AutoCloner

Multiple sequence alignment - TraesCS1D01G429300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G429300	chr1D	100.000	3550	0	0	1	3550	481057586	481061135	0.000000e+00	6556.0
1	TraesCS1D01G429300	chr1D	83.352	1754	182	44	816	2510	485249038	485250740	0.000000e+00	1520.0
2	TraesCS1D01G429300	chr1D	95.332	557	22	3	1	553	481035813	481036369	0.000000e+00	881.0
3	TraesCS1D01G429300	chr1D	88.783	419	42	4	2570	2986	485250738	485251153	3.160000e-140	508.0
4	TraesCS1D01G429300	chr1D	98.062	258	3	2	2495	2750	481072567	481072824	6.990000e-122	448.0
5	TraesCS1D01G429300	chr1D	84.071	452	66	5	1	446	295539959	295539508	7.040000e-117	431.0
6	TraesCS1D01G429300	chr1D	89.500	200	11	5	538	734	481037713	481037905	9.840000e-61	244.0
7	TraesCS1D01G429300	chr1D	88.614	202	18	4	3354	3550	485365257	485365458	1.270000e-59	241.0
8	TraesCS1D01G429300	chr1B	94.137	2439	77	22	425	2833	670745754	670743352	0.000000e+00	3651.0
9	TraesCS1D01G429300	chr1B	86.905	1764	167	24	924	2661	675648006	675649731	0.000000e+00	1919.0
10	TraesCS1D01G429300	chr1B	97.507	722	17	1	2829	3550	670737894	670737174	0.000000e+00	1232.0
11	TraesCS1D01G429300	chr1B	78.269	1583	259	55	1000	2551	675697901	675699429	0.000000e+00	939.0
12	TraesCS1D01G429300	chr1B	85.777	457	61	4	1	453	466943668	466944124	6.890000e-132	481.0
13	TraesCS1D01G429300	chr1B	86.716	271	34	2	2717	2986	675649737	675650006	2.070000e-77	300.0
14	TraesCS1D01G429300	chr1B	74.089	247	49	11	1895	2135	679623152	679622915	1.760000e-13	87.9
15	TraesCS1D01G429300	chr1A	88.623	1213	116	9	1778	2986	582543185	582544379	0.000000e+00	1456.0
16	TraesCS1D01G429300	chr1A	85.767	808	90	14	981	1775	582534769	582535564	0.000000e+00	832.0
17	TraesCS1D01G429300	chr1A	85.816	564	65	11	3000	3550	582513982	582514543	5.110000e-163	584.0
18	TraesCS1D01G429300	chr1A	85.662	551	64	11	3000	3537	582566846	582567394	1.850000e-157	566.0
19	TraesCS1D01G429300	chr1A	76.914	823	150	30	996	1798	576863521	576862719	7.040000e-117	431.0
20	TraesCS1D01G429300	chr1A	85.253	217	30	1	1961	2175	582507609	582507825	4.610000e-54	222.0
21	TraesCS1D01G429300	chr7D	85.333	450	62	4	1	446	540241278	540241727	2.500000e-126	462.0
22	TraesCS1D01G429300	chr6B	85.022	454	59	8	1	446	708040226	708040678	1.500000e-123	453.0
23	TraesCS1D01G429300	chr5D	84.802	454	64	5	1	450	243093901	243093449	5.400000e-123	451.0
24	TraesCS1D01G429300	chr5D	84.855	449	64	4	2	446	399931580	399931132	1.940000e-122	449.0
25	TraesCS1D01G429300	chr4A	84.444	450	65	5	1	446	625263552	625264000	4.210000e-119	438.0
26	TraesCS1D01G429300	chr5B	84.257	451	62	7	1	446	440264230	440264676	7.040000e-117	431.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G429300	chr1D	481057586	481061135	3549	False	6556.0	6556	100.0000	1	3550	1	chr1D.!!$F1	3549
1	TraesCS1D01G429300	chr1D	485249038	485251153	2115	False	1014.0	1520	86.0675	816	2986	2	chr1D.!!$F5	2170
2	TraesCS1D01G429300	chr1D	481035813	481037905	2092	False	562.5	881	92.4160	1	734	2	chr1D.!!$F4	733
3	TraesCS1D01G429300	chr1B	670743352	670745754	2402	True	3651.0	3651	94.1370	425	2833	1	chr1B.!!$R2	2408
4	TraesCS1D01G429300	chr1B	670737174	670737894	720	True	1232.0	1232	97.5070	2829	3550	1	chr1B.!!$R1	721
5	TraesCS1D01G429300	chr1B	675648006	675650006	2000	False	1109.5	1919	86.8105	924	2986	2	chr1B.!!$F3	2062
6	TraesCS1D01G429300	chr1B	675697901	675699429	1528	False	939.0	939	78.2690	1000	2551	1	chr1B.!!$F2	1551
7	TraesCS1D01G429300	chr1A	582543185	582544379	1194	False	1456.0	1456	88.6230	1778	2986	1	chr1A.!!$F4	1208
8	TraesCS1D01G429300	chr1A	582534769	582535564	795	False	832.0	832	85.7670	981	1775	1	chr1A.!!$F3	794
9	TraesCS1D01G429300	chr1A	582513982	582514543	561	False	584.0	584	85.8160	3000	3550	1	chr1A.!!$F2	550
10	TraesCS1D01G429300	chr1A	582566846	582567394	548	False	566.0	566	85.6620	3000	3537	1	chr1A.!!$F5	537
11	TraesCS1D01G429300	chr1A	576862719	576863521	802	True	431.0	431	76.9140	996	1798	1	chr1A.!!$R1	802

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
686	691	0.035881	CATGCGCCATCCCATCTACT	59.964	55.0	4.18	0.00	2.57	F
1320	2006	0.034896	ACGGCTGGAACGATGAACTT	59.965	50.0	0.00	34.93	2.66	F
1500	2261	0.907837	CACGTATTCTCGCTGACACG	59.092	55.0	0.00	38.54	4.49	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
2047	2869	0.944311	AACTCGAAACGTGCATCGCT	60.944	50.000	12.26	44.19	4.93	R
2145	2967	1.202758	TGGTCGACAGTGCCAATCTTT	60.203	47.619	18.91	0.00	2.52	R
2553	3378	1.750193	ATACTTCAACCACATGGCGG	58.250	50.000	0.00	39.32	6.13	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
43	44	3.508840	CGGGTCGATTGCTTGCCC	61.509	66.667	0.00	0.00	36.08	5.36
56	57	0.250295	CTTGCCCCTTGACGAGAACA	60.250	55.000	0.00	0.00	0.00	3.18
85	86	1.760029	GGGCAAACAAAAGAAGGTGGA	59.240	47.619	0.00	0.00	0.00	4.02
97	98	4.519906	AGAAGGTGGACAAAGGAGAAAA	57.480	40.909	0.00	0.00	0.00	2.29
110	111	0.890683	GAGAAAATGGTGCCACAGGG	59.109	55.000	0.00	0.00	37.18	4.45
113	114	1.901833	GAAAATGGTGCCACAGGGAAT	59.098	47.619	0.00	0.00	35.59	3.01
116	117	2.283101	GGTGCCACAGGGAATGCA	60.283	61.111	0.00	0.00	35.59	3.96
122	123	1.684248	GCCACAGGGAATGCATCTCTT	60.684	52.381	0.00	0.00	36.43	2.85
178	179	0.523072	CCTCTTGCATTGGGTTGTCG	59.477	55.000	0.00	0.00	0.00	4.35
241	242	4.689549	TCGGGGGTCTCTTGGCGA	62.690	66.667	0.00	0.00	0.00	5.54
270	271	5.334879	GCGATGTCAGGTTTTGTAGATGTTT	60.335	40.000	0.00	0.00	0.00	2.83
272	273	7.138736	CGATGTCAGGTTTTGTAGATGTTTTT	58.861	34.615	0.00	0.00	0.00	1.94
294	297	2.203788	AAGAGACTGGCGGGGTCA	60.204	61.111	0.00	0.00	36.29	4.02
318	321	1.677052	GTGCGGTTGTGGGTTTTCTTA	59.323	47.619	0.00	0.00	0.00	2.10
371	376	8.590719	TTTGTATTGGTTTTAATCCGGTTTTC	57.409	30.769	0.00	0.00	0.00	2.29
392	397	7.463961	TTTCCGTAAATTAACTGGGCAATTA	57.536	32.000	0.00	0.00	0.00	1.40
568	573	3.119566	AGCTTTCACCTACTAGCACGTAC	60.120	47.826	0.00	0.00	36.11	3.67
621	626	2.368655	AAAACAGCCGGATGATTTGC	57.631	45.000	29.47	0.00	0.00	3.68
641	646	1.221414	GGAAGAAATCATCCGCCTCG	58.779	55.000	0.00	0.00	0.00	4.63
676	681	4.820744	GGTGGGACCATGCGCCAT	62.821	66.667	4.18	0.00	38.42	4.40
677	682	3.211963	GTGGGACCATGCGCCATC	61.212	66.667	4.18	0.00	0.00	3.51
678	683	4.504596	TGGGACCATGCGCCATCC	62.505	66.667	4.18	6.35	0.00	3.51
680	685	4.504596	GGACCATGCGCCATCCCA	62.505	66.667	4.18	0.00	0.00	4.37
681	686	2.203394	GACCATGCGCCATCCCAT	60.203	61.111	4.18	0.00	0.00	4.00
682	687	2.203394	ACCATGCGCCATCCCATC	60.203	61.111	4.18	0.00	0.00	3.51
683	688	2.114625	CCATGCGCCATCCCATCT	59.885	61.111	4.18	0.00	0.00	2.90
684	689	1.376086	CCATGCGCCATCCCATCTA	59.624	57.895	4.18	0.00	0.00	1.98
685	690	0.957395	CCATGCGCCATCCCATCTAC	60.957	60.000	4.18	0.00	0.00	2.59
686	691	0.035881	CATGCGCCATCCCATCTACT	59.964	55.000	4.18	0.00	0.00	2.57
687	692	0.322975	ATGCGCCATCCCATCTACTC	59.677	55.000	4.18	0.00	0.00	2.59
688	693	1.004440	GCGCCATCCCATCTACTCC	60.004	63.158	0.00	0.00	0.00	3.85
689	694	1.758440	GCGCCATCCCATCTACTCCA	61.758	60.000	0.00	0.00	0.00	3.86
690	695	0.319728	CGCCATCCCATCTACTCCAG	59.680	60.000	0.00	0.00	0.00	3.86
691	696	1.428869	GCCATCCCATCTACTCCAGT	58.571	55.000	0.00	0.00	0.00	4.00
692	697	2.609747	GCCATCCCATCTACTCCAGTA	58.390	52.381	0.00	0.00	0.00	2.74
693	698	2.300437	GCCATCCCATCTACTCCAGTAC	59.700	54.545	0.00	0.00	0.00	2.73
700	705	6.923670	TCCCATCTACTCCAGTACTTATCTT	58.076	40.000	0.00	0.00	0.00	2.40
714	719	0.459585	TATCTTCAGGTCCAACGCGC	60.460	55.000	5.73	0.00	0.00	6.86
774	779	5.636543	AGAGTACAAGTTTTATCCGGTTTCG	59.363	40.000	0.00	0.00	0.00	3.46
785	790	3.891422	TCCGGTTTCGTGTGGTAATAT	57.109	42.857	0.00	0.00	33.95	1.28
819	824	3.331478	TTAAACGGGCGATCAAGGTAA	57.669	42.857	0.00	0.00	0.00	2.85
861	866	3.357079	CCAACACGCAGGCAGGAC	61.357	66.667	0.00	0.00	0.00	3.85
900	905	1.689582	ATCGTTCCTCCCCCTCACC	60.690	63.158	0.00	0.00	0.00	4.02
1023	1425	0.036732	ACATGGTGCACATCGACCTT	59.963	50.000	20.43	0.00	37.84	3.50
1320	2006	0.034896	ACGGCTGGAACGATGAACTT	59.965	50.000	0.00	0.00	34.93	2.66
1482	2243	3.649023	ACTACAAGGTGTTGTACATCCCA	59.351	43.478	0.00	0.00	45.48	4.37
1500	2261	0.907837	CACGTATTCTCGCTGACACG	59.092	55.000	0.00	0.00	38.54	4.49
1548	2330	5.508153	GCCGTATGTCATGTATGTCTTCTCT	60.508	44.000	0.00	0.00	0.00	3.10
1596	2378	3.120991	CGTCATTTGTTCGAGAAGGTGAC	60.121	47.826	10.45	10.45	33.32	3.67
1640	2425	3.097614	ACGATGTAAACTCCTGTAGCCT	58.902	45.455	0.00	0.00	0.00	4.58
1686	2471	1.384222	CCGCTTATTGGCAAGGGTCC	61.384	60.000	5.96	0.00	36.90	4.46
1840	2634	6.980051	AATTCGTTTGAGGTATTACTCACC	57.020	37.500	0.00	0.00	46.44	4.02
1846	2640	4.603094	TGAGGTATTACTCACCCTCAGA	57.397	45.455	3.20	0.00	46.45	3.27
1986	2808	3.202829	AGTTGCCAAAAGGACGAGTAA	57.797	42.857	0.00	0.00	0.00	2.24
2047	2869	7.985184	GGTCTATTGTGTAGTGAATACCAATGA	59.015	37.037	13.24	8.38	36.63	2.57
2140	2962	1.135402	CAACCTTGAGCCGGCATTTAC	60.135	52.381	31.54	14.36	0.00	2.01
2145	2967	3.442273	CCTTGAGCCGGCATTTACTAAAA	59.558	43.478	31.54	7.77	0.00	1.52
2553	3378	5.429130	ACTTACCTGGAAGCAACTAATAGC	58.571	41.667	0.00	0.00	0.00	2.97
2768	3596	4.876107	CCGTGCATCTTTTCTACATACCTT	59.124	41.667	0.00	0.00	0.00	3.50
2798	3627	6.928492	TGTTATTCCCTTTTTCATTTGTCTGC	59.072	34.615	0.00	0.00	0.00	4.26
2812	3641	0.727398	GTCTGCCTATGCACCGTTTC	59.273	55.000	0.00	0.00	44.23	2.78
2821	3650	0.108992	TGCACCGTTTCTAGGTAGCG	60.109	55.000	0.00	0.00	40.59	4.26
2879	3708	6.752815	TGTTTCCGTTTGGTTCATTAAAGAAC	59.247	34.615	13.83	13.83	45.50	3.01
2969	3799	6.381801	GTTTTGAAATCATCGTGGACATTCT	58.618	36.000	0.00	0.00	0.00	2.40
3017	3847	3.625313	TCGTTCTGAAATCAAGCAACACA	59.375	39.130	0.00	0.00	0.00	3.72
3018	3848	3.725740	CGTTCTGAAATCAAGCAACACAC	59.274	43.478	0.00	0.00	0.00	3.82
3176	4014	6.039717	GCATTCAGAAATATAAGGCAGGAACA	59.960	38.462	0.00	0.00	30.73	3.18
3218	4057	9.869757	ACTGCATATATAAAAGAACCAAAAACC	57.130	29.630	0.00	0.00	0.00	3.27
3389	4229	2.758979	AGATCGTCCTTTGTACCGACAT	59.241	45.455	0.00	0.00	34.86	3.06

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
7	8	1.228124	CCCAAACCAGGTCGAGCAA	60.228	57.895	18.15	0.00	0.00	3.91
32	33	0.960364	TCGTCAAGGGGCAAGCAATC	60.960	55.000	0.00	0.00	0.00	2.67
43	44	3.684788	CCTTATTGGTGTTCTCGTCAAGG	59.315	47.826	0.00	0.00	0.00	3.61
56	57	3.970640	TCTTTTGTTTGCCCCTTATTGGT	59.029	39.130	0.00	0.00	0.00	3.67
85	86	2.365293	GTGGCACCATTTTCTCCTTTGT	59.635	45.455	6.29	0.00	0.00	2.83
97	98	1.683365	GCATTCCCTGTGGCACCAT	60.683	57.895	16.26	0.00	0.00	3.55
116	117	3.118000	TCATCCATCAAGCAGCAAGAGAT	60.118	43.478	0.00	0.00	0.00	2.75
122	123	0.622136	AGGTCATCCATCAAGCAGCA	59.378	50.000	0.00	0.00	35.89	4.41
178	179	1.968493	TGACACCTCTCTACCCACAAC	59.032	52.381	0.00	0.00	0.00	3.32
241	242	3.740115	ACAAAACCTGACATCGCTACTT	58.260	40.909	0.00	0.00	0.00	2.24
270	271	1.508632	CCGCCAGTCTCTTCGAAAAA	58.491	50.000	0.00	0.00	0.00	1.94
272	273	1.292223	CCCGCCAGTCTCTTCGAAA	59.708	57.895	0.00	0.00	0.00	3.46
275	276	3.358076	GACCCCGCCAGTCTCTTCG	62.358	68.421	0.00	0.00	0.00	3.79
276	277	2.283529	TGACCCCGCCAGTCTCTTC	61.284	63.158	0.00	0.00	35.21	2.87
280	283	4.640690	AGGTGACCCCGCCAGTCT	62.641	66.667	0.00	0.00	45.32	3.24
318	321	9.587772	GAAACACATACTAACTACTCACATGAT	57.412	33.333	0.00	0.00	0.00	2.45
343	346	7.469537	ACCGGATTAAAACCAATACAAATGA	57.530	32.000	9.46	0.00	0.00	2.57
361	364	5.124297	CCAGTTAATTTACGGAAAACCGGAT	59.876	40.000	9.46	0.00	37.53	4.18
362	365	4.455190	CCAGTTAATTTACGGAAAACCGGA	59.545	41.667	9.46	1.13	37.53	5.14
371	376	7.272037	AGATAATTGCCCAGTTAATTTACGG	57.728	36.000	0.00	0.00	0.00	4.02
590	595	6.445357	TCCGGCTGTTTTTAAGATATTTCC	57.555	37.500	0.00	0.00	0.00	3.13
596	601	6.332630	CAAATCATCCGGCTGTTTTTAAGAT	58.667	36.000	10.82	0.00	0.00	2.40
625	630	1.227674	GGCGAGGCGGATGATTTCT	60.228	57.895	0.00	0.00	0.00	2.52
660	665	3.211963	GATGGCGCATGGTCCCAC	61.212	66.667	10.83	0.00	0.00	4.61
669	674	1.748403	GAGTAGATGGGATGGCGCA	59.252	57.895	10.83	0.00	41.50	6.09
673	678	3.850752	AGTACTGGAGTAGATGGGATGG	58.149	50.000	0.00	0.00	0.00	3.51
674	679	6.951198	AGATAAGTACTGGAGTAGATGGGATG	59.049	42.308	0.00	0.00	0.00	3.51
675	680	7.109901	AGATAAGTACTGGAGTAGATGGGAT	57.890	40.000	0.00	0.00	0.00	3.85
676	681	6.532119	AGATAAGTACTGGAGTAGATGGGA	57.468	41.667	0.00	0.00	0.00	4.37
677	682	6.778069	TGAAGATAAGTACTGGAGTAGATGGG	59.222	42.308	0.00	0.00	0.00	4.00
678	683	7.040062	CCTGAAGATAAGTACTGGAGTAGATGG	60.040	44.444	0.00	0.00	0.00	3.51
679	684	7.504238	ACCTGAAGATAAGTACTGGAGTAGATG	59.496	40.741	0.00	0.00	0.00	2.90
680	685	7.588169	ACCTGAAGATAAGTACTGGAGTAGAT	58.412	38.462	0.00	0.00	0.00	1.98
681	686	6.971340	ACCTGAAGATAAGTACTGGAGTAGA	58.029	40.000	0.00	0.00	0.00	2.59
682	687	6.263617	GGACCTGAAGATAAGTACTGGAGTAG	59.736	46.154	0.00	0.00	0.00	2.57
683	688	6.127793	GGACCTGAAGATAAGTACTGGAGTA	58.872	44.000	0.00	0.00	0.00	2.59
684	689	4.957327	GGACCTGAAGATAAGTACTGGAGT	59.043	45.833	0.00	0.00	0.00	3.85
685	690	4.956700	TGGACCTGAAGATAAGTACTGGAG	59.043	45.833	0.00	0.00	0.00	3.86
686	691	4.942944	TGGACCTGAAGATAAGTACTGGA	58.057	43.478	0.00	0.00	0.00	3.86
687	692	5.420409	GTTGGACCTGAAGATAAGTACTGG	58.580	45.833	0.00	0.00	0.00	4.00
688	693	5.103000	CGTTGGACCTGAAGATAAGTACTG	58.897	45.833	0.00	0.00	0.00	2.74
689	694	4.381718	GCGTTGGACCTGAAGATAAGTACT	60.382	45.833	0.00	0.00	0.00	2.73
690	695	3.864003	GCGTTGGACCTGAAGATAAGTAC	59.136	47.826	0.00	0.00	0.00	2.73
691	696	3.428452	CGCGTTGGACCTGAAGATAAGTA	60.428	47.826	0.00	0.00	0.00	2.24
692	697	2.674177	CGCGTTGGACCTGAAGATAAGT	60.674	50.000	0.00	0.00	0.00	2.24
693	698	1.927174	CGCGTTGGACCTGAAGATAAG	59.073	52.381	0.00	0.00	0.00	1.73
714	719	4.754372	ATATGCATTTATGAGTGGCACG	57.246	40.909	12.71	0.00	37.30	5.34
785	790	6.265196	TCGCCCGTTTAAATCTAGACCTATTA	59.735	38.462	0.00	0.00	0.00	0.98
819	824	1.628846	AGAACTTTGCTATGACCCGGT	59.371	47.619	0.00	0.00	0.00	5.28
856	861	7.674348	TGATGGATTAGTTATACCTAGGTCCTG	59.326	40.741	20.32	0.00	30.67	3.86
858	863	8.611051	ATGATGGATTAGTTATACCTAGGTCC	57.389	38.462	20.32	10.66	0.00	4.46
859	864	8.407064	CGATGATGGATTAGTTATACCTAGGTC	58.593	40.741	20.32	3.58	0.00	3.85
861	866	8.294954	ACGATGATGGATTAGTTATACCTAGG	57.705	38.462	7.41	7.41	0.00	3.02
867	872	7.093465	GGGAGGAACGATGATGGATTAGTTATA	60.093	40.741	0.00	0.00	0.00	0.98
900	905	3.929610	GAGATCGAGGAGGACTTGTTTTG	59.070	47.826	0.00	0.00	32.04	2.44
951	956	0.833949	GAGTAGGCTTTGAGAGGGGG	59.166	60.000	0.00	0.00	0.00	5.40
1249	1935	2.125793	GCCGTGAACGTCTACCCC	60.126	66.667	1.75	0.00	37.74	4.95
1320	2006	4.682320	GCGATATTGACAACCTTGACCCTA	60.682	45.833	0.00	0.00	0.00	3.53
1482	2243	0.800631	TCGTGTCAGCGAGAATACGT	59.199	50.000	14.75	0.00	39.04	3.57
1548	2330	1.124780	TCCAACGGTCTGTCCTTGAA	58.875	50.000	0.00	0.00	31.02	2.69
1596	2378	4.389576	GTTCCAACGGCAGCAGCG	62.390	66.667	0.00	0.00	43.41	5.18
1640	2425	2.294979	GCATGTGCTCATCAGGATCAA	58.705	47.619	0.00	0.00	38.21	2.57
1686	2471	1.814527	CGGGGAAGGAACGTAGAGG	59.185	63.158	0.00	0.00	0.00	3.69
1840	2634	8.558973	AGAAGAATAAATCAAAGTGTCTGAGG	57.441	34.615	0.00	0.00	0.00	3.86
1986	2808	4.471904	TGCCTAGACGAAAATGTGATCT	57.528	40.909	0.00	0.00	0.00	2.75
2047	2869	0.944311	AACTCGAAACGTGCATCGCT	60.944	50.000	12.26	0.00	44.19	4.93
2145	2967	1.202758	TGGTCGACAGTGCCAATCTTT	60.203	47.619	18.91	0.00	0.00	2.52
2160	2982	1.524621	GCTGTGGGATCCATGGTCG	60.525	63.158	15.23	0.00	35.28	4.79
2553	3378	1.750193	ATACTTCAACCACATGGCGG	58.250	50.000	0.00	0.00	39.32	6.13
2768	3596	8.869109	ACAAATGAAAAAGGGAATAACAGATCA	58.131	29.630	0.00	0.00	0.00	2.92
2798	3627	2.981859	ACCTAGAAACGGTGCATAGG	57.018	50.000	5.86	5.86	39.16	2.57
2812	3641	6.315393	ACATTGAATAAAACCACGCTACCTAG	59.685	38.462	0.00	0.00	0.00	3.02
2821	3650	6.811665	GCCTCCTTAACATTGAATAAAACCAC	59.188	38.462	0.00	0.00	0.00	4.16
3017	3847	3.062122	TGTGATGCATCATGTGTGAGT	57.938	42.857	30.89	0.00	39.30	3.41
3018	3848	4.632538	ATTGTGATGCATCATGTGTGAG	57.367	40.909	30.89	0.00	39.30	3.51
3048	3878	7.687941	ACTCAGGGAATTTATGTAGTTGTTG	57.312	36.000	0.00	0.00	0.00	3.33
3100	3933	5.059833	AGATGTTCTGTCCTGTTCTTTGTC	58.940	41.667	0.00	0.00	0.00	3.18
3491	4334	9.635404	AATATGGGAAACTAATCGACCAATAAA	57.365	29.630	0.00	0.00	0.00	1.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.