.00 4.52
2349 2566 4.331968 ACTGATGAATTAAGACGGGCAAA 58.668 39.130 0.00 0.00 0.00 3.68
2350 2567 4.156008 ACTGATGAATTAAGACGGGCAAAC 59.844 41.667 0.00 0.00 0.00 2.93
2351 2568 4.075682 TGATGAATTAAGACGGGCAAACA 58.924 39.130 0.00 0.00 0.00 2.83
2352 2569 4.155826 TGATGAATTAAGACGGGCAAACAG 59.844 41.667 0.00 0.00 0.00 3.16
2353 2570 3.482436 TGAATTAAGACGGGCAAACAGT 58.518 40.909 0.00 0.00 0.00 3.55
2354 2571 4.643463 TGAATTAAGACGGGCAAACAGTA 58.357 39.130 0.00 0.00 0.00 2.74
2373 2590 7.100458 ACAGTATGAAAACAAGCAAGAAAGT 57.900 32.000 0.00 0.00 39.69 2.66
2406 2760 4.569943 AGAGTCGGATATATTGCGCATTT 58.430 39.130 12.75 4.47 39.30 2.32
2536 2893 0.816825 ATGAGGTGCTGCTATTGGCG 60.817 55.000 0.00 0.00 45.43 5.69
2589 2946 2.485122 GTTTTGCTCGCATCGGGG 59.515 61.111 0.00 0.00 0.00 5.73
2686 3043 2.233922 CCATTCACTACTCTGGGTCGTT 59.766 50.000 0.00 0.00 0.00 3.85
2697 3069 0.318360 TGGGTCGTTATATGCGCTCG 60.318 55.000 9.73 4.25 0.00 5.03
2711 3138 2.514013 GCTCGGTGCGGTTGTATCG 61.514 63.158 0.00 0.00 35.46 2.92
2715 3142 0.866061 CGGTGCGGTTGTATCGAGAG 60.866 60.000 0.00 0.00 36.30 3.20
2726 3153 5.063564 GGTTGTATCGAGAGTGAAAATGTCC 59.936 44.000 0.00 0.00 0.00 4.02
2769 3343 7.446769 TCACTACTGTAGTATTTCCAGCAAAA 58.553 34.615 19.32 0.00 37.23 2.44
2796 3375 9.979578 AAATTTTGCACAACTAAGATTCATACA 57.020 25.926 0.00 0.00 0.00 2.29
2797 3376 8.970691 ATTTTGCACAACTAAGATTCATACAC 57.029 30.769 0.00 0.00 0.00 2.90
2798 3377 6.494893 TTGCACAACTAAGATTCATACACC 57.505 37.500 0.00 0.00 0.00 4.16
2826 3405 8.871686 TTTATTTTCTTCCAAACTTCTTCAGC 57.128 30.769 0.00 0.00 0.00 4.26
2836 3427 3.567478 ACTTCTTCAGCCAAGTGAGTT 57.433 42.857 0.00 0.00 31.42 3.01
2837 3428 3.471680 ACTTCTTCAGCCAAGTGAGTTC 58.528 45.455 0.00 0.00 31.42 3.01
2924 3520 2.427453 CGGCAACAGATACTAGTGAGGT 59.573 50.000 5.39 0.00 0.00 3.85
2925 3521 3.119101 CGGCAACAGATACTAGTGAGGTT 60.119 47.826 5.39 2.11 0.00 3.50
2970 3566 8.729756 CAACAGTACAACATCATTCTTGGAATA 58.270 33.333 0.00 0.00 0.00 1.75
3003 3599 3.018149 ACTGTATCTTCACGAGGACTCC 58.982 50.000 0.00 0.00 0.00 3.85
3287 3884 1.605971 TATGGCACCGGAGTACGCAA 61.606 55.000 9.46 0.00 42.52 4.85
3335 3932 9.396022 AGATCGATATTTTCAGTTTTGGTGTAT 57.604 29.630 0.00 0.00 0.00 2.29
3659 4256 2.128035 GACGACAGGCCTCAAATATCG 58.872 52.381 0.00 8.38 0.00 2.92
3789 4386 3.211245 GCCGCTACATGCATGGCA 61.211 61.111 29.41 16.14 44.28 4.92
3791 4388 1.524393 CCGCTACATGCATGGCAGA 60.524 57.895 29.41 11.47 43.65 4.26
3793 4390 0.516001 CGCTACATGCATGGCAGATC 59.484 55.000 29.41 13.04 43.65 2.75
3794 4391 1.876837 CGCTACATGCATGGCAGATCT 60.877 52.381 29.41 10.09 43.65 2.75
3798 4395 1.071857 ACATGCATGGCAGATCTCGAT 59.928 47.619 29.41 1.84 43.65 3.59
3801 4398 2.242043 TGCATGGCAGATCTCGATCTA 58.758 47.619 8.96 0.00 45.78 1.98
3804 4401 3.864583 GCATGGCAGATCTCGATCTAATC 59.135 47.826 8.96 3.58 45.78 1.75
3842 4439 3.520317 ACGTATCTTGGAATGGGGTTACA 59.480 43.478 0.00 0.00 0.00 2.41
3867 4464 3.235200 ACTGAGCCATATCCTAGGTGAC 58.765 50.000 9.08 0.00 0.00 3.67
3875 4472 5.105310 GCCATATCCTAGGTGACATACGATT 60.105 44.000 9.08 0.00 0.00 3.34
3889 4486 6.878923 TGACATACGATTTGGATTCTTGAAGT 59.121 34.615 0.00 0.00 0.00 3.01
3902 4499 2.165167 CTTGAAGTGGCCATGTCATGT 58.835 47.619 18.89 0.00 0.00 3.21
3941 4539 3.326880 CCAGTAGGCCGGATTAGGTTTAT 59.673 47.826 5.05 0.00 0.00 1.40
3942 4540 4.529377 CCAGTAGGCCGGATTAGGTTTATA 59.471 45.833 5.05 0.00 0.00 0.98
3952 4554 7.321153 CCGGATTAGGTTTATATCTTCATCGT 58.679 38.462 0.00 0.00 0.00 3.73
3956 4558 8.764524 ATTAGGTTTATATCTTCATCGTGAGC 57.235 34.615 0.00 0.00 0.00 4.26
3967 4569 4.200838 TCATCGTGAGCCTTGTAATCAA 57.799 40.909 0.00 0.00 0.00 2.57
3968 4570 4.769688 TCATCGTGAGCCTTGTAATCAAT 58.230 39.130 0.00 0.00 32.82 2.57
3969 4571 4.571984 TCATCGTGAGCCTTGTAATCAATG 59.428 41.667 0.00 0.00 32.82 2.82
3970 4572 3.937814 TCGTGAGCCTTGTAATCAATGT 58.062 40.909 0.00 0.00 32.82 2.71
3971 4573 5.079689 TCGTGAGCCTTGTAATCAATGTA 57.920 39.130 0.00 0.00 32.82 2.29
3972 4574 5.670485 TCGTGAGCCTTGTAATCAATGTAT 58.330 37.500 0.00 0.00 32.82 2.29
3989 4591 6.778069 TCAATGTATCTTACTAGGTCTGGAGG 59.222 42.308 0.00 0.00 0.00 4.30
4134 4737 5.531287 ACAAGTCATCTTAACCAAGGACAAC 59.469 40.000 0.00 0.00 29.91 3.32
4138 4741 7.854381 AAGTCATCTTAACCAAGGACAACTTGA 60.854 37.037 8.55 0.00 44.24 3.02
4186 4789 4.345859 AGGTGTAGTTTTTGTGATCGGA 57.654 40.909 0.00 0.00 0.00 4.55
4209 4812 8.293867 CGGAATGAAACTATCAAACACCTTTTA 58.706 33.333 0.00 0.00 42.54 1.52
4470 5073 1.862827 GCGTTAATCCGTATGTGGTCC 59.137 52.381 0.00 0.00 0.00 4.46
4632 5237 1.819905 CCGGTTGTGGCTTTTTGGT 59.180 52.632 0.00 0.00 0.00 3.67
4711 5319 7.571025 AGACTTTAAGACCTTGTTGAACCTAA 58.429 34.615 0.00 0.00 0.00 2.69
4769 5377 3.230245 CAGAGGCCGGGGAGCTAG 61.230 72.222 2.18 0.00 0.00 3.42
4770 5378 3.756783 AGAGGCCGGGGAGCTAGT 61.757 66.667 2.18 0.00 0.00 2.57
4771 5379 2.764547 GAGGCCGGGGAGCTAGTT 60.765 66.667 2.18 0.00 0.00 2.24
4772 5380 1.457079 GAGGCCGGGGAGCTAGTTA 60.457 63.158 2.18 0.00 0.00 2.24
4773 5381 1.746322 GAGGCCGGGGAGCTAGTTAC 61.746 65.000 2.18 0.00 0.00 2.50
4774 5382 2.804912 GGCCGGGGAGCTAGTTACC 61.805 68.421 2.18 0.00 0.00 2.85
4775 5383 2.804912 GCCGGGGAGCTAGTTACCC 61.805 68.421 17.04 17.04 42.58 3.69
4779 5387 3.950611 GGGAGCTAGTTACCCCTCT 57.049 57.895 0.00 0.00 37.85 3.69
4780 5388 2.177811 GGGAGCTAGTTACCCCTCTT 57.822 55.000 0.00 0.00 37.85 2.85
4781 5389 2.479340 GGGAGCTAGTTACCCCTCTTT 58.521 52.381 0.00 0.00 37.85 2.52
4782 5390 3.650948 GGGAGCTAGTTACCCCTCTTTA 58.349 50.000 0.00 0.00 37.85 1.85
4783 5391 3.642377 GGGAGCTAGTTACCCCTCTTTAG 59.358 52.174 0.00 0.00 37.85 1.85
4784 5392 4.288398 GGAGCTAGTTACCCCTCTTTAGT 58.712 47.826 0.00 0.00 0.00 2.24
4785 5393 4.715792 GGAGCTAGTTACCCCTCTTTAGTT 59.284 45.833 0.00 0.00 0.00 2.24
4786 5394 5.189342 GGAGCTAGTTACCCCTCTTTAGTTT 59.811 44.000 0.00 0.00 0.00 2.66
4787 5395 6.382282 GGAGCTAGTTACCCCTCTTTAGTTTA 59.618 42.308 0.00 0.00 0.00 2.01
4788 5396 7.093156 GGAGCTAGTTACCCCTCTTTAGTTTAA 60.093 40.741 0.00 0.00 0.00 1.52
4789 5397 7.849160 AGCTAGTTACCCCTCTTTAGTTTAAG 58.151 38.462 0.00 0.00 0.00 1.85
4790 5398 7.677319 AGCTAGTTACCCCTCTTTAGTTTAAGA 59.323 37.037 0.00 0.00 33.33 2.10
4791 5399 7.980662 GCTAGTTACCCCTCTTTAGTTTAAGAG 59.019 40.741 6.44 6.44 46.92 2.85
4792 5400 7.868792 AGTTACCCCTCTTTAGTTTAAGAGT 57.131 36.000 11.25 0.00 46.27 3.24
4793 5401 8.962912 AGTTACCCCTCTTTAGTTTAAGAGTA 57.037 34.615 11.25 0.00 46.27 2.59
4794 5402 9.558133 AGTTACCCCTCTTTAGTTTAAGAGTAT 57.442 33.333 11.25 1.42 46.27 2.12
4798 5406 9.423964 ACCCCTCTTTAGTTTAAGAGTATAGAG 57.576 37.037 11.25 0.00 46.27 2.43
4799 5407 8.361889 CCCCTCTTTAGTTTAAGAGTATAGAGC 58.638 40.741 11.25 0.00 46.27 4.09
4800 5408 8.915036 CCCTCTTTAGTTTAAGAGTATAGAGCA 58.085 37.037 11.25 0.00 46.27 4.26
4801 5409 9.959749 CCTCTTTAGTTTAAGAGTATAGAGCAG 57.040 37.037 11.25 0.00 46.27 4.24
4806 5414 9.871238 TTAGTTTAAGAGTATAGAGCAGTTTGG 57.129 33.333 0.00 0.00 0.00 3.28
4807 5415 7.908453 AGTTTAAGAGTATAGAGCAGTTTGGT 58.092 34.615 0.00 0.00 0.00 3.67
4808 5416 9.032624 AGTTTAAGAGTATAGAGCAGTTTGGTA 57.967 33.333 0.00 0.00 0.00 3.25
4809 5417 9.303537 GTTTAAGAGTATAGAGCAGTTTGGTAG 57.696 37.037 0.00 0.00 0.00 3.18
4810 5418 5.523438 AGAGTATAGAGCAGTTTGGTAGC 57.477 43.478 0.00 0.00 0.00 3.58
4811 5419 5.205056 AGAGTATAGAGCAGTTTGGTAGCT 58.795 41.667 0.00 0.00 42.17 3.32
4818 5426 3.878778 AGCAGTTTGGTAGCTCATAAGG 58.121 45.455 0.00 0.00 32.05 2.69
4819 5427 2.356069 GCAGTTTGGTAGCTCATAAGGC 59.644 50.000 0.00 0.00 0.00 4.35
4820 5428 3.878778 CAGTTTGGTAGCTCATAAGGCT 58.121 45.455 0.00 0.00 43.02 4.58
4821 5429 3.873952 CAGTTTGGTAGCTCATAAGGCTC 59.126 47.826 0.00 0.00 40.74 4.70
4822 5430 3.519510 AGTTTGGTAGCTCATAAGGCTCA 59.480 43.478 0.00 0.00 40.74 4.26
4823 5431 4.164988 AGTTTGGTAGCTCATAAGGCTCAT 59.835 41.667 0.00 0.00 40.74 2.90
4824 5432 5.366768 AGTTTGGTAGCTCATAAGGCTCATA 59.633 40.000 0.00 0.00 40.74 2.15
4825 5433 5.887214 TTGGTAGCTCATAAGGCTCATAA 57.113 39.130 0.00 0.00 40.74 1.90
4826 5434 5.215252 TGGTAGCTCATAAGGCTCATAAC 57.785 43.478 0.00 0.00 40.74 1.89
4827 5435 4.040461 TGGTAGCTCATAAGGCTCATAACC 59.960 45.833 0.00 0.00 40.74 2.85
4828 5436 4.284746 GGTAGCTCATAAGGCTCATAACCT 59.715 45.833 0.00 0.00 40.74 3.50
4830 5438 4.712476 AGCTCATAAGGCTCATAACCTTG 58.288 43.478 5.32 0.00 46.99 3.61
4831 5439 3.817647 GCTCATAAGGCTCATAACCTTGG 59.182 47.826 5.32 0.00 46.99 3.61
4832 5440 4.392940 CTCATAAGGCTCATAACCTTGGG 58.607 47.826 5.32 0.00 46.99 4.12
4833 5441 3.138283 TCATAAGGCTCATAACCTTGGGG 59.862 47.826 5.32 0.00 46.99 4.96
4834 5442 1.382914 AAGGCTCATAACCTTGGGGT 58.617 50.000 0.00 0.00 45.88 4.95
4842 5450 3.828023 ACCTTGGGGTTGCGGGTT 61.828 61.111 0.00 0.00 44.73 4.11
4843 5451 2.989253 CCTTGGGGTTGCGGGTTC 60.989 66.667 0.00 0.00 0.00 3.62
4844 5452 3.361977 CTTGGGGTTGCGGGTTCG 61.362 66.667 0.00 0.00 39.81 3.95
4845 5453 3.835790 CTTGGGGTTGCGGGTTCGA 62.836 63.158 0.00 0.00 39.00 3.71
4846 5454 3.198953 TTGGGGTTGCGGGTTCGAT 62.199 57.895 0.00 0.00 39.00 3.59
4847 5455 2.360726 GGGGTTGCGGGTTCGATT 60.361 61.111 0.00 0.00 39.00 3.34
4848 5456 2.404186 GGGGTTGCGGGTTCGATTC 61.404 63.158 0.00 0.00 39.00 2.52
4849 5457 2.404186 GGGTTGCGGGTTCGATTCC 61.404 63.158 0.00 0.00 39.00 3.01
4850 5458 2.404186 GGTTGCGGGTTCGATTCCC 61.404 63.158 14.08 14.08 41.41 3.97
4851 5459 1.673009 GTTGCGGGTTCGATTCCCA 60.673 57.895 21.03 8.55 44.81 4.37
4852 5460 1.673009 TTGCGGGTTCGATTCCCAC 60.673 57.895 21.03 14.37 44.81 4.61
4853 5461 2.119484 TTGCGGGTTCGATTCCCACT 62.119 55.000 21.03 0.00 44.81 4.00
4854 5462 1.259142 TGCGGGTTCGATTCCCACTA 61.259 55.000 21.03 7.94 44.81 2.74
4855 5463 0.808847 GCGGGTTCGATTCCCACTAC 60.809 60.000 21.03 7.86 44.81 2.73
4856 5464 0.179092 CGGGTTCGATTCCCACTACC 60.179 60.000 21.03 8.26 44.81 3.18
4857 5465 0.179092 GGGTTCGATTCCCACTACCG 60.179 60.000 17.81 0.00 44.05 4.02
4858 5466 0.179092 GGTTCGATTCCCACTACCGG 60.179 60.000 0.00 0.00 0.00 5.28
4859 5467 0.808847 GTTCGATTCCCACTACCGGC 60.809 60.000 0.00 0.00 0.00 6.13
4860 5468 0.974010 TTCGATTCCCACTACCGGCT 60.974 55.000 0.00 0.00 0.00 5.52
4861 5469 1.067582 CGATTCCCACTACCGGCTC 59.932 63.158 0.00 0.00 0.00 4.70
4862 5470 1.446366 GATTCCCACTACCGGCTCC 59.554 63.158 0.00 0.00 0.00 4.70
4863 5471 1.306654 ATTCCCACTACCGGCTCCA 60.307 57.895 0.00 0.00 0.00 3.86
4864 5472 0.694444 ATTCCCACTACCGGCTCCAT 60.694 55.000 0.00 0.00 0.00 3.41
4865 5473 0.031917 TTCCCACTACCGGCTCCATA 60.032 55.000 0.00 0.00 0.00 2.74
4866 5474 0.757935 TCCCACTACCGGCTCCATAC 60.758 60.000 0.00 0.00 0.00 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.419858 AGGGATGTCCTGCTTGGG 58.580 61.111 0.00 0.00 46.07 4.12
58 59 5.221185 CCTCCTCGTCGGTATGATTTTTCTA 60.221 44.000 0.00 0.00 0.00 2.10
96 98 1.202879 GGGATGTGGTTGTGTGGAGAA 60.203 52.381 0.00 0.00 0.00 2.87
150 152 1.305219 GCGGGCTATGTTGTCTGCAA 61.305 55.000 0.00 0.00 42.91 4.08
152 154 2.813179 CGCGGGCTATGTTGTCTGC 61.813 63.158 0.00 0.00 40.26 4.26
198 200 0.044092 TGGTCTAGGAGCCAATGGGA 59.956 55.000 0.00 0.00 35.59 4.37
226 228 1.595929 GTTCGCAGTCAAACGGGGA 60.596 57.895 0.00 0.00 33.95 4.81
245 247 5.583495 CCTGAATAAGTTGTCCTAGTCTCG 58.417 45.833 0.00 0.00 0.00 4.04
249 251 5.189736 TCATGCCTGAATAAGTTGTCCTAGT 59.810 40.000 0.00 0.00 0.00 2.57
256 258 3.056952 GCGTCATGCCTGAATAAGTTG 57.943 47.619 0.00 0.00 37.76 3.16
293 295 3.256704 TGGTTAGGATTGAGGGAGTTGT 58.743 45.455 0.00 0.00 0.00 3.32
306 308 4.163458 AGTGTGTTCTCAGTTTGGTTAGGA 59.837 41.667 0.00 0.00 0.00 2.94
385 387 3.121019 CCGCTAGTTCCCTCTCCG 58.879 66.667 0.00 0.00 0.00 4.63
408 410 4.133796 GGTCCCTTTGCATGCCGC 62.134 66.667 16.68 0.00 42.89 6.53
476 481 3.051940 AGCAGATGTGGGAGGATTAGA 57.948 47.619 0.00 0.00 0.00 2.10
479 484 1.637553 ACAAGCAGATGTGGGAGGATT 59.362 47.619 0.00 0.00 30.82 3.01
496 501 0.953471 CCGAGCGGGATTTGTCACAA 60.953 55.000 0.00 0.00 38.47 3.33
653 658 0.034960 CCTCTCTCCTCGTCACTCCA 60.035 60.000 0.00 0.00 0.00 3.86
717 723 1.905843 AGCTCTCGTCAGTGTGCCT 60.906 57.895 0.00 0.00 32.68 4.75
766 778 1.770658 CATCAGCCCTATCCAACAGGA 59.229 52.381 0.00 0.00 34.91 3.86
949 972 0.166161 GACCGGCTCGCTTTTCTTTC 59.834 55.000 0.00 0.00 0.00 2.62
1777 1801 2.125310 CATTGCCTGGCCGTCGTA 60.125 61.111 17.53 0.00 0.00 3.43
1780 1804 3.056313 GAAGCATTGCCTGGCCGTC 62.056 63.158 17.53 4.54 0.00 4.79
1781 1805 3.064324 GAAGCATTGCCTGGCCGT 61.064 61.111 17.53 1.02 0.00 5.68
1782 1806 3.060020 CTGAAGCATTGCCTGGCCG 62.060 63.158 17.53 5.83 0.00 6.13
1830 1854 0.179034 CTCCATGCTTGGGAGTAGCC 60.179 60.000 17.95 0.00 45.59 3.93
1840 1864 3.312890 AGATACTACCTGCTCCATGCTT 58.687 45.455 0.00 0.00 43.37 3.91
1859 1883 7.671302 AGAAGAGAAATGTAAAGTGTGCTAGA 58.329 34.615 0.00 0.00 0.00 2.43
1872 2070 8.510505 GCTTTGTTCAGATAAGAAGAGAAATGT 58.489 33.333 0.00 0.00 0.00 2.71
1873 2071 8.509690 TGCTTTGTTCAGATAAGAAGAGAAATG 58.490 33.333 0.00 0.00 0.00 2.32
1874 2075 8.627208 TGCTTTGTTCAGATAAGAAGAGAAAT 57.373 30.769 0.00 0.00 0.00 2.17
1906 2113 6.753744 GCTGAATGGCGAGAAAATAAAAGATT 59.246 34.615 0.00 0.00 0.00 2.40
1907 2114 6.127647 TGCTGAATGGCGAGAAAATAAAAGAT 60.128 34.615 0.00 0.00 34.52 2.40
1908 2115 5.182950 TGCTGAATGGCGAGAAAATAAAAGA 59.817 36.000 0.00 0.00 34.52 2.52
1909 2116 5.401550 TGCTGAATGGCGAGAAAATAAAAG 58.598 37.500 0.00 0.00 34.52 2.27
1910 2117 5.384063 TGCTGAATGGCGAGAAAATAAAA 57.616 34.783 0.00 0.00 34.52 1.52
1911 2118 5.384063 TTGCTGAATGGCGAGAAAATAAA 57.616 34.783 0.00 0.00 34.52 1.40
1914 2121 3.507233 TCTTTGCTGAATGGCGAGAAAAT 59.493 39.130 0.00 0.00 34.52 1.82
1916 2123 2.226437 GTCTTTGCTGAATGGCGAGAAA 59.774 45.455 0.00 0.00 32.03 2.52
1918 2125 1.270785 TGTCTTTGCTGAATGGCGAGA 60.271 47.619 0.00 0.00 34.52 4.04
1919 2126 1.159285 TGTCTTTGCTGAATGGCGAG 58.841 50.000 0.00 0.00 34.52 5.03
1921 2128 1.401931 CCTTGTCTTTGCTGAATGGCG 60.402 52.381 0.00 0.00 34.52 5.69
1922 2129 1.888512 TCCTTGTCTTTGCTGAATGGC 59.111 47.619 0.00 0.00 0.00 4.40
1923 2130 4.491676 CATTCCTTGTCTTTGCTGAATGG 58.508 43.478 0.00 0.00 36.85 3.16
1931 2147 3.760151 TCCTGATGCATTCCTTGTCTTTG 59.240 43.478 0.00 0.00 0.00 2.77
1935 2151 4.205587 AGATTCCTGATGCATTCCTTGTC 58.794 43.478 0.00 0.00 0.00 3.18
1948 2164 3.483421 CAATGCCTGCATAGATTCCTGA 58.517 45.455 4.84 0.00 35.31 3.86
2084 2300 4.461081 AGCTCTAGAACGAACAGATGACTT 59.539 41.667 0.00 0.00 0.00 3.01
2085 2301 4.013728 AGCTCTAGAACGAACAGATGACT 58.986 43.478 0.00 0.00 0.00 3.41
2097 2313 1.737363 CGGCAAGTCCAGCTCTAGAAC 60.737 57.143 0.00 0.00 34.01 3.01
2098 2314 0.532573 CGGCAAGTCCAGCTCTAGAA 59.467 55.000 0.00 0.00 34.01 2.10
2099 2315 0.612174 ACGGCAAGTCCAGCTCTAGA 60.612 55.000 0.00 0.00 34.01 2.43
2100 2316 0.247736 AACGGCAAGTCCAGCTCTAG 59.752 55.000 0.00 0.00 34.01 2.43
2101 2317 0.685097 AAACGGCAAGTCCAGCTCTA 59.315 50.000 0.00 0.00 34.01 2.43
2102 2318 0.886490 CAAACGGCAAGTCCAGCTCT 60.886 55.000 0.00 0.00 34.01 4.09
2103 2319 1.576421 CAAACGGCAAGTCCAGCTC 59.424 57.895 0.00 0.00 34.01 4.09
2149 2366 2.494870 GCCATCTTCTGAAATGCTGGTT 59.505 45.455 0.00 0.00 0.00 3.67
2178 2395 3.120199 AGTGCCGTCAAATCGAAAATCAG 60.120 43.478 0.00 0.00 0.00 2.90
2183 2400 0.237235 GCAGTGCCGTCAAATCGAAA 59.763 50.000 2.85 0.00 0.00 3.46
2216 2433 5.932661 AGCTTATTCGCTTCTGAAAAGTTC 58.067 37.500 0.00 0.00 36.74 3.01
2274 2491 8.908678 GCATAAATTCAATACGAGTATACGACA 58.091 33.333 0.00 0.00 37.03 4.35
2275 2492 9.125906 AGCATAAATTCAATACGAGTATACGAC 57.874 33.333 0.00 0.00 37.03 4.34
2276 2493 9.338291 GAGCATAAATTCAATACGAGTATACGA 57.662 33.333 0.00 0.00 37.03 3.43
2277 2494 9.124807 TGAGCATAAATTCAATACGAGTATACG 57.875 33.333 0.00 0.00 39.31 3.06
2280 2497 8.499162 GCTTGAGCATAAATTCAATACGAGTAT 58.501 33.333 0.00 0.00 41.59 2.12
2281 2498 7.042051 GGCTTGAGCATAAATTCAATACGAGTA 60.042 37.037 5.24 0.00 44.36 2.59
2282 2499 6.238484 GGCTTGAGCATAAATTCAATACGAGT 60.238 38.462 5.24 0.00 44.36 4.18
2283 2500 6.138761 GGCTTGAGCATAAATTCAATACGAG 58.861 40.000 5.24 0.00 44.36 4.18
2284 2501 5.588246 TGGCTTGAGCATAAATTCAATACGA 59.412 36.000 5.24 0.00 44.36 3.43
2285 2502 5.820131 TGGCTTGAGCATAAATTCAATACG 58.180 37.500 5.24 0.00 44.36 3.06
2286 2503 5.689068 GCTGGCTTGAGCATAAATTCAATAC 59.311 40.000 5.24 0.00 44.36 1.89
2287 2504 5.595542 AGCTGGCTTGAGCATAAATTCAATA 59.404 36.000 5.24 0.00 44.36 1.90
2288 2505 4.404715 AGCTGGCTTGAGCATAAATTCAAT 59.595 37.500 5.24 0.00 44.36 2.57
2289 2506 3.765511 AGCTGGCTTGAGCATAAATTCAA 59.234 39.130 5.24 0.00 44.36 2.69
2290 2507 3.359033 AGCTGGCTTGAGCATAAATTCA 58.641 40.909 5.24 0.00 44.36 2.57
2291 2508 3.379372 TGAGCTGGCTTGAGCATAAATTC 59.621 43.478 5.24 0.00 44.36 2.17
2292 2509 3.359033 TGAGCTGGCTTGAGCATAAATT 58.641 40.909 5.24 0.00 44.36 1.82
2293 2510 3.008835 TGAGCTGGCTTGAGCATAAAT 57.991 42.857 5.24 0.00 44.36 1.40
2294 2511 2.495155 TGAGCTGGCTTGAGCATAAA 57.505 45.000 5.24 0.00 44.36 1.40
2295 2512 2.569059 GATGAGCTGGCTTGAGCATAA 58.431 47.619 5.24 0.00 44.36 1.90
2296 2513 1.202734 GGATGAGCTGGCTTGAGCATA 60.203 52.381 5.24 0.00 44.36 3.14
2297 2514 0.465824 GGATGAGCTGGCTTGAGCAT 60.466 55.000 5.24 0.00 44.36 3.79
2298 2515 1.077930 GGATGAGCTGGCTTGAGCA 60.078 57.895 5.24 0.00 44.36 4.26
2299 2516 0.679002 TTGGATGAGCTGGCTTGAGC 60.679 55.000 0.00 0.00 39.46 4.26
2300 2517 1.830279 TTTGGATGAGCTGGCTTGAG 58.170 50.000 0.00 0.00 0.00 3.02
2301 2518 2.165167 CTTTTGGATGAGCTGGCTTGA 58.835 47.619 0.00 0.00 0.00 3.02
2302 2519 1.891150 ACTTTTGGATGAGCTGGCTTG 59.109 47.619 0.00 0.00 0.00 4.01
2303 2520 2.165998 GACTTTTGGATGAGCTGGCTT 58.834 47.619 0.00 0.00 0.00 4.35
2304 2521 1.615384 GGACTTTTGGATGAGCTGGCT 60.615 52.381 0.00 0.00 0.00 4.75
2305 2522 0.813821 GGACTTTTGGATGAGCTGGC 59.186 55.000 0.00 0.00 0.00 4.85
2306 2523 1.089920 CGGACTTTTGGATGAGCTGG 58.910 55.000 0.00 0.00 0.00 4.85
2307 2524 2.099141 TCGGACTTTTGGATGAGCTG 57.901 50.000 0.00 0.00 0.00 4.24
2308 2525 2.039084 AGTTCGGACTTTTGGATGAGCT 59.961 45.455 0.00 0.00 29.87 4.09
2309 2526 2.160417 CAGTTCGGACTTTTGGATGAGC 59.840 50.000 0.00 0.00 32.54 4.26
2310 2527 3.664107 TCAGTTCGGACTTTTGGATGAG 58.336 45.455 0.00 0.00 32.54 2.90
2311 2528 3.762407 TCAGTTCGGACTTTTGGATGA 57.238 42.857 0.00 0.00 32.54 2.92
2312 2529 4.002982 TCATCAGTTCGGACTTTTGGATG 58.997 43.478 13.32 13.32 35.50 3.51
2313 2530 4.286297 TCATCAGTTCGGACTTTTGGAT 57.714 40.909 0.00 0.00 32.54 3.41
2314 2531 3.762407 TCATCAGTTCGGACTTTTGGA 57.238 42.857 0.00 0.00 32.54 3.53
2315 2532 5.376854 AATTCATCAGTTCGGACTTTTGG 57.623 39.130 0.00 0.00 32.54 3.28
2316 2533 7.746475 GTCTTAATTCATCAGTTCGGACTTTTG 59.254 37.037 0.00 0.00 32.54 2.44
2317 2534 7.360101 CGTCTTAATTCATCAGTTCGGACTTTT 60.360 37.037 0.00 0.00 32.54 2.27
2318 2535 6.090898 CGTCTTAATTCATCAGTTCGGACTTT 59.909 38.462 0.00 0.00 32.54 2.66
2319 2536 5.577164 CGTCTTAATTCATCAGTTCGGACTT 59.423 40.000 0.00 0.00 32.54 3.01
2320 2537 5.103000 CGTCTTAATTCATCAGTTCGGACT 58.897 41.667 0.00 0.00 36.25 3.85
2321 2538 4.267928 CCGTCTTAATTCATCAGTTCGGAC 59.732 45.833 0.00 0.00 36.97 4.79
2322 2539 4.430007 CCGTCTTAATTCATCAGTTCGGA 58.570 43.478 0.00 0.00 36.97 4.55
2323 2540 3.555956 CCCGTCTTAATTCATCAGTTCGG 59.444 47.826 0.00 0.00 35.02 4.30
2324 2541 3.001330 GCCCGTCTTAATTCATCAGTTCG 59.999 47.826 0.00 0.00 0.00 3.95
2325 2542 3.938963 TGCCCGTCTTAATTCATCAGTTC 59.061 43.478 0.00 0.00 0.00 3.01
2326 2543 3.950397 TGCCCGTCTTAATTCATCAGTT 58.050 40.909 0.00 0.00 0.00 3.16
2327 2544 3.627395 TGCCCGTCTTAATTCATCAGT 57.373 42.857 0.00 0.00 0.00 3.41
2328 2545 4.155826 TGTTTGCCCGTCTTAATTCATCAG 59.844 41.667 0.00 0.00 0.00 2.90
2329 2546 4.075682 TGTTTGCCCGTCTTAATTCATCA 58.924 39.130 0.00 0.00 0.00 3.07
2330 2547 4.156008 ACTGTTTGCCCGTCTTAATTCATC 59.844 41.667 0.00 0.00 0.00 2.92
2331 2548 4.079253 ACTGTTTGCCCGTCTTAATTCAT 58.921 39.130 0.00 0.00 0.00 2.57
2332 2549 3.482436 ACTGTTTGCCCGTCTTAATTCA 58.518 40.909 0.00 0.00 0.00 2.57
2333 2550 5.353123 TCATACTGTTTGCCCGTCTTAATTC 59.647 40.000 0.00 0.00 0.00 2.17
2334 2551 5.250200 TCATACTGTTTGCCCGTCTTAATT 58.750 37.500 0.00 0.00 0.00 1.40
2335 2552 4.839121 TCATACTGTTTGCCCGTCTTAAT 58.161 39.130 0.00 0.00 0.00 1.40
2336 2553 4.274602 TCATACTGTTTGCCCGTCTTAA 57.725 40.909 0.00 0.00 0.00 1.85
2337 2554 3.965379 TCATACTGTTTGCCCGTCTTA 57.035 42.857 0.00 0.00 0.00 2.10
2338 2555 2.851263 TCATACTGTTTGCCCGTCTT 57.149 45.000 0.00 0.00 0.00 3.01
2339 2556 2.851263 TTCATACTGTTTGCCCGTCT 57.149 45.000 0.00 0.00 0.00 4.18
2340 2557 3.003897 TGTTTTCATACTGTTTGCCCGTC 59.996 43.478 0.00 0.00 0.00 4.79
2341 2558 2.952978 TGTTTTCATACTGTTTGCCCGT 59.047 40.909 0.00 0.00 0.00 5.28
2342 2559 3.634568 TGTTTTCATACTGTTTGCCCG 57.365 42.857 0.00 0.00 0.00 6.13
2343 2560 3.740832 GCTTGTTTTCATACTGTTTGCCC 59.259 43.478 0.00 0.00 0.00 5.36
2344 2561 4.367450 TGCTTGTTTTCATACTGTTTGCC 58.633 39.130 0.00 0.00 0.00 4.52
2345 2562 5.748152 TCTTGCTTGTTTTCATACTGTTTGC 59.252 36.000 0.00 0.00 0.00 3.68
2346 2563 7.754069 TTCTTGCTTGTTTTCATACTGTTTG 57.246 32.000 0.00 0.00 0.00 2.93
2347 2564 8.034804 ACTTTCTTGCTTGTTTTCATACTGTTT 58.965 29.630 0.00 0.00 0.00 2.83
2348 2565 7.489113 CACTTTCTTGCTTGTTTTCATACTGTT 59.511 33.333 0.00 0.00 0.00 3.16
2349 2566 6.974622 CACTTTCTTGCTTGTTTTCATACTGT 59.025 34.615 0.00 0.00 0.00 3.55
2350 2567 7.195646 TCACTTTCTTGCTTGTTTTCATACTG 58.804 34.615 0.00 0.00 0.00 2.74
2351 2568 7.067494 ACTCACTTTCTTGCTTGTTTTCATACT 59.933 33.333 0.00 0.00 0.00 2.12
2352 2569 7.166473 CACTCACTTTCTTGCTTGTTTTCATAC 59.834 37.037 0.00 0.00 0.00 2.39
2353 2570 7.066887 TCACTCACTTTCTTGCTTGTTTTCATA 59.933 33.333 0.00 0.00 0.00 2.15
2354 2571 6.038356 CACTCACTTTCTTGCTTGTTTTCAT 58.962 36.000 0.00 0.00 0.00 2.57
2384 2601 3.876274 ATGCGCAATATATCCGACTCT 57.124 42.857 17.11 0.00 0.00 3.24
2391 2612 3.574284 TGCCCAAATGCGCAATATATC 57.426 42.857 17.11 3.43 30.46 1.63
2394 2615 1.965643 AGATGCCCAAATGCGCAATAT 59.034 42.857 17.11 0.00 38.75 1.28
2398 2619 0.966875 AGAAGATGCCCAAATGCGCA 60.967 50.000 14.96 14.96 39.79 6.09
2424 2778 5.185828 GGCAGTATTCCCTGAAAGAAATTGT 59.814 40.000 0.00 0.00 34.07 2.71
2425 2779 5.654497 GGCAGTATTCCCTGAAAGAAATTG 58.346 41.667 0.00 0.00 34.07 2.32
2427 2781 3.947834 CGGCAGTATTCCCTGAAAGAAAT 59.052 43.478 0.00 0.00 34.07 2.17
2430 2784 1.209504 CCGGCAGTATTCCCTGAAAGA 59.790 52.381 0.00 0.00 34.07 2.52
2536 2893 2.709213 AGATTCTTGTGCTGAAGCTCC 58.291 47.619 3.61 0.00 35.59 4.70
2589 2946 4.253352 TCATAAACAAGCAACGTATCGC 57.747 40.909 0.00 0.00 0.00 4.58
2662 3019 2.432510 GACCCAGAGTAGTGAATGGAGG 59.567 54.545 0.00 0.00 34.60 4.30
2697 3069 0.172803 ACTCTCGATACAACCGCACC 59.827 55.000 0.00 0.00 0.00 5.01
2739 3166 9.595823 GCTGGAAATACTACAGTAGTGATTTTA 57.404 33.333 21.71 13.82 39.81 1.52
2772 3346 8.028938 GGTGTATGAATCTTAGTTGTGCAAAAT 58.971 33.333 0.00 0.00 0.00 1.82
2775 3349 5.121611 CGGTGTATGAATCTTAGTTGTGCAA 59.878 40.000 0.00 0.00 0.00 4.08
2776 3350 4.629634 CGGTGTATGAATCTTAGTTGTGCA 59.370 41.667 0.00 0.00 0.00 4.57
2777 3351 4.630069 ACGGTGTATGAATCTTAGTTGTGC 59.370 41.667 0.00 0.00 0.00 4.57
2791 3365 8.696175 GTTTGGAAGAAAATAAAACGGTGTATG 58.304 33.333 0.00 0.00 0.00 2.39
2796 3375 7.778083 AGAAGTTTGGAAGAAAATAAAACGGT 58.222 30.769 0.00 0.00 36.19 4.83
2797 3376 8.642908 AAGAAGTTTGGAAGAAAATAAAACGG 57.357 30.769 0.00 0.00 36.19 4.44
2798 3377 9.296400 TGAAGAAGTTTGGAAGAAAATAAAACG 57.704 29.630 0.00 0.00 36.19 3.60
2826 3405 6.656693 AGGAACAATCATAAGAACTCACTTGG 59.343 38.462 0.00 0.00 0.00 3.61
2863 3456 9.086336 CAACTTACATTAATTGATGCCGAAAAT 57.914 29.630 9.96 0.00 0.00 1.82
2864 3457 8.300286 TCAACTTACATTAATTGATGCCGAAAA 58.700 29.630 9.96 0.00 0.00 2.29
2924 3520 7.011499 TGTTGCTCCCAGTTTAGAGTATTAA 57.989 36.000 0.00 0.00 32.47 1.40
2925 3521 6.212791 ACTGTTGCTCCCAGTTTAGAGTATTA 59.787 38.462 0.00 0.00 40.14 0.98
2970 3566 4.721776 TGAAGATACAGTATTCCCTTGGCT 59.278 41.667 0.00 0.00 0.00 4.75
3003 3599 2.579873 CTGTGGATTATCCTTGGGCTG 58.420 52.381 12.91 0.00 37.46 4.85
3072 3668 1.064654 GCCAATCCAAAGTCTGCGATC 59.935 52.381 0.00 0.00 0.00 3.69
3305 3902 7.176690 ACCAAAACTGAAAATATCGATCTTGGT 59.823 33.333 0.00 1.49 37.43 3.67
3341 3938 9.020731 GTTCCTTCTCCTGGTTATAATTTCAAA 57.979 33.333 0.00 0.00 0.00 2.69
3641 4238 2.128035 GTCGATATTTGAGGCCTGTCG 58.872 52.381 12.00 5.76 0.00 4.35
3659 4256 5.856455 CCTTGTTAACATGAAAATGACGGTC 59.144 40.000 20.00 0.00 0.00 4.79
3725 4322 4.766891 GGAGATGGTGATTCTGTTCCAAAA 59.233 41.667 0.00 0.00 33.55 2.44
3731 4328 2.575279 AGCTGGAGATGGTGATTCTGTT 59.425 45.455 0.00 0.00 0.00 3.16
3791 4388 6.297080 TCCGGTACTAGATTAGATCGAGAT 57.703 41.667 0.00 0.00 35.83 2.75
3793 4390 6.164876 TCTTCCGGTACTAGATTAGATCGAG 58.835 44.000 0.00 0.00 37.92 4.04
3794 4391 6.106648 TCTTCCGGTACTAGATTAGATCGA 57.893 41.667 0.00 0.00 0.00 3.59
3798 4395 5.699915 CGTCATCTTCCGGTACTAGATTAGA 59.300 44.000 0.00 0.00 0.00 2.10
3801 4398 4.205587 ACGTCATCTTCCGGTACTAGATT 58.794 43.478 0.00 0.00 0.00 2.40
3804 4401 4.996122 AGATACGTCATCTTCCGGTACTAG 59.004 45.833 0.00 0.00 41.49 2.57
3842 4439 6.014156 GTCACCTAGGATATGGCTCAGTAATT 60.014 42.308 17.98 0.00 0.00 1.40
3867 4464 6.489675 CCACTTCAAGAATCCAAATCGTATG 58.510 40.000 0.00 0.00 0.00 2.39
3875 4472 2.673775 TGGCCACTTCAAGAATCCAA 57.326 45.000 0.00 0.00 0.00 3.53
3889 4486 2.314246 TGACAAAACATGACATGGCCA 58.686 42.857 19.39 8.56 33.60 5.36
3902 4499 4.046286 ACTGGCCTCCATTATGACAAAA 57.954 40.909 3.32 0.00 30.82 2.44
3941 4539 5.592104 TTACAAGGCTCACGATGAAGATA 57.408 39.130 0.00 0.00 0.00 1.98
3942 4540 4.471904 TTACAAGGCTCACGATGAAGAT 57.528 40.909 0.00 0.00 0.00 2.40
3952 4554 8.486210 AGTAAGATACATTGATTACAAGGCTCA 58.514 33.333 0.00 0.00 40.78 4.26
3967 4569 5.136392 ACCCTCCAGACCTAGTAAGATACAT 59.864 44.000 0.00 0.00 0.00 2.29
3968 4570 4.481280 ACCCTCCAGACCTAGTAAGATACA 59.519 45.833 0.00 0.00 0.00 2.29
3969 4571 5.064314 ACCCTCCAGACCTAGTAAGATAC 57.936 47.826 0.00 0.00 0.00 2.24
3970 4572 5.745988 AACCCTCCAGACCTAGTAAGATA 57.254 43.478 0.00 0.00 0.00 1.98
3971 4573 4.628661 AACCCTCCAGACCTAGTAAGAT 57.371 45.455 0.00 0.00 0.00 2.40
3972 4574 4.415224 AAACCCTCCAGACCTAGTAAGA 57.585 45.455 0.00 0.00 0.00 2.10
3989 4591 9.916397 CGAGATACATTGATTTAACTGTAAACC 57.084 33.333 0.00 0.00 32.04 3.27
4134 4737 2.869801 TGTCCAGTTACGCTTTGTCAAG 59.130 45.455 0.00 0.00 0.00 3.02
4138 4741 1.414919 TCCTGTCCAGTTACGCTTTGT 59.585 47.619 0.00 0.00 0.00 2.83
4424 5027 3.623510 GGCTCGGAAGATAACCTGAAAAG 59.376 47.826 0.00 0.00 40.84 2.27
4428 5031 1.757118 CTGGCTCGGAAGATAACCTGA 59.243 52.381 0.00 0.00 40.84 3.86
4470 5073 2.395651 CTCCGTCGGAGTGAGTAGG 58.604 63.158 29.66 5.84 44.25 3.18
4532 5135 2.213499 GGTTGAAGATATCCCGTGCTG 58.787 52.381 0.00 0.00 0.00 4.41
4632 5237 5.538433 AGCCAAAGAGCCAATAACAAACTAA 59.462 36.000 0.00 0.00 0.00 2.24
4780 5388 9.871238 CCAAACTGCTCTATACTCTTAAACTAA 57.129 33.333 0.00 0.00 0.00 2.24
4781 5389 9.032624 ACCAAACTGCTCTATACTCTTAAACTA 57.967 33.333 0.00 0.00 0.00 2.24
4782 5390 7.908453 ACCAAACTGCTCTATACTCTTAAACT 58.092 34.615 0.00 0.00 0.00 2.66
4783 5391 9.303537 CTACCAAACTGCTCTATACTCTTAAAC 57.696 37.037 0.00 0.00 0.00 2.01
4784 5392 7.980099 GCTACCAAACTGCTCTATACTCTTAAA 59.020 37.037 0.00 0.00 0.00 1.52
4785 5393 7.342284 AGCTACCAAACTGCTCTATACTCTTAA 59.658 37.037 0.00 0.00 30.41 1.85
4786 5394 6.834451 AGCTACCAAACTGCTCTATACTCTTA 59.166 38.462 0.00 0.00 30.41 2.10
4787 5395 5.659079 AGCTACCAAACTGCTCTATACTCTT 59.341 40.000 0.00 0.00 30.41 2.85
4788 5396 5.205056 AGCTACCAAACTGCTCTATACTCT 58.795 41.667 0.00 0.00 30.41 3.24
4789 5397 5.523438 AGCTACCAAACTGCTCTATACTC 57.477 43.478 0.00 0.00 30.41 2.59
4790 5398 5.523438 GAGCTACCAAACTGCTCTATACT 57.477 43.478 6.92 0.00 46.69 2.12
4797 5405 3.878778 CCTTATGAGCTACCAAACTGCT 58.121 45.455 0.00 0.00 40.02 4.24
4798 5406 2.356069 GCCTTATGAGCTACCAAACTGC 59.644 50.000 0.00 0.00 0.00 4.40
4799 5407 3.873952 GAGCCTTATGAGCTACCAAACTG 59.126 47.826 0.00 0.00 41.75 3.16
4800 5408 3.519510 TGAGCCTTATGAGCTACCAAACT 59.480 43.478 0.00 0.00 41.75 2.66
4801 5409 3.873910 TGAGCCTTATGAGCTACCAAAC 58.126 45.455 0.00 0.00 41.75 2.93
4802 5410 4.778213 ATGAGCCTTATGAGCTACCAAA 57.222 40.909 0.00 0.00 41.75 3.28
4803 5411 5.454755 GGTTATGAGCCTTATGAGCTACCAA 60.455 44.000 0.00 0.00 41.75 3.67
4804 5412 4.040461 GGTTATGAGCCTTATGAGCTACCA 59.960 45.833 0.00 0.00 41.75 3.25
4805 5413 4.284746 AGGTTATGAGCCTTATGAGCTACC 59.715 45.833 0.00 0.00 41.75 3.18
4806 5414 5.476091 AGGTTATGAGCCTTATGAGCTAC 57.524 43.478 0.00 0.00 41.75 3.58
4807 5415 5.221722 CCAAGGTTATGAGCCTTATGAGCTA 60.222 44.000 0.00 0.00 43.87 3.32
4808 5416 4.445448 CCAAGGTTATGAGCCTTATGAGCT 60.445 45.833 0.00 0.00 43.87 4.09
4809 5417 3.817647 CCAAGGTTATGAGCCTTATGAGC 59.182 47.826 0.00 0.00 43.87 4.26
4810 5418 4.392940 CCCAAGGTTATGAGCCTTATGAG 58.607 47.826 0.00 0.00 43.87 2.90
4811 5419 3.138283 CCCCAAGGTTATGAGCCTTATGA 59.862 47.826 0.00 0.00 43.87 2.15
4812 5420 3.490348 CCCCAAGGTTATGAGCCTTATG 58.510 50.000 0.00 0.00 43.87 1.90
4813 5421 3.884037 CCCCAAGGTTATGAGCCTTAT 57.116 47.619 0.00 0.00 43.87 1.73
4826 5434 2.989253 GAACCCGCAACCCCAAGG 60.989 66.667 0.00 0.00 40.04 3.61
4827 5435 3.361977 CGAACCCGCAACCCCAAG 61.362 66.667 0.00 0.00 0.00 3.61
4828 5436 2.700407 AATCGAACCCGCAACCCCAA 62.700 55.000 0.00 0.00 35.37 4.12
4829 5437 3.198953 AATCGAACCCGCAACCCCA 62.199 57.895 0.00 0.00 35.37 4.96
4830 5438 2.360726 AATCGAACCCGCAACCCC 60.361 61.111 0.00 0.00 35.37 4.95
4831 5439 2.404186 GGAATCGAACCCGCAACCC 61.404 63.158 0.00 0.00 35.37 4.11
4832 5440 2.404186 GGGAATCGAACCCGCAACC 61.404 63.158 13.87 0.00 37.85 3.77
4833 5441 3.184206 GGGAATCGAACCCGCAAC 58.816 61.111 13.87 0.00 37.85 4.17
4838 5446 0.179092 CGGTAGTGGGAATCGAACCC 60.179 60.000 19.94 19.94 46.87 4.11
4839 5447 0.179092 CCGGTAGTGGGAATCGAACC 60.179 60.000 0.00 0.00 0.00 3.62
4840 5448 0.808847 GCCGGTAGTGGGAATCGAAC 60.809 60.000 1.90 0.00 0.00 3.95
4841 5449 0.974010 AGCCGGTAGTGGGAATCGAA 60.974 55.000 1.90 0.00 0.00 3.71
4842 5450 1.380785 AGCCGGTAGTGGGAATCGA 60.381 57.895 1.90 0.00 0.00 3.59
4843 5451 1.067582 GAGCCGGTAGTGGGAATCG 59.932 63.158 1.90 0.00 0.00 3.34
4844 5452 1.335132 TGGAGCCGGTAGTGGGAATC 61.335 60.000 1.90 0.00 0.00 2.52
4845 5453 0.694444 ATGGAGCCGGTAGTGGGAAT 60.694 55.000 1.90 0.00 0.00 3.01
4846 5454 0.031917 TATGGAGCCGGTAGTGGGAA 60.032 55.000 1.90 0.00 0.00 3.97
4847 5455 0.757935 GTATGGAGCCGGTAGTGGGA 60.758 60.000 1.90 0.00 0.00 4.37
4848 5456 1.746517 GTATGGAGCCGGTAGTGGG 59.253 63.158 1.90 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.