Multiple sequence alignment - TraesCS1D01G430000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G430000 chr1D 100.000 5323 0 0 1 5323 481369587 481364265 0.000000e+00 9830.0
1 TraesCS1D01G430000 chr1D 86.562 640 60 8 800 1418 481343994 481343360 0.000000e+00 682.0
2 TraesCS1D01G430000 chr1D 78.834 652 109 21 3770 4415 481341766 481341138 3.840000e-111 412.0
3 TraesCS1D01G430000 chr1D 78.462 585 85 22 1032 1599 481337790 481337230 1.420000e-90 344.0
4 TraesCS1D01G430000 chr1D 84.167 240 31 4 2941 3177 481336307 481336072 5.360000e-55 226.0
5 TraesCS1D01G430000 chr1D 90.000 90 9 0 3088 3177 471001712 471001801 3.370000e-22 117.0
6 TraesCS1D01G430000 chr1A 89.502 943 45 16 3655 4561 577827377 577826453 0.000000e+00 1144.0
7 TraesCS1D01G430000 chr1A 93.874 604 31 4 2833 3435 577828048 577827450 0.000000e+00 905.0
8 TraesCS1D01G430000 chr1A 83.719 995 105 28 1565 2535 577829394 577828433 0.000000e+00 887.0
9 TraesCS1D01G430000 chr1A 93.784 547 30 3 1 545 583763026 583763570 0.000000e+00 819.0
10 TraesCS1D01G430000 chr1A 90.524 496 32 6 1098 1580 577829907 577829414 4.490000e-180 641.0
11 TraesCS1D01G430000 chr1A 82.125 800 89 23 829 1599 577821990 577821216 2.090000e-178 636.0
12 TraesCS1D01G430000 chr1A 85.563 568 38 18 547 1098 577830485 577829946 6.020000e-154 555.0
13 TraesCS1D01G430000 chr1A 78.291 433 58 24 1032 1455 577776371 577775966 4.120000e-61 246.0
14 TraesCS1D01G430000 chr1A 88.832 197 17 3 2532 2723 577828346 577828150 2.480000e-58 237.0
15 TraesCS1D01G430000 chr1A 94.444 90 5 0 3088 3177 565294012 565294101 7.190000e-29 139.0
16 TraesCS1D01G430000 chr1A 97.436 39 1 0 1967 2005 577821151 577821113 3.440000e-07 67.6
17 TraesCS1D01G430000 chr2D 97.164 670 10 3 4661 5323 623312781 623312114 0.000000e+00 1123.0
18 TraesCS1D01G430000 chr2D 97.019 671 12 3 4660 5323 623319613 623318944 0.000000e+00 1122.0
19 TraesCS1D01G430000 chr2D 96.866 670 15 2 4660 5323 43961148 43960479 0.000000e+00 1116.0
20 TraesCS1D01G430000 chr2D 96.866 670 16 4 4659 5323 590747513 590746844 0.000000e+00 1116.0
21 TraesCS1D01G430000 chr2D 96.324 680 18 6 4650 5323 4532805 4532127 0.000000e+00 1110.0
22 TraesCS1D01G430000 chr2D 91.887 530 40 3 1 530 543048874 543048348 0.000000e+00 737.0
23 TraesCS1D01G430000 chr2D 100.000 28 0 0 3483 3510 188879190 188879217 1.000000e-02 52.8
24 TraesCS1D01G430000 chr7D 96.731 673 15 2 4658 5323 253922419 253923091 0.000000e+00 1114.0
25 TraesCS1D01G430000 chr7D 96.588 674 17 5 4655 5323 262726268 262725596 0.000000e+00 1112.0
26 TraesCS1D01G430000 chr7D 79.051 253 44 8 1631 1877 605481218 605481467 1.190000e-36 165.0
27 TraesCS1D01G430000 chr7D 91.803 61 4 1 4502 4561 418628204 418628144 3.420000e-12 84.2
28 TraesCS1D01G430000 chr7D 90.164 61 5 1 4502 4561 417939299 417939239 1.590000e-10 78.7
29 TraesCS1D01G430000 chr7D 88.525 61 6 1 4502 4561 418076519 418076459 7.390000e-09 73.1
30 TraesCS1D01G430000 chr6D 96.866 670 14 2 4661 5323 51489615 51490284 0.000000e+00 1114.0
31 TraesCS1D01G430000 chr3D 96.199 684 19 6 4646 5323 307251348 307250666 0.000000e+00 1112.0
32 TraesCS1D01G430000 chr3D 85.806 155 14 2 3504 3658 91710782 91710928 1.980000e-34 158.0
33 TraesCS1D01G430000 chr3D 86.992 123 11 5 3504 3621 409888466 409888588 3.340000e-27 134.0
34 TraesCS1D01G430000 chr3D 92.308 91 5 2 3088 3177 337974570 337974481 1.560000e-25 128.0
35 TraesCS1D01G430000 chr3D 86.916 107 13 1 3764 3869 308057685 308057579 9.370000e-23 119.0
36 TraesCS1D01G430000 chr3D 92.593 54 1 3 3617 3670 68383310 68383360 2.060000e-09 75.0
37 TraesCS1D01G430000 chr6A 94.972 537 24 2 1 535 591919405 591918870 0.000000e+00 839.0
38 TraesCS1D01G430000 chr6A 89.189 148 13 3 1727 1874 14213122 14212978 1.180000e-41 182.0
39 TraesCS1D01G430000 chr2A 94.649 542 26 2 1 540 389233179 389233719 0.000000e+00 837.0
40 TraesCS1D01G430000 chr2A 83.065 248 36 6 1631 1875 769641183 769641427 2.500000e-53 220.0
41 TraesCS1D01G430000 chr7A 94.610 538 26 2 1 536 158267830 158268366 0.000000e+00 830.0
42 TraesCS1D01G430000 chr7A 78.967 271 30 11 1630 1876 7431518 7431251 5.520000e-35 159.0
43 TraesCS1D01G430000 chr7A 82.803 157 24 3 3504 3658 697000224 697000069 2.590000e-28 137.0
44 TraesCS1D01G430000 chr7A 78.846 156 25 5 3504 3659 15844213 15844360 1.220000e-16 99.0
45 TraesCS1D01G430000 chr7A 96.970 33 0 1 3475 3506 348766160 348766192 3.000000e-03 54.7
46 TraesCS1D01G430000 chr3A 93.542 542 31 3 1 539 727594392 727593852 0.000000e+00 804.0
47 TraesCS1D01G430000 chr3A 92.308 91 5 2 3088 3177 455803753 455803664 1.560000e-25 128.0
48 TraesCS1D01G430000 chr3A 77.540 187 30 10 3481 3662 433550817 433550638 9.430000e-18 102.0
49 TraesCS1D01G430000 chr2B 88.448 554 53 7 4 551 670343717 670343169 0.000000e+00 658.0
50 TraesCS1D01G430000 chr4A 90.316 475 42 4 4 476 729599451 729598979 2.110000e-173 619.0
51 TraesCS1D01G430000 chr4A 87.405 524 57 4 13 530 564597937 564597417 1.280000e-165 593.0
52 TraesCS1D01G430000 chr4A 81.429 210 24 6 1629 1824 651777363 651777155 1.980000e-34 158.0
53 TraesCS1D01G430000 chr4A 90.517 116 11 0 3504 3619 405565326 405565211 2.570000e-33 154.0
54 TraesCS1D01G430000 chr1B 81.105 561 88 9 3770 4317 669729223 669728668 2.940000e-117 433.0
55 TraesCS1D01G430000 chr1B 80.233 516 70 14 1094 1599 669731061 669730568 5.070000e-95 359.0
56 TraesCS1D01G430000 chr1B 78.799 566 82 28 1032 1585 669713968 669713429 3.950000e-91 346.0
57 TraesCS1D01G430000 chr1B 84.426 244 38 0 3764 4007 669709796 669709553 1.920000e-59 241.0
58 TraesCS1D01G430000 chr1B 85.841 226 31 1 2952 3177 669710560 669710336 6.890000e-59 239.0
59 TraesCS1D01G430000 chr1B 89.005 191 18 3 908 1098 669731277 669731090 3.210000e-57 233.0
60 TraesCS1D01G430000 chr1B 91.111 90 8 0 3088 3177 654716364 654716453 7.240000e-24 122.0
61 TraesCS1D01G430000 chr6B 82.329 249 38 4 1626 1870 535628116 535627870 1.500000e-50 211.0
62 TraesCS1D01G430000 chr6B 83.226 155 18 1 3504 3658 598007666 598007520 9.300000e-28 135.0
63 TraesCS1D01G430000 chrUn 81.176 255 31 9 1631 1870 80091026 80090774 7.040000e-44 189.0
64 TraesCS1D01G430000 chr7B 79.528 254 26 12 1631 1870 674036098 674036339 1.980000e-34 158.0
65 TraesCS1D01G430000 chr5A 84.177 158 16 3 3504 3661 680971106 680971254 1.550000e-30 145.0
66 TraesCS1D01G430000 chr5A 82.581 155 17 7 3504 3658 546788017 546787873 1.560000e-25 128.0
67 TraesCS1D01G430000 chr5A 88.525 61 4 3 3619 3676 685968071 685968131 2.660000e-08 71.3
68 TraesCS1D01G430000 chr3B 84.722 144 13 4 3483 3621 552253680 552253541 9.300000e-28 135.0
69 TraesCS1D01G430000 chr3B 92.308 91 5 2 3088 3177 435959523 435959434 1.560000e-25 128.0
70 TraesCS1D01G430000 chr3B 83.088 136 21 2 3759 3892 413419264 413419399 7.240000e-24 122.0
71 TraesCS1D01G430000 chr4B 85.246 122 17 1 3504 3625 22860632 22860512 2.010000e-24 124.0
72 TraesCS1D01G430000 chr5B 94.118 51 3 0 3619 3669 454491614 454491564 1.590000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G430000 chr1D 481364265 481369587 5322 True 9830.000000 9830 100.000000 1 5323 1 chr1D.!!$R1 5322
1 TraesCS1D01G430000 chr1D 481336072 481343994 7922 True 416.000000 682 82.006250 800 4415 4 chr1D.!!$R2 3615
2 TraesCS1D01G430000 chr1A 583763026 583763570 544 False 819.000000 819 93.784000 1 545 1 chr1A.!!$F2 544
3 TraesCS1D01G430000 chr1A 577826453 577830485 4032 True 728.166667 1144 88.669000 547 4561 6 chr1A.!!$R3 4014
4 TraesCS1D01G430000 chr1A 577821113 577821990 877 True 351.800000 636 89.780500 829 2005 2 chr1A.!!$R2 1176
5 TraesCS1D01G430000 chr2D 623312114 623312781 667 True 1123.000000 1123 97.164000 4661 5323 1 chr2D.!!$R5 662
6 TraesCS1D01G430000 chr2D 623318944 623319613 669 True 1122.000000 1122 97.019000 4660 5323 1 chr2D.!!$R6 663
7 TraesCS1D01G430000 chr2D 43960479 43961148 669 True 1116.000000 1116 96.866000 4660 5323 1 chr2D.!!$R2 663
8 TraesCS1D01G430000 chr2D 590746844 590747513 669 True 1116.000000 1116 96.866000 4659 5323 1 chr2D.!!$R4 664
9 TraesCS1D01G430000 chr2D 4532127 4532805 678 True 1110.000000 1110 96.324000 4650 5323 1 chr2D.!!$R1 673
10 TraesCS1D01G430000 chr2D 543048348 543048874 526 True 737.000000 737 91.887000 1 530 1 chr2D.!!$R3 529
11 TraesCS1D01G430000 chr7D 253922419 253923091 672 False 1114.000000 1114 96.731000 4658 5323 1 chr7D.!!$F1 665
12 TraesCS1D01G430000 chr7D 262725596 262726268 672 True 1112.000000 1112 96.588000 4655 5323 1 chr7D.!!$R1 668
13 TraesCS1D01G430000 chr6D 51489615 51490284 669 False 1114.000000 1114 96.866000 4661 5323 1 chr6D.!!$F1 662
14 TraesCS1D01G430000 chr3D 307250666 307251348 682 True 1112.000000 1112 96.199000 4646 5323 1 chr3D.!!$R1 677
15 TraesCS1D01G430000 chr6A 591918870 591919405 535 True 839.000000 839 94.972000 1 535 1 chr6A.!!$R2 534
16 TraesCS1D01G430000 chr2A 389233179 389233719 540 False 837.000000 837 94.649000 1 540 1 chr2A.!!$F1 539
17 TraesCS1D01G430000 chr7A 158267830 158268366 536 False 830.000000 830 94.610000 1 536 1 chr7A.!!$F2 535
18 TraesCS1D01G430000 chr3A 727593852 727594392 540 True 804.000000 804 93.542000 1 539 1 chr3A.!!$R3 538
19 TraesCS1D01G430000 chr2B 670343169 670343717 548 True 658.000000 658 88.448000 4 551 1 chr2B.!!$R1 547
20 TraesCS1D01G430000 chr4A 564597417 564597937 520 True 593.000000 593 87.405000 13 530 1 chr4A.!!$R2 517
21 TraesCS1D01G430000 chr1B 669728668 669731277 2609 True 341.666667 433 83.447667 908 4317 3 chr1B.!!$R2 3409
22 TraesCS1D01G430000 chr1B 669709553 669713968 4415 True 275.333333 346 83.022000 1032 4007 3 chr1B.!!$R1 2975

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
871 893 0.317020 GTGCGAGCACACAAGTTTCC 60.317 55.0 21.73 0.0 45.53 3.13 F
2412 5271 0.179059 TGCAAAGTTCGGCAGAGACA 60.179 50.0 0.00 0.0 34.58 3.41 F
2624 5573 0.036732 TGAAAGATCAACCGCCAGCT 59.963 50.0 0.00 0.0 30.99 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2605 5554 0.036732 AGCTGGCGGTTGATCTTTCA 59.963 50.0 0.00 0.0 0.00 2.69 R
3451 6571 0.251698 TGCATGCCCCAATGAGTGAA 60.252 50.0 16.68 0.0 0.00 3.18 R
4533 8297 0.107081 CCCACGTGTCTGTTGGGTTA 59.893 55.0 15.65 0.0 35.18 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 1.067142 GTAGTCATGACAGGCAACCGA 60.067 52.381 27.02 0.00 37.17 4.69
178 181 4.452455 CGTAGCCAACTCAAAAGAACATCT 59.548 41.667 0.00 0.00 0.00 2.90
204 211 6.677781 ATGATGTGATAAACAACCTAACCG 57.322 37.500 0.00 0.00 43.61 4.44
344 351 0.921347 CTAGCGGTGAAAACGGATCG 59.079 55.000 0.00 0.00 0.00 3.69
361 368 3.807622 GGATCGTAATTTTGATGCTCCGA 59.192 43.478 4.54 0.00 31.11 4.55
530 538 3.991051 CGTGTGCTCCCTGGTCGT 61.991 66.667 0.00 0.00 0.00 4.34
540 548 3.028850 CTCCCTGGTCGTGTCCTATAAA 58.971 50.000 0.00 0.00 0.00 1.40
545 553 7.011994 TCCCTGGTCGTGTCCTATAAATATAA 58.988 38.462 0.00 0.00 0.00 0.98
619 635 0.606944 TACCAACCCCATCAACGTGC 60.607 55.000 0.00 0.00 0.00 5.34
620 636 2.560861 CAACCCCATCAACGTGCG 59.439 61.111 0.00 0.00 0.00 5.34
647 663 2.163010 ACAGGGAGTGTATTCGTGTACG 59.837 50.000 0.00 0.00 37.75 3.67
648 664 2.163010 CAGGGAGTGTATTCGTGTACGT 59.837 50.000 4.20 0.00 40.80 3.57
649 665 2.163010 AGGGAGTGTATTCGTGTACGTG 59.837 50.000 0.00 0.00 40.80 4.49
650 666 2.095059 GGGAGTGTATTCGTGTACGTGT 60.095 50.000 0.00 0.00 40.80 4.49
651 667 3.126858 GGGAGTGTATTCGTGTACGTGTA 59.873 47.826 0.00 0.00 40.80 2.90
652 668 4.091424 GGAGTGTATTCGTGTACGTGTAC 58.909 47.826 0.00 3.21 40.80 2.90
653 669 4.083581 AGTGTATTCGTGTACGTGTACC 57.916 45.455 0.00 0.00 40.80 3.34
654 670 2.840176 GTGTATTCGTGTACGTGTACCG 59.160 50.000 0.00 10.20 44.03 4.02
657 673 2.470801 TTCGTGTACGTGTACCGCCC 62.471 60.000 0.00 0.00 41.42 6.13
662 678 0.665972 GTACGTGTACCGCCCGAAAA 60.666 55.000 0.00 0.00 41.42 2.29
665 681 1.570967 GTGTACCGCCCGAAAACAC 59.429 57.895 0.00 0.00 34.30 3.32
666 682 1.955157 TGTACCGCCCGAAAACACG 60.955 57.895 0.00 0.00 0.00 4.49
764 780 1.930251 GATCGATCATCCTCCCTCCA 58.070 55.000 20.52 0.00 0.00 3.86
767 783 3.765432 TCGATCATCCTCCCTCCATAT 57.235 47.619 0.00 0.00 0.00 1.78
768 784 3.636679 TCGATCATCCTCCCTCCATATC 58.363 50.000 0.00 0.00 0.00 1.63
769 785 2.697751 CGATCATCCTCCCTCCATATCC 59.302 54.545 0.00 0.00 0.00 2.59
770 786 2.649742 TCATCCTCCCTCCATATCCC 57.350 55.000 0.00 0.00 0.00 3.85
771 787 1.198713 CATCCTCCCTCCATATCCCG 58.801 60.000 0.00 0.00 0.00 5.14
772 788 0.793617 ATCCTCCCTCCATATCCCGT 59.206 55.000 0.00 0.00 0.00 5.28
773 789 1.463531 TCCTCCCTCCATATCCCGTA 58.536 55.000 0.00 0.00 0.00 4.02
774 790 1.076677 TCCTCCCTCCATATCCCGTAC 59.923 57.143 0.00 0.00 0.00 3.67
775 791 1.174783 CTCCCTCCATATCCCGTACG 58.825 60.000 8.69 8.69 0.00 3.67
776 792 0.773014 TCCCTCCATATCCCGTACGA 59.227 55.000 18.76 0.00 0.00 3.43
777 793 1.145531 TCCCTCCATATCCCGTACGAA 59.854 52.381 18.76 4.64 0.00 3.85
778 794 1.965643 CCCTCCATATCCCGTACGAAA 59.034 52.381 18.76 4.22 0.00 3.46
779 795 2.366266 CCCTCCATATCCCGTACGAAAA 59.634 50.000 18.76 1.35 0.00 2.29
780 796 3.007614 CCCTCCATATCCCGTACGAAAAT 59.992 47.826 18.76 9.35 0.00 1.82
781 797 4.221262 CCCTCCATATCCCGTACGAAAATA 59.779 45.833 18.76 11.26 0.00 1.40
782 798 5.166398 CCTCCATATCCCGTACGAAAATAC 58.834 45.833 18.76 0.00 0.00 1.89
783 799 5.047519 CCTCCATATCCCGTACGAAAATACT 60.048 44.000 18.76 0.00 0.00 2.12
784 800 5.775686 TCCATATCCCGTACGAAAATACTG 58.224 41.667 18.76 10.39 0.00 2.74
791 807 3.060363 CCGTACGAAAATACTGTGCTCAC 59.940 47.826 18.76 0.00 0.00 3.51
795 811 4.072131 ACGAAAATACTGTGCTCACCAAT 58.928 39.130 0.00 0.00 0.00 3.16
797 813 4.083324 CGAAAATACTGTGCTCACCAATGT 60.083 41.667 0.00 0.00 0.00 2.71
823 839 4.159879 AGGCTAATTCAAGCACGTACTACT 59.840 41.667 2.76 0.00 44.64 2.57
825 841 5.458126 GGCTAATTCAAGCACGTACTACTAC 59.542 44.000 2.76 0.00 44.64 2.73
871 893 0.317020 GTGCGAGCACACAAGTTTCC 60.317 55.000 21.73 0.00 45.53 3.13
882 904 3.031013 CACAAGTTTCCTCCCAAAGGTT 58.969 45.455 0.00 0.00 46.32 3.50
889 911 1.626825 TCCTCCCAAAGGTTAAGGTCG 59.373 52.381 0.00 0.00 46.32 4.79
906 928 3.442977 AGGTCGTAGTCGTATCTTGCTTT 59.557 43.478 0.00 0.00 38.33 3.51
907 929 3.546670 GGTCGTAGTCGTATCTTGCTTTG 59.453 47.826 0.00 0.00 38.33 2.77
908 930 3.000971 GTCGTAGTCGTATCTTGCTTTGC 60.001 47.826 0.00 0.00 38.33 3.68
909 931 2.921121 CGTAGTCGTATCTTGCTTTGCA 59.079 45.455 0.00 0.00 36.47 4.08
932 957 2.650778 CCAAAGGGGCAAAGACGC 59.349 61.111 0.00 0.00 0.00 5.19
933 958 2.199652 CCAAAGGGGCAAAGACGCA 61.200 57.895 0.00 0.00 0.00 5.24
935 960 0.318120 CAAAGGGGCAAAGACGCATT 59.682 50.000 0.00 0.00 0.00 3.56
936 961 1.047801 AAAGGGGCAAAGACGCATTT 58.952 45.000 0.00 0.00 32.56 2.32
937 962 1.047801 AAGGGGCAAAGACGCATTTT 58.952 45.000 0.00 0.00 0.00 1.82
938 963 0.318120 AGGGGCAAAGACGCATTTTG 59.682 50.000 3.35 3.35 38.30 2.44
958 983 1.598130 GCACCTCAGTTGAACGCCT 60.598 57.895 0.00 0.00 0.00 5.52
1057 1089 2.437180 CCGGATCAGCAGCAGCAA 60.437 61.111 3.17 0.00 45.49 3.91
1116 1190 2.035961 CCACGTCTTCTTCCAGAGTCAA 59.964 50.000 0.00 0.00 0.00 3.18
1119 1193 3.574396 ACGTCTTCTTCCAGAGTCAATCA 59.426 43.478 0.00 0.00 0.00 2.57
1122 1196 3.580022 TCTTCTTCCAGAGTCAATCAGCA 59.420 43.478 0.00 0.00 0.00 4.41
1188 1262 1.084370 GCATCACCGACTACCTGCAC 61.084 60.000 0.00 0.00 0.00 4.57
1229 1303 4.988598 CGCCAAGCACCTGGACGT 62.989 66.667 0.00 0.00 38.96 4.34
1230 1304 2.345991 GCCAAGCACCTGGACGTA 59.654 61.111 0.00 0.00 38.96 3.57
1259 1339 1.434622 TACCCGACGATGAGAGACGC 61.435 60.000 0.00 0.00 0.00 5.19
1378 1464 0.772384 GGAGGAGGGAGACGAGGATA 59.228 60.000 0.00 0.00 0.00 2.59
1422 1512 2.096819 CAGGTACGTGCGCCATTTTATT 59.903 45.455 4.18 0.00 0.00 1.40
1430 1520 3.568007 GTGCGCCATTTTATTAGGATGGA 59.432 43.478 4.18 0.00 42.31 3.41
1431 1521 4.218417 GTGCGCCATTTTATTAGGATGGAT 59.782 41.667 4.18 0.00 42.31 3.41
1527 1625 1.064357 TCACATGCGTGCATATGCTTG 59.936 47.619 27.13 19.67 44.88 4.01
1536 1634 3.362986 CGTGCATATGCTTGGTCGAATAC 60.363 47.826 27.13 12.39 42.66 1.89
1640 1784 1.946768 CGCTCTGAACCAAGGTTTTGA 59.053 47.619 5.87 6.78 38.60 2.69
1641 1785 2.357637 CGCTCTGAACCAAGGTTTTGAA 59.642 45.455 5.87 0.00 38.60 2.69
1646 1797 4.517453 TCTGAACCAAGGTTTTGAATACCG 59.483 41.667 5.87 0.00 40.69 4.02
1649 1800 3.418047 ACCAAGGTTTTGAATACCGAGG 58.582 45.455 13.71 13.71 40.69 4.63
1651 1802 4.041938 ACCAAGGTTTTGAATACCGAGGTA 59.958 41.667 17.39 4.27 42.19 3.08
1699 1851 1.105457 CTCGGATACCACGGTTACCA 58.895 55.000 1.13 0.00 0.00 3.25
1700 1852 0.817013 TCGGATACCACGGTTACCAC 59.183 55.000 1.13 0.00 0.00 4.16
1706 1858 1.799544 ACCACGGTTACCACGAAATC 58.200 50.000 1.13 0.00 34.93 2.17
1708 1860 1.081094 CACGGTTACCACGAAATCCC 58.919 55.000 1.13 0.00 34.93 3.85
1709 1861 0.390209 ACGGTTACCACGAAATCCCG 60.390 55.000 1.13 0.00 39.75 5.14
1710 1862 1.698714 CGGTTACCACGAAATCCCGC 61.699 60.000 1.13 0.00 0.00 6.13
1712 1864 2.101835 TTACCACGAAATCCCGCGC 61.102 57.895 0.00 0.00 0.00 6.86
1714 1866 3.864686 CCACGAAATCCCGCGCAG 61.865 66.667 8.75 0.00 0.00 5.18
1720 1889 0.316196 GAAATCCCGCGCAGATTTCG 60.316 55.000 30.98 7.93 45.62 3.46
1723 1892 3.564027 CCCGCGCAGATTTCGGAC 61.564 66.667 8.75 0.00 45.53 4.79
1726 1895 2.230940 CGCGCAGATTTCGGACGAT 61.231 57.895 8.75 0.00 0.00 3.73
1729 1898 1.591158 GCGCAGATTTCGGACGATTTA 59.409 47.619 0.30 0.00 0.00 1.40
1736 1905 6.073548 GCAGATTTCGGACGATTTATGAATCT 60.074 38.462 8.42 9.85 39.61 2.40
1755 1924 9.781633 ATGAATCTGAACAAATTTCATCCAAAA 57.218 25.926 0.00 0.00 33.00 2.44
1756 1925 9.781633 TGAATCTGAACAAATTTCATCCAAAAT 57.218 25.926 0.00 0.00 0.00 1.82
1759 1928 9.781633 ATCTGAACAAATTTCATCCAAAATTGA 57.218 25.926 2.64 0.00 37.12 2.57
1760 1929 9.781633 TCTGAACAAATTTCATCCAAAATTGAT 57.218 25.926 2.64 0.00 37.12 2.57
1807 1976 4.789012 TTGCATGGGAAGTTGATTTCTC 57.211 40.909 0.00 0.00 0.00 2.87
1808 1977 2.749076 TGCATGGGAAGTTGATTTCTCG 59.251 45.455 0.00 0.00 29.85 4.04
1810 1979 3.426695 GCATGGGAAGTTGATTTCTCGTG 60.427 47.826 4.48 4.48 44.05 4.35
1824 1993 0.909623 CTCGTGGGGTACTGGGAAAT 59.090 55.000 0.00 0.00 0.00 2.17
1828 1997 1.453197 GGGGTACTGGGAAATGCGG 60.453 63.158 0.00 0.00 0.00 5.69
1832 2001 2.490991 GGTACTGGGAAATGCGGATAC 58.509 52.381 0.00 0.00 0.00 2.24
1833 2002 2.490991 GTACTGGGAAATGCGGATACC 58.509 52.381 0.00 0.00 0.00 2.73
1834 2003 0.916086 ACTGGGAAATGCGGATACCA 59.084 50.000 13.19 10.40 0.00 3.25
1835 2004 1.597742 CTGGGAAATGCGGATACCAG 58.402 55.000 16.70 16.70 39.45 4.00
1836 2005 0.182537 TGGGAAATGCGGATACCAGG 59.817 55.000 13.19 0.00 0.00 4.45
1837 2006 1.172812 GGGAAATGCGGATACCAGGC 61.173 60.000 13.19 0.00 0.00 4.85
1838 2007 1.507141 GGAAATGCGGATACCAGGCG 61.507 60.000 7.88 0.00 0.00 5.52
1839 2008 1.507141 GAAATGCGGATACCAGGCGG 61.507 60.000 0.00 0.00 38.77 6.13
1857 2026 0.883370 GGTATCCGAATTGTCCGGGC 60.883 60.000 0.00 0.00 46.47 6.13
1884 2053 1.599071 CAAAACTCTGCTCTGAACGCA 59.401 47.619 0.00 0.00 35.80 5.24
1927 2096 1.389555 ATCGCGTGAGGTGAGATGTA 58.610 50.000 5.77 0.00 38.83 2.29
1954 2123 1.143073 GGGATTTAGGGTTCGCCATCT 59.857 52.381 0.00 0.00 39.65 2.90
1975 2156 3.775316 CTGTCAACTTCCCACCTACCTAT 59.225 47.826 0.00 0.00 0.00 2.57
2005 2186 9.753674 TCCAAACAAACAAATCTTATCCTATCT 57.246 29.630 0.00 0.00 0.00 1.98
2013 2194 8.798975 ACAAATCTTATCCTATCTGTTCCCTA 57.201 34.615 0.00 0.00 0.00 3.53
2030 2583 4.371681 TCCCTAGGTAGCAAAGGAAGAAT 58.628 43.478 8.29 0.00 31.64 2.40
2031 2584 5.535029 TCCCTAGGTAGCAAAGGAAGAATA 58.465 41.667 8.29 0.00 31.64 1.75
2032 2585 6.151049 TCCCTAGGTAGCAAAGGAAGAATAT 58.849 40.000 8.29 0.00 31.64 1.28
2044 2597 2.880890 GGAAGAATATGCCGCTCAATGT 59.119 45.455 0.00 0.00 0.00 2.71
2071 2624 2.937591 ACTTGCAATGATTGAACAGCG 58.062 42.857 9.76 0.00 0.00 5.18
2123 4978 6.385649 TCTTGTTTAGTTCCATGTTGTTCC 57.614 37.500 0.00 0.00 0.00 3.62
2155 5011 6.314152 GGCGAAAGTTCTTAGCTCTTCTTAAT 59.686 38.462 0.00 0.00 0.00 1.40
2198 5054 1.887854 TGATTGATGGGTGTTGCTGTG 59.112 47.619 0.00 0.00 0.00 3.66
2224 5080 6.148480 GCTGATTGTTATCACCTAGCTTATGG 59.852 42.308 0.00 0.00 35.87 2.74
2244 5100 4.394729 TGGTTTTCCTCGCACTATCTTTT 58.605 39.130 0.00 0.00 41.38 2.27
2272 5128 9.519191 TCATCATAACAGAGAAGGAAATTTTGA 57.481 29.630 0.00 0.00 0.00 2.69
2298 5154 1.702182 TGAGCTAGCTCAGATGGAGG 58.298 55.000 37.64 0.00 46.80 4.30
2315 5171 0.615850 AGGGCTCCTACTTGTGCTTC 59.384 55.000 0.00 0.00 28.47 3.86
2345 5201 1.003580 TGAGCATCCAGTTCTTGTCCC 59.996 52.381 0.00 0.00 0.00 4.46
2372 5231 0.608035 TCAACCAGGCATCCCGTTTC 60.608 55.000 0.00 0.00 35.76 2.78
2382 5241 5.715630 AGGCATCCCGTTTCCATTAATTGG 61.716 45.833 0.00 0.00 40.90 3.16
2404 5263 2.415697 AACGGAAATGCAAAGTTCGG 57.584 45.000 11.64 11.64 0.00 4.30
2412 5271 0.179059 TGCAAAGTTCGGCAGAGACA 60.179 50.000 0.00 0.00 34.58 3.41
2414 5273 2.289382 TGCAAAGTTCGGCAGAGACATA 60.289 45.455 0.00 0.00 34.58 2.29
2425 5284 2.675348 GCAGAGACATACAAGCAAGACC 59.325 50.000 0.00 0.00 0.00 3.85
2430 5289 3.327757 AGACATACAAGCAAGACCAGGAA 59.672 43.478 0.00 0.00 0.00 3.36
2434 5293 1.163554 CAAGCAAGACCAGGAAGAGC 58.836 55.000 0.00 0.00 0.00 4.09
2456 5315 2.990066 AATAGAGGGAAGCGAGTTGG 57.010 50.000 0.00 0.00 0.00 3.77
2470 5329 2.416547 CGAGTTGGTGCATTACAAGGAG 59.583 50.000 0.00 0.00 0.00 3.69
2503 5362 6.745200 GGGTGCTCGATATCGAAACACTCA 62.745 50.000 35.48 22.26 46.53 3.41
2526 5385 1.805428 CGGGGACAAAAACCAGGCAG 61.805 60.000 0.00 0.00 0.00 4.85
2538 5487 1.163554 CCAGGCAGCAGAAAGTCTTC 58.836 55.000 0.00 0.00 0.00 2.87
2545 5494 3.120269 GCAGCAGAAAGTCTTCACATGAG 60.120 47.826 0.00 0.00 33.64 2.90
2553 5502 6.464892 AGAAAGTCTTCACATGAGGATCAACA 60.465 38.462 0.00 0.00 40.84 3.33
2587 5536 3.226777 TCACATAACCCACACCCAAAAG 58.773 45.455 0.00 0.00 0.00 2.27
2595 5544 0.588252 CACACCCAAAAGAGTGCGAG 59.412 55.000 0.00 0.00 37.51 5.03
2605 5554 1.859302 AGAGTGCGAGAGGGAGAAAT 58.141 50.000 0.00 0.00 0.00 2.17
2618 5567 4.265073 AGGGAGAAATGAAAGATCAACCG 58.735 43.478 0.00 0.00 39.49 4.44
2624 5573 0.036732 TGAAAGATCAACCGCCAGCT 59.963 50.000 0.00 0.00 30.99 4.24
2650 5604 4.960866 CACACCCAGCAGCTGCCA 62.961 66.667 34.39 0.00 43.38 4.92
2657 5611 1.900016 CAGCAGCTGCCAGGTTCAA 60.900 57.895 34.39 0.00 43.38 2.69
2658 5612 1.900498 AGCAGCTGCCAGGTTCAAC 60.900 57.895 34.39 3.66 43.38 3.18
2661 5615 0.820891 CAGCTGCCAGGTTCAACTGT 60.821 55.000 0.00 0.00 36.75 3.55
2677 5631 2.279120 GTCGAGCGAGCATCCCAG 60.279 66.667 0.00 0.00 0.00 4.45
2697 5651 1.081175 CTCGTTCAGCAGCACTCGA 60.081 57.895 0.00 0.00 0.00 4.04
2715 5669 0.476771 GAACCCCTCCTTGGAACACA 59.523 55.000 0.00 0.00 39.29 3.72
2727 5681 1.217882 GGAACACATCCTTATCCGCG 58.782 55.000 0.00 0.00 45.56 6.46
2728 5682 0.582005 GAACACATCCTTATCCGCGC 59.418 55.000 0.00 0.00 0.00 6.86
2729 5683 0.814010 AACACATCCTTATCCGCGCC 60.814 55.000 0.00 0.00 0.00 6.53
2730 5684 1.069765 CACATCCTTATCCGCGCCT 59.930 57.895 0.00 0.00 0.00 5.52
2731 5685 0.532862 CACATCCTTATCCGCGCCTT 60.533 55.000 0.00 0.00 0.00 4.35
2732 5686 0.180406 ACATCCTTATCCGCGCCTTT 59.820 50.000 0.00 0.00 0.00 3.11
2733 5687 0.588252 CATCCTTATCCGCGCCTTTG 59.412 55.000 0.00 0.00 0.00 2.77
2734 5688 0.468226 ATCCTTATCCGCGCCTTTGA 59.532 50.000 0.00 0.00 0.00 2.69
2735 5689 0.179084 TCCTTATCCGCGCCTTTGAG 60.179 55.000 0.00 0.00 0.00 3.02
2736 5690 0.462047 CCTTATCCGCGCCTTTGAGT 60.462 55.000 0.00 0.00 0.00 3.41
2737 5691 1.202486 CCTTATCCGCGCCTTTGAGTA 60.202 52.381 0.00 0.00 0.00 2.59
2738 5692 2.548067 CCTTATCCGCGCCTTTGAGTAT 60.548 50.000 0.00 0.00 0.00 2.12
2739 5693 3.305813 CCTTATCCGCGCCTTTGAGTATA 60.306 47.826 0.00 0.00 0.00 1.47
2740 5694 2.440539 ATCCGCGCCTTTGAGTATAG 57.559 50.000 0.00 0.00 0.00 1.31
2741 5695 1.395635 TCCGCGCCTTTGAGTATAGA 58.604 50.000 0.00 0.00 0.00 1.98
2742 5696 1.066605 TCCGCGCCTTTGAGTATAGAC 59.933 52.381 0.00 0.00 0.00 2.59
2743 5697 1.488527 CGCGCCTTTGAGTATAGACC 58.511 55.000 0.00 0.00 0.00 3.85
2744 5698 1.067212 CGCGCCTTTGAGTATAGACCT 59.933 52.381 0.00 0.00 0.00 3.85
2745 5699 2.474816 GCGCCTTTGAGTATAGACCTG 58.525 52.381 0.00 0.00 0.00 4.00
2746 5700 2.474816 CGCCTTTGAGTATAGACCTGC 58.525 52.381 0.00 0.00 0.00 4.85
2747 5701 2.803492 CGCCTTTGAGTATAGACCTGCC 60.803 54.545 0.00 0.00 0.00 4.85
2748 5702 2.485657 GCCTTTGAGTATAGACCTGCCC 60.486 54.545 0.00 0.00 0.00 5.36
2749 5703 2.771943 CCTTTGAGTATAGACCTGCCCA 59.228 50.000 0.00 0.00 0.00 5.36
2750 5704 3.199946 CCTTTGAGTATAGACCTGCCCAA 59.800 47.826 0.00 0.00 0.00 4.12
2751 5705 4.141390 CCTTTGAGTATAGACCTGCCCAAT 60.141 45.833 0.00 0.00 0.00 3.16
2752 5706 5.071788 CCTTTGAGTATAGACCTGCCCAATA 59.928 44.000 0.00 0.00 0.00 1.90
2753 5707 5.546621 TTGAGTATAGACCTGCCCAATAC 57.453 43.478 0.00 0.00 0.00 1.89
2754 5708 4.552674 TGAGTATAGACCTGCCCAATACA 58.447 43.478 0.00 0.00 0.00 2.29
2788 5742 5.675538 ACAAACTATGAAGATAGCCTCCAC 58.324 41.667 0.00 0.00 35.79 4.02
2809 5763 2.191128 GGAGATTGCACAACTCCACT 57.809 50.000 20.95 0.00 46.42 4.00
2831 5785 0.891904 TTGTCCCCCGCTTGCTTAAC 60.892 55.000 0.00 0.00 0.00 2.01
2839 5793 1.250476 CGCTTGCTTAACGATGCAAC 58.750 50.000 0.00 0.00 43.17 4.17
2845 5799 5.516339 GCTTGCTTAACGATGCAACAATTAT 59.484 36.000 0.00 0.00 43.17 1.28
2870 5853 9.620259 ATTACTGACCAATAAAAAGAGAGGATC 57.380 33.333 0.00 0.00 0.00 3.36
2891 5874 7.181845 AGGATCTTATGTCAGAAAAGAAGTCCT 59.818 37.037 9.60 9.60 35.42 3.85
2892 5875 8.478877 GGATCTTATGTCAGAAAAGAAGTCCTA 58.521 37.037 0.00 0.00 33.26 2.94
2893 5876 9.528018 GATCTTATGTCAGAAAAGAAGTCCTAG 57.472 37.037 0.00 0.00 33.26 3.02
3012 5995 1.001293 TGTGCTGATCCACTGACTGAC 59.999 52.381 4.12 0.00 36.68 3.51
3034 6017 2.874849 CAGGAGCGAGAAGAAGAAGAC 58.125 52.381 0.00 0.00 0.00 3.01
3208 6191 6.753744 GGACATGCACATCTTTTCTTATTTCC 59.246 38.462 0.00 0.00 0.00 3.13
3250 6233 6.999950 TGGTATATATTGCAGTAACCGTCAT 58.000 36.000 4.65 0.00 0.00 3.06
3251 6234 8.124808 TGGTATATATTGCAGTAACCGTCATA 57.875 34.615 4.65 0.00 0.00 2.15
3353 6470 5.046591 TCGTGAATTCTACAGGGAAGATTGT 60.047 40.000 7.05 0.00 0.00 2.71
3369 6486 0.451957 TTGTACAGCGCGCAAAATCG 60.452 50.000 35.10 15.81 0.00 3.34
3373 6490 3.047280 AGCGCGCAAAATCGACCA 61.047 55.556 35.10 0.00 0.00 4.02
3376 6493 1.509787 CGCGCAAAATCGACCACAG 60.510 57.895 8.75 0.00 0.00 3.66
3409 6526 3.864686 CCCGGCGCGTTCATCAAG 61.865 66.667 8.43 0.00 0.00 3.02
3414 6531 1.286501 GGCGCGTTCATCAAGTATCA 58.713 50.000 8.43 0.00 0.00 2.15
3422 6539 5.063944 GCGTTCATCAAGTATCATGTTCACT 59.936 40.000 0.00 0.00 0.00 3.41
3462 6582 8.519492 AAATAAAAATCGTGTTCACTCATTGG 57.481 30.769 1.53 0.00 0.00 3.16
3464 6584 2.113860 ATCGTGTTCACTCATTGGGG 57.886 50.000 1.53 0.00 0.00 4.96
3465 6585 0.605319 TCGTGTTCACTCATTGGGGC 60.605 55.000 1.53 0.00 0.00 5.80
3474 6594 3.074242 TCACTCATTGGGGCATGCATATA 59.926 43.478 21.36 1.87 0.00 0.86
3477 6597 5.066893 CACTCATTGGGGCATGCATATATAC 59.933 44.000 21.36 0.00 0.00 1.47
3478 6598 4.198530 TCATTGGGGCATGCATATATACG 58.801 43.478 21.36 0.39 0.00 3.06
3481 6601 4.131649 TGGGGCATGCATATATACGTAC 57.868 45.455 21.36 0.00 0.00 3.67
3488 6673 6.183360 GGCATGCATATATACGTACTACTCCA 60.183 42.308 21.36 0.00 0.00 3.86
3582 6770 9.122779 AGTAAATCTACAATCTAAGCTACGTCT 57.877 33.333 0.00 0.00 0.00 4.18
3596 6784 6.900568 AGCTACGTCTATATACATCCGTAC 57.099 41.667 0.00 0.00 0.00 3.67
3599 6787 6.472486 GCTACGTCTATATACATCCGTACGTA 59.528 42.308 15.21 0.00 29.24 3.57
3602 6790 6.868864 ACGTCTATATACATCCGTACGTAGTT 59.131 38.462 15.21 0.00 37.78 2.24
3609 6797 9.999009 ATATACATCCGTACGTAGTTCATATTG 57.001 33.333 15.21 0.00 37.78 1.90
3610 6798 6.381481 ACATCCGTACGTAGTTCATATTGA 57.619 37.500 15.21 0.00 37.78 2.57
3611 6799 6.798482 ACATCCGTACGTAGTTCATATTGAA 58.202 36.000 15.21 0.00 37.78 2.69
3612 6800 7.259882 ACATCCGTACGTAGTTCATATTGAAA 58.740 34.615 15.21 0.00 37.78 2.69
3613 6801 7.924412 ACATCCGTACGTAGTTCATATTGAAAT 59.076 33.333 15.21 0.00 37.78 2.17
3614 6802 7.919313 TCCGTACGTAGTTCATATTGAAATC 57.081 36.000 15.21 0.00 37.78 2.17
3615 6803 7.709947 TCCGTACGTAGTTCATATTGAAATCT 58.290 34.615 15.21 0.00 37.78 2.40
3616 6804 7.859377 TCCGTACGTAGTTCATATTGAAATCTC 59.141 37.037 15.21 0.00 37.78 2.75
3617 6805 7.861372 CCGTACGTAGTTCATATTGAAATCTCT 59.139 37.037 15.21 0.00 37.78 3.10
3618 6806 9.874215 CGTACGTAGTTCATATTGAAATCTCTA 57.126 33.333 7.22 0.00 37.78 2.43
3675 6886 4.747605 GGAGTAGCAGTTAAGCAATCTAGC 59.252 45.833 0.00 0.00 36.85 3.42
3713 6932 4.888823 ACAAATATGTATGCATCCTGCACA 59.111 37.500 0.19 1.23 44.18 4.57
3737 6960 4.277672 GTCAGACAGCTATATACCGGACAA 59.722 45.833 9.46 0.00 0.00 3.18
3925 7148 3.646976 CTCGCGCATGCTGATGGG 61.647 66.667 17.13 8.54 43.72 4.00
4084 7310 3.508840 GTACGGTGGCATGCAGGC 61.509 66.667 21.36 16.47 44.50 4.85
4135 7361 1.805345 GAGCTATGAGCATGTGCATCC 59.195 52.381 7.83 0.00 45.56 3.51
4266 7509 7.667043 TGTTGTTCAAACTGACAGATATACC 57.333 36.000 10.08 0.00 0.00 2.73
4270 7513 8.492673 TGTTCAAACTGACAGATATACCAATC 57.507 34.615 10.08 0.00 0.00 2.67
4304 7547 7.334090 TCTGAATTTGTTTTGGATGTTGGAAA 58.666 30.769 0.00 0.00 0.00 3.13
4395 7638 7.010183 CCATTTCTATACGGCAAGGATTATACG 59.990 40.741 0.00 0.00 0.00 3.06
4415 7658 3.623060 ACGGTGTGCAATTCAGATATGTC 59.377 43.478 0.00 0.00 0.00 3.06
4416 7659 3.302675 CGGTGTGCAATTCAGATATGTCG 60.303 47.826 0.00 0.00 0.00 4.35
4417 7660 3.546815 GGTGTGCAATTCAGATATGTCGC 60.547 47.826 0.00 0.00 0.00 5.19
4418 7661 3.063861 GTGTGCAATTCAGATATGTCGCA 59.936 43.478 0.00 0.00 0.00 5.10
4448 8205 3.677190 AACACTAGTCGATACTCTGCG 57.323 47.619 0.00 0.00 37.15 5.18
4453 8210 1.062047 GTCGATACTCTGCGCGTGA 59.938 57.895 8.43 5.84 0.00 4.35
4456 8213 1.804748 TCGATACTCTGCGCGTGATAT 59.195 47.619 8.43 6.88 0.00 1.63
4501 8265 9.524106 TGAAGGTGTATGTATAACAATAGTTCG 57.476 33.333 0.00 0.00 39.15 3.95
4533 8297 3.310193 GGAGGCTATGTTAGGAACCTCT 58.690 50.000 6.80 0.00 42.69 3.69
4558 8322 1.048601 AACAGACACGTGGGACTCAT 58.951 50.000 21.57 0.00 0.00 2.90
4561 8325 2.069273 CAGACACGTGGGACTCATTTC 58.931 52.381 21.57 4.66 0.00 2.17
4564 8328 0.320421 CACGTGGGACTCATTTCGGT 60.320 55.000 7.95 0.00 0.00 4.69
4566 8330 1.019278 CGTGGGACTCATTTCGGTGG 61.019 60.000 0.00 0.00 0.00 4.61
4567 8331 1.002624 TGGGACTCATTTCGGTGGC 60.003 57.895 0.00 0.00 0.00 5.01
4568 8332 1.299976 GGGACTCATTTCGGTGGCT 59.700 57.895 0.00 0.00 0.00 4.75
4570 8334 1.026718 GGACTCATTTCGGTGGCTGG 61.027 60.000 0.00 0.00 0.00 4.85
4573 8337 1.361668 CTCATTTCGGTGGCTGGTCG 61.362 60.000 0.00 0.00 0.00 4.79
4574 8338 2.746277 ATTTCGGTGGCTGGTCGC 60.746 61.111 0.00 0.00 38.13 5.19
4583 8347 3.050275 GCTGGTCGCCTGTCCAAC 61.050 66.667 5.08 0.00 32.78 3.77
4585 8349 4.308458 TGGTCGCCTGTCCAACCG 62.308 66.667 0.00 0.00 34.39 4.44
4587 8351 4.980805 GTCGCCTGTCCAACCGCA 62.981 66.667 0.00 0.00 0.00 5.69
4588 8352 4.680237 TCGCCTGTCCAACCGCAG 62.680 66.667 0.00 0.00 0.00 5.18
4591 8355 2.360350 CCTGTCCAACCGCAGCAT 60.360 61.111 0.00 0.00 0.00 3.79
4592 8356 1.973281 CCTGTCCAACCGCAGCATT 60.973 57.895 0.00 0.00 0.00 3.56
4594 8358 1.228094 TGTCCAACCGCAGCATTGA 60.228 52.632 7.79 0.00 0.00 2.57
4595 8359 1.210155 GTCCAACCGCAGCATTGAC 59.790 57.895 7.79 2.06 0.00 3.18
4596 8360 1.971167 TCCAACCGCAGCATTGACC 60.971 57.895 7.79 0.00 0.00 4.02
4597 8361 1.973281 CCAACCGCAGCATTGACCT 60.973 57.895 7.79 0.00 0.00 3.85
4598 8362 1.503542 CAACCGCAGCATTGACCTC 59.496 57.895 0.76 0.00 0.00 3.85
4599 8363 1.073025 AACCGCAGCATTGACCTCA 59.927 52.632 0.00 0.00 0.00 3.86
4600 8364 0.537143 AACCGCAGCATTGACCTCAA 60.537 50.000 0.00 0.00 40.51 3.02
4601 8365 0.957395 ACCGCAGCATTGACCTCAAG 60.957 55.000 0.00 0.00 39.47 3.02
4602 8366 1.651240 CCGCAGCATTGACCTCAAGG 61.651 60.000 0.00 0.00 39.47 3.61
4612 8376 2.124570 CCTCAAGGTGGCCATCCG 60.125 66.667 13.91 4.21 34.14 4.18
4613 8377 2.671070 CTCAAGGTGGCCATCCGT 59.329 61.111 13.91 9.67 34.14 4.69
4615 8379 3.443045 CAAGGTGGCCATCCGTGC 61.443 66.667 13.91 0.00 34.14 5.34
4616 8380 3.965258 AAGGTGGCCATCCGTGCA 61.965 61.111 13.91 0.00 34.14 4.57
4620 8384 2.035469 TGGCCATCCGTGCATTGT 59.965 55.556 0.00 0.00 34.14 2.71
4621 8385 2.045708 TGGCCATCCGTGCATTGTC 61.046 57.895 0.00 0.00 34.14 3.18
4622 8386 2.774799 GGCCATCCGTGCATTGTCC 61.775 63.158 0.00 0.00 0.00 4.02
4623 8387 2.774799 GCCATCCGTGCATTGTCCC 61.775 63.158 0.00 0.00 0.00 4.46
4624 8388 2.120909 CCATCCGTGCATTGTCCCC 61.121 63.158 0.00 0.00 0.00 4.81
4625 8389 1.077501 CATCCGTGCATTGTCCCCT 60.078 57.895 0.00 0.00 0.00 4.79
4626 8390 0.680921 CATCCGTGCATTGTCCCCTT 60.681 55.000 0.00 0.00 0.00 3.95
4627 8391 0.394352 ATCCGTGCATTGTCCCCTTC 60.394 55.000 0.00 0.00 0.00 3.46
4632 8396 1.304381 GCATTGTCCCCTTCCTGCA 60.304 57.895 0.00 0.00 0.00 4.41
4634 8398 0.967380 CATTGTCCCCTTCCTGCACC 60.967 60.000 0.00 0.00 0.00 5.01
4636 8400 2.067932 TTGTCCCCTTCCTGCACCAG 62.068 60.000 0.00 0.00 0.00 4.00
4637 8401 2.121963 TCCCCTTCCTGCACCAGT 60.122 61.111 0.00 0.00 0.00 4.00
4638 8402 2.224159 TCCCCTTCCTGCACCAGTC 61.224 63.158 0.00 0.00 0.00 3.51
4640 8404 2.046892 CCTTCCTGCACCAGTCCG 60.047 66.667 0.00 0.00 0.00 4.79
4641 8405 2.743718 CTTCCTGCACCAGTCCGT 59.256 61.111 0.00 0.00 0.00 4.69
4643 8407 2.383245 CTTCCTGCACCAGTCCGTGT 62.383 60.000 0.00 0.00 36.08 4.49
4644 8408 2.357517 CCTGCACCAGTCCGTGTC 60.358 66.667 0.00 0.00 36.08 3.67
4645 8409 2.357517 CTGCACCAGTCCGTGTCC 60.358 66.667 0.00 0.00 36.08 4.02
4646 8410 2.842462 TGCACCAGTCCGTGTCCT 60.842 61.111 0.00 0.00 36.08 3.85
4648 8412 1.668151 GCACCAGTCCGTGTCCTTC 60.668 63.158 0.00 0.00 36.08 3.46
4649 8413 1.372997 CACCAGTCCGTGTCCTTCG 60.373 63.158 0.00 0.00 0.00 3.79
4651 8415 2.432628 CAGTCCGTGTCCTTCGGC 60.433 66.667 0.00 0.00 46.49 5.54
4654 8418 3.235481 TCCGTGTCCTTCGGCCAA 61.235 61.111 2.24 0.00 46.49 4.52
4655 8419 2.046314 CCGTGTCCTTCGGCCAAT 60.046 61.111 2.24 0.00 41.48 3.16
4656 8420 2.398554 CCGTGTCCTTCGGCCAATG 61.399 63.158 2.24 0.00 41.48 2.82
4798 9270 7.801104 TGTGTGGATATATAGACAACACCATT 58.199 34.615 19.08 0.00 0.00 3.16
4817 9448 4.262678 CCATTTCCCTAGTAAGCCTCTAGC 60.263 50.000 0.00 0.00 44.25 3.42
5104 11880 2.033550 GTGCACTACAGGTATCTCCGAG 59.966 54.545 10.32 0.00 41.99 4.63
5214 11990 5.251601 TCATCATAATGTGCACAATGTGG 57.748 39.130 25.59 19.07 32.70 4.17
5252 12035 3.492656 CGGGATGATGTGAGTTACGGAAT 60.493 47.826 0.00 0.00 0.00 3.01
5266 12049 1.361668 CGGAATGAGACTTGCCGGTG 61.362 60.000 1.90 0.00 38.40 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
178 181 7.148323 CGGTTAGGTTGTTTATCACATCATTCA 60.148 37.037 0.00 0.00 34.43 2.57
204 211 7.753580 ACTTTTGTACTACAACAAGCAACTTTC 59.246 33.333 16.06 0.00 40.29 2.62
427 434 6.662865 TGCAAAATTCACTCCAAAATAGGA 57.337 33.333 0.00 0.00 36.00 2.94
579 587 3.729698 GTTGGGGTTGGTACGCGC 61.730 66.667 5.73 0.00 38.05 6.86
580 588 3.416382 CGTTGGGGTTGGTACGCG 61.416 66.667 3.53 3.53 38.05 6.01
583 591 0.674581 GTAGGCGTTGGGGTTGGTAC 60.675 60.000 0.00 0.00 0.00 3.34
584 592 1.678724 GTAGGCGTTGGGGTTGGTA 59.321 57.895 0.00 0.00 0.00 3.25
638 654 1.081509 GGCGGTACACGTACACGAA 60.082 57.895 9.04 0.00 46.52 3.85
647 663 1.570967 GTGTTTTCGGGCGGTACAC 59.429 57.895 0.00 10.17 33.23 2.90
648 664 1.955157 CGTGTTTTCGGGCGGTACA 60.955 57.895 0.00 0.00 0.00 2.90
649 665 2.855325 CGTGTTTTCGGGCGGTAC 59.145 61.111 0.00 0.00 0.00 3.34
650 666 3.043121 GCGTGTTTTCGGGCGGTA 61.043 61.111 0.00 0.00 0.00 4.02
652 668 4.676586 GTGCGTGTTTTCGGGCGG 62.677 66.667 0.00 0.00 0.00 6.13
653 669 2.725275 AATGTGCGTGTTTTCGGGCG 62.725 55.000 0.00 0.00 0.00 6.13
654 670 0.596341 AAATGTGCGTGTTTTCGGGC 60.596 50.000 0.00 0.00 0.00 6.13
662 678 1.209898 CCATGCGAAATGTGCGTGT 59.790 52.632 6.44 0.00 45.64 4.49
665 681 1.695813 TTTTCCATGCGAAATGTGCG 58.304 45.000 9.31 0.00 40.18 5.34
666 682 3.252400 TCATTTTCCATGCGAAATGTGC 58.748 40.909 21.41 0.00 41.61 4.57
764 780 4.986659 GCACAGTATTTTCGTACGGGATAT 59.013 41.667 16.52 7.88 0.00 1.63
767 783 2.231964 AGCACAGTATTTTCGTACGGGA 59.768 45.455 16.52 1.41 0.00 5.14
768 784 2.601763 GAGCACAGTATTTTCGTACGGG 59.398 50.000 16.52 0.00 0.00 5.28
769 785 3.060363 GTGAGCACAGTATTTTCGTACGG 59.940 47.826 16.52 0.00 0.00 4.02
770 786 3.060363 GGTGAGCACAGTATTTTCGTACG 59.940 47.826 9.53 9.53 0.00 3.67
771 787 3.991773 TGGTGAGCACAGTATTTTCGTAC 59.008 43.478 2.75 0.00 0.00 3.67
772 788 4.260139 TGGTGAGCACAGTATTTTCGTA 57.740 40.909 2.75 0.00 0.00 3.43
773 789 3.120321 TGGTGAGCACAGTATTTTCGT 57.880 42.857 2.75 0.00 0.00 3.85
774 790 4.083324 ACATTGGTGAGCACAGTATTTTCG 60.083 41.667 2.75 0.00 0.00 3.46
775 791 5.376854 ACATTGGTGAGCACAGTATTTTC 57.623 39.130 2.75 0.00 0.00 2.29
776 792 5.789643 AACATTGGTGAGCACAGTATTTT 57.210 34.783 2.75 0.00 0.00 1.82
777 793 5.789643 AAACATTGGTGAGCACAGTATTT 57.210 34.783 2.75 0.00 0.00 1.40
778 794 5.415701 CCTAAACATTGGTGAGCACAGTATT 59.584 40.000 2.75 0.00 0.00 1.89
779 795 4.943705 CCTAAACATTGGTGAGCACAGTAT 59.056 41.667 2.75 0.00 0.00 2.12
780 796 4.323417 CCTAAACATTGGTGAGCACAGTA 58.677 43.478 2.75 0.00 0.00 2.74
781 797 3.149196 CCTAAACATTGGTGAGCACAGT 58.851 45.455 2.75 0.00 0.00 3.55
782 798 2.095059 GCCTAAACATTGGTGAGCACAG 60.095 50.000 2.75 0.00 0.00 3.66
783 799 1.885887 GCCTAAACATTGGTGAGCACA 59.114 47.619 2.75 0.00 0.00 4.57
784 800 2.162681 AGCCTAAACATTGGTGAGCAC 58.837 47.619 0.00 0.00 0.00 4.40
791 807 5.807011 GTGCTTGAATTAGCCTAAACATTGG 59.193 40.000 0.00 0.00 40.49 3.16
795 811 4.069304 ACGTGCTTGAATTAGCCTAAACA 58.931 39.130 0.00 0.00 40.49 2.83
797 813 5.484715 AGTACGTGCTTGAATTAGCCTAAA 58.515 37.500 0.00 0.00 40.49 1.85
823 839 9.520204 GCGTGGTATTAAAGTATACTTCTTGTA 57.480 33.333 18.28 4.76 34.61 2.41
825 841 7.553034 CGCGTGGTATTAAAGTATACTTCTTG 58.447 38.462 18.28 3.77 34.61 3.02
871 893 2.853235 ACGACCTTAACCTTTGGGAG 57.147 50.000 0.00 0.00 36.25 4.30
882 904 4.194640 AGCAAGATACGACTACGACCTTA 58.805 43.478 0.00 0.00 42.66 2.69
889 911 3.242123 GCTGCAAAGCAAGATACGACTAC 60.242 47.826 0.00 0.00 38.41 2.73
932 957 3.713858 TCAACTGAGGTGCACAAAATG 57.286 42.857 20.43 9.46 0.00 2.32
933 958 3.489059 CGTTCAACTGAGGTGCACAAAAT 60.489 43.478 20.43 0.41 0.00 1.82
935 960 1.400142 CGTTCAACTGAGGTGCACAAA 59.600 47.619 20.43 1.92 0.00 2.83
936 961 1.013596 CGTTCAACTGAGGTGCACAA 58.986 50.000 20.43 2.32 0.00 3.33
937 962 1.436195 GCGTTCAACTGAGGTGCACA 61.436 55.000 20.43 0.00 0.00 4.57
938 963 1.279840 GCGTTCAACTGAGGTGCAC 59.720 57.895 8.80 8.80 0.00 4.57
942 967 1.598130 GCAGGCGTTCAACTGAGGT 60.598 57.895 0.00 0.00 36.86 3.85
1084 1116 1.310933 AAGACGTGGTCGCCGTAGAT 61.311 55.000 0.00 0.00 38.92 1.98
1134 1208 1.736645 GATGACACCACCACCGTCG 60.737 63.158 0.00 0.00 32.17 5.12
1139 1213 1.375523 GACGGGATGACACCACCAC 60.376 63.158 0.00 0.00 0.00 4.16
1217 1291 1.982938 GGAGGTACGTCCAGGTGCT 60.983 63.158 26.05 0.00 39.02 4.40
1229 1303 1.750399 GTCGGGTAGCACGGAGGTA 60.750 63.158 0.00 0.00 0.00 3.08
1230 1304 3.066814 GTCGGGTAGCACGGAGGT 61.067 66.667 0.00 0.00 0.00 3.85
1268 1348 3.129502 TGACCGGAGTCGCTACCG 61.130 66.667 9.46 0.00 46.74 4.02
1527 1625 3.000727 CACTTGTTCCCTGTATTCGACC 58.999 50.000 0.00 0.00 0.00 4.79
1536 1634 3.981071 TGGATCTACACTTGTTCCCTG 57.019 47.619 0.00 0.00 0.00 4.45
1699 1851 1.024579 AAATCTGCGCGGGATTTCGT 61.025 50.000 25.20 11.80 38.53 3.85
1700 1852 0.316196 GAAATCTGCGCGGGATTTCG 60.316 55.000 32.37 7.73 44.60 3.46
1706 1858 3.564027 GTCCGAAATCTGCGCGGG 61.564 66.667 17.88 4.96 44.87 6.13
1708 1860 1.752501 AATCGTCCGAAATCTGCGCG 61.753 55.000 0.00 0.00 0.00 6.86
1709 1861 0.373716 AAATCGTCCGAAATCTGCGC 59.626 50.000 0.00 0.00 0.00 6.09
1710 1862 3.489416 TCATAAATCGTCCGAAATCTGCG 59.511 43.478 0.00 0.00 0.00 5.18
1712 1864 7.169813 TCAGATTCATAAATCGTCCGAAATCTG 59.830 37.037 21.81 21.81 45.01 2.90
1714 1866 7.408132 TCAGATTCATAAATCGTCCGAAATC 57.592 36.000 0.00 0.00 45.01 2.17
1719 1888 5.966636 TGTTCAGATTCATAAATCGTCCG 57.033 39.130 0.00 0.00 45.01 4.79
1720 1889 9.573133 AAATTTGTTCAGATTCATAAATCGTCC 57.427 29.630 0.00 0.00 45.01 4.79
1729 1898 9.781633 TTTTGGATGAAATTTGTTCAGATTCAT 57.218 25.926 0.00 0.00 41.89 2.57
1807 1976 1.029947 GCATTTCCCAGTACCCCACG 61.030 60.000 0.00 0.00 0.00 4.94
1808 1977 1.029947 CGCATTTCCCAGTACCCCAC 61.030 60.000 0.00 0.00 0.00 4.61
1810 1979 1.453197 CCGCATTTCCCAGTACCCC 60.453 63.158 0.00 0.00 0.00 4.95
1843 2012 3.374012 TACCGCCCGGACAATTCGG 62.374 63.158 14.44 8.32 46.43 4.30
1844 2013 2.169146 GTACCGCCCGGACAATTCG 61.169 63.158 14.44 0.00 38.96 3.34
1845 2014 1.816679 GGTACCGCCCGGACAATTC 60.817 63.158 14.44 0.00 38.96 2.17
1846 2015 2.269883 GGTACCGCCCGGACAATT 59.730 61.111 14.44 0.00 38.96 2.32
1870 2039 2.289010 TGATCTTTGCGTTCAGAGCAGA 60.289 45.455 0.00 0.00 46.01 4.26
1884 2053 1.647545 CCACGTGCGGCATGATCTTT 61.648 55.000 27.65 2.71 0.00 2.52
1907 2076 1.389555 ACATCTCACCTCACGCGATA 58.610 50.000 15.93 0.00 0.00 2.92
1927 2096 3.194755 GCGAACCCTAAATCCCATTGTTT 59.805 43.478 0.00 0.00 0.00 2.83
1954 2123 2.112279 AGGTAGGTGGGAAGTTGACA 57.888 50.000 0.00 0.00 0.00 3.58
1975 2156 8.869109 AGGATAAGATTTGTTTGTTTGGAATGA 58.131 29.630 0.00 0.00 0.00 2.57
2005 2186 2.910544 TCCTTTGCTACCTAGGGAACA 58.089 47.619 14.81 2.57 0.00 3.18
2013 2194 4.464947 GGCATATTCTTCCTTTGCTACCT 58.535 43.478 0.00 0.00 33.86 3.08
2030 2583 4.058124 GTTGATCTACATTGAGCGGCATA 58.942 43.478 1.45 0.00 0.00 3.14
2031 2584 2.874701 GTTGATCTACATTGAGCGGCAT 59.125 45.455 1.45 0.00 0.00 4.40
2032 2585 2.093500 AGTTGATCTACATTGAGCGGCA 60.093 45.455 9.96 0.00 0.00 5.69
2044 2597 7.451501 TGTTCAATCATTGCAAGTTGATCTA 57.548 32.000 19.16 8.51 31.48 1.98
2071 2624 1.202200 CGGATAGCTATCTAGTGCCGC 60.202 57.143 28.36 11.75 33.99 6.53
2163 5019 7.511371 ACCCATCAATCATTCACCATTATTCAT 59.489 33.333 0.00 0.00 0.00 2.57
2176 5032 3.056393 CACAGCAACACCCATCAATCATT 60.056 43.478 0.00 0.00 0.00 2.57
2178 5034 1.887854 CACAGCAACACCCATCAATCA 59.112 47.619 0.00 0.00 0.00 2.57
2182 5038 1.902918 GCCACAGCAACACCCATCA 60.903 57.895 0.00 0.00 39.53 3.07
2198 5054 4.078639 AGCTAGGTGATAACAATCAGCC 57.921 45.455 12.54 6.46 46.85 4.85
2224 5080 7.303634 TGATAAAAGATAGTGCGAGGAAAAC 57.696 36.000 0.00 0.00 0.00 2.43
2267 5123 3.415212 AGCTAGCTCATGCACTTCAAAA 58.585 40.909 12.68 0.00 42.74 2.44
2298 5154 0.246635 TCGAAGCACAAGTAGGAGCC 59.753 55.000 0.00 0.00 0.00 4.70
2305 5161 2.034879 CCGCCATCGAAGCACAAGT 61.035 57.895 10.92 0.00 38.10 3.16
2315 5171 2.031516 GGATGCTCATCCGCCATCG 61.032 63.158 12.62 0.00 46.84 3.84
2358 5217 2.051334 TAATGGAAACGGGATGCCTG 57.949 50.000 0.28 0.00 35.68 4.85
2359 5218 2.818751 TTAATGGAAACGGGATGCCT 57.181 45.000 0.28 0.00 0.00 4.75
2382 5241 3.666797 CCGAACTTTGCATTTCCGTTAAC 59.333 43.478 0.00 0.00 0.00 2.01
2388 5247 1.269448 TCTGCCGAACTTTGCATTTCC 59.731 47.619 0.00 0.00 36.79 3.13
2393 5252 0.179059 TGTCTCTGCCGAACTTTGCA 60.179 50.000 0.00 0.00 35.86 4.08
2394 5253 1.160137 ATGTCTCTGCCGAACTTTGC 58.840 50.000 0.00 0.00 0.00 3.68
2404 5263 2.675348 GGTCTTGCTTGTATGTCTCTGC 59.325 50.000 0.00 0.00 0.00 4.26
2412 5271 3.620966 GCTCTTCCTGGTCTTGCTTGTAT 60.621 47.826 0.00 0.00 0.00 2.29
2414 5273 1.544314 GCTCTTCCTGGTCTTGCTTGT 60.544 52.381 0.00 0.00 0.00 3.16
2425 5284 2.695666 TCCCTCTATTTCGCTCTTCCTG 59.304 50.000 0.00 0.00 0.00 3.86
2430 5289 1.067821 CGCTTCCCTCTATTTCGCTCT 59.932 52.381 0.00 0.00 0.00 4.09
2434 5293 2.860735 CAACTCGCTTCCCTCTATTTCG 59.139 50.000 0.00 0.00 0.00 3.46
2456 5315 2.633488 GAGGGTCTCCTTGTAATGCAC 58.367 52.381 0.00 0.00 45.05 4.57
2475 5334 1.792118 CGATATCGAGCACCCGTGGA 61.792 60.000 20.50 0.00 43.02 4.02
2488 5347 4.684703 CCCCGTAATGAGTGTTTCGATATC 59.315 45.833 0.00 0.00 0.00 1.63
2503 5362 2.521126 CCTGGTTTTTGTCCCCGTAAT 58.479 47.619 0.00 0.00 0.00 1.89
2508 5367 2.049435 CTGCCTGGTTTTTGTCCCC 58.951 57.895 0.00 0.00 0.00 4.81
2526 5385 3.668447 TCCTCATGTGAAGACTTTCTGC 58.332 45.455 0.00 0.00 34.31 4.26
2538 5487 4.578871 TGGTTAGTGTTGATCCTCATGTG 58.421 43.478 0.00 0.00 0.00 3.21
2545 5494 3.713826 TCCCTTGGTTAGTGTTGATCC 57.286 47.619 0.00 0.00 0.00 3.36
2553 5502 4.079958 GGGTTATGTGATCCCTTGGTTAGT 60.080 45.833 0.00 0.00 38.29 2.24
2587 5536 1.478510 TCATTTCTCCCTCTCGCACTC 59.521 52.381 0.00 0.00 0.00 3.51
2595 5544 4.333926 CGGTTGATCTTTCATTTCTCCCTC 59.666 45.833 0.00 0.00 0.00 4.30
2605 5554 0.036732 AGCTGGCGGTTGATCTTTCA 59.963 50.000 0.00 0.00 0.00 2.69
2649 5603 0.318699 TCGCTCGACAGTTGAACCTG 60.319 55.000 0.00 0.00 38.45 4.00
2650 5604 0.039074 CTCGCTCGACAGTTGAACCT 60.039 55.000 0.00 0.00 0.00 3.50
2652 5606 0.939577 TGCTCGCTCGACAGTTGAAC 60.940 55.000 0.00 0.00 0.00 3.18
2657 5611 2.492090 GGATGCTCGCTCGACAGT 59.508 61.111 0.00 0.00 0.00 3.55
2658 5612 2.279120 GGGATGCTCGCTCGACAG 60.279 66.667 0.00 0.00 0.00 3.51
2661 5615 4.212913 GCTGGGATGCTCGCTCGA 62.213 66.667 0.00 0.00 0.00 4.04
2677 5631 2.358003 AGTGCTGCTGAACGAGGC 60.358 61.111 0.00 0.00 0.00 4.70
2697 5651 1.075536 GATGTGTTCCAAGGAGGGGTT 59.924 52.381 0.00 0.00 38.24 4.11
2715 5669 0.468226 TCAAAGGCGCGGATAAGGAT 59.532 50.000 8.83 0.00 0.00 3.24
2719 5673 2.902705 ATACTCAAAGGCGCGGATAA 57.097 45.000 8.83 0.00 0.00 1.75
2720 5674 3.057736 GTCTATACTCAAAGGCGCGGATA 60.058 47.826 8.83 0.00 0.00 2.59
2721 5675 1.961394 TCTATACTCAAAGGCGCGGAT 59.039 47.619 8.83 0.00 0.00 4.18
2722 5676 1.066605 GTCTATACTCAAAGGCGCGGA 59.933 52.381 8.83 0.00 0.00 5.54
2723 5677 1.488527 GTCTATACTCAAAGGCGCGG 58.511 55.000 8.83 0.00 0.00 6.46
2724 5678 1.067212 AGGTCTATACTCAAAGGCGCG 59.933 52.381 0.00 0.00 0.00 6.86
2725 5679 2.474816 CAGGTCTATACTCAAAGGCGC 58.525 52.381 0.00 0.00 0.00 6.53
2726 5680 2.474816 GCAGGTCTATACTCAAAGGCG 58.525 52.381 0.00 0.00 0.00 5.52
2727 5681 2.485657 GGGCAGGTCTATACTCAAAGGC 60.486 54.545 0.00 0.00 0.00 4.35
2728 5682 2.771943 TGGGCAGGTCTATACTCAAAGG 59.228 50.000 0.00 0.00 0.00 3.11
2729 5683 4.487714 TTGGGCAGGTCTATACTCAAAG 57.512 45.455 0.00 0.00 0.00 2.77
2730 5684 5.427157 TGTATTGGGCAGGTCTATACTCAAA 59.573 40.000 0.00 0.00 0.00 2.69
2731 5685 4.966168 TGTATTGGGCAGGTCTATACTCAA 59.034 41.667 0.00 0.00 0.00 3.02
2732 5686 4.552674 TGTATTGGGCAGGTCTATACTCA 58.447 43.478 0.00 0.00 0.00 3.41
2733 5687 5.246203 TGATGTATTGGGCAGGTCTATACTC 59.754 44.000 0.00 0.00 0.00 2.59
2734 5688 5.155161 TGATGTATTGGGCAGGTCTATACT 58.845 41.667 0.00 0.00 0.00 2.12
2735 5689 5.483685 TGATGTATTGGGCAGGTCTATAC 57.516 43.478 0.00 0.00 0.00 1.47
2736 5690 5.784906 TCATGATGTATTGGGCAGGTCTATA 59.215 40.000 0.00 0.00 0.00 1.31
2737 5691 4.598807 TCATGATGTATTGGGCAGGTCTAT 59.401 41.667 0.00 0.00 0.00 1.98
2738 5692 3.973305 TCATGATGTATTGGGCAGGTCTA 59.027 43.478 0.00 0.00 0.00 2.59
2739 5693 2.779430 TCATGATGTATTGGGCAGGTCT 59.221 45.455 0.00 0.00 0.00 3.85
2740 5694 3.213206 TCATGATGTATTGGGCAGGTC 57.787 47.619 0.00 0.00 0.00 3.85
2741 5695 3.668141 TTCATGATGTATTGGGCAGGT 57.332 42.857 0.00 0.00 0.00 4.00
2742 5696 4.209538 TCTTTCATGATGTATTGGGCAGG 58.790 43.478 0.00 0.00 0.00 4.85
2743 5697 5.125900 TGTTCTTTCATGATGTATTGGGCAG 59.874 40.000 0.00 0.00 0.00 4.85
2744 5698 5.015515 TGTTCTTTCATGATGTATTGGGCA 58.984 37.500 0.00 0.00 0.00 5.36
2745 5699 5.581126 TGTTCTTTCATGATGTATTGGGC 57.419 39.130 0.00 0.00 0.00 5.36
2746 5700 7.605449 AGTTTGTTCTTTCATGATGTATTGGG 58.395 34.615 0.00 0.00 0.00 4.12
2752 5706 9.288576 TCTTCATAGTTTGTTCTTTCATGATGT 57.711 29.630 0.00 0.00 0.00 3.06
2788 5742 1.808945 GTGGAGTTGTGCAATCTCCTG 59.191 52.381 23.94 0.00 45.46 3.86
2808 5762 2.335712 GCAAGCGGGGGACAAGAAG 61.336 63.158 0.00 0.00 0.00 2.85
2809 5763 2.282180 GCAAGCGGGGGACAAGAA 60.282 61.111 0.00 0.00 0.00 2.52
2831 5785 6.117911 TGGTCAGTAATAATTGTTGCATCG 57.882 37.500 5.86 0.00 0.00 3.84
2845 5799 8.826765 AGATCCTCTCTTTTTATTGGTCAGTAA 58.173 33.333 0.00 0.00 0.00 2.24
2870 5853 9.575783 GTACTAGGACTTCTTTTCTGACATAAG 57.424 37.037 0.00 0.00 0.00 1.73
2883 5866 8.709272 ACTAAGAACAAAGTACTAGGACTTCT 57.291 34.615 20.81 10.81 38.75 2.85
2928 5911 8.106247 TGAGTAGATGATTTTGTTTGGTAACC 57.894 34.615 0.00 0.00 33.15 2.85
3034 6017 1.001760 TCCCTCTTCCCCTCCTTCG 59.998 63.158 0.00 0.00 0.00 3.79
3178 6161 5.748402 AGAAAAGATGTGCATGTCCATAGA 58.252 37.500 0.00 0.00 0.00 1.98
3180 6163 8.523915 AATAAGAAAAGATGTGCATGTCCATA 57.476 30.769 0.00 0.00 0.00 2.74
3208 6191 0.110238 CAAACGAGGAATGTGTGCGG 60.110 55.000 0.00 0.00 0.00 5.69
3251 6234 9.433317 CGCAACGAAAAATACAAGTATATGATT 57.567 29.630 0.00 0.00 0.00 2.57
3266 6249 4.794164 TGCTTGCGCAACGAAAAA 57.206 44.444 21.02 0.00 44.62 1.94
3285 6397 5.656480 ACCGTGTTGCTCAAACTTAAAAAT 58.344 33.333 0.00 0.00 39.70 1.82
3314 6431 7.270047 AGAATTCACGAAGGTAAATATTCCGA 58.730 34.615 8.44 0.00 0.00 4.55
3353 6470 1.418367 GTCGATTTTGCGCGCTGTA 59.582 52.632 33.29 17.05 0.00 2.74
3373 6490 2.086869 GGCAGATGTTACACATGCTGT 58.913 47.619 18.71 0.00 39.27 4.40
3376 6493 0.378257 CGGGCAGATGTTACACATGC 59.622 55.000 13.24 13.24 39.27 4.06
3381 6498 2.125310 CGCCGGGCAGATGTTACA 60.125 61.111 20.71 0.00 0.00 2.41
3437 6554 7.598493 CCCAATGAGTGAACACGATTTTTATTT 59.402 33.333 0.00 0.00 36.20 1.40
3438 6555 7.090173 CCCAATGAGTGAACACGATTTTTATT 58.910 34.615 0.00 0.00 36.20 1.40
3443 6560 2.819608 CCCCAATGAGTGAACACGATTT 59.180 45.455 0.00 0.00 36.20 2.17
3451 6571 0.251698 TGCATGCCCCAATGAGTGAA 60.252 50.000 16.68 0.00 0.00 3.18
3453 6573 1.694844 TATGCATGCCCCAATGAGTG 58.305 50.000 16.68 0.00 0.00 3.51
3455 6575 4.274214 CGTATATATGCATGCCCCAATGAG 59.726 45.833 16.68 0.00 0.00 2.90
3456 6576 4.198530 CGTATATATGCATGCCCCAATGA 58.801 43.478 16.68 0.00 0.00 2.57
3460 6580 3.772572 AGTACGTATATATGCATGCCCCA 59.227 43.478 16.68 0.00 0.00 4.96
3461 6581 4.402056 AGTACGTATATATGCATGCCCC 57.598 45.455 16.68 0.00 0.00 5.80
3462 6582 6.145338 AGTAGTACGTATATATGCATGCCC 57.855 41.667 16.68 0.00 0.00 5.36
3464 6584 6.792326 TGGAGTAGTACGTATATATGCATGC 58.208 40.000 11.82 11.82 0.00 4.06
3465 6585 8.076781 GGATGGAGTAGTACGTATATATGCATG 58.923 40.741 10.16 0.00 0.00 4.06
3474 6594 3.817647 GGAACGGATGGAGTAGTACGTAT 59.182 47.826 0.00 0.00 33.85 3.06
3477 6597 2.295885 AGGAACGGATGGAGTAGTACG 58.704 52.381 0.00 0.00 0.00 3.67
3478 6598 5.841957 TTTAGGAACGGATGGAGTAGTAC 57.158 43.478 0.00 0.00 0.00 2.73
3556 6744 9.122779 AGACGTAGCTTAGATTGTAGATTTACT 57.877 33.333 0.00 0.00 0.00 2.24
3566 6754 9.938670 GGATGTATATAGACGTAGCTTAGATTG 57.061 37.037 0.00 0.00 0.00 2.67
3570 6758 7.536895 ACGGATGTATATAGACGTAGCTTAG 57.463 40.000 0.00 0.00 32.30 2.18
3574 6762 5.289675 ACGTACGGATGTATATAGACGTAGC 59.710 44.000 21.06 4.65 37.46 3.58
3577 6765 6.390721 ACTACGTACGGATGTATATAGACGT 58.609 40.000 21.06 0.00 38.23 4.34
3579 6767 8.244494 TGAACTACGTACGGATGTATATAGAC 57.756 38.462 21.06 9.34 32.11 2.59
3583 6771 9.999009 CAATATGAACTACGTACGGATGTATAT 57.001 33.333 21.06 12.44 32.11 0.86
3585 6773 8.102800 TCAATATGAACTACGTACGGATGTAT 57.897 34.615 21.06 8.99 32.11 2.29
3589 6777 8.358148 AGATTTCAATATGAACTACGTACGGAT 58.642 33.333 21.06 1.34 35.89 4.18
3644 6835 4.504858 CTTAACTGCTACTCCATCCGTTT 58.495 43.478 0.00 0.00 0.00 3.60
3653 6844 5.596845 AGCTAGATTGCTTAACTGCTACTC 58.403 41.667 0.00 0.00 40.93 2.59
3675 6886 7.783090 ACATATTTGTTCAGTCTGATGCTAG 57.217 36.000 2.68 0.00 29.55 3.42
3713 6932 4.073549 GTCCGGTATATAGCTGTCTGACT 58.926 47.826 9.51 0.00 0.00 3.41
3737 6960 7.770433 TGCATTGCTACTATCAGTAAATTGTCT 59.230 33.333 10.49 0.00 29.00 3.41
3920 7143 1.741770 GTCGACACCAGTGCCCATC 60.742 63.158 11.55 0.00 0.00 3.51
4084 7310 2.815647 GAAGAAGACCGGCCTGCG 60.816 66.667 0.00 0.00 0.00 5.18
4135 7361 6.157211 ACATAAACAGAGTGACCGAGTTAAG 58.843 40.000 0.00 0.00 0.00 1.85
4243 7474 7.667043 TGGTATATCTGTCAGTTTGAACAAC 57.333 36.000 0.00 0.00 0.00 3.32
4244 7475 8.862325 ATTGGTATATCTGTCAGTTTGAACAA 57.138 30.769 0.00 0.77 0.00 2.83
4245 7476 8.321353 AGATTGGTATATCTGTCAGTTTGAACA 58.679 33.333 0.00 0.00 33.68 3.18
4246 7477 8.723942 AGATTGGTATATCTGTCAGTTTGAAC 57.276 34.615 0.00 0.00 33.68 3.18
4250 7481 9.520515 AACAAAGATTGGTATATCTGTCAGTTT 57.479 29.630 0.00 0.00 35.12 2.66
4270 7513 8.027440 TCCAAAACAAATTCAGAACAACAAAG 57.973 30.769 0.00 0.00 0.00 2.77
4344 7587 6.377146 GGCTTTGATATTGTACCTGGAAAAGA 59.623 38.462 0.00 0.00 0.00 2.52
4395 7638 3.546815 GCGACATATCTGAATTGCACACC 60.547 47.826 0.00 0.00 0.00 4.16
4415 7658 4.201589 CGACTAGTGTTACAAATTCCTGCG 60.202 45.833 0.00 0.00 0.00 5.18
4416 7659 4.927425 TCGACTAGTGTTACAAATTCCTGC 59.073 41.667 0.00 0.00 0.00 4.85
4417 7660 7.974501 AGTATCGACTAGTGTTACAAATTCCTG 59.025 37.037 0.00 0.00 32.65 3.86
4418 7661 8.064336 AGTATCGACTAGTGTTACAAATTCCT 57.936 34.615 0.00 0.00 32.65 3.36
4483 8247 9.647797 CTTATGGCCGAACTATTGTTATACATA 57.352 33.333 0.00 0.00 36.39 2.29
4494 8258 2.550830 CCAGCTTATGGCCGAACTAT 57.449 50.000 0.00 0.00 43.83 2.12
4520 8284 3.975312 TGTTGGGTTAGAGGTTCCTAACA 59.025 43.478 13.62 7.95 46.27 2.41
4533 8297 0.107081 CCCACGTGTCTGTTGGGTTA 59.893 55.000 15.65 0.00 35.18 2.85
4567 8331 2.358737 GGTTGGACAGGCGACCAG 60.359 66.667 0.00 0.00 38.23 4.00
4568 8332 4.308458 CGGTTGGACAGGCGACCA 62.308 66.667 0.00 0.00 35.01 4.02
4570 8334 4.980805 TGCGGTTGGACAGGCGAC 62.981 66.667 0.00 0.00 0.00 5.19
4574 8338 1.973281 AATGCTGCGGTTGGACAGG 60.973 57.895 0.00 0.00 34.38 4.00
4575 8339 1.210931 CAATGCTGCGGTTGGACAG 59.789 57.895 9.03 0.00 36.96 3.51
4576 8340 1.228094 TCAATGCTGCGGTTGGACA 60.228 52.632 14.78 0.00 0.00 4.02
4577 8341 1.210155 GTCAATGCTGCGGTTGGAC 59.790 57.895 14.78 9.55 0.00 4.02
4578 8342 1.971167 GGTCAATGCTGCGGTTGGA 60.971 57.895 14.78 3.07 0.00 3.53
4581 8345 0.537143 TTGAGGTCAATGCTGCGGTT 60.537 50.000 0.00 0.00 0.00 4.44
4583 8347 1.651240 CCTTGAGGTCAATGCTGCGG 61.651 60.000 0.00 0.00 35.02 5.69
4595 8359 2.124570 CGGATGGCCACCTTGAGG 60.125 66.667 8.16 0.00 42.17 3.86
4596 8360 1.746615 CACGGATGGCCACCTTGAG 60.747 63.158 19.55 9.19 0.00 3.02
4597 8361 2.350895 CACGGATGGCCACCTTGA 59.649 61.111 19.55 0.00 0.00 3.02
4598 8362 3.443045 GCACGGATGGCCACCTTG 61.443 66.667 8.16 16.37 0.00 3.61
4599 8363 2.786512 AATGCACGGATGGCCACCTT 62.787 55.000 8.16 2.01 0.00 3.50
4600 8364 3.286694 AATGCACGGATGGCCACCT 62.287 57.895 8.16 0.00 0.00 4.00
4601 8365 2.755469 AATGCACGGATGGCCACC 60.755 61.111 8.16 11.25 0.00 4.61
4602 8366 2.270297 GACAATGCACGGATGGCCAC 62.270 60.000 8.16 1.35 0.00 5.01
4603 8367 2.035469 ACAATGCACGGATGGCCA 59.965 55.556 8.56 8.56 0.00 5.36
4605 8369 2.774799 GGGACAATGCACGGATGGC 61.775 63.158 0.00 0.00 0.00 4.40
4606 8370 2.120909 GGGGACAATGCACGGATGG 61.121 63.158 0.00 0.00 0.00 3.51
4607 8371 0.680921 AAGGGGACAATGCACGGATG 60.681 55.000 0.00 0.00 0.00 3.51
4610 8374 2.046285 GGAAGGGGACAATGCACGG 61.046 63.158 0.00 0.00 0.00 4.94
4612 8376 1.598701 GCAGGAAGGGGACAATGCAC 61.599 60.000 0.00 0.00 33.92 4.57
4613 8377 1.304381 GCAGGAAGGGGACAATGCA 60.304 57.895 0.00 0.00 33.92 3.96
4615 8379 0.967380 GGTGCAGGAAGGGGACAATG 60.967 60.000 0.00 0.00 0.00 2.82
4616 8380 1.384191 GGTGCAGGAAGGGGACAAT 59.616 57.895 0.00 0.00 0.00 2.71
4620 8384 2.121963 ACTGGTGCAGGAAGGGGA 60.122 61.111 0.00 0.00 35.51 4.81
4621 8385 2.352805 GACTGGTGCAGGAAGGGG 59.647 66.667 0.00 0.00 35.51 4.79
4622 8386 2.352805 GGACTGGTGCAGGAAGGG 59.647 66.667 0.00 0.00 35.51 3.95
4623 8387 2.046892 CGGACTGGTGCAGGAAGG 60.047 66.667 0.00 0.00 35.51 3.46
4624 8388 1.669115 CACGGACTGGTGCAGGAAG 60.669 63.158 0.00 0.00 35.51 3.46
4625 8389 2.377628 GACACGGACTGGTGCAGGAA 62.378 60.000 0.00 0.00 41.65 3.36
4626 8390 2.842462 ACACGGACTGGTGCAGGA 60.842 61.111 0.00 0.00 41.65 3.86
4627 8391 2.357517 GACACGGACTGGTGCAGG 60.358 66.667 0.00 0.00 41.65 4.85
4632 8396 3.048602 CGAAGGACACGGACTGGT 58.951 61.111 0.00 0.00 0.00 4.00
4645 8409 2.625823 AACACCGCATTGGCCGAAG 61.626 57.895 0.00 0.00 43.94 3.79
4646 8410 2.596046 AACACCGCATTGGCCGAA 60.596 55.556 0.00 0.00 43.94 4.30
4648 8412 4.418401 CCAACACCGCATTGGCCG 62.418 66.667 0.00 0.00 43.94 6.13
4649 8413 2.093537 TTTCCAACACCGCATTGGCC 62.094 55.000 0.00 0.00 45.38 5.36
4650 8414 0.037419 ATTTCCAACACCGCATTGGC 60.037 50.000 5.85 0.00 45.38 4.52
4651 8415 3.446799 CATATTTCCAACACCGCATTGG 58.553 45.455 4.62 4.62 46.86 3.16
4654 8418 1.408702 GGCATATTTCCAACACCGCAT 59.591 47.619 0.00 0.00 0.00 4.73
4655 8419 0.814457 GGCATATTTCCAACACCGCA 59.186 50.000 0.00 0.00 0.00 5.69
4656 8420 0.102300 GGGCATATTTCCAACACCGC 59.898 55.000 0.00 0.00 0.00 5.68
4817 9448 6.066054 TCTATTGATCAACGAGCTAGTCAG 57.934 41.667 11.07 0.00 0.00 3.51
5104 11880 0.465460 TGCCAACCCAACAGACACTC 60.465 55.000 0.00 0.00 0.00 3.51
5214 11990 1.026718 CCCGTGATCAACTCCTTGGC 61.027 60.000 0.00 0.00 0.00 4.52
5252 12035 2.142357 CTCGTCACCGGCAAGTCTCA 62.142 60.000 0.00 0.00 33.95 3.27
5266 12049 3.797256 CCGATACCTTGTTCAATCTCGTC 59.203 47.826 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.