Multiple sequence alignment - TraesCS1D01G429100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G429100 chr1D 100.000 2329 0 0 1 2329 480971177 480973505 0.000000e+00 4301.0
1 TraesCS1D01G429100 chr1D 85.542 498 52 13 1 483 416091735 416092227 9.610000e-139 503.0
2 TraesCS1D01G429100 chr1D 96.503 286 10 0 1935 2220 415679205 415678920 7.530000e-130 473.0
3 TraesCS1D01G429100 chr1D 83.936 498 61 12 1 483 415748674 415749167 2.110000e-125 459.0
4 TraesCS1D01G429100 chr1D 87.532 393 29 14 945 1328 480555420 480555039 9.880000e-119 436.0
5 TraesCS1D01G429100 chr1D 94.554 202 11 0 1676 1877 236890291 236890492 1.740000e-81 313.0
6 TraesCS1D01G429100 chr1D 100.000 30 0 0 864 893 480555522 480555493 3.230000e-04 56.5
7 TraesCS1D01G429100 chr1A 89.356 1616 112 27 98 1671 577507913 577509510 0.000000e+00 1977.0
8 TraesCS1D01G429100 chr1A 84.739 498 57 12 1 483 513567803 513568296 4.500000e-132 481.0
9 TraesCS1D01G429100 chr1B 89.530 1022 55 20 423 1411 669191240 669192242 0.000000e+00 1247.0
10 TraesCS1D01G429100 chr1B 92.991 642 24 5 1047 1681 669336541 669335914 0.000000e+00 917.0
11 TraesCS1D01G429100 chr1B 96.108 334 8 2 554 883 669337082 669336750 7.320000e-150 540.0
12 TraesCS1D01G429100 chr1B 82.129 263 32 11 945 1197 668925587 668925330 6.520000e-51 211.0
13 TraesCS1D01G429100 chr6D 97.222 288 8 0 1933 2220 27531357 27531644 2.690000e-134 488.0
14 TraesCS1D01G429100 chr6D 97.491 279 7 0 1942 2220 411198160 411198438 5.820000e-131 477.0
15 TraesCS1D01G429100 chr6D 97.872 47 1 0 2211 2257 469275024 469274978 5.330000e-12 82.4
16 TraesCS1D01G429100 chr2D 97.213 287 6 2 1936 2220 6562883 6563169 3.480000e-133 484.0
17 TraesCS1D01G429100 chr2D 96.194 289 8 2 1933 2220 54725858 54726144 9.740000e-129 470.0
18 TraesCS1D01G429100 chr2D 94.500 200 11 0 1678 1877 349605730 349605531 2.250000e-80 309.0
19 TraesCS1D01G429100 chr3D 96.540 289 7 2 1933 2220 588790480 588790194 2.090000e-130 475.0
20 TraesCS1D01G429100 chr3D 96.181 288 10 1 1933 2220 461417843 461418129 9.740000e-129 470.0
21 TraesCS1D01G429100 chr3D 86.429 420 52 4 1 416 598361118 598361536 2.730000e-124 455.0
22 TraesCS1D01G429100 chr3D 88.235 204 19 5 1677 1876 43538628 43538426 2.990000e-59 239.0
23 TraesCS1D01G429100 chr3D 84.951 206 29 2 1674 1878 534220009 534219805 8.430000e-50 207.0
24 TraesCS1D01G429100 chr3D 84.135 208 25 7 1677 1880 530147297 530147094 6.570000e-46 195.0
25 TraesCS1D01G429100 chr4D 96.516 287 9 1 1935 2220 434974444 434974158 7.530000e-130 473.0
26 TraesCS1D01G429100 chr2A 84.394 487 68 6 1 483 598655536 598655054 2.710000e-129 472.0
27 TraesCS1D01G429100 chr5D 95.833 288 11 1 1933 2220 370086964 370086678 4.530000e-127 464.0
28 TraesCS1D01G429100 chr4A 83.162 487 74 8 3 482 170706606 170706121 2.750000e-119 438.0
29 TraesCS1D01G429100 chr4A 87.940 199 24 0 1678 1876 690247277 690247079 3.870000e-58 235.0
30 TraesCS1D01G429100 chr2B 82.787 488 78 5 1 484 531046768 531047253 4.600000e-117 431.0
31 TraesCS1D01G429100 chr3B 82.618 489 73 9 1 485 531791967 531792447 2.770000e-114 422.0
32 TraesCS1D01G429100 chr3B 85.784 204 29 0 1673 1876 751242673 751242876 1.400000e-52 217.0
33 TraesCS1D01G429100 chr3A 82.550 447 64 10 45 485 223531154 223531592 4.700000e-102 381.0
34 TraesCS1D01G429100 chr7D 93.500 200 11 1 1678 1877 503697627 503697824 1.750000e-76 296.0
35 TraesCS1D01G429100 chr7D 86.765 204 23 3 1676 1876 584772074 584771872 8.370000e-55 224.0
36 TraesCS1D01G429100 chr6B 93.243 74 5 0 2256 2329 101927350 101927423 2.450000e-20 110.0
37 TraesCS1D01G429100 chr6B 94.828 58 3 0 1883 1940 325255909 325255852 8.860000e-15 91.6
38 TraesCS1D01G429100 chr5B 93.243 74 5 0 2256 2329 378910976 378911049 2.450000e-20 110.0
39 TraesCS1D01G429100 chr7A 89.189 74 8 0 2256 2329 103054216 103054143 2.460000e-15 93.5
40 TraesCS1D01G429100 chr6A 94.737 38 2 0 2222 2259 614466485 614466448 2.500000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G429100 chr1D 480971177 480973505 2328 False 4301.0 4301 100.0000 1 2329 1 chr1D.!!$F4 2328
1 TraesCS1D01G429100 chr1A 577507913 577509510 1597 False 1977.0 1977 89.3560 98 1671 1 chr1A.!!$F2 1573
2 TraesCS1D01G429100 chr1B 669191240 669192242 1002 False 1247.0 1247 89.5300 423 1411 1 chr1B.!!$F1 988
3 TraesCS1D01G429100 chr1B 669335914 669337082 1168 True 728.5 917 94.5495 554 1681 2 chr1B.!!$R2 1127

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.038744 AGGAAGGTGGCATTGTCTGG 59.961 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1890 2000 0.030235 CATCATTGCACCCATCGCTG 59.97 55.0 0.0 0.0 0.0 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.672550 CGACGACATGGAGTCTCG 57.327 61.111 16.97 10.29 45.32 4.04
18 19 1.062685 CGACGACATGGAGTCTCGG 59.937 63.158 16.97 2.83 45.32 4.63
19 20 1.226717 GACGACATGGAGTCTCGGC 60.227 63.158 13.44 4.42 45.32 5.54
20 21 2.278206 CGACATGGAGTCTCGGCG 60.278 66.667 0.00 0.00 45.32 6.46
21 22 2.105128 GACATGGAGTCTCGGCGG 59.895 66.667 7.21 0.00 44.09 6.13
22 23 2.680352 ACATGGAGTCTCGGCGGT 60.680 61.111 7.21 0.00 0.00 5.68
23 24 2.202797 CATGGAGTCTCGGCGGTG 60.203 66.667 7.21 0.00 0.00 4.94
24 25 2.680352 ATGGAGTCTCGGCGGTGT 60.680 61.111 7.21 0.00 0.00 4.16
25 26 3.006756 ATGGAGTCTCGGCGGTGTG 62.007 63.158 7.21 0.00 0.00 3.82
26 27 4.436998 GGAGTCTCGGCGGTGTGG 62.437 72.222 7.21 0.00 0.00 4.17
47 48 2.028190 CGCAGGGCCTCTATGACG 59.972 66.667 0.95 0.00 0.00 4.35
48 49 2.423446 GCAGGGCCTCTATGACGG 59.577 66.667 0.95 0.00 0.00 4.79
49 50 2.134287 GCAGGGCCTCTATGACGGA 61.134 63.158 0.95 0.00 0.00 4.69
50 51 1.476007 GCAGGGCCTCTATGACGGAT 61.476 60.000 0.95 0.00 0.00 4.18
51 52 0.319728 CAGGGCCTCTATGACGGATG 59.680 60.000 0.95 0.00 0.00 3.51
52 53 1.004440 GGGCCTCTATGACGGATGC 60.004 63.158 0.84 0.00 0.00 3.91
53 54 1.373497 GGCCTCTATGACGGATGCG 60.373 63.158 4.58 4.58 0.00 4.73
54 55 1.364171 GCCTCTATGACGGATGCGT 59.636 57.895 13.64 13.64 0.00 5.24
55 56 0.941463 GCCTCTATGACGGATGCGTG 60.941 60.000 19.71 2.12 0.00 5.34
56 57 0.668535 CCTCTATGACGGATGCGTGA 59.331 55.000 19.71 9.93 0.00 4.35
57 58 1.270826 CCTCTATGACGGATGCGTGAT 59.729 52.381 19.71 17.91 0.00 3.06
58 59 2.323059 CTCTATGACGGATGCGTGATG 58.677 52.381 19.71 9.47 0.00 3.07
59 60 1.953686 TCTATGACGGATGCGTGATGA 59.046 47.619 19.71 11.70 0.00 2.92
60 61 2.558359 TCTATGACGGATGCGTGATGAT 59.442 45.455 19.71 6.21 0.00 2.45
61 62 1.505425 ATGACGGATGCGTGATGATG 58.495 50.000 19.71 0.00 0.00 3.07
62 63 0.530431 TGACGGATGCGTGATGATGG 60.530 55.000 19.71 0.00 0.00 3.51
63 64 0.249447 GACGGATGCGTGATGATGGA 60.249 55.000 19.71 0.00 0.00 3.41
64 65 0.530650 ACGGATGCGTGATGATGGAC 60.531 55.000 12.84 0.00 0.00 4.02
65 66 1.551503 CGGATGCGTGATGATGGACG 61.552 60.000 0.00 0.00 38.63 4.79
69 70 3.976375 CGTGATGATGGACGCGCG 61.976 66.667 30.96 30.96 33.62 6.86
70 71 2.885644 GTGATGATGGACGCGCGT 60.886 61.111 38.52 38.52 0.00 6.01
71 72 1.587876 GTGATGATGGACGCGCGTA 60.588 57.895 37.91 23.01 0.00 4.42
72 73 1.299089 TGATGATGGACGCGCGTAG 60.299 57.895 37.91 7.48 0.00 3.51
73 74 2.016704 GATGATGGACGCGCGTAGG 61.017 63.158 37.91 7.02 0.00 3.18
74 75 2.402282 GATGATGGACGCGCGTAGGA 62.402 60.000 37.91 22.54 0.00 2.94
75 76 2.011741 ATGATGGACGCGCGTAGGAA 62.012 55.000 37.91 21.39 0.00 3.36
76 77 1.944676 GATGGACGCGCGTAGGAAG 60.945 63.158 37.91 4.75 0.00 3.46
77 78 3.426117 ATGGACGCGCGTAGGAAGG 62.426 63.158 37.91 3.84 0.00 3.46
78 79 4.125695 GGACGCGCGTAGGAAGGT 62.126 66.667 37.91 10.91 0.00 3.50
79 80 2.879462 GACGCGCGTAGGAAGGTG 60.879 66.667 37.91 2.05 0.00 4.00
80 81 4.430765 ACGCGCGTAGGAAGGTGG 62.431 66.667 37.08 0.26 0.00 4.61
82 83 4.752879 GCGCGTAGGAAGGTGGCA 62.753 66.667 8.43 0.00 0.00 4.92
83 84 2.186903 CGCGTAGGAAGGTGGCAT 59.813 61.111 0.00 0.00 0.00 4.40
84 85 1.449601 CGCGTAGGAAGGTGGCATT 60.450 57.895 0.00 0.00 0.00 3.56
85 86 1.705337 CGCGTAGGAAGGTGGCATTG 61.705 60.000 0.00 0.00 0.00 2.82
86 87 0.676782 GCGTAGGAAGGTGGCATTGT 60.677 55.000 0.00 0.00 0.00 2.71
87 88 1.369625 CGTAGGAAGGTGGCATTGTC 58.630 55.000 0.00 0.00 0.00 3.18
88 89 1.066143 CGTAGGAAGGTGGCATTGTCT 60.066 52.381 0.00 0.00 0.00 3.41
89 90 2.359900 GTAGGAAGGTGGCATTGTCTG 58.640 52.381 0.00 0.00 0.00 3.51
90 91 0.038744 AGGAAGGTGGCATTGTCTGG 59.961 55.000 0.00 0.00 0.00 3.86
91 92 0.251341 GGAAGGTGGCATTGTCTGGT 60.251 55.000 0.00 0.00 0.00 4.00
92 93 0.883833 GAAGGTGGCATTGTCTGGTG 59.116 55.000 0.00 0.00 0.00 4.17
93 94 0.185901 AAGGTGGCATTGTCTGGTGT 59.814 50.000 0.00 0.00 0.00 4.16
94 95 0.185901 AGGTGGCATTGTCTGGTGTT 59.814 50.000 0.00 0.00 0.00 3.32
95 96 0.314935 GGTGGCATTGTCTGGTGTTG 59.685 55.000 0.00 0.00 0.00 3.33
96 97 1.032014 GTGGCATTGTCTGGTGTTGT 58.968 50.000 0.00 0.00 0.00 3.32
109 110 2.586635 GTTGTGGTGGCGTCGACA 60.587 61.111 17.16 0.00 0.00 4.35
110 111 2.174969 GTTGTGGTGGCGTCGACAA 61.175 57.895 17.16 0.00 34.65 3.18
115 116 3.712881 GTGGCGTCGACAACAGGC 61.713 66.667 17.16 11.83 0.00 4.85
119 120 2.738521 CGTCGACAACAGGCCTGG 60.739 66.667 35.42 21.48 34.19 4.45
155 158 2.546795 CGGTACCTGCTGAAGATGGATC 60.547 54.545 10.90 0.00 0.00 3.36
156 159 2.546795 GGTACCTGCTGAAGATGGATCG 60.547 54.545 4.06 0.00 0.00 3.69
168 172 1.676678 ATGGATCGGTGGAGACGGTG 61.677 60.000 0.00 0.00 0.00 4.94
270 274 3.818121 TTGGTTGAGGCGTCCGGTG 62.818 63.158 0.00 0.00 0.00 4.94
289 293 2.890945 GTGTTAGATGTTGGGCTTTGGT 59.109 45.455 0.00 0.00 0.00 3.67
294 298 1.270550 GATGTTGGGCTTTGGTGTGAG 59.729 52.381 0.00 0.00 0.00 3.51
319 323 3.762247 CAGGCGGCCCCAACAATG 61.762 66.667 17.02 0.99 35.39 2.82
325 329 4.740431 GCCCCAACAATGCGCACC 62.740 66.667 14.90 0.00 0.00 5.01
331 335 2.625823 AACAATGCGCACCCCTTCG 61.626 57.895 14.90 0.82 0.00 3.79
340 344 0.534203 GCACCCCTTCGTCAAGTTGA 60.534 55.000 0.08 0.08 0.00 3.18
344 348 2.236395 ACCCCTTCGTCAAGTTGATAGG 59.764 50.000 9.18 14.88 0.00 2.57
353 357 4.352887 GTCAAGTTGATAGGAGTAGCGAC 58.647 47.826 9.18 0.00 0.00 5.19
354 358 4.096682 GTCAAGTTGATAGGAGTAGCGACT 59.903 45.833 9.18 0.00 40.43 4.18
358 362 4.277174 AGTTGATAGGAGTAGCGACTGATG 59.723 45.833 3.45 0.00 37.80 3.07
370 374 1.399440 CGACTGATGTTGCCAAGATGG 59.601 52.381 0.00 0.00 41.55 3.51
390 394 6.438425 AGATGGTGGCTTCAAACTTATTGATT 59.562 34.615 0.00 0.00 0.00 2.57
392 396 6.825610 TGGTGGCTTCAAACTTATTGATTTT 58.174 32.000 0.00 0.00 0.00 1.82
414 418 7.941431 TTTTTACTTTGTAAGGTCTTGGTGA 57.059 32.000 0.00 0.00 0.00 4.02
458 463 0.107263 TCGCCCTGATGCAAATGCTA 60.107 50.000 6.97 0.00 42.66 3.49
471 477 3.332919 CAAATGCTAGGATCATCCTCCG 58.667 50.000 10.40 3.86 45.66 4.63
479 485 1.681793 GGATCATCCTCCGTTTCGAGA 59.318 52.381 0.00 0.00 32.53 4.04
560 572 7.331026 TGCATTAACAGAGCAGACTAGTAAAT 58.669 34.615 0.00 0.00 33.75 1.40
623 643 4.021719 TCAACGGGTAGGTAAGAGAACAAG 60.022 45.833 0.00 0.00 0.00 3.16
666 687 5.359576 AGAAACAGTTGACATAGCAAAACCA 59.640 36.000 0.00 0.00 0.00 3.67
732 754 2.203394 ACCAGCCACCAACTGCAG 60.203 61.111 13.48 13.48 33.65 4.41
913 987 1.600636 CGGCCGGCACATATCCATT 60.601 57.895 30.85 0.00 0.00 3.16
920 994 3.273434 CGGCACATATCCATTATCCAGG 58.727 50.000 0.00 0.00 0.00 4.45
995 1070 1.134670 GGACTCAGGACATACTGGCAC 60.135 57.143 0.00 0.00 38.98 5.01
1015 1112 1.212751 GCCATCCGAACCAAACAGC 59.787 57.895 0.00 0.00 0.00 4.40
1016 1113 1.523154 GCCATCCGAACCAAACAGCA 61.523 55.000 0.00 0.00 0.00 4.41
1017 1114 0.523072 CCATCCGAACCAAACAGCAG 59.477 55.000 0.00 0.00 0.00 4.24
1027 1124 2.159057 ACCAAACAGCAGAAGCAAAAGG 60.159 45.455 0.00 0.00 45.49 3.11
1044 1141 4.925390 AAAGGAGAAGAGCTGAAATCCT 57.075 40.909 0.00 0.00 38.82 3.24
1072 1169 2.278013 GGCGACCTGACGATCGAC 60.278 66.667 24.34 17.11 40.86 4.20
1524 1630 5.485353 TCCTTTCTATATAGGTCATGGCTGG 59.515 44.000 9.89 1.27 33.15 4.85
1602 1710 3.327757 AGCCTCTGTGATTGGTAGTTTGA 59.672 43.478 0.00 0.00 0.00 2.69
1651 1759 9.260002 AGCCAACAACTCTTTGTATTTAAATTG 57.740 29.630 5.91 0.00 45.69 2.32
1655 1763 6.866248 ACAACTCTTTGTATTTAAATTGCCCG 59.134 34.615 5.91 0.00 44.53 6.13
1682 1792 9.869667 AGGACATGAGAGTATATATACATACCC 57.130 37.037 22.00 12.30 35.74 3.69
1683 1793 9.642343 GGACATGAGAGTATATATACATACCCA 57.358 37.037 22.00 13.13 35.74 4.51
1686 1796 9.973450 CATGAGAGTATATATACATACCCAAGC 57.027 37.037 22.00 4.61 35.74 4.01
1687 1797 8.534954 TGAGAGTATATATACATACCCAAGCC 57.465 38.462 22.00 3.31 35.74 4.35
1688 1798 8.344546 TGAGAGTATATATACATACCCAAGCCT 58.655 37.037 22.00 0.01 35.74 4.58
1689 1799 8.770010 AGAGTATATATACATACCCAAGCCTC 57.230 38.462 22.00 8.41 35.74 4.70
1690 1800 8.570470 AGAGTATATATACATACCCAAGCCTCT 58.430 37.037 22.00 10.21 35.74 3.69
1691 1801 9.863650 GAGTATATATACATACCCAAGCCTCTA 57.136 37.037 22.00 0.00 35.74 2.43
1696 1806 8.728596 ATATACATACCCAAGCCTCTATATCC 57.271 38.462 0.00 0.00 0.00 2.59
1697 1807 3.769844 ACATACCCAAGCCTCTATATCCG 59.230 47.826 0.00 0.00 0.00 4.18
1698 1808 1.645710 ACCCAAGCCTCTATATCCGG 58.354 55.000 0.00 0.00 0.00 5.14
1699 1809 0.250513 CCCAAGCCTCTATATCCGGC 59.749 60.000 0.00 0.00 44.09 6.13
1700 1810 0.976641 CCAAGCCTCTATATCCGGCA 59.023 55.000 0.00 0.00 46.14 5.69
1701 1811 1.347707 CCAAGCCTCTATATCCGGCAA 59.652 52.381 0.00 0.00 46.14 4.52
1702 1812 2.613977 CCAAGCCTCTATATCCGGCAAG 60.614 54.545 0.00 0.00 46.14 4.01
1703 1813 1.270907 AGCCTCTATATCCGGCAAGG 58.729 55.000 0.00 0.00 46.14 3.61
1704 1814 0.977395 GCCTCTATATCCGGCAAGGT 59.023 55.000 0.00 0.00 43.25 3.50
1705 1815 1.348036 GCCTCTATATCCGGCAAGGTT 59.652 52.381 0.00 0.00 43.25 3.50
1706 1816 2.224548 GCCTCTATATCCGGCAAGGTTT 60.225 50.000 0.00 0.00 43.25 3.27
1707 1817 3.747708 GCCTCTATATCCGGCAAGGTTTT 60.748 47.826 0.00 0.00 43.25 2.43
1708 1818 4.461198 CCTCTATATCCGGCAAGGTTTTT 58.539 43.478 0.00 0.00 41.99 1.94
1709 1819 4.275936 CCTCTATATCCGGCAAGGTTTTTG 59.724 45.833 0.00 0.00 41.99 2.44
1710 1820 2.959507 ATATCCGGCAAGGTTTTTGC 57.040 45.000 0.00 3.39 44.22 3.68
1721 1831 5.729510 GCAAGGTTTTTGCCCTATTATTCA 58.270 37.500 0.54 0.00 39.38 2.57
1722 1832 6.348498 GCAAGGTTTTTGCCCTATTATTCAT 58.652 36.000 0.54 0.00 39.38 2.57
1723 1833 6.479990 GCAAGGTTTTTGCCCTATTATTCATC 59.520 38.462 0.54 0.00 39.38 2.92
1724 1834 6.731292 AGGTTTTTGCCCTATTATTCATCC 57.269 37.500 0.00 0.00 0.00 3.51
1725 1835 6.201591 AGGTTTTTGCCCTATTATTCATCCA 58.798 36.000 0.00 0.00 0.00 3.41
1726 1836 6.098266 AGGTTTTTGCCCTATTATTCATCCAC 59.902 38.462 0.00 0.00 0.00 4.02
1727 1837 6.098266 GGTTTTTGCCCTATTATTCATCCACT 59.902 38.462 0.00 0.00 0.00 4.00
1728 1838 7.364673 GGTTTTTGCCCTATTATTCATCCACTT 60.365 37.037 0.00 0.00 0.00 3.16
1729 1839 6.713762 TTTGCCCTATTATTCATCCACTTG 57.286 37.500 0.00 0.00 0.00 3.16
1730 1840 4.728772 TGCCCTATTATTCATCCACTTGG 58.271 43.478 0.00 0.00 0.00 3.61
1743 1853 3.496331 TCCACTTGGATGAAAAAGACCC 58.504 45.455 0.00 0.00 39.78 4.46
1744 1854 3.117322 TCCACTTGGATGAAAAAGACCCA 60.117 43.478 0.00 0.00 39.78 4.51
1745 1855 3.834231 CCACTTGGATGAAAAAGACCCAT 59.166 43.478 0.00 0.00 37.39 4.00
1746 1856 4.322198 CCACTTGGATGAAAAAGACCCATG 60.322 45.833 0.00 0.00 37.39 3.66
1747 1857 3.834231 ACTTGGATGAAAAAGACCCATGG 59.166 43.478 4.14 4.14 0.00 3.66
1748 1858 3.541242 TGGATGAAAAAGACCCATGGT 57.459 42.857 11.73 0.00 39.44 3.55
1749 1859 3.164268 TGGATGAAAAAGACCCATGGTG 58.836 45.455 11.73 4.77 35.25 4.17
1750 1860 3.181424 TGGATGAAAAAGACCCATGGTGA 60.181 43.478 11.73 0.00 35.25 4.02
1751 1861 3.831911 GGATGAAAAAGACCCATGGTGAA 59.168 43.478 11.73 0.00 35.25 3.18
1752 1862 4.467438 GGATGAAAAAGACCCATGGTGAAT 59.533 41.667 11.73 0.00 35.25 2.57
1753 1863 5.046376 GGATGAAAAAGACCCATGGTGAATT 60.046 40.000 11.73 0.00 35.25 2.17
1754 1864 5.885449 TGAAAAAGACCCATGGTGAATTT 57.115 34.783 11.73 5.31 35.25 1.82
1755 1865 6.245890 TGAAAAAGACCCATGGTGAATTTT 57.754 33.333 11.73 12.28 35.25 1.82
1756 1866 6.054295 TGAAAAAGACCCATGGTGAATTTTG 58.946 36.000 11.73 0.00 35.25 2.44
1757 1867 4.622260 AAAGACCCATGGTGAATTTTGG 57.378 40.909 11.73 0.00 35.25 3.28
1759 1869 3.859278 CCCATGGTGAATTTTGGGC 57.141 52.632 11.73 0.00 42.23 5.36
1760 1870 1.278537 CCCATGGTGAATTTTGGGCT 58.721 50.000 11.73 0.00 42.23 5.19
1761 1871 1.629861 CCCATGGTGAATTTTGGGCTT 59.370 47.619 11.73 0.00 42.23 4.35
1762 1872 2.616001 CCCATGGTGAATTTTGGGCTTG 60.616 50.000 11.73 0.00 42.23 4.01
1763 1873 2.616001 CCATGGTGAATTTTGGGCTTGG 60.616 50.000 2.57 0.00 0.00 3.61
1764 1874 0.396060 TGGTGAATTTTGGGCTTGGC 59.604 50.000 0.00 0.00 0.00 4.52
1765 1875 0.396060 GGTGAATTTTGGGCTTGGCA 59.604 50.000 0.00 0.00 0.00 4.92
1766 1876 1.511850 GTGAATTTTGGGCTTGGCAC 58.488 50.000 0.00 0.00 0.00 5.01
1767 1877 0.033228 TGAATTTTGGGCTTGGCACG 59.967 50.000 0.00 0.00 32.76 5.34
1768 1878 0.033366 GAATTTTGGGCTTGGCACGT 59.967 50.000 0.00 0.00 32.76 4.49
1769 1879 0.249826 AATTTTGGGCTTGGCACGTG 60.250 50.000 12.28 12.28 32.76 4.49
1770 1880 2.713927 ATTTTGGGCTTGGCACGTGC 62.714 55.000 32.15 32.15 32.76 5.34
1793 1903 2.721945 TTTTTGGTACCTGGCGGTG 58.278 52.632 14.36 0.00 45.18 4.94
1794 1904 0.106619 TTTTTGGTACCTGGCGGTGT 60.107 50.000 14.36 2.49 45.18 4.16
1795 1905 0.763652 TTTTGGTACCTGGCGGTGTA 59.236 50.000 14.36 1.58 45.18 2.90
1796 1906 0.322322 TTTGGTACCTGGCGGTGTAG 59.678 55.000 14.36 0.00 45.18 2.74
1797 1907 0.542467 TTGGTACCTGGCGGTGTAGA 60.542 55.000 14.36 0.00 45.18 2.59
1798 1908 0.542467 TGGTACCTGGCGGTGTAGAA 60.542 55.000 14.36 0.00 45.18 2.10
1799 1909 0.609662 GGTACCTGGCGGTGTAGAAA 59.390 55.000 4.06 0.00 45.18 2.52
1800 1910 1.673923 GGTACCTGGCGGTGTAGAAAC 60.674 57.143 4.06 1.09 45.18 2.78
1801 1911 0.244450 TACCTGGCGGTGTAGAAACG 59.756 55.000 10.60 0.00 45.18 3.60
1802 1912 1.290955 CCTGGCGGTGTAGAAACGA 59.709 57.895 0.00 0.00 0.00 3.85
1803 1913 0.736325 CCTGGCGGTGTAGAAACGAG 60.736 60.000 0.00 0.00 0.00 4.18
1804 1914 0.038526 CTGGCGGTGTAGAAACGAGT 60.039 55.000 0.00 0.00 0.00 4.18
1805 1915 0.319211 TGGCGGTGTAGAAACGAGTG 60.319 55.000 0.00 0.00 0.00 3.51
1806 1916 0.038892 GGCGGTGTAGAAACGAGTGA 60.039 55.000 0.00 0.00 0.00 3.41
1807 1917 1.403780 GGCGGTGTAGAAACGAGTGAT 60.404 52.381 0.00 0.00 0.00 3.06
1808 1918 1.654105 GCGGTGTAGAAACGAGTGATG 59.346 52.381 0.00 0.00 0.00 3.07
1809 1919 2.925306 GCGGTGTAGAAACGAGTGATGT 60.925 50.000 0.00 0.00 0.00 3.06
1810 1920 3.671433 GCGGTGTAGAAACGAGTGATGTA 60.671 47.826 0.00 0.00 0.00 2.29
1811 1921 4.669318 CGGTGTAGAAACGAGTGATGTAT 58.331 43.478 0.00 0.00 0.00 2.29
1812 1922 5.100259 CGGTGTAGAAACGAGTGATGTATT 58.900 41.667 0.00 0.00 0.00 1.89
1813 1923 5.229469 CGGTGTAGAAACGAGTGATGTATTC 59.771 44.000 0.00 0.00 0.00 1.75
1814 1924 6.097356 GGTGTAGAAACGAGTGATGTATTCA 58.903 40.000 0.00 0.00 0.00 2.57
1815 1925 6.253727 GGTGTAGAAACGAGTGATGTATTCAG 59.746 42.308 0.00 0.00 34.17 3.02
1816 1926 5.805486 TGTAGAAACGAGTGATGTATTCAGC 59.195 40.000 0.00 0.00 34.17 4.26
1817 1927 5.078411 AGAAACGAGTGATGTATTCAGCT 57.922 39.130 0.00 0.00 34.17 4.24
1818 1928 6.208988 AGAAACGAGTGATGTATTCAGCTA 57.791 37.500 0.00 0.00 34.17 3.32
1819 1929 6.810911 AGAAACGAGTGATGTATTCAGCTAT 58.189 36.000 0.00 0.00 34.17 2.97
1820 1930 7.268586 AGAAACGAGTGATGTATTCAGCTATT 58.731 34.615 0.00 0.00 34.17 1.73
1821 1931 7.766278 AGAAACGAGTGATGTATTCAGCTATTT 59.234 33.333 0.00 0.00 34.17 1.40
1822 1932 6.834959 ACGAGTGATGTATTCAGCTATTTG 57.165 37.500 0.00 0.00 34.17 2.32
1823 1933 5.755375 ACGAGTGATGTATTCAGCTATTTGG 59.245 40.000 0.00 0.00 34.17 3.28
1824 1934 5.755375 CGAGTGATGTATTCAGCTATTTGGT 59.245 40.000 0.00 0.00 34.17 3.67
1825 1935 6.258727 CGAGTGATGTATTCAGCTATTTGGTT 59.741 38.462 0.00 0.00 34.17 3.67
1826 1936 7.517417 CGAGTGATGTATTCAGCTATTTGGTTC 60.517 40.741 0.00 0.00 34.17 3.62
1827 1937 7.112122 AGTGATGTATTCAGCTATTTGGTTCA 58.888 34.615 0.00 0.00 34.17 3.18
1828 1938 7.611467 AGTGATGTATTCAGCTATTTGGTTCAA 59.389 33.333 0.00 0.00 34.17 2.69
1829 1939 8.243426 GTGATGTATTCAGCTATTTGGTTCAAA 58.757 33.333 0.00 0.00 34.77 2.69
1830 1940 8.970020 TGATGTATTCAGCTATTTGGTTCAAAT 58.030 29.630 10.21 10.21 44.74 2.32
1831 1941 9.807649 GATGTATTCAGCTATTTGGTTCAAATT 57.192 29.630 10.55 0.00 40.60 1.82
1833 1943 9.995003 TGTATTCAGCTATTTGGTTCAAATTTT 57.005 25.926 10.55 0.00 40.60 1.82
1849 1959 3.762674 TTTTTGAACGGGTTTGGCC 57.237 47.368 0.00 0.00 0.00 5.36
1850 1960 0.902531 TTTTTGAACGGGTTTGGCCA 59.097 45.000 0.00 0.00 39.65 5.36
1851 1961 1.123928 TTTTGAACGGGTTTGGCCAT 58.876 45.000 6.09 0.00 39.65 4.40
1852 1962 1.123928 TTTGAACGGGTTTGGCCATT 58.876 45.000 6.09 0.00 39.65 3.16
1853 1963 0.390860 TTGAACGGGTTTGGCCATTG 59.609 50.000 6.09 0.00 39.65 2.82
1854 1964 1.291906 GAACGGGTTTGGCCATTGG 59.708 57.895 6.09 0.00 39.65 3.16
1855 1965 1.458588 AACGGGTTTGGCCATTGGT 60.459 52.632 6.09 0.00 39.65 3.67
1856 1966 1.051556 AACGGGTTTGGCCATTGGTT 61.052 50.000 6.09 4.22 39.65 3.67
1857 1967 1.051556 ACGGGTTTGGCCATTGGTTT 61.052 50.000 6.09 0.00 39.65 3.27
1858 1968 0.602372 CGGGTTTGGCCATTGGTTTG 60.602 55.000 6.09 0.00 39.65 2.93
1859 1969 0.250684 GGGTTTGGCCATTGGTTTGG 60.251 55.000 6.09 0.00 39.65 3.28
1860 1970 0.472044 GGTTTGGCCATTGGTTTGGT 59.528 50.000 6.09 0.00 39.11 3.67
1861 1971 1.133945 GGTTTGGCCATTGGTTTGGTT 60.134 47.619 6.09 0.00 39.11 3.67
1862 1972 1.946081 GTTTGGCCATTGGTTTGGTTG 59.054 47.619 6.09 0.00 39.11 3.77
1863 1973 0.471617 TTGGCCATTGGTTTGGTTGG 59.528 50.000 6.09 0.00 39.11 3.77
1864 1974 4.377370 GCCATTGGTTTGGTTGGC 57.623 55.556 4.26 0.00 46.94 4.52
1868 1978 3.249986 CCATTGGTTTGGTTGGCATAG 57.750 47.619 0.00 0.00 31.74 2.23
1869 1979 2.620242 CATTGGTTTGGTTGGCATAGC 58.380 47.619 0.00 0.00 0.00 2.97
1870 1980 0.600557 TTGGTTTGGTTGGCATAGCG 59.399 50.000 0.00 0.00 0.00 4.26
1871 1981 0.538516 TGGTTTGGTTGGCATAGCGT 60.539 50.000 0.00 0.00 0.00 5.07
1872 1982 0.601057 GGTTTGGTTGGCATAGCGTT 59.399 50.000 0.00 0.00 0.00 4.84
1873 1983 1.000394 GGTTTGGTTGGCATAGCGTTT 60.000 47.619 0.00 0.00 0.00 3.60
1874 1984 2.547007 GGTTTGGTTGGCATAGCGTTTT 60.547 45.455 0.00 0.00 0.00 2.43
1875 1985 3.127589 GTTTGGTTGGCATAGCGTTTTT 58.872 40.909 0.00 0.00 0.00 1.94
1891 2001 1.464734 TTTTTGGCAGACAACGGACA 58.535 45.000 0.00 0.00 39.19 4.02
1892 2002 1.021202 TTTTGGCAGACAACGGACAG 58.979 50.000 0.00 0.00 39.19 3.51
1893 2003 1.444119 TTTGGCAGACAACGGACAGC 61.444 55.000 0.00 0.00 39.19 4.40
1894 2004 3.414700 GGCAGACAACGGACAGCG 61.415 66.667 0.00 0.00 0.00 5.18
1895 2005 2.355837 GCAGACAACGGACAGCGA 60.356 61.111 0.00 0.00 0.00 4.93
1896 2006 1.738099 GCAGACAACGGACAGCGAT 60.738 57.895 0.00 0.00 0.00 4.58
1897 2007 1.959899 GCAGACAACGGACAGCGATG 61.960 60.000 0.00 0.00 0.00 3.84
1898 2008 1.079819 AGACAACGGACAGCGATGG 60.080 57.895 5.32 0.00 0.00 3.51
1899 2009 2.047274 ACAACGGACAGCGATGGG 60.047 61.111 5.32 0.00 0.00 4.00
1900 2010 2.047274 CAACGGACAGCGATGGGT 60.047 61.111 5.32 0.00 0.00 4.51
1901 2011 2.047274 AACGGACAGCGATGGGTG 60.047 61.111 5.32 5.28 46.91 4.61
1902 2012 4.760047 ACGGACAGCGATGGGTGC 62.760 66.667 5.32 0.25 45.46 5.01
1903 2013 4.758251 CGGACAGCGATGGGTGCA 62.758 66.667 5.32 0.00 45.46 4.57
1904 2014 2.359850 GGACAGCGATGGGTGCAA 60.360 61.111 5.32 0.00 45.46 4.08
1905 2015 1.750399 GGACAGCGATGGGTGCAAT 60.750 57.895 5.32 0.00 45.46 3.56
1906 2016 1.430632 GACAGCGATGGGTGCAATG 59.569 57.895 5.32 0.00 45.46 2.82
1907 2017 1.002257 ACAGCGATGGGTGCAATGA 60.002 52.632 5.32 0.00 45.46 2.57
1908 2018 0.394762 ACAGCGATGGGTGCAATGAT 60.395 50.000 5.32 0.00 45.46 2.45
1909 2019 0.030235 CAGCGATGGGTGCAATGATG 59.970 55.000 0.00 0.00 34.49 3.07
1910 2020 1.105167 AGCGATGGGTGCAATGATGG 61.105 55.000 0.00 0.00 33.85 3.51
1911 2021 1.102809 GCGATGGGTGCAATGATGGA 61.103 55.000 0.00 0.00 0.00 3.41
1912 2022 1.612676 CGATGGGTGCAATGATGGAT 58.387 50.000 0.00 0.00 0.00 3.41
1913 2023 1.268625 CGATGGGTGCAATGATGGATG 59.731 52.381 0.00 0.00 0.00 3.51
1914 2024 2.313317 GATGGGTGCAATGATGGATGT 58.687 47.619 0.00 0.00 0.00 3.06
1915 2025 2.234896 TGGGTGCAATGATGGATGTT 57.765 45.000 0.00 0.00 0.00 2.71
1916 2026 2.538222 TGGGTGCAATGATGGATGTTT 58.462 42.857 0.00 0.00 0.00 2.83
1917 2027 3.706183 TGGGTGCAATGATGGATGTTTA 58.294 40.909 0.00 0.00 0.00 2.01
1918 2028 3.446873 TGGGTGCAATGATGGATGTTTAC 59.553 43.478 0.00 0.00 0.00 2.01
1919 2029 3.181476 GGGTGCAATGATGGATGTTTACC 60.181 47.826 0.00 0.00 0.00 2.85
1920 2030 3.181476 GGTGCAATGATGGATGTTTACCC 60.181 47.826 0.00 0.00 0.00 3.69
1921 2031 2.687425 TGCAATGATGGATGTTTACCCG 59.313 45.455 0.00 0.00 0.00 5.28
1922 2032 2.543653 GCAATGATGGATGTTTACCCGC 60.544 50.000 0.00 0.00 0.00 6.13
1923 2033 1.593196 ATGATGGATGTTTACCCGCG 58.407 50.000 0.00 0.00 0.00 6.46
1924 2034 0.250793 TGATGGATGTTTACCCGCGT 59.749 50.000 4.92 0.00 0.00 6.01
1925 2035 0.655733 GATGGATGTTTACCCGCGTG 59.344 55.000 4.92 0.00 0.00 5.34
1926 2036 0.250793 ATGGATGTTTACCCGCGTGA 59.749 50.000 4.92 0.00 0.00 4.35
1927 2037 0.035036 TGGATGTTTACCCGCGTGAA 59.965 50.000 4.92 0.00 0.00 3.18
1928 2038 0.725117 GGATGTTTACCCGCGTGAAG 59.275 55.000 4.92 0.00 0.00 3.02
1929 2039 0.096454 GATGTTTACCCGCGTGAAGC 59.904 55.000 4.92 0.00 43.95 3.86
1939 2049 2.282462 CGTGAAGCAAAGGCCCCT 60.282 61.111 0.00 0.00 42.56 4.79
1940 2050 2.335712 CGTGAAGCAAAGGCCCCTC 61.336 63.158 0.00 0.00 42.56 4.30
1941 2051 1.979155 GTGAAGCAAAGGCCCCTCC 60.979 63.158 0.00 0.00 42.56 4.30
1942 2052 2.363018 GAAGCAAAGGCCCCTCCC 60.363 66.667 0.00 0.00 42.56 4.30
1943 2053 3.965026 GAAGCAAAGGCCCCTCCCC 62.965 68.421 0.00 0.00 42.56 4.81
1946 2056 3.599933 CAAAGGCCCCTCCCCCAA 61.600 66.667 0.00 0.00 34.51 4.12
1947 2057 3.600981 AAAGGCCCCTCCCCCAAC 61.601 66.667 0.00 0.00 34.51 3.77
1951 2061 4.382541 GCCCCTCCCCCAACCTTG 62.383 72.222 0.00 0.00 0.00 3.61
1964 2074 2.543430 CCAACCTTGGCAAATTCAAACG 59.457 45.455 0.00 0.00 42.21 3.60
1965 2075 3.194062 CAACCTTGGCAAATTCAAACGT 58.806 40.909 0.00 0.00 0.00 3.99
1966 2076 4.363999 CAACCTTGGCAAATTCAAACGTA 58.636 39.130 0.00 0.00 0.00 3.57
1967 2077 4.237349 ACCTTGGCAAATTCAAACGTAG 57.763 40.909 0.00 0.00 0.00 3.51
1968 2078 8.830176 CCAACCTTGGCAAATTCAAACGTAGT 62.830 42.308 0.00 0.00 42.95 2.73
1979 2089 4.489249 ACGTAGTTCATTCCCGCG 57.511 55.556 0.00 0.00 37.78 6.46
1980 2090 1.808390 ACGTAGTTCATTCCCGCGC 60.808 57.895 0.00 0.00 37.78 6.86
1981 2091 2.522638 CGTAGTTCATTCCCGCGCC 61.523 63.158 0.00 0.00 0.00 6.53
1982 2092 2.178235 GTAGTTCATTCCCGCGCCC 61.178 63.158 0.00 0.00 0.00 6.13
1983 2093 2.661066 TAGTTCATTCCCGCGCCCA 61.661 57.895 0.00 0.00 0.00 5.36
1984 2094 2.186602 TAGTTCATTCCCGCGCCCAA 62.187 55.000 0.00 0.00 0.00 4.12
1985 2095 2.282532 TTCATTCCCGCGCCCAAA 60.283 55.556 0.00 0.00 0.00 3.28
1986 2096 1.903890 TTCATTCCCGCGCCCAAAA 60.904 52.632 0.00 0.00 0.00 2.44
1987 2097 1.464376 TTCATTCCCGCGCCCAAAAA 61.464 50.000 0.00 0.00 0.00 1.94
1988 2098 1.217779 CATTCCCGCGCCCAAAAAT 59.782 52.632 0.00 0.00 0.00 1.82
1989 2099 0.457851 CATTCCCGCGCCCAAAAATA 59.542 50.000 0.00 0.00 0.00 1.40
1990 2100 1.134965 CATTCCCGCGCCCAAAAATAA 60.135 47.619 0.00 0.00 0.00 1.40
1991 2101 0.966920 TTCCCGCGCCCAAAAATAAA 59.033 45.000 0.00 0.00 0.00 1.40
1992 2102 0.244178 TCCCGCGCCCAAAAATAAAC 59.756 50.000 0.00 0.00 0.00 2.01
1993 2103 1.073768 CCCGCGCCCAAAAATAAACG 61.074 55.000 0.00 0.00 0.00 3.60
1994 2104 1.679187 CCGCGCCCAAAAATAAACGC 61.679 55.000 0.00 0.00 42.69 4.84
1995 2105 1.679187 CGCGCCCAAAAATAAACGCC 61.679 55.000 0.00 0.00 43.15 5.68
1996 2106 0.667792 GCGCCCAAAAATAAACGCCA 60.668 50.000 0.00 0.00 40.43 5.69
1997 2107 1.064582 CGCCCAAAAATAAACGCCAC 58.935 50.000 0.00 0.00 0.00 5.01
1998 2108 1.603172 CGCCCAAAAATAAACGCCACA 60.603 47.619 0.00 0.00 0.00 4.17
1999 2109 2.484889 GCCCAAAAATAAACGCCACAA 58.515 42.857 0.00 0.00 0.00 3.33
2000 2110 3.070748 GCCCAAAAATAAACGCCACAAT 58.929 40.909 0.00 0.00 0.00 2.71
2001 2111 3.124466 GCCCAAAAATAAACGCCACAATC 59.876 43.478 0.00 0.00 0.00 2.67
2002 2112 3.682377 CCCAAAAATAAACGCCACAATCC 59.318 43.478 0.00 0.00 0.00 3.01
2003 2113 3.366422 CCAAAAATAAACGCCACAATCCG 59.634 43.478 0.00 0.00 0.00 4.18
2004 2114 2.931512 AAATAAACGCCACAATCCGG 57.068 45.000 0.00 0.00 0.00 5.14
2005 2115 0.454196 AATAAACGCCACAATCCGGC 59.546 50.000 0.00 0.00 46.62 6.13
2010 2120 2.513666 GCCACAATCCGGCGATCA 60.514 61.111 9.30 0.00 40.35 2.92
2011 2121 2.112198 GCCACAATCCGGCGATCAA 61.112 57.895 9.30 0.00 40.35 2.57
2012 2122 2.016961 CCACAATCCGGCGATCAAG 58.983 57.895 9.30 0.00 0.00 3.02
2013 2123 1.353103 CACAATCCGGCGATCAAGC 59.647 57.895 9.30 0.00 0.00 4.01
2014 2124 2.173669 ACAATCCGGCGATCAAGCG 61.174 57.895 9.30 0.00 38.18 4.68
2015 2125 2.588877 AATCCGGCGATCAAGCGG 60.589 61.111 9.30 0.00 38.18 5.52
2016 2126 3.385749 AATCCGGCGATCAAGCGGT 62.386 57.895 9.30 0.00 38.18 5.68
2017 2127 4.812476 TCCGGCGATCAAGCGGTG 62.812 66.667 9.30 0.00 38.18 4.94
2018 2128 4.812476 CCGGCGATCAAGCGGTGA 62.812 66.667 9.30 0.00 41.67 4.02
2024 2134 2.586079 ATCAAGCGGTGATCGGCG 60.586 61.111 0.00 0.00 44.01 6.46
2025 2135 3.076258 ATCAAGCGGTGATCGGCGA 62.076 57.895 13.87 13.87 44.01 5.54
2026 2136 2.369257 ATCAAGCGGTGATCGGCGAT 62.369 55.000 24.26 24.26 44.01 4.58
2027 2137 2.279517 AAGCGGTGATCGGCGATC 60.280 61.111 36.07 36.07 43.21 3.69
2028 2138 4.630785 AGCGGTGATCGGCGATCG 62.631 66.667 35.97 28.39 41.51 3.69
2037 2147 3.733236 TCGGCGATCGATGAAAAGT 57.267 47.368 21.57 0.00 43.74 2.66
2038 2148 2.004583 TCGGCGATCGATGAAAAGTT 57.995 45.000 21.57 0.00 43.74 2.66
2039 2149 1.924524 TCGGCGATCGATGAAAAGTTC 59.075 47.619 21.57 0.00 43.74 3.01
2040 2150 1.658596 CGGCGATCGATGAAAAGTTCA 59.341 47.619 21.57 0.00 45.01 3.18
2041 2151 2.285256 CGGCGATCGATGAAAAGTTCAG 60.285 50.000 21.57 0.00 43.98 3.02
2042 2152 2.537730 GGCGATCGATGAAAAGTTCAGC 60.538 50.000 21.57 0.00 43.98 4.26
2052 2162 7.623268 GATGAAAAGTTCAGCGTACAAAAAT 57.377 32.000 0.00 0.00 43.98 1.82
2053 2163 7.623268 ATGAAAAGTTCAGCGTACAAAAATC 57.377 32.000 0.00 0.00 43.98 2.17
2054 2164 6.556212 TGAAAAGTTCAGCGTACAAAAATCA 58.444 32.000 0.00 0.00 34.08 2.57
2055 2165 6.690957 TGAAAAGTTCAGCGTACAAAAATCAG 59.309 34.615 0.00 0.00 34.08 2.90
2056 2166 6.371809 AAAGTTCAGCGTACAAAAATCAGA 57.628 33.333 0.00 0.00 0.00 3.27
2057 2167 6.371809 AAGTTCAGCGTACAAAAATCAGAA 57.628 33.333 0.00 0.00 0.00 3.02
2058 2168 5.748592 AGTTCAGCGTACAAAAATCAGAAC 58.251 37.500 0.00 0.00 34.61 3.01
2059 2169 5.295787 AGTTCAGCGTACAAAAATCAGAACA 59.704 36.000 0.00 0.00 36.29 3.18
2060 2170 5.342806 TCAGCGTACAAAAATCAGAACAG 57.657 39.130 0.00 0.00 0.00 3.16
2061 2171 5.053811 TCAGCGTACAAAAATCAGAACAGA 58.946 37.500 0.00 0.00 0.00 3.41
2062 2172 5.525745 TCAGCGTACAAAAATCAGAACAGAA 59.474 36.000 0.00 0.00 0.00 3.02
2063 2173 6.037720 TCAGCGTACAAAAATCAGAACAGAAA 59.962 34.615 0.00 0.00 0.00 2.52
2064 2174 6.140737 CAGCGTACAAAAATCAGAACAGAAAC 59.859 38.462 0.00 0.00 0.00 2.78
2065 2175 5.113529 GCGTACAAAAATCAGAACAGAAACG 59.886 40.000 0.00 0.00 0.00 3.60
2066 2176 5.113529 CGTACAAAAATCAGAACAGAAACGC 59.886 40.000 0.00 0.00 0.00 4.84
2067 2177 4.035017 ACAAAAATCAGAACAGAAACGCG 58.965 39.130 3.53 3.53 0.00 6.01
2068 2178 2.316119 AAATCAGAACAGAAACGCGC 57.684 45.000 5.73 0.00 0.00 6.86
2069 2179 1.225855 AATCAGAACAGAAACGCGCA 58.774 45.000 5.73 0.00 0.00 6.09
2070 2180 1.442769 ATCAGAACAGAAACGCGCAT 58.557 45.000 5.73 0.00 0.00 4.73
2071 2181 0.790207 TCAGAACAGAAACGCGCATC 59.210 50.000 5.73 4.50 0.00 3.91
2072 2182 0.512518 CAGAACAGAAACGCGCATCA 59.487 50.000 5.73 0.00 0.00 3.07
2073 2183 0.792640 AGAACAGAAACGCGCATCAG 59.207 50.000 5.73 4.09 0.00 2.90
2074 2184 0.790207 GAACAGAAACGCGCATCAGA 59.210 50.000 5.73 0.00 0.00 3.27
2075 2185 0.512952 AACAGAAACGCGCATCAGAC 59.487 50.000 5.73 0.00 0.00 3.51
2076 2186 1.057822 CAGAAACGCGCATCAGACG 59.942 57.895 5.73 0.00 0.00 4.18
2077 2187 2.094659 AGAAACGCGCATCAGACGG 61.095 57.895 5.73 0.00 0.00 4.79
2078 2188 3.702334 GAAACGCGCATCAGACGGC 62.702 63.158 5.73 0.00 0.00 5.68
2084 2194 2.583593 GCATCAGACGGCGAGGTC 60.584 66.667 16.62 0.00 37.19 3.85
2085 2195 2.278206 CATCAGACGGCGAGGTCG 60.278 66.667 16.62 0.00 41.81 4.79
2086 2196 3.518998 ATCAGACGGCGAGGTCGG 61.519 66.667 16.62 1.12 41.81 4.79
2132 2242 4.452733 CGGGCTTGACGGGGTCTC 62.453 72.222 0.00 0.00 33.15 3.36
2133 2243 3.003763 GGGCTTGACGGGGTCTCT 61.004 66.667 0.00 0.00 33.15 3.10
2134 2244 2.266055 GGCTTGACGGGGTCTCTG 59.734 66.667 0.00 0.00 33.15 3.35
2135 2245 2.584391 GGCTTGACGGGGTCTCTGT 61.584 63.158 0.00 0.00 37.76 3.41
2136 2246 1.374758 GCTTGACGGGGTCTCTGTG 60.375 63.158 0.00 0.00 34.56 3.66
2137 2247 1.374758 CTTGACGGGGTCTCTGTGC 60.375 63.158 0.00 0.00 34.56 4.57
2138 2248 1.821061 CTTGACGGGGTCTCTGTGCT 61.821 60.000 0.00 0.00 34.56 4.40
2139 2249 1.407656 TTGACGGGGTCTCTGTGCTT 61.408 55.000 0.00 0.00 34.56 3.91
2140 2250 1.374758 GACGGGGTCTCTGTGCTTG 60.375 63.158 0.00 0.00 34.56 4.01
2141 2251 2.046892 CGGGGTCTCTGTGCTTGG 60.047 66.667 0.00 0.00 0.00 3.61
2142 2252 2.360475 GGGGTCTCTGTGCTTGGC 60.360 66.667 0.00 0.00 0.00 4.52
2143 2253 2.743928 GGGTCTCTGTGCTTGGCG 60.744 66.667 0.00 0.00 0.00 5.69
2144 2254 2.743928 GGTCTCTGTGCTTGGCGG 60.744 66.667 0.00 0.00 0.00 6.13
2145 2255 2.031163 GTCTCTGTGCTTGGCGGT 59.969 61.111 0.00 0.00 0.00 5.68
2146 2256 2.031012 TCTCTGTGCTTGGCGGTG 59.969 61.111 0.00 0.00 0.00 4.94
2147 2257 2.281070 CTCTGTGCTTGGCGGTGT 60.281 61.111 0.00 0.00 0.00 4.16
2148 2258 2.591429 TCTGTGCTTGGCGGTGTG 60.591 61.111 0.00 0.00 0.00 3.82
2149 2259 3.663176 CTGTGCTTGGCGGTGTGG 61.663 66.667 0.00 0.00 0.00 4.17
2152 2262 4.892965 TGCTTGGCGGTGTGGCTT 62.893 61.111 0.00 0.00 45.14 4.35
2153 2263 4.043200 GCTTGGCGGTGTGGCTTC 62.043 66.667 0.00 0.00 45.14 3.86
2154 2264 2.281761 CTTGGCGGTGTGGCTTCT 60.282 61.111 0.00 0.00 45.14 2.85
2155 2265 2.594303 TTGGCGGTGTGGCTTCTG 60.594 61.111 0.00 0.00 45.14 3.02
2160 2270 3.730761 GGTGTGGCTTCTGCGCTG 61.731 66.667 9.73 8.88 40.82 5.18
2161 2271 4.395583 GTGTGGCTTCTGCGCTGC 62.396 66.667 9.73 7.84 40.82 5.25
2181 2291 4.819761 GCAGTCTCGGCGGCATCA 62.820 66.667 10.53 0.00 0.00 3.07
2182 2292 2.107750 CAGTCTCGGCGGCATCAT 59.892 61.111 10.53 0.00 0.00 2.45
2183 2293 1.363807 CAGTCTCGGCGGCATCATA 59.636 57.895 10.53 0.00 0.00 2.15
2184 2294 0.665670 CAGTCTCGGCGGCATCATAG 60.666 60.000 10.53 0.00 0.00 2.23
2185 2295 1.373497 GTCTCGGCGGCATCATAGG 60.373 63.158 10.53 0.00 0.00 2.57
2186 2296 1.832608 TCTCGGCGGCATCATAGGT 60.833 57.895 10.53 0.00 0.00 3.08
2187 2297 1.373497 CTCGGCGGCATCATAGGTC 60.373 63.158 10.53 0.00 0.00 3.85
2188 2298 2.734723 CGGCGGCATCATAGGTCG 60.735 66.667 10.53 0.00 0.00 4.79
2189 2299 2.357517 GGCGGCATCATAGGTCGG 60.358 66.667 3.07 0.00 0.00 4.79
2190 2300 2.357517 GCGGCATCATAGGTCGGG 60.358 66.667 0.00 0.00 0.00 5.14
2191 2301 2.357517 CGGCATCATAGGTCGGGC 60.358 66.667 0.00 0.00 0.00 6.13
2192 2302 2.872388 CGGCATCATAGGTCGGGCT 61.872 63.158 0.00 0.00 0.00 5.19
2193 2303 1.451936 GGCATCATAGGTCGGGCTT 59.548 57.895 0.00 0.00 0.00 4.35
2194 2304 0.886490 GGCATCATAGGTCGGGCTTG 60.886 60.000 0.00 0.00 0.00 4.01
2195 2305 0.179045 GCATCATAGGTCGGGCTTGT 60.179 55.000 0.00 0.00 0.00 3.16
2196 2306 1.747206 GCATCATAGGTCGGGCTTGTT 60.747 52.381 0.00 0.00 0.00 2.83
2197 2307 1.942657 CATCATAGGTCGGGCTTGTTG 59.057 52.381 0.00 0.00 0.00 3.33
2198 2308 0.251916 TCATAGGTCGGGCTTGTTGG 59.748 55.000 0.00 0.00 0.00 3.77
2199 2309 1.077716 ATAGGTCGGGCTTGTTGGC 60.078 57.895 0.00 0.00 40.96 4.52
2200 2310 2.869503 ATAGGTCGGGCTTGTTGGCG 62.870 60.000 0.00 0.00 42.84 5.69
2229 2339 4.379243 CGCGTGGGGAGTGCTTCT 62.379 66.667 0.00 0.00 0.00 2.85
2230 2340 2.978824 GCGTGGGGAGTGCTTCTA 59.021 61.111 0.00 0.00 0.00 2.10
2231 2341 1.522569 GCGTGGGGAGTGCTTCTAT 59.477 57.895 0.00 0.00 0.00 1.98
2232 2342 0.107654 GCGTGGGGAGTGCTTCTATT 60.108 55.000 0.00 0.00 0.00 1.73
2233 2343 1.656652 CGTGGGGAGTGCTTCTATTG 58.343 55.000 0.00 0.00 0.00 1.90
2234 2344 1.207089 CGTGGGGAGTGCTTCTATTGA 59.793 52.381 0.00 0.00 0.00 2.57
2235 2345 2.354704 CGTGGGGAGTGCTTCTATTGAA 60.355 50.000 0.00 0.00 0.00 2.69
2236 2346 3.686016 GTGGGGAGTGCTTCTATTGAAA 58.314 45.455 0.00 0.00 0.00 2.69
2237 2347 4.079253 GTGGGGAGTGCTTCTATTGAAAA 58.921 43.478 0.00 0.00 0.00 2.29
2238 2348 4.079253 TGGGGAGTGCTTCTATTGAAAAC 58.921 43.478 0.00 0.00 0.00 2.43
2239 2349 4.079253 GGGGAGTGCTTCTATTGAAAACA 58.921 43.478 5.58 0.00 0.00 2.83
2240 2350 4.522789 GGGGAGTGCTTCTATTGAAAACAA 59.477 41.667 5.58 0.00 0.00 2.83
2241 2351 5.010617 GGGGAGTGCTTCTATTGAAAACAAA 59.989 40.000 0.00 0.00 0.00 2.83
2242 2352 6.462347 GGGGAGTGCTTCTATTGAAAACAAAA 60.462 38.462 0.00 0.00 0.00 2.44
2243 2353 7.154656 GGGAGTGCTTCTATTGAAAACAAAAT 58.845 34.615 0.00 0.00 0.00 1.82
2244 2354 7.116805 GGGAGTGCTTCTATTGAAAACAAAATG 59.883 37.037 0.00 0.00 0.00 2.32
2245 2355 7.867403 GGAGTGCTTCTATTGAAAACAAAATGA 59.133 33.333 0.00 0.00 0.00 2.57
2246 2356 8.579682 AGTGCTTCTATTGAAAACAAAATGAC 57.420 30.769 0.00 0.00 0.00 3.06
2247 2357 8.196771 AGTGCTTCTATTGAAAACAAAATGACA 58.803 29.630 0.00 0.00 0.00 3.58
2248 2358 8.268738 GTGCTTCTATTGAAAACAAAATGACAC 58.731 33.333 0.00 0.00 0.00 3.67
2249 2359 7.437862 TGCTTCTATTGAAAACAAAATGACACC 59.562 33.333 0.00 0.00 0.00 4.16
2250 2360 7.437862 GCTTCTATTGAAAACAAAATGACACCA 59.562 33.333 0.00 0.00 0.00 4.17
2251 2361 9.480053 CTTCTATTGAAAACAAAATGACACCAT 57.520 29.630 0.00 0.00 33.66 3.55
2252 2362 9.829507 TTCTATTGAAAACAAAATGACACCATT 57.170 25.926 0.00 0.00 44.38 3.16
2310 2420 4.509737 GGCCTCCCGTCGCTGTAC 62.510 72.222 0.00 0.00 0.00 2.90
2311 2421 3.450115 GCCTCCCGTCGCTGTACT 61.450 66.667 0.00 0.00 0.00 2.73
2312 2422 3.003113 GCCTCCCGTCGCTGTACTT 62.003 63.158 0.00 0.00 0.00 2.24
2313 2423 1.139095 CCTCCCGTCGCTGTACTTC 59.861 63.158 0.00 0.00 0.00 3.01
2314 2424 1.313812 CCTCCCGTCGCTGTACTTCT 61.314 60.000 0.00 0.00 0.00 2.85
2315 2425 0.179161 CTCCCGTCGCTGTACTTCTG 60.179 60.000 0.00 0.00 0.00 3.02
2316 2426 1.805945 CCCGTCGCTGTACTTCTGC 60.806 63.158 0.00 0.00 37.59 4.26
2317 2427 1.805945 CCGTCGCTGTACTTCTGCC 60.806 63.158 0.00 0.00 37.66 4.85
2318 2428 1.805945 CGTCGCTGTACTTCTGCCC 60.806 63.158 0.00 0.00 37.66 5.36
2319 2429 1.592223 GTCGCTGTACTTCTGCCCT 59.408 57.895 0.00 0.00 37.66 5.19
2320 2430 0.458716 GTCGCTGTACTTCTGCCCTC 60.459 60.000 0.00 0.00 37.66 4.30
2321 2431 1.153549 CGCTGTACTTCTGCCCTCC 60.154 63.158 0.00 0.00 37.66 4.30
2322 2432 1.888436 CGCTGTACTTCTGCCCTCCA 61.888 60.000 0.00 0.00 37.66 3.86
2323 2433 0.324943 GCTGTACTTCTGCCCTCCAA 59.675 55.000 0.00 0.00 35.43 3.53
2324 2434 1.065126 GCTGTACTTCTGCCCTCCAAT 60.065 52.381 0.00 0.00 35.43 3.16
2325 2435 2.911484 CTGTACTTCTGCCCTCCAATC 58.089 52.381 0.00 0.00 0.00 2.67
2326 2436 1.207089 TGTACTTCTGCCCTCCAATCG 59.793 52.381 0.00 0.00 0.00 3.34
2327 2437 0.830648 TACTTCTGCCCTCCAATCGG 59.169 55.000 0.00 0.00 0.00 4.18
2328 2438 1.821332 CTTCTGCCCTCCAATCGGC 60.821 63.158 0.00 0.00 45.92 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.105128 CCGCCGAGACTCCATGTC 59.895 66.667 0.00 0.00 45.67 3.06
5 6 2.680352 ACCGCCGAGACTCCATGT 60.680 61.111 0.00 0.00 0.00 3.21
6 7 2.202797 CACCGCCGAGACTCCATG 60.203 66.667 0.00 0.00 0.00 3.66
7 8 2.680352 ACACCGCCGAGACTCCAT 60.680 61.111 0.00 0.00 0.00 3.41
8 9 3.680786 CACACCGCCGAGACTCCA 61.681 66.667 0.00 0.00 0.00 3.86
9 10 4.436998 CCACACCGCCGAGACTCC 62.437 72.222 0.00 0.00 0.00 3.85
29 30 2.423446 GTCATAGAGGCCCTGCGG 59.577 66.667 0.00 0.00 0.00 5.69
30 31 2.028190 CGTCATAGAGGCCCTGCG 59.972 66.667 0.00 0.00 0.00 5.18
31 32 1.476007 ATCCGTCATAGAGGCCCTGC 61.476 60.000 0.00 0.00 0.00 4.85
32 33 0.319728 CATCCGTCATAGAGGCCCTG 59.680 60.000 0.00 0.00 0.00 4.45
33 34 1.476007 GCATCCGTCATAGAGGCCCT 61.476 60.000 0.00 0.00 35.07 5.19
34 35 1.004440 GCATCCGTCATAGAGGCCC 60.004 63.158 0.00 0.00 35.07 5.80
35 36 1.373497 CGCATCCGTCATAGAGGCC 60.373 63.158 0.00 0.00 37.76 5.19
36 37 0.941463 CACGCATCCGTCATAGAGGC 60.941 60.000 0.00 0.00 46.39 4.70
37 38 0.668535 TCACGCATCCGTCATAGAGG 59.331 55.000 0.00 0.00 46.39 3.69
38 39 2.030805 TCATCACGCATCCGTCATAGAG 60.031 50.000 0.00 0.00 46.39 2.43
39 40 1.953686 TCATCACGCATCCGTCATAGA 59.046 47.619 0.00 0.00 46.39 1.98
40 41 2.422276 TCATCACGCATCCGTCATAG 57.578 50.000 0.00 0.00 46.39 2.23
41 42 2.610232 CCATCATCACGCATCCGTCATA 60.610 50.000 0.00 0.00 46.39 2.15
42 43 1.505425 CATCATCACGCATCCGTCAT 58.495 50.000 0.00 0.00 46.39 3.06
43 44 0.530431 CCATCATCACGCATCCGTCA 60.530 55.000 0.00 0.00 46.39 4.35
44 45 0.249447 TCCATCATCACGCATCCGTC 60.249 55.000 0.00 0.00 46.39 4.79
46 47 1.551503 CGTCCATCATCACGCATCCG 61.552 60.000 0.00 0.00 41.14 4.18
47 48 2.229039 CGTCCATCATCACGCATCC 58.771 57.895 0.00 0.00 0.00 3.51
52 53 3.976375 CGCGCGTCCATCATCACG 61.976 66.667 24.19 0.00 39.09 4.35
53 54 1.540607 CTACGCGCGTCCATCATCAC 61.541 60.000 41.35 0.00 0.00 3.06
54 55 1.299089 CTACGCGCGTCCATCATCA 60.299 57.895 41.35 18.70 0.00 3.07
55 56 2.016704 CCTACGCGCGTCCATCATC 61.017 63.158 41.35 0.00 0.00 2.92
56 57 2.011741 TTCCTACGCGCGTCCATCAT 62.012 55.000 41.35 16.22 0.00 2.45
57 58 2.607668 CTTCCTACGCGCGTCCATCA 62.608 60.000 41.35 21.22 0.00 3.07
58 59 1.944676 CTTCCTACGCGCGTCCATC 60.945 63.158 41.35 0.00 0.00 3.51
59 60 2.104331 CTTCCTACGCGCGTCCAT 59.896 61.111 41.35 18.40 0.00 3.41
60 61 4.124351 CCTTCCTACGCGCGTCCA 62.124 66.667 41.35 22.93 0.00 4.02
61 62 4.125695 ACCTTCCTACGCGCGTCC 62.126 66.667 41.35 0.00 0.00 4.79
62 63 2.879462 CACCTTCCTACGCGCGTC 60.879 66.667 41.35 0.00 0.00 5.19
63 64 4.430765 CCACCTTCCTACGCGCGT 62.431 66.667 39.05 39.05 0.00 6.01
65 66 4.752879 TGCCACCTTCCTACGCGC 62.753 66.667 5.73 0.00 0.00 6.86
66 67 1.449601 AATGCCACCTTCCTACGCG 60.450 57.895 3.53 3.53 0.00 6.01
67 68 0.676782 ACAATGCCACCTTCCTACGC 60.677 55.000 0.00 0.00 0.00 4.42
68 69 1.066143 AGACAATGCCACCTTCCTACG 60.066 52.381 0.00 0.00 0.00 3.51
69 70 2.359900 CAGACAATGCCACCTTCCTAC 58.640 52.381 0.00 0.00 0.00 3.18
70 71 1.281867 CCAGACAATGCCACCTTCCTA 59.718 52.381 0.00 0.00 0.00 2.94
71 72 0.038744 CCAGACAATGCCACCTTCCT 59.961 55.000 0.00 0.00 0.00 3.36
72 73 0.251341 ACCAGACAATGCCACCTTCC 60.251 55.000 0.00 0.00 0.00 3.46
73 74 0.883833 CACCAGACAATGCCACCTTC 59.116 55.000 0.00 0.00 0.00 3.46
74 75 0.185901 ACACCAGACAATGCCACCTT 59.814 50.000 0.00 0.00 0.00 3.50
75 76 0.185901 AACACCAGACAATGCCACCT 59.814 50.000 0.00 0.00 0.00 4.00
76 77 0.314935 CAACACCAGACAATGCCACC 59.685 55.000 0.00 0.00 0.00 4.61
77 78 1.032014 ACAACACCAGACAATGCCAC 58.968 50.000 0.00 0.00 0.00 5.01
78 79 1.031235 CACAACACCAGACAATGCCA 58.969 50.000 0.00 0.00 0.00 4.92
79 80 0.314935 CCACAACACCAGACAATGCC 59.685 55.000 0.00 0.00 0.00 4.40
80 81 1.032014 ACCACAACACCAGACAATGC 58.968 50.000 0.00 0.00 0.00 3.56
81 82 1.337703 CCACCACAACACCAGACAATG 59.662 52.381 0.00 0.00 0.00 2.82
82 83 1.691196 CCACCACAACACCAGACAAT 58.309 50.000 0.00 0.00 0.00 2.71
83 84 1.034838 GCCACCACAACACCAGACAA 61.035 55.000 0.00 0.00 0.00 3.18
84 85 1.453015 GCCACCACAACACCAGACA 60.453 57.895 0.00 0.00 0.00 3.41
85 86 2.542907 CGCCACCACAACACCAGAC 61.543 63.158 0.00 0.00 0.00 3.51
86 87 2.203139 CGCCACCACAACACCAGA 60.203 61.111 0.00 0.00 0.00 3.86
87 88 2.515991 ACGCCACCACAACACCAG 60.516 61.111 0.00 0.00 0.00 4.00
88 89 2.515057 GACGCCACCACAACACCA 60.515 61.111 0.00 0.00 0.00 4.17
89 90 3.645975 CGACGCCACCACAACACC 61.646 66.667 0.00 0.00 0.00 4.16
90 91 2.586635 TCGACGCCACCACAACAC 60.587 61.111 0.00 0.00 0.00 3.32
91 92 2.586635 GTCGACGCCACCACAACA 60.587 61.111 0.00 0.00 0.00 3.33
92 93 2.174969 TTGTCGACGCCACCACAAC 61.175 57.895 11.62 0.00 0.00 3.32
93 94 2.174969 GTTGTCGACGCCACCACAA 61.175 57.895 11.62 0.00 0.00 3.33
94 95 2.586635 GTTGTCGACGCCACCACA 60.587 61.111 11.62 0.00 0.00 4.17
95 96 2.586635 TGTTGTCGACGCCACCAC 60.587 61.111 11.62 1.35 0.00 4.16
96 97 2.279851 CTGTTGTCGACGCCACCA 60.280 61.111 11.62 1.95 0.00 4.17
109 110 2.116125 GACCTTGCCAGGCCTGTT 59.884 61.111 30.63 7.90 45.56 3.16
110 111 4.335647 CGACCTTGCCAGGCCTGT 62.336 66.667 30.63 11.78 45.56 4.00
136 137 2.546795 CCGATCCATCTTCAGCAGGTAC 60.547 54.545 0.00 0.00 0.00 3.34
205 209 2.338620 CGGTCCAACGCACTCTCA 59.661 61.111 0.00 0.00 0.00 3.27
230 234 2.892425 CAATCGCCGGGTCTGAGC 60.892 66.667 2.18 0.00 0.00 4.26
240 244 3.747976 AACCAAGCCGCAATCGCC 61.748 61.111 0.00 0.00 33.11 5.54
242 246 1.135315 CTCAACCAAGCCGCAATCG 59.865 57.895 0.00 0.00 0.00 3.34
263 267 1.734163 CCCAACATCTAACACCGGAC 58.266 55.000 9.46 0.00 0.00 4.79
265 269 0.035439 AGCCCAACATCTAACACCGG 60.035 55.000 0.00 0.00 0.00 5.28
270 274 2.890945 ACACCAAAGCCCAACATCTAAC 59.109 45.455 0.00 0.00 0.00 2.34
289 293 2.993008 GCCTGCCCAGATCTCACA 59.007 61.111 0.00 0.00 0.00 3.58
313 317 2.625823 CGAAGGGGTGCGCATTGTT 61.626 57.895 15.91 5.02 0.00 2.83
319 323 3.423154 CTTGACGAAGGGGTGCGC 61.423 66.667 0.00 0.00 0.00 6.09
320 324 1.597027 AACTTGACGAAGGGGTGCG 60.597 57.895 0.00 0.00 32.95 5.34
325 329 3.195825 ACTCCTATCAACTTGACGAAGGG 59.804 47.826 13.18 8.75 32.95 3.95
331 335 4.096682 AGTCGCTACTCCTATCAACTTGAC 59.903 45.833 0.00 0.00 0.00 3.18
340 344 3.243569 GCAACATCAGTCGCTACTCCTAT 60.244 47.826 0.00 0.00 31.97 2.57
344 348 1.281899 GGCAACATCAGTCGCTACTC 58.718 55.000 0.00 0.00 31.97 2.59
390 394 7.941431 TCACCAAGACCTTACAAAGTAAAAA 57.059 32.000 0.00 0.00 0.00 1.94
392 396 9.629878 TTATTCACCAAGACCTTACAAAGTAAA 57.370 29.630 0.00 0.00 0.00 2.01
623 643 9.357158 CTGTTTCTCAGTTTGCTTAGACAGCTC 62.357 44.444 0.00 0.00 42.91 4.09
666 687 4.573900 CTCATGTTGCTGACCTAGTTTCT 58.426 43.478 0.00 0.00 0.00 2.52
913 987 6.762187 TCGACGCAATTTTTAATACCTGGATA 59.238 34.615 0.00 0.00 0.00 2.59
920 994 6.547493 TTGCATCGACGCAATTTTTAATAC 57.453 33.333 15.87 0.00 46.61 1.89
959 1033 1.064389 AGTCCTTTATGCTTGAGGGCC 60.064 52.381 0.00 0.00 35.78 5.80
966 1041 4.851639 ATGTCCTGAGTCCTTTATGCTT 57.148 40.909 0.00 0.00 0.00 3.91
995 1070 0.523072 CTGTTTGGTTCGGATGGCAG 59.477 55.000 0.00 0.00 0.00 4.85
1004 1098 2.869233 TTGCTTCTGCTGTTTGGTTC 57.131 45.000 0.00 0.00 40.48 3.62
1015 1112 3.188873 CAGCTCTTCTCCTTTTGCTTCTG 59.811 47.826 0.00 0.00 0.00 3.02
1016 1113 3.072184 TCAGCTCTTCTCCTTTTGCTTCT 59.928 43.478 0.00 0.00 0.00 2.85
1017 1114 3.406764 TCAGCTCTTCTCCTTTTGCTTC 58.593 45.455 0.00 0.00 0.00 3.86
1027 1124 4.501400 GGCTCTAGGATTTCAGCTCTTCTC 60.501 50.000 0.00 0.00 32.14 2.87
1311 1408 3.264104 TCGGTTTATTTACAGCCGGAAG 58.736 45.455 5.05 0.00 42.35 3.46
1441 1541 7.676683 TTTGTAGGAAGCCAGAGTAGATTAT 57.323 36.000 0.00 0.00 0.00 1.28
1442 1542 7.180408 ACTTTTGTAGGAAGCCAGAGTAGATTA 59.820 37.037 0.00 0.00 0.00 1.75
1602 1710 9.289782 GGCTAATGATATGTCTACTTTTTCCAT 57.710 33.333 0.00 0.00 0.00 3.41
1651 1759 1.333177 ATACTCTCATGTCCTCGGGC 58.667 55.000 0.00 0.00 0.00 6.13
1681 1791 3.842869 GCCGGATATAGAGGCTTGG 57.157 57.895 5.05 0.00 46.83 3.61
1686 1796 3.771577 AAACCTTGCCGGATATAGAGG 57.228 47.619 5.05 4.59 36.31 3.69
1687 1797 4.261197 GCAAAAACCTTGCCGGATATAGAG 60.261 45.833 5.05 0.00 39.38 2.43
1688 1798 3.630312 GCAAAAACCTTGCCGGATATAGA 59.370 43.478 5.05 0.00 39.38 1.98
1689 1799 3.964909 GCAAAAACCTTGCCGGATATAG 58.035 45.455 5.05 0.00 39.38 1.31
1691 1801 2.959507 GCAAAAACCTTGCCGGATAT 57.040 45.000 5.05 0.00 39.38 1.63
1698 1808 5.729510 TGAATAATAGGGCAAAAACCTTGC 58.270 37.500 0.78 0.78 44.22 4.01
1699 1809 6.986231 GGATGAATAATAGGGCAAAAACCTTG 59.014 38.462 0.00 0.00 39.54 3.61
1700 1810 6.671779 TGGATGAATAATAGGGCAAAAACCTT 59.328 34.615 0.00 0.00 39.54 3.50
1701 1811 6.098266 GTGGATGAATAATAGGGCAAAAACCT 59.902 38.462 0.00 0.00 42.15 3.50
1702 1812 6.098266 AGTGGATGAATAATAGGGCAAAAACC 59.902 38.462 0.00 0.00 0.00 3.27
1703 1813 7.112452 AGTGGATGAATAATAGGGCAAAAAC 57.888 36.000 0.00 0.00 0.00 2.43
1704 1814 7.364585 CCAAGTGGATGAATAATAGGGCAAAAA 60.365 37.037 0.00 0.00 37.39 1.94
1705 1815 6.098124 CCAAGTGGATGAATAATAGGGCAAAA 59.902 38.462 0.00 0.00 37.39 2.44
1706 1816 5.598005 CCAAGTGGATGAATAATAGGGCAAA 59.402 40.000 0.00 0.00 37.39 3.68
1707 1817 5.103728 TCCAAGTGGATGAATAATAGGGCAA 60.104 40.000 0.00 0.00 39.78 4.52
1708 1818 4.415179 TCCAAGTGGATGAATAATAGGGCA 59.585 41.667 0.00 0.00 39.78 5.36
1709 1819 4.985538 TCCAAGTGGATGAATAATAGGGC 58.014 43.478 0.00 0.00 39.78 5.19
1723 1833 3.230134 TGGGTCTTTTTCATCCAAGTGG 58.770 45.455 0.00 0.00 0.00 4.00
1724 1834 4.322198 CCATGGGTCTTTTTCATCCAAGTG 60.322 45.833 2.85 0.00 0.00 3.16
1725 1835 3.834231 CCATGGGTCTTTTTCATCCAAGT 59.166 43.478 2.85 0.00 0.00 3.16
1726 1836 3.834231 ACCATGGGTCTTTTTCATCCAAG 59.166 43.478 18.09 0.00 0.00 3.61
1727 1837 3.577848 CACCATGGGTCTTTTTCATCCAA 59.422 43.478 18.09 0.00 31.02 3.53
1728 1838 3.164268 CACCATGGGTCTTTTTCATCCA 58.836 45.455 18.09 0.00 31.02 3.41
1729 1839 3.430453 TCACCATGGGTCTTTTTCATCC 58.570 45.455 18.09 0.00 31.02 3.51
1730 1840 5.665916 ATTCACCATGGGTCTTTTTCATC 57.334 39.130 18.09 0.00 31.02 2.92
1731 1841 6.438186 AAATTCACCATGGGTCTTTTTCAT 57.562 33.333 18.09 0.00 31.02 2.57
1732 1842 5.885449 AAATTCACCATGGGTCTTTTTCA 57.115 34.783 18.09 0.00 31.02 2.69
1733 1843 5.469760 CCAAAATTCACCATGGGTCTTTTTC 59.530 40.000 18.09 0.00 31.02 2.29
1734 1844 5.375773 CCAAAATTCACCATGGGTCTTTTT 58.624 37.500 18.09 13.22 31.02 1.94
1735 1845 4.202451 CCCAAAATTCACCATGGGTCTTTT 60.202 41.667 18.09 12.72 46.13 2.27
1736 1846 3.327464 CCCAAAATTCACCATGGGTCTTT 59.673 43.478 18.09 7.31 46.13 2.52
1737 1847 2.905736 CCCAAAATTCACCATGGGTCTT 59.094 45.455 18.09 0.82 46.13 3.01
1738 1848 2.539302 CCCAAAATTCACCATGGGTCT 58.461 47.619 18.09 0.00 46.13 3.85
1742 1852 2.616001 CCAAGCCCAAAATTCACCATGG 60.616 50.000 11.19 11.19 0.00 3.66
1743 1853 2.702261 CCAAGCCCAAAATTCACCATG 58.298 47.619 0.00 0.00 0.00 3.66
1744 1854 1.003464 GCCAAGCCCAAAATTCACCAT 59.997 47.619 0.00 0.00 0.00 3.55
1745 1855 0.396060 GCCAAGCCCAAAATTCACCA 59.604 50.000 0.00 0.00 0.00 4.17
1746 1856 0.396060 TGCCAAGCCCAAAATTCACC 59.604 50.000 0.00 0.00 0.00 4.02
1747 1857 1.511850 GTGCCAAGCCCAAAATTCAC 58.488 50.000 0.00 0.00 0.00 3.18
1748 1858 0.033228 CGTGCCAAGCCCAAAATTCA 59.967 50.000 0.00 0.00 0.00 2.57
1749 1859 0.033366 ACGTGCCAAGCCCAAAATTC 59.967 50.000 0.00 0.00 0.00 2.17
1750 1860 0.249826 CACGTGCCAAGCCCAAAATT 60.250 50.000 0.82 0.00 0.00 1.82
1751 1861 1.367102 CACGTGCCAAGCCCAAAAT 59.633 52.632 0.82 0.00 0.00 1.82
1752 1862 2.811101 CACGTGCCAAGCCCAAAA 59.189 55.556 0.82 0.00 0.00 2.44
1753 1863 3.910490 GCACGTGCCAAGCCCAAA 61.910 61.111 30.12 0.00 34.31 3.28
1784 1894 0.736325 CTCGTTTCTACACCGCCAGG 60.736 60.000 0.00 0.00 45.13 4.45
1785 1895 0.038526 ACTCGTTTCTACACCGCCAG 60.039 55.000 0.00 0.00 0.00 4.85
1786 1896 0.319211 CACTCGTTTCTACACCGCCA 60.319 55.000 0.00 0.00 0.00 5.69
1787 1897 0.038892 TCACTCGTTTCTACACCGCC 60.039 55.000 0.00 0.00 0.00 6.13
1788 1898 1.654105 CATCACTCGTTTCTACACCGC 59.346 52.381 0.00 0.00 0.00 5.68
1789 1899 2.942710 ACATCACTCGTTTCTACACCG 58.057 47.619 0.00 0.00 0.00 4.94
1790 1900 6.097356 TGAATACATCACTCGTTTCTACACC 58.903 40.000 0.00 0.00 31.50 4.16
1791 1901 6.237595 GCTGAATACATCACTCGTTTCTACAC 60.238 42.308 0.00 0.00 33.47 2.90
1792 1902 5.805486 GCTGAATACATCACTCGTTTCTACA 59.195 40.000 0.00 0.00 33.47 2.74
1793 1903 6.037098 AGCTGAATACATCACTCGTTTCTAC 58.963 40.000 0.00 0.00 33.47 2.59
1794 1904 6.208988 AGCTGAATACATCACTCGTTTCTA 57.791 37.500 0.00 0.00 33.47 2.10
1795 1905 5.078411 AGCTGAATACATCACTCGTTTCT 57.922 39.130 0.00 0.00 33.47 2.52
1796 1906 7.470289 AATAGCTGAATACATCACTCGTTTC 57.530 36.000 0.00 0.00 33.47 2.78
1797 1907 7.201644 CCAAATAGCTGAATACATCACTCGTTT 60.202 37.037 0.00 0.00 33.47 3.60
1798 1908 6.258727 CCAAATAGCTGAATACATCACTCGTT 59.741 38.462 0.00 0.00 33.47 3.85
1799 1909 5.755375 CCAAATAGCTGAATACATCACTCGT 59.245 40.000 0.00 0.00 33.47 4.18
1800 1910 5.755375 ACCAAATAGCTGAATACATCACTCG 59.245 40.000 0.00 0.00 33.47 4.18
1801 1911 7.280876 TGAACCAAATAGCTGAATACATCACTC 59.719 37.037 0.00 0.00 33.47 3.51
1802 1912 7.112122 TGAACCAAATAGCTGAATACATCACT 58.888 34.615 0.00 0.00 33.47 3.41
1803 1913 7.320443 TGAACCAAATAGCTGAATACATCAC 57.680 36.000 0.00 0.00 33.47 3.06
1804 1914 7.936496 TTGAACCAAATAGCTGAATACATCA 57.064 32.000 0.00 0.00 36.38 3.07
1805 1915 9.807649 AATTTGAACCAAATAGCTGAATACATC 57.192 29.630 0.00 0.00 42.32 3.06
1807 1917 9.995003 AAAATTTGAACCAAATAGCTGAATACA 57.005 25.926 0.00 0.00 42.32 2.29
1831 1941 0.902531 TGGCCAAACCCGTTCAAAAA 59.097 45.000 0.61 0.00 37.83 1.94
1832 1942 1.123928 ATGGCCAAACCCGTTCAAAA 58.876 45.000 10.96 0.00 37.83 2.44
1833 1943 1.123928 AATGGCCAAACCCGTTCAAA 58.876 45.000 10.96 0.00 37.83 2.69
1834 1944 0.390860 CAATGGCCAAACCCGTTCAA 59.609 50.000 10.96 0.00 37.83 2.69
1835 1945 1.467678 CCAATGGCCAAACCCGTTCA 61.468 55.000 10.96 0.00 37.83 3.18
1836 1946 1.291906 CCAATGGCCAAACCCGTTC 59.708 57.895 10.96 0.00 37.83 3.95
1837 1947 1.051556 AACCAATGGCCAAACCCGTT 61.052 50.000 10.96 5.32 37.83 4.44
1838 1948 1.051556 AAACCAATGGCCAAACCCGT 61.052 50.000 10.96 0.00 37.83 5.28
1839 1949 0.602372 CAAACCAATGGCCAAACCCG 60.602 55.000 10.96 0.00 37.83 5.28
1840 1950 0.250684 CCAAACCAATGGCCAAACCC 60.251 55.000 10.96 0.00 37.83 4.11
1841 1951 0.472044 ACCAAACCAATGGCCAAACC 59.528 50.000 10.96 0.00 44.75 3.27
1842 1952 1.946081 CAACCAAACCAATGGCCAAAC 59.054 47.619 10.96 0.00 44.75 2.93
1843 1953 1.133976 CCAACCAAACCAATGGCCAAA 60.134 47.619 10.96 0.00 44.75 3.28
1844 1954 0.471617 CCAACCAAACCAATGGCCAA 59.528 50.000 10.96 0.00 44.75 4.52
1845 1955 2.140405 CCAACCAAACCAATGGCCA 58.860 52.632 8.56 8.56 44.75 5.36
1848 1958 2.677613 GCTATGCCAACCAAACCAATGG 60.678 50.000 0.00 0.00 46.38 3.16
1849 1959 2.620242 GCTATGCCAACCAAACCAATG 58.380 47.619 0.00 0.00 0.00 2.82
1850 1960 1.204467 CGCTATGCCAACCAAACCAAT 59.796 47.619 0.00 0.00 0.00 3.16
1851 1961 0.600557 CGCTATGCCAACCAAACCAA 59.399 50.000 0.00 0.00 0.00 3.67
1852 1962 0.538516 ACGCTATGCCAACCAAACCA 60.539 50.000 0.00 0.00 0.00 3.67
1853 1963 0.601057 AACGCTATGCCAACCAAACC 59.399 50.000 0.00 0.00 0.00 3.27
1854 1964 2.432206 AAACGCTATGCCAACCAAAC 57.568 45.000 0.00 0.00 0.00 2.93
1855 1965 3.460857 AAAAACGCTATGCCAACCAAA 57.539 38.095 0.00 0.00 0.00 3.28
1872 1982 1.403679 CTGTCCGTTGTCTGCCAAAAA 59.596 47.619 0.00 0.00 34.07 1.94
1873 1983 1.021202 CTGTCCGTTGTCTGCCAAAA 58.979 50.000 0.00 0.00 34.07 2.44
1874 1984 1.444119 GCTGTCCGTTGTCTGCCAAA 61.444 55.000 0.00 0.00 34.07 3.28
1875 1985 1.891919 GCTGTCCGTTGTCTGCCAA 60.892 57.895 0.00 0.00 0.00 4.52
1876 1986 2.280797 GCTGTCCGTTGTCTGCCA 60.281 61.111 0.00 0.00 0.00 4.92
1877 1987 3.414700 CGCTGTCCGTTGTCTGCC 61.415 66.667 0.00 0.00 0.00 4.85
1878 1988 1.738099 ATCGCTGTCCGTTGTCTGC 60.738 57.895 0.00 0.00 38.35 4.26
1879 1989 1.354337 CCATCGCTGTCCGTTGTCTG 61.354 60.000 0.00 0.00 35.43 3.51
1880 1990 1.079819 CCATCGCTGTCCGTTGTCT 60.080 57.895 0.00 0.00 35.43 3.41
1881 1991 2.100631 CCCATCGCTGTCCGTTGTC 61.101 63.158 0.00 0.00 35.43 3.18
1882 1992 2.047274 CCCATCGCTGTCCGTTGT 60.047 61.111 0.00 0.00 35.43 3.32
1883 1993 2.047274 ACCCATCGCTGTCCGTTG 60.047 61.111 0.00 0.00 38.35 4.10
1884 1994 2.047274 CACCCATCGCTGTCCGTT 60.047 61.111 0.00 0.00 38.35 4.44
1885 1995 4.760047 GCACCCATCGCTGTCCGT 62.760 66.667 0.00 0.00 38.35 4.69
1886 1996 4.758251 TGCACCCATCGCTGTCCG 62.758 66.667 0.00 0.00 38.61 4.79
1887 1997 1.750399 ATTGCACCCATCGCTGTCC 60.750 57.895 0.00 0.00 0.00 4.02
1888 1998 1.026182 TCATTGCACCCATCGCTGTC 61.026 55.000 0.00 0.00 0.00 3.51
1889 1999 0.394762 ATCATTGCACCCATCGCTGT 60.395 50.000 0.00 0.00 0.00 4.40
1890 2000 0.030235 CATCATTGCACCCATCGCTG 59.970 55.000 0.00 0.00 0.00 5.18
1891 2001 1.105167 CCATCATTGCACCCATCGCT 61.105 55.000 0.00 0.00 0.00 4.93
1892 2002 1.102809 TCCATCATTGCACCCATCGC 61.103 55.000 0.00 0.00 0.00 4.58
1893 2003 1.268625 CATCCATCATTGCACCCATCG 59.731 52.381 0.00 0.00 0.00 3.84
1894 2004 2.313317 ACATCCATCATTGCACCCATC 58.687 47.619 0.00 0.00 0.00 3.51
1895 2005 2.464796 ACATCCATCATTGCACCCAT 57.535 45.000 0.00 0.00 0.00 4.00
1896 2006 2.234896 AACATCCATCATTGCACCCA 57.765 45.000 0.00 0.00 0.00 4.51
1897 2007 3.181476 GGTAAACATCCATCATTGCACCC 60.181 47.826 0.00 0.00 0.00 4.61
1898 2008 3.181476 GGGTAAACATCCATCATTGCACC 60.181 47.826 0.00 0.00 0.00 5.01
1899 2009 3.489059 CGGGTAAACATCCATCATTGCAC 60.489 47.826 0.00 0.00 0.00 4.57
1900 2010 2.687425 CGGGTAAACATCCATCATTGCA 59.313 45.455 0.00 0.00 0.00 4.08
1901 2011 2.543653 GCGGGTAAACATCCATCATTGC 60.544 50.000 0.00 0.00 0.00 3.56
1902 2012 2.286950 CGCGGGTAAACATCCATCATTG 60.287 50.000 0.00 0.00 0.00 2.82
1903 2013 1.946768 CGCGGGTAAACATCCATCATT 59.053 47.619 0.00 0.00 0.00 2.57
1904 2014 1.134220 ACGCGGGTAAACATCCATCAT 60.134 47.619 12.47 0.00 0.00 2.45
1905 2015 0.250793 ACGCGGGTAAACATCCATCA 59.749 50.000 12.47 0.00 0.00 3.07
1906 2016 0.655733 CACGCGGGTAAACATCCATC 59.344 55.000 12.47 0.00 0.00 3.51
1907 2017 0.250793 TCACGCGGGTAAACATCCAT 59.749 50.000 8.89 0.00 0.00 3.41
1908 2018 0.035036 TTCACGCGGGTAAACATCCA 59.965 50.000 8.89 0.00 0.00 3.41
1909 2019 0.725117 CTTCACGCGGGTAAACATCC 59.275 55.000 8.89 0.00 0.00 3.51
1910 2020 0.096454 GCTTCACGCGGGTAAACATC 59.904 55.000 8.89 0.00 0.00 3.06
1911 2021 0.604243 TGCTTCACGCGGGTAAACAT 60.604 50.000 8.89 0.00 43.27 2.71
1912 2022 0.814410 TTGCTTCACGCGGGTAAACA 60.814 50.000 8.89 0.00 43.27 2.83
1913 2023 0.308376 TTTGCTTCACGCGGGTAAAC 59.692 50.000 8.89 0.00 43.27 2.01
1914 2024 0.589223 CTTTGCTTCACGCGGGTAAA 59.411 50.000 8.89 7.41 43.27 2.01
1915 2025 1.231958 CCTTTGCTTCACGCGGGTAA 61.232 55.000 8.89 0.00 43.27 2.85
1916 2026 1.669760 CCTTTGCTTCACGCGGGTA 60.670 57.895 8.89 0.00 43.27 3.69
1917 2027 2.978010 CCTTTGCTTCACGCGGGT 60.978 61.111 8.89 0.00 43.27 5.28
1918 2028 4.404654 GCCTTTGCTTCACGCGGG 62.405 66.667 12.47 6.51 43.27 6.13
1919 2029 4.404654 GGCCTTTGCTTCACGCGG 62.405 66.667 12.47 0.00 43.27 6.46
1920 2030 4.404654 GGGCCTTTGCTTCACGCG 62.405 66.667 3.53 3.53 43.27 6.01
1921 2031 4.056125 GGGGCCTTTGCTTCACGC 62.056 66.667 0.84 0.00 37.74 5.34
1922 2032 2.282462 AGGGGCCTTTGCTTCACG 60.282 61.111 0.84 0.00 37.74 4.35
1923 2033 1.979155 GGAGGGGCCTTTGCTTCAC 60.979 63.158 0.84 0.00 37.74 3.18
1924 2034 2.440599 GGAGGGGCCTTTGCTTCA 59.559 61.111 0.84 0.00 37.74 3.02
1925 2035 2.363018 GGGAGGGGCCTTTGCTTC 60.363 66.667 0.84 0.00 37.74 3.86
1926 2036 3.997952 GGGGAGGGGCCTTTGCTT 61.998 66.667 0.84 0.00 37.74 3.91
1929 2039 3.599933 TTGGGGGAGGGGCCTTTG 61.600 66.667 0.84 0.00 36.66 2.77
1930 2040 3.600981 GTTGGGGGAGGGGCCTTT 61.601 66.667 0.84 0.00 36.66 3.11
1934 2044 4.382541 CAAGGTTGGGGGAGGGGC 62.383 72.222 0.00 0.00 0.00 5.80
1935 2045 3.672503 CCAAGGTTGGGGGAGGGG 61.673 72.222 0.27 0.00 44.70 4.79
1944 2054 3.194062 ACGTTTGAATTTGCCAAGGTTG 58.806 40.909 0.00 0.00 0.00 3.77
1945 2055 3.535280 ACGTTTGAATTTGCCAAGGTT 57.465 38.095 0.00 0.00 0.00 3.50
1946 2056 3.634910 ACTACGTTTGAATTTGCCAAGGT 59.365 39.130 0.00 0.00 0.00 3.50
1947 2057 4.237349 ACTACGTTTGAATTTGCCAAGG 57.763 40.909 0.00 0.00 0.00 3.61
1948 2058 5.277825 TGAACTACGTTTGAATTTGCCAAG 58.722 37.500 0.00 0.00 0.00 3.61
1949 2059 5.250235 TGAACTACGTTTGAATTTGCCAA 57.750 34.783 0.00 0.00 0.00 4.52
1950 2060 4.902443 TGAACTACGTTTGAATTTGCCA 57.098 36.364 0.00 0.00 0.00 4.92
1951 2061 5.344933 GGAATGAACTACGTTTGAATTTGCC 59.655 40.000 0.00 0.00 0.00 4.52
1952 2062 5.344933 GGGAATGAACTACGTTTGAATTTGC 59.655 40.000 0.00 0.00 0.00 3.68
1953 2063 5.567534 CGGGAATGAACTACGTTTGAATTTG 59.432 40.000 0.00 0.00 0.00 2.32
1954 2064 5.695818 CGGGAATGAACTACGTTTGAATTT 58.304 37.500 0.00 0.00 0.00 1.82
1955 2065 4.379082 GCGGGAATGAACTACGTTTGAATT 60.379 41.667 0.00 0.00 0.00 2.17
1956 2066 3.126343 GCGGGAATGAACTACGTTTGAAT 59.874 43.478 0.00 0.00 0.00 2.57
1957 2067 2.481185 GCGGGAATGAACTACGTTTGAA 59.519 45.455 0.00 0.00 0.00 2.69
1958 2068 2.070783 GCGGGAATGAACTACGTTTGA 58.929 47.619 0.00 0.00 0.00 2.69
1959 2069 1.201877 CGCGGGAATGAACTACGTTTG 60.202 52.381 0.00 0.00 0.00 2.93
1960 2070 1.073177 CGCGGGAATGAACTACGTTT 58.927 50.000 0.00 0.00 0.00 3.60
1961 2071 1.356527 GCGCGGGAATGAACTACGTT 61.357 55.000 8.83 0.00 0.00 3.99
1962 2072 1.808390 GCGCGGGAATGAACTACGT 60.808 57.895 8.83 0.00 0.00 3.57
1963 2073 2.522638 GGCGCGGGAATGAACTACG 61.523 63.158 8.83 0.00 0.00 3.51
1964 2074 2.178235 GGGCGCGGGAATGAACTAC 61.178 63.158 8.83 0.00 0.00 2.73
1965 2075 2.186602 TTGGGCGCGGGAATGAACTA 62.187 55.000 8.83 0.00 0.00 2.24
1966 2076 3.561120 TTGGGCGCGGGAATGAACT 62.561 57.895 8.83 0.00 0.00 3.01
1967 2077 2.148558 TTTTGGGCGCGGGAATGAAC 62.149 55.000 8.83 0.00 0.00 3.18
1968 2078 1.464376 TTTTTGGGCGCGGGAATGAA 61.464 50.000 8.83 0.00 0.00 2.57
1969 2079 1.254284 ATTTTTGGGCGCGGGAATGA 61.254 50.000 8.83 0.00 0.00 2.57
1970 2080 0.457851 TATTTTTGGGCGCGGGAATG 59.542 50.000 8.83 0.00 0.00 2.67
1971 2081 1.187087 TTATTTTTGGGCGCGGGAAT 58.813 45.000 8.83 0.00 0.00 3.01
1972 2082 0.966920 TTTATTTTTGGGCGCGGGAA 59.033 45.000 8.83 0.00 0.00 3.97
1973 2083 0.244178 GTTTATTTTTGGGCGCGGGA 59.756 50.000 8.83 0.00 0.00 5.14
1974 2084 1.073768 CGTTTATTTTTGGGCGCGGG 61.074 55.000 8.83 0.00 0.00 6.13
1975 2085 1.679187 GCGTTTATTTTTGGGCGCGG 61.679 55.000 8.83 0.00 35.71 6.46
1976 2086 1.679187 GGCGTTTATTTTTGGGCGCG 61.679 55.000 0.00 0.00 44.86 6.86
1977 2087 0.667792 TGGCGTTTATTTTTGGGCGC 60.668 50.000 0.00 0.00 43.46 6.53
1978 2088 1.064582 GTGGCGTTTATTTTTGGGCG 58.935 50.000 0.00 0.00 0.00 6.13
1979 2089 2.156343 TGTGGCGTTTATTTTTGGGC 57.844 45.000 0.00 0.00 0.00 5.36
1980 2090 3.682377 GGATTGTGGCGTTTATTTTTGGG 59.318 43.478 0.00 0.00 0.00 4.12
1981 2091 3.366422 CGGATTGTGGCGTTTATTTTTGG 59.634 43.478 0.00 0.00 0.00 3.28
1982 2092 3.366422 CCGGATTGTGGCGTTTATTTTTG 59.634 43.478 0.00 0.00 0.00 2.44
1983 2093 3.580731 CCGGATTGTGGCGTTTATTTTT 58.419 40.909 0.00 0.00 0.00 1.94
1984 2094 2.672760 GCCGGATTGTGGCGTTTATTTT 60.673 45.455 5.05 0.00 43.70 1.82
1985 2095 1.135228 GCCGGATTGTGGCGTTTATTT 60.135 47.619 5.05 0.00 43.70 1.40
1986 2096 0.454196 GCCGGATTGTGGCGTTTATT 59.546 50.000 5.05 0.00 43.70 1.40
1987 2097 2.103410 GCCGGATTGTGGCGTTTAT 58.897 52.632 5.05 0.00 43.70 1.40
1988 2098 3.580916 GCCGGATTGTGGCGTTTA 58.419 55.556 5.05 0.00 43.70 2.01
1994 2104 2.016961 CTTGATCGCCGGATTGTGG 58.983 57.895 5.05 0.00 31.51 4.17
1995 2105 1.353103 GCTTGATCGCCGGATTGTG 59.647 57.895 5.05 0.00 31.51 3.33
1996 2106 2.173669 CGCTTGATCGCCGGATTGT 61.174 57.895 5.05 0.00 31.51 2.71
1997 2107 2.628106 CGCTTGATCGCCGGATTG 59.372 61.111 5.05 0.00 31.51 2.67
1998 2108 2.588877 CCGCTTGATCGCCGGATT 60.589 61.111 5.05 0.00 44.55 3.01
1999 2109 3.849951 ACCGCTTGATCGCCGGAT 61.850 61.111 20.74 0.00 44.55 4.18
2000 2110 4.812476 CACCGCTTGATCGCCGGA 62.812 66.667 20.74 0.00 44.55 5.14
2001 2111 4.812476 TCACCGCTTGATCGCCGG 62.812 66.667 14.54 14.54 46.97 6.13
2002 2112 2.586079 ATCACCGCTTGATCGCCG 60.586 61.111 0.00 0.00 41.53 6.46
2008 2118 2.954020 GATCGCCGATCACCGCTTGA 62.954 60.000 21.52 0.00 38.77 3.02
2009 2119 2.586079 ATCGCCGATCACCGCTTG 60.586 61.111 0.00 0.00 36.84 4.01
2010 2120 2.279517 GATCGCCGATCACCGCTT 60.280 61.111 21.52 0.00 38.77 4.68
2011 2121 4.630785 CGATCGCCGATCACCGCT 62.631 66.667 25.17 0.00 38.84 5.52
2012 2122 4.624117 TCGATCGCCGATCACCGC 62.624 66.667 25.17 0.28 43.23 5.68
2020 2130 1.658596 TGAACTTTTCATCGATCGCCG 59.341 47.619 11.09 3.55 34.08 6.46
2021 2131 2.537730 GCTGAACTTTTCATCGATCGCC 60.538 50.000 11.09 0.00 39.30 5.54
2022 2132 2.698472 GCTGAACTTTTCATCGATCGC 58.302 47.619 11.09 0.00 39.30 4.58
2028 2138 7.378461 TGATTTTTGTACGCTGAACTTTTCATC 59.622 33.333 0.00 0.00 39.30 2.92
2029 2139 7.199766 TGATTTTTGTACGCTGAACTTTTCAT 58.800 30.769 0.00 0.00 39.30 2.57
2030 2140 6.556212 TGATTTTTGTACGCTGAACTTTTCA 58.444 32.000 0.00 0.00 38.17 2.69
2031 2141 6.910433 TCTGATTTTTGTACGCTGAACTTTTC 59.090 34.615 0.00 0.00 0.00 2.29
2032 2142 6.791303 TCTGATTTTTGTACGCTGAACTTTT 58.209 32.000 0.00 0.00 0.00 2.27
2033 2143 6.371809 TCTGATTTTTGTACGCTGAACTTT 57.628 33.333 0.00 0.00 0.00 2.66
2034 2144 6.183360 TGTTCTGATTTTTGTACGCTGAACTT 60.183 34.615 0.00 0.00 37.89 2.66
2035 2145 5.295787 TGTTCTGATTTTTGTACGCTGAACT 59.704 36.000 0.00 0.00 37.89 3.01
2036 2146 5.507077 TGTTCTGATTTTTGTACGCTGAAC 58.493 37.500 0.00 0.00 37.69 3.18
2037 2147 5.525745 TCTGTTCTGATTTTTGTACGCTGAA 59.474 36.000 0.00 0.00 0.00 3.02
2038 2148 5.053811 TCTGTTCTGATTTTTGTACGCTGA 58.946 37.500 0.00 0.00 0.00 4.26
2039 2149 5.342806 TCTGTTCTGATTTTTGTACGCTG 57.657 39.130 0.00 0.00 0.00 5.18
2040 2150 6.199393 GTTTCTGTTCTGATTTTTGTACGCT 58.801 36.000 0.00 0.00 0.00 5.07
2041 2151 5.113529 CGTTTCTGTTCTGATTTTTGTACGC 59.886 40.000 0.00 0.00 0.00 4.42
2042 2152 5.113529 GCGTTTCTGTTCTGATTTTTGTACG 59.886 40.000 0.00 0.00 0.00 3.67
2043 2153 5.113529 CGCGTTTCTGTTCTGATTTTTGTAC 59.886 40.000 0.00 0.00 0.00 2.90
2044 2154 5.201910 CGCGTTTCTGTTCTGATTTTTGTA 58.798 37.500 0.00 0.00 0.00 2.41
2045 2155 4.035017 CGCGTTTCTGTTCTGATTTTTGT 58.965 39.130 0.00 0.00 0.00 2.83
2046 2156 3.121696 GCGCGTTTCTGTTCTGATTTTTG 60.122 43.478 8.43 0.00 0.00 2.44
2047 2157 3.042887 GCGCGTTTCTGTTCTGATTTTT 58.957 40.909 8.43 0.00 0.00 1.94
2048 2158 2.032799 TGCGCGTTTCTGTTCTGATTTT 59.967 40.909 8.43 0.00 0.00 1.82
2049 2159 1.601903 TGCGCGTTTCTGTTCTGATTT 59.398 42.857 8.43 0.00 0.00 2.17
2050 2160 1.225855 TGCGCGTTTCTGTTCTGATT 58.774 45.000 8.43 0.00 0.00 2.57
2051 2161 1.394917 GATGCGCGTTTCTGTTCTGAT 59.605 47.619 8.43 0.00 0.00 2.90
2052 2162 0.790207 GATGCGCGTTTCTGTTCTGA 59.210 50.000 8.43 0.00 0.00 3.27
2053 2163 0.512518 TGATGCGCGTTTCTGTTCTG 59.487 50.000 8.43 0.00 0.00 3.02
2054 2164 0.792640 CTGATGCGCGTTTCTGTTCT 59.207 50.000 8.43 0.00 0.00 3.01
2055 2165 0.790207 TCTGATGCGCGTTTCTGTTC 59.210 50.000 8.43 0.00 0.00 3.18
2056 2166 0.512952 GTCTGATGCGCGTTTCTGTT 59.487 50.000 8.43 0.00 0.00 3.16
2057 2167 1.617755 CGTCTGATGCGCGTTTCTGT 61.618 55.000 8.43 0.00 0.00 3.41
2058 2168 1.057822 CGTCTGATGCGCGTTTCTG 59.942 57.895 8.43 9.31 0.00 3.02
2059 2169 2.094659 CCGTCTGATGCGCGTTTCT 61.095 57.895 8.43 0.00 0.00 2.52
2060 2170 2.395690 CCGTCTGATGCGCGTTTC 59.604 61.111 8.43 5.67 0.00 2.78
2061 2171 3.788766 GCCGTCTGATGCGCGTTT 61.789 61.111 8.43 0.00 0.00 3.60
2067 2177 2.583593 GACCTCGCCGTCTGATGC 60.584 66.667 0.00 0.00 0.00 3.91
2068 2178 2.278206 CGACCTCGCCGTCTGATG 60.278 66.667 1.10 0.00 0.00 3.07
2069 2179 3.518998 CCGACCTCGCCGTCTGAT 61.519 66.667 0.00 0.00 38.18 2.90
2115 2225 4.452733 GAGACCCCGTCAAGCCCG 62.453 72.222 0.00 0.00 34.60 6.13
2116 2226 3.003763 AGAGACCCCGTCAAGCCC 61.004 66.667 0.00 0.00 34.60 5.19
2117 2227 2.266055 CAGAGACCCCGTCAAGCC 59.734 66.667 0.00 0.00 34.60 4.35
2118 2228 1.374758 CACAGAGACCCCGTCAAGC 60.375 63.158 0.00 0.00 34.60 4.01
2119 2229 1.374758 GCACAGAGACCCCGTCAAG 60.375 63.158 0.00 0.00 34.60 3.02
2120 2230 1.407656 AAGCACAGAGACCCCGTCAA 61.408 55.000 0.00 0.00 34.60 3.18
2121 2231 1.837051 AAGCACAGAGACCCCGTCA 60.837 57.895 0.00 0.00 34.60 4.35
2122 2232 1.374758 CAAGCACAGAGACCCCGTC 60.375 63.158 0.00 0.00 0.00 4.79
2123 2233 2.743718 CAAGCACAGAGACCCCGT 59.256 61.111 0.00 0.00 0.00 5.28
2124 2234 2.046892 CCAAGCACAGAGACCCCG 60.047 66.667 0.00 0.00 0.00 5.73
2125 2235 2.360475 GCCAAGCACAGAGACCCC 60.360 66.667 0.00 0.00 0.00 4.95
2126 2236 2.743928 CGCCAAGCACAGAGACCC 60.744 66.667 0.00 0.00 0.00 4.46
2127 2237 2.743928 CCGCCAAGCACAGAGACC 60.744 66.667 0.00 0.00 0.00 3.85
2128 2238 2.031163 ACCGCCAAGCACAGAGAC 59.969 61.111 0.00 0.00 0.00 3.36
2129 2239 2.031012 CACCGCCAAGCACAGAGA 59.969 61.111 0.00 0.00 0.00 3.10
2130 2240 2.281070 ACACCGCCAAGCACAGAG 60.281 61.111 0.00 0.00 0.00 3.35
2131 2241 2.591429 CACACCGCCAAGCACAGA 60.591 61.111 0.00 0.00 0.00 3.41
2132 2242 3.663176 CCACACCGCCAAGCACAG 61.663 66.667 0.00 0.00 0.00 3.66
2135 2245 4.892965 AAGCCACACCGCCAAGCA 62.893 61.111 0.00 0.00 0.00 3.91
2136 2246 4.043200 GAAGCCACACCGCCAAGC 62.043 66.667 0.00 0.00 0.00 4.01
2137 2247 2.281761 AGAAGCCACACCGCCAAG 60.282 61.111 0.00 0.00 0.00 3.61
2138 2248 2.594303 CAGAAGCCACACCGCCAA 60.594 61.111 0.00 0.00 0.00 4.52
2143 2253 3.730761 CAGCGCAGAAGCCACACC 61.731 66.667 11.47 0.00 37.52 4.16
2144 2254 4.395583 GCAGCGCAGAAGCCACAC 62.396 66.667 11.47 0.00 37.52 3.82
2164 2274 2.699576 TATGATGCCGCCGAGACTGC 62.700 60.000 0.00 0.00 0.00 4.40
2165 2275 0.665670 CTATGATGCCGCCGAGACTG 60.666 60.000 0.00 0.00 0.00 3.51
2166 2276 1.662608 CTATGATGCCGCCGAGACT 59.337 57.895 0.00 0.00 0.00 3.24
2167 2277 1.373497 CCTATGATGCCGCCGAGAC 60.373 63.158 0.00 0.00 0.00 3.36
2168 2278 1.806461 GACCTATGATGCCGCCGAGA 61.806 60.000 0.00 0.00 0.00 4.04
2169 2279 1.373497 GACCTATGATGCCGCCGAG 60.373 63.158 0.00 0.00 0.00 4.63
2170 2280 2.734591 GACCTATGATGCCGCCGA 59.265 61.111 0.00 0.00 0.00 5.54
2171 2281 2.734723 CGACCTATGATGCCGCCG 60.735 66.667 0.00 0.00 0.00 6.46
2172 2282 2.357517 CCGACCTATGATGCCGCC 60.358 66.667 0.00 0.00 0.00 6.13
2173 2283 2.357517 CCCGACCTATGATGCCGC 60.358 66.667 0.00 0.00 0.00 6.53
2174 2284 2.357517 GCCCGACCTATGATGCCG 60.358 66.667 0.00 0.00 0.00 5.69
2175 2285 0.886490 CAAGCCCGACCTATGATGCC 60.886 60.000 0.00 0.00 0.00 4.40
2176 2286 0.179045 ACAAGCCCGACCTATGATGC 60.179 55.000 0.00 0.00 0.00 3.91
2177 2287 1.942657 CAACAAGCCCGACCTATGATG 59.057 52.381 0.00 0.00 0.00 3.07
2178 2288 1.134098 CCAACAAGCCCGACCTATGAT 60.134 52.381 0.00 0.00 0.00 2.45
2179 2289 0.251916 CCAACAAGCCCGACCTATGA 59.748 55.000 0.00 0.00 0.00 2.15
2180 2290 1.376609 GCCAACAAGCCCGACCTATG 61.377 60.000 0.00 0.00 0.00 2.23
2181 2291 1.077716 GCCAACAAGCCCGACCTAT 60.078 57.895 0.00 0.00 0.00 2.57
2182 2292 2.349755 GCCAACAAGCCCGACCTA 59.650 61.111 0.00 0.00 0.00 3.08
2212 2322 2.298158 ATAGAAGCACTCCCCACGCG 62.298 60.000 3.53 3.53 0.00 6.01
2213 2323 0.107654 AATAGAAGCACTCCCCACGC 60.108 55.000 0.00 0.00 0.00 5.34
2214 2324 1.207089 TCAATAGAAGCACTCCCCACG 59.793 52.381 0.00 0.00 0.00 4.94
2215 2325 3.350219 TTCAATAGAAGCACTCCCCAC 57.650 47.619 0.00 0.00 0.00 4.61
2216 2326 4.079253 GTTTTCAATAGAAGCACTCCCCA 58.921 43.478 0.00 0.00 34.71 4.96
2217 2327 4.079253 TGTTTTCAATAGAAGCACTCCCC 58.921 43.478 0.00 0.00 34.71 4.81
2218 2328 5.705609 TTGTTTTCAATAGAAGCACTCCC 57.294 39.130 0.00 0.00 34.71 4.30
2219 2329 7.867403 TCATTTTGTTTTCAATAGAAGCACTCC 59.133 33.333 0.00 0.00 39.70 3.85
2220 2330 8.694394 GTCATTTTGTTTTCAATAGAAGCACTC 58.306 33.333 0.00 0.00 39.70 3.51
2221 2331 8.196771 TGTCATTTTGTTTTCAATAGAAGCACT 58.803 29.630 0.00 0.00 39.70 4.40
2222 2332 8.268738 GTGTCATTTTGTTTTCAATAGAAGCAC 58.731 33.333 0.00 0.00 39.70 4.40
2223 2333 7.437862 GGTGTCATTTTGTTTTCAATAGAAGCA 59.562 33.333 0.00 0.00 39.70 3.91
2224 2334 7.437862 TGGTGTCATTTTGTTTTCAATAGAAGC 59.562 33.333 0.00 0.00 39.70 3.86
2225 2335 8.870160 TGGTGTCATTTTGTTTTCAATAGAAG 57.130 30.769 0.00 0.00 39.70 2.85
2226 2336 9.829507 AATGGTGTCATTTTGTTTTCAATAGAA 57.170 25.926 0.00 0.00 40.42 2.10
2293 2403 4.509737 GTACAGCGACGGGAGGCC 62.510 72.222 0.00 0.00 0.00 5.19
2294 2404 2.885774 GAAGTACAGCGACGGGAGGC 62.886 65.000 0.00 0.00 0.00 4.70
2295 2405 1.139095 GAAGTACAGCGACGGGAGG 59.861 63.158 0.00 0.00 0.00 4.30
2296 2406 0.179161 CAGAAGTACAGCGACGGGAG 60.179 60.000 0.00 0.00 0.00 4.30
2297 2407 1.880894 CAGAAGTACAGCGACGGGA 59.119 57.895 0.00 0.00 0.00 5.14
2298 2408 1.805945 GCAGAAGTACAGCGACGGG 60.806 63.158 0.00 0.00 0.00 5.28
2299 2409 1.805945 GGCAGAAGTACAGCGACGG 60.806 63.158 0.00 0.00 31.65 4.79
2300 2410 1.805945 GGGCAGAAGTACAGCGACG 60.806 63.158 0.00 0.00 31.65 5.12
2301 2411 0.458716 GAGGGCAGAAGTACAGCGAC 60.459 60.000 0.00 0.00 31.65 5.19
2302 2412 1.605058 GGAGGGCAGAAGTACAGCGA 61.605 60.000 0.00 0.00 31.65 4.93
2303 2413 1.153549 GGAGGGCAGAAGTACAGCG 60.154 63.158 0.00 0.00 31.65 5.18
2304 2414 0.324943 TTGGAGGGCAGAAGTACAGC 59.675 55.000 0.00 0.00 0.00 4.40
2305 2415 2.739932 CGATTGGAGGGCAGAAGTACAG 60.740 54.545 0.00 0.00 0.00 2.74
2306 2416 1.207089 CGATTGGAGGGCAGAAGTACA 59.793 52.381 0.00 0.00 0.00 2.90
2307 2417 1.473434 CCGATTGGAGGGCAGAAGTAC 60.473 57.143 0.00 0.00 37.49 2.73
2308 2418 0.830648 CCGATTGGAGGGCAGAAGTA 59.169 55.000 0.00 0.00 37.49 2.24
2309 2419 1.604378 CCGATTGGAGGGCAGAAGT 59.396 57.895 0.00 0.00 37.49 3.01
2310 2420 4.547859 CCGATTGGAGGGCAGAAG 57.452 61.111 0.00 0.00 37.49 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.