Multiple sequence alignment - TraesCS1D01G428400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G428400 chr1D 100.000 4751 0 0 1 4751 480573975 480578725 0.000000e+00 8774.0
1 TraesCS1D01G428400 chr1A 96.209 3456 81 24 849 4289 576893737 576897157 0.000000e+00 5611.0
2 TraesCS1D01G428400 chr1A 91.737 835 46 10 1 816 576892828 576893658 0.000000e+00 1138.0
3 TraesCS1D01G428400 chr1B 96.996 2230 62 3 849 3075 668936223 668938450 0.000000e+00 3742.0
4 TraesCS1D01G428400 chr1B 91.415 827 53 9 1 816 668935325 668936144 0.000000e+00 1118.0
5 TraesCS1D01G428400 chr1B 89.855 552 19 21 3654 4178 668939435 668939976 0.000000e+00 675.0
6 TraesCS1D01G428400 chr1B 89.896 386 12 12 3812 4178 668944665 668945042 5.570000e-129 472.0
7 TraesCS1D01G428400 chr1B 87.391 230 20 8 3074 3298 668938572 668938797 6.100000e-64 255.0
8 TraesCS1D01G428400 chr1B 95.000 80 4 0 4420 4499 668939988 668940067 4.990000e-25 126.0
9 TraesCS1D01G428400 chr1B 90.722 97 6 2 4420 4515 668972423 668972517 4.990000e-25 126.0
10 TraesCS1D01G428400 chr5D 82.759 493 40 15 982 1474 484659130 484659577 9.580000e-107 398.0
11 TraesCS1D01G428400 chr5D 86.427 361 29 4 982 1338 484699655 484699999 1.250000e-100 377.0
12 TraesCS1D01G428400 chr5B 83.333 282 23 9 1104 1381 596081870 596082131 6.140000e-59 239.0
13 TraesCS1D01G428400 chr5B 86.905 84 7 1 1104 1183 596670600 596670517 1.820000e-14 91.6
14 TraesCS1D01G428400 chr6B 95.050 101 5 0 4651 4751 51964571 51964671 4.920000e-35 159.0
15 TraesCS1D01G428400 chr6B 94.898 98 5 0 4654 4751 52114245 52114148 2.290000e-33 154.0
16 TraesCS1D01G428400 chr6B 93.939 99 5 1 4651 4749 52019163 52019260 1.070000e-31 148.0
17 TraesCS1D01G428400 chr6B 92.079 101 8 0 4651 4751 52059730 52059830 4.960000e-30 143.0
18 TraesCS1D01G428400 chr6B 92.857 98 7 0 4654 4751 52152275 52152178 4.960000e-30 143.0
19 TraesCS1D01G428400 chr6D 92.079 101 8 0 4651 4751 28162441 28162541 4.960000e-30 143.0
20 TraesCS1D01G428400 chr6D 91.089 101 9 0 4651 4751 28028298 28028398 2.310000e-28 137.0
21 TraesCS1D01G428400 chr6A 92.079 101 8 0 4651 4751 29692750 29692850 4.960000e-30 143.0
22 TraesCS1D01G428400 chrUn 91.837 98 8 0 4654 4751 71734570 71734473 2.310000e-28 137.0
23 TraesCS1D01G428400 chr7D 92.857 84 6 0 203 286 445902637 445902554 6.460000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G428400 chr1D 480573975 480578725 4750 False 8774.0 8774 100.0000 1 4751 1 chr1D.!!$F1 4750
1 TraesCS1D01G428400 chr1A 576892828 576897157 4329 False 3374.5 5611 93.9730 1 4289 2 chr1A.!!$F1 4288
2 TraesCS1D01G428400 chr1B 668935325 668940067 4742 False 1183.2 3742 92.1314 1 4499 5 chr1B.!!$F3 4498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
263 269 0.387750 GCTGCTGCCTAACAAAGCAC 60.388 55.0 3.85 0.00 41.83 4.40 F
506 522 0.527817 GCCTTCCAGATACGACCACG 60.528 60.0 0.00 0.00 45.75 4.94 F
817 837 0.809385 CAAATACTGCTGCTGCTGCT 59.191 50.0 27.67 14.24 41.07 4.24 F
2569 2649 0.382515 TTTGAAGGCCACGAAAACCG 59.617 50.0 5.01 0.00 45.44 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1596 1676 0.547471 TCCTCATGAAGGCTGGTCCA 60.547 55.000 0.0 0.0 45.78 4.02 R
2110 2190 1.060163 ACTACCTGGCCCACAAGTGT 61.060 55.000 0.0 0.0 0.00 3.55 R
2682 2762 1.673665 GCCAGCTCCCACAGTTGAG 60.674 63.158 0.0 0.0 35.34 3.02 R
4564 5094 0.097674 GCAAGAGCAACGCCACATAG 59.902 55.000 0.0 0.0 41.58 2.23 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 147 3.866327 GCTCGGTTGTCCTAGAATTTCTC 59.134 47.826 1.27 0.00 0.00 2.87
263 269 0.387750 GCTGCTGCCTAACAAAGCAC 60.388 55.000 3.85 0.00 41.83 4.40
279 285 1.866853 GCACTAGCTTTGCCACCACC 61.867 60.000 8.49 0.00 37.91 4.61
283 289 2.046009 TAGCTTTGCCACCACCGACA 62.046 55.000 0.00 0.00 0.00 4.35
286 292 3.705934 TTTGCCACCACCGACAGCA 62.706 57.895 0.00 0.00 0.00 4.41
287 293 3.705934 TTGCCACCACCGACAGCAA 62.706 57.895 0.00 0.00 40.89 3.91
288 294 3.357079 GCCACCACCGACAGCAAG 61.357 66.667 0.00 0.00 0.00 4.01
289 295 2.111043 CCACCACCGACAGCAAGT 59.889 61.111 0.00 0.00 0.00 3.16
298 314 0.878523 CGACAGCAAGTTTCCGGTGA 60.879 55.000 0.00 0.00 34.74 4.02
320 336 3.375782 GCCACAGCTGAAAAATCACTT 57.624 42.857 23.35 0.00 35.50 3.16
321 337 3.721035 GCCACAGCTGAAAAATCACTTT 58.279 40.909 23.35 0.00 35.50 2.66
322 338 4.122046 GCCACAGCTGAAAAATCACTTTT 58.878 39.130 23.35 0.00 36.57 2.27
323 339 4.571984 GCCACAGCTGAAAAATCACTTTTT 59.428 37.500 23.35 0.00 40.34 1.94
439 455 3.740128 AAGGGCGGCGCTATGAGTG 62.740 63.158 32.30 0.00 0.00 3.51
441 457 2.511600 GGCGGCGCTATGAGTGTT 60.512 61.111 32.30 0.00 0.00 3.32
506 522 0.527817 GCCTTCCAGATACGACCACG 60.528 60.000 0.00 0.00 45.75 4.94
816 836 3.324170 CAAATACTGCTGCTGCTGC 57.676 52.632 22.51 22.51 41.07 5.25
817 837 0.809385 CAAATACTGCTGCTGCTGCT 59.191 50.000 27.67 14.24 41.07 4.24
818 838 0.809385 AAATACTGCTGCTGCTGCTG 59.191 50.000 27.75 27.75 41.07 4.41
834 854 1.134310 TGCTGCTGCTGCTGTATATGT 60.134 47.619 27.67 0.00 39.81 2.29
864 942 5.330233 TGTCAACTATTCACTGTCTCCCTA 58.670 41.667 0.00 0.00 0.00 3.53
923 1003 8.271157 AAATACTTGATTTCTGCAGGAGTGCG 62.271 42.308 15.13 0.17 42.45 5.34
969 1049 3.765381 TGTTTGCATCTGGATTGAGGAA 58.235 40.909 0.00 0.00 0.00 3.36
1037 1117 6.948886 AGGACTTGTCTTCTGATCACTTACTA 59.051 38.462 0.00 0.00 0.00 1.82
1041 1121 7.617723 ACTTGTCTTCTGATCACTTACTATCCT 59.382 37.037 0.00 0.00 0.00 3.24
1507 1587 2.103263 GCTTACGAGGTCCTCATGGATT 59.897 50.000 19.15 0.00 45.29 3.01
1596 1676 4.515567 CCGCAAGACTTCTTTAAGGTCTTT 59.484 41.667 11.91 0.00 43.02 2.52
1974 2054 1.274712 AGAAACTGCAGGAGGAGGAG 58.725 55.000 19.93 0.00 37.55 3.69
2110 2190 0.955428 AGAGAAAAATCGCCTGCGCA 60.955 50.000 10.98 10.98 39.59 6.09
2147 2227 1.843851 AGTTGGTGAGTCCCACTTCAA 59.156 47.619 0.26 0.00 45.03 2.69
2410 2490 4.754618 CACAAGTCATTACACTAGGCAACA 59.245 41.667 0.00 0.00 41.41 3.33
2512 2592 3.721087 ACAAGAGGTGGGAGGTTATTG 57.279 47.619 0.00 0.00 0.00 1.90
2540 2620 7.620094 AGAGTTTATTGGTACTGGTAGATCTGT 59.380 37.037 5.18 0.00 0.00 3.41
2569 2649 0.382515 TTTGAAGGCCACGAAAACCG 59.617 50.000 5.01 0.00 45.44 4.44
2593 2673 1.346062 TCTGCAGAAGCCAGACTCTT 58.654 50.000 15.67 0.00 41.13 2.85
2605 2685 6.115448 AGCCAGACTCTTCTAAAGCTTTTA 57.885 37.500 18.47 3.26 31.16 1.52
2682 2762 2.512515 GATGAGACGGCTGGTGGC 60.513 66.667 0.00 0.00 40.90 5.01
2695 2775 1.302832 GGTGGCTCAACTGTGGGAG 60.303 63.158 5.61 5.61 0.00 4.30
2703 2783 3.497884 AACTGTGGGAGCTGGCACC 62.498 63.158 0.00 0.45 0.00 5.01
2718 2798 2.046285 CACCGAACCATCCAAGGCC 61.046 63.158 0.00 0.00 0.00 5.19
2751 2831 2.346739 GCCAGCAGCAGTCAGACT 59.653 61.111 0.00 0.00 42.97 3.24
2783 2863 1.222936 CTGGTGCTGATCCTGTCCC 59.777 63.158 0.00 0.00 0.00 4.46
2784 2864 1.229625 TGGTGCTGATCCTGTCCCT 60.230 57.895 0.00 0.00 0.00 4.20
2817 2897 1.558294 TCTGCAACAGATCCAGATGCT 59.442 47.619 15.66 0.00 35.39 3.79
2868 2948 1.066908 CAAGCTTTGAAGGCGTTTCCA 59.933 47.619 0.00 0.00 37.29 3.53
2947 3027 3.181480 GGTGCAGTGCAAGAAAAAGGTTA 60.181 43.478 21.67 0.00 41.47 2.85
2949 3029 3.181480 TGCAGTGCAAGAAAAAGGTTACC 60.181 43.478 17.26 0.00 34.76 2.85
3126 3336 3.104512 ACATTTCTCCCATGTCGTCCTA 58.895 45.455 0.00 0.00 27.99 2.94
3135 3345 6.069615 TCTCCCATGTCGTCCTATATCTGATA 60.070 42.308 0.00 0.00 0.00 2.15
3246 3457 5.646360 GGTGTGCTGTAGTTATTTGTACCAT 59.354 40.000 0.00 0.00 0.00 3.55
3455 3710 3.304324 GCTGGCTTGTCTTTGTTTCTCTC 60.304 47.826 0.00 0.00 0.00 3.20
3489 3912 7.750947 ATAGTAGGTCTGGTTCTGGTAAAAT 57.249 36.000 0.00 0.00 0.00 1.82
3602 4040 8.894768 ACTAACTAGTCATGATCTTAATTGGC 57.105 34.615 0.00 0.00 0.00 4.52
3603 4041 7.934120 ACTAACTAGTCATGATCTTAATTGGCC 59.066 37.037 0.00 0.00 0.00 5.36
3640 4079 8.204836 AGTTGGAGTATTATTATCACACAGGTC 58.795 37.037 0.00 0.00 0.00 3.85
3678 4182 7.147444 TGTTGGATACCCTTTACCCAGTTATAG 60.147 40.741 0.00 0.00 0.00 1.31
3682 4186 9.109246 GGATACCCTTTACCCAGTTATAGTATT 57.891 37.037 0.00 0.00 0.00 1.89
3688 4192 8.621286 CCTTTACCCAGTTATAGTATTTTGCTG 58.379 37.037 0.00 0.00 0.00 4.41
3707 4211 1.312815 GAACCTTGTCTGCTGTGCTT 58.687 50.000 0.00 0.00 0.00 3.91
3789 4293 1.093159 CTGCTGACTTTCTGGATGGC 58.907 55.000 0.00 0.00 0.00 4.40
4040 4564 3.776795 GCTGACGTTATTCTTGTTACGCG 60.777 47.826 3.53 3.53 37.51 6.01
4041 4565 2.090967 TGACGTTATTCTTGTTACGCGC 59.909 45.455 5.73 0.00 37.51 6.86
4042 4566 2.331194 ACGTTATTCTTGTTACGCGCT 58.669 42.857 5.73 0.00 37.51 5.92
4043 4567 3.500982 ACGTTATTCTTGTTACGCGCTA 58.499 40.909 5.73 0.00 37.51 4.26
4107 4635 4.751060 TGAGTATCGGTTTCGCTATGTTT 58.249 39.130 0.00 0.00 38.61 2.83
4108 4636 4.565166 TGAGTATCGGTTTCGCTATGTTTG 59.435 41.667 0.00 0.00 38.61 2.93
4109 4637 4.501071 AGTATCGGTTTCGCTATGTTTGT 58.499 39.130 0.00 0.00 36.13 2.83
4132 4662 3.072211 TCTCTTGATGTCTTGCTGCTTG 58.928 45.455 0.00 0.00 0.00 4.01
4155 4685 6.800543 TGTAGCTCATCATCTTAGTCTTGTC 58.199 40.000 0.00 0.00 0.00 3.18
4233 4763 1.980772 GCAAAGGGCTGGCTGTCAT 60.981 57.895 0.00 0.00 40.25 3.06
4236 4766 1.679680 CAAAGGGCTGGCTGTCATATG 59.320 52.381 0.00 0.00 0.00 1.78
4247 4777 3.264947 GCTGTCATATGTTGTGCTCAGA 58.735 45.455 1.90 0.00 0.00 3.27
4265 4795 4.464008 TCAGAAGACATTTCCACTGCTTT 58.536 39.130 0.00 0.00 0.00 3.51
4284 4814 2.743928 GCAGAAGGCTCGTGGTGG 60.744 66.667 0.00 0.00 40.25 4.61
4289 4819 0.822121 GAAGGCTCGTGGTGGGTTTT 60.822 55.000 0.00 0.00 0.00 2.43
4290 4820 0.822121 AAGGCTCGTGGTGGGTTTTC 60.822 55.000 0.00 0.00 0.00 2.29
4291 4821 1.228154 GGCTCGTGGTGGGTTTTCT 60.228 57.895 0.00 0.00 0.00 2.52
4292 4822 1.235281 GGCTCGTGGTGGGTTTTCTC 61.235 60.000 0.00 0.00 0.00 2.87
4293 4823 1.235281 GCTCGTGGTGGGTTTTCTCC 61.235 60.000 0.00 0.00 0.00 3.71
4294 4824 0.107831 CTCGTGGTGGGTTTTCTCCA 59.892 55.000 0.00 0.00 0.00 3.86
4295 4825 0.107831 TCGTGGTGGGTTTTCTCCAG 59.892 55.000 0.00 0.00 34.56 3.86
4298 4828 3.439440 GGTGGGTTTTCTCCAGCTT 57.561 52.632 5.21 0.00 46.08 3.74
4299 4829 1.704641 GGTGGGTTTTCTCCAGCTTT 58.295 50.000 5.21 0.00 46.08 3.51
4300 4830 1.341209 GGTGGGTTTTCTCCAGCTTTG 59.659 52.381 5.21 0.00 46.08 2.77
4301 4831 1.341209 GTGGGTTTTCTCCAGCTTTGG 59.659 52.381 0.00 0.00 34.56 3.28
4302 4832 0.318441 GGGTTTTCTCCAGCTTTGGC 59.682 55.000 0.00 0.00 39.06 4.52
4356 4886 4.882671 TTAAGAGAAATGCATCTTCCGC 57.117 40.909 0.00 2.52 37.05 5.54
4357 4887 1.673168 AGAGAAATGCATCTTCCGCC 58.327 50.000 0.00 0.15 0.00 6.13
4358 4888 0.305922 GAGAAATGCATCTTCCGCCG 59.694 55.000 0.00 0.00 0.00 6.46
4359 4889 1.298638 GAAATGCATCTTCCGCCGC 60.299 57.895 0.00 0.00 0.00 6.53
4360 4890 1.718757 GAAATGCATCTTCCGCCGCT 61.719 55.000 0.00 0.00 0.00 5.52
4361 4891 1.996786 AAATGCATCTTCCGCCGCTG 61.997 55.000 0.00 0.00 0.00 5.18
4362 4892 2.874648 AATGCATCTTCCGCCGCTGA 62.875 55.000 0.00 0.00 0.00 4.26
4363 4893 3.267860 GCATCTTCCGCCGCTGAG 61.268 66.667 0.00 0.00 0.00 3.35
4364 4894 3.267860 CATCTTCCGCCGCTGAGC 61.268 66.667 0.00 0.00 0.00 4.26
4365 4895 3.465403 ATCTTCCGCCGCTGAGCT 61.465 61.111 1.78 0.00 0.00 4.09
4366 4896 3.023949 ATCTTCCGCCGCTGAGCTT 62.024 57.895 1.78 0.00 0.00 3.74
4367 4897 3.494336 CTTCCGCCGCTGAGCTTG 61.494 66.667 1.78 0.00 0.00 4.01
4368 4898 4.314440 TTCCGCCGCTGAGCTTGT 62.314 61.111 1.78 0.00 0.00 3.16
4369 4899 2.835701 CTTCCGCCGCTGAGCTTGTA 62.836 60.000 1.78 0.00 0.00 2.41
4370 4900 3.188786 CCGCCGCTGAGCTTGTAC 61.189 66.667 1.78 0.00 0.00 2.90
4371 4901 3.545481 CGCCGCTGAGCTTGTACG 61.545 66.667 1.78 0.00 0.00 3.67
4372 4902 2.432628 GCCGCTGAGCTTGTACGT 60.433 61.111 1.78 0.00 0.00 3.57
4373 4903 1.153901 GCCGCTGAGCTTGTACGTA 60.154 57.895 1.78 0.00 0.00 3.57
4374 4904 1.411493 GCCGCTGAGCTTGTACGTAC 61.411 60.000 18.90 18.90 0.00 3.67
4375 4905 0.170561 CCGCTGAGCTTGTACGTACT 59.829 55.000 25.12 6.08 0.00 2.73
4376 4906 1.260206 CGCTGAGCTTGTACGTACTG 58.740 55.000 25.12 18.23 0.00 2.74
4377 4907 1.630148 GCTGAGCTTGTACGTACTGG 58.370 55.000 25.12 17.83 0.00 4.00
4378 4908 1.736032 GCTGAGCTTGTACGTACTGGG 60.736 57.143 25.12 15.63 0.00 4.45
4379 4909 1.816835 CTGAGCTTGTACGTACTGGGA 59.183 52.381 25.12 3.27 0.00 4.37
4380 4910 1.816835 TGAGCTTGTACGTACTGGGAG 59.183 52.381 25.12 17.40 0.00 4.30
4381 4911 2.089980 GAGCTTGTACGTACTGGGAGA 58.910 52.381 25.12 2.11 0.00 3.71
4382 4912 2.093106 AGCTTGTACGTACTGGGAGAG 58.907 52.381 25.12 13.85 0.00 3.20
4383 4913 2.089980 GCTTGTACGTACTGGGAGAGA 58.910 52.381 25.12 0.60 0.00 3.10
4384 4914 2.490903 GCTTGTACGTACTGGGAGAGAA 59.509 50.000 25.12 8.68 0.00 2.87
4385 4915 3.130693 GCTTGTACGTACTGGGAGAGAAT 59.869 47.826 25.12 0.00 0.00 2.40
4386 4916 4.381718 GCTTGTACGTACTGGGAGAGAATT 60.382 45.833 25.12 0.00 0.00 2.17
4387 4917 5.721232 CTTGTACGTACTGGGAGAGAATTT 58.279 41.667 25.12 0.00 0.00 1.82
4388 4918 6.626623 GCTTGTACGTACTGGGAGAGAATTTA 60.627 42.308 25.12 0.00 0.00 1.40
4389 4919 6.199937 TGTACGTACTGGGAGAGAATTTAC 57.800 41.667 25.12 0.00 0.00 2.01
4390 4920 5.948162 TGTACGTACTGGGAGAGAATTTACT 59.052 40.000 25.12 0.00 0.00 2.24
4391 4921 5.997384 ACGTACTGGGAGAGAATTTACTT 57.003 39.130 0.00 0.00 0.00 2.24
4392 4922 5.721232 ACGTACTGGGAGAGAATTTACTTG 58.279 41.667 0.00 0.00 0.00 3.16
4393 4923 5.479375 ACGTACTGGGAGAGAATTTACTTGA 59.521 40.000 0.00 0.00 0.00 3.02
4394 4924 6.037098 CGTACTGGGAGAGAATTTACTTGAG 58.963 44.000 0.00 0.00 0.00 3.02
4395 4925 6.127703 CGTACTGGGAGAGAATTTACTTGAGA 60.128 42.308 0.00 0.00 0.00 3.27
4396 4926 6.688073 ACTGGGAGAGAATTTACTTGAGAA 57.312 37.500 0.00 0.00 0.00 2.87
4397 4927 6.706295 ACTGGGAGAGAATTTACTTGAGAAG 58.294 40.000 0.00 0.00 0.00 2.85
4398 4928 5.491982 TGGGAGAGAATTTACTTGAGAAGC 58.508 41.667 0.00 0.00 0.00 3.86
4399 4929 5.013079 TGGGAGAGAATTTACTTGAGAAGCA 59.987 40.000 0.00 0.00 0.00 3.91
4400 4930 5.584251 GGGAGAGAATTTACTTGAGAAGCAG 59.416 44.000 0.00 0.00 0.00 4.24
4401 4931 6.402222 GGAGAGAATTTACTTGAGAAGCAGA 58.598 40.000 0.00 0.00 0.00 4.26
4402 4932 6.534793 GGAGAGAATTTACTTGAGAAGCAGAG 59.465 42.308 0.00 0.00 0.00 3.35
4403 4933 6.405538 AGAGAATTTACTTGAGAAGCAGAGG 58.594 40.000 0.00 0.00 0.00 3.69
4404 4934 6.212388 AGAGAATTTACTTGAGAAGCAGAGGA 59.788 38.462 0.00 0.00 0.00 3.71
4405 4935 6.773638 AGAATTTACTTGAGAAGCAGAGGAA 58.226 36.000 0.00 0.00 0.00 3.36
4406 4936 6.878389 AGAATTTACTTGAGAAGCAGAGGAAG 59.122 38.462 0.00 0.00 0.00 3.46
4407 4937 4.543590 TTACTTGAGAAGCAGAGGAAGG 57.456 45.455 0.00 0.00 0.00 3.46
4408 4938 2.614259 ACTTGAGAAGCAGAGGAAGGA 58.386 47.619 0.00 0.00 0.00 3.36
4409 4939 2.566724 ACTTGAGAAGCAGAGGAAGGAG 59.433 50.000 0.00 0.00 0.00 3.69
4410 4940 2.612285 TGAGAAGCAGAGGAAGGAGA 57.388 50.000 0.00 0.00 0.00 3.71
4411 4941 2.175202 TGAGAAGCAGAGGAAGGAGAC 58.825 52.381 0.00 0.00 0.00 3.36
4412 4942 2.175202 GAGAAGCAGAGGAAGGAGACA 58.825 52.381 0.00 0.00 0.00 3.41
4413 4943 2.564947 GAGAAGCAGAGGAAGGAGACAA 59.435 50.000 0.00 0.00 0.00 3.18
4414 4944 2.566724 AGAAGCAGAGGAAGGAGACAAG 59.433 50.000 0.00 0.00 0.00 3.16
4415 4945 2.317371 AGCAGAGGAAGGAGACAAGA 57.683 50.000 0.00 0.00 0.00 3.02
4416 4946 2.831565 AGCAGAGGAAGGAGACAAGAT 58.168 47.619 0.00 0.00 0.00 2.40
4417 4947 2.500910 AGCAGAGGAAGGAGACAAGATG 59.499 50.000 0.00 0.00 0.00 2.90
4418 4948 2.419851 GCAGAGGAAGGAGACAAGATGG 60.420 54.545 0.00 0.00 0.00 3.51
4466 4996 5.123820 TCAAGTTTCAGGTTCAGTTGAGTTG 59.876 40.000 0.00 0.00 0.00 3.16
4486 5016 3.993535 CTCAGGAGCCAACCAAGC 58.006 61.111 0.00 0.00 0.00 4.01
4490 5020 2.361737 GGAGCCAACCAAGCCTCC 60.362 66.667 0.00 0.00 0.00 4.30
4499 5029 1.219393 CCAAGCCTCCGTCTCCTTC 59.781 63.158 0.00 0.00 0.00 3.46
4500 5030 1.219393 CAAGCCTCCGTCTCCTTCC 59.781 63.158 0.00 0.00 0.00 3.46
4501 5031 1.079438 AAGCCTCCGTCTCCTTCCT 59.921 57.895 0.00 0.00 0.00 3.36
4502 5032 0.545548 AAGCCTCCGTCTCCTTCCTT 60.546 55.000 0.00 0.00 0.00 3.36
4503 5033 0.335361 AGCCTCCGTCTCCTTCCTTA 59.665 55.000 0.00 0.00 0.00 2.69
4504 5034 1.192428 GCCTCCGTCTCCTTCCTTAA 58.808 55.000 0.00 0.00 0.00 1.85
4505 5035 1.763545 GCCTCCGTCTCCTTCCTTAAT 59.236 52.381 0.00 0.00 0.00 1.40
4506 5036 2.224090 GCCTCCGTCTCCTTCCTTAATC 60.224 54.545 0.00 0.00 0.00 1.75
4507 5037 2.365941 CCTCCGTCTCCTTCCTTAATCC 59.634 54.545 0.00 0.00 0.00 3.01
4508 5038 2.365941 CTCCGTCTCCTTCCTTAATCCC 59.634 54.545 0.00 0.00 0.00 3.85
4509 5039 2.116238 CCGTCTCCTTCCTTAATCCCA 58.884 52.381 0.00 0.00 0.00 4.37
4510 5040 2.706190 CCGTCTCCTTCCTTAATCCCAT 59.294 50.000 0.00 0.00 0.00 4.00
4511 5041 3.495100 CCGTCTCCTTCCTTAATCCCATG 60.495 52.174 0.00 0.00 0.00 3.66
4512 5042 3.134804 CGTCTCCTTCCTTAATCCCATGT 59.865 47.826 0.00 0.00 0.00 3.21
4513 5043 4.344102 CGTCTCCTTCCTTAATCCCATGTA 59.656 45.833 0.00 0.00 0.00 2.29
4514 5044 5.612351 GTCTCCTTCCTTAATCCCATGTAC 58.388 45.833 0.00 0.00 0.00 2.90
4515 5045 4.658901 TCTCCTTCCTTAATCCCATGTACC 59.341 45.833 0.00 0.00 0.00 3.34
4516 5046 4.376223 TCCTTCCTTAATCCCATGTACCA 58.624 43.478 0.00 0.00 0.00 3.25
4517 5047 4.165372 TCCTTCCTTAATCCCATGTACCAC 59.835 45.833 0.00 0.00 0.00 4.16
4518 5048 4.166144 CCTTCCTTAATCCCATGTACCACT 59.834 45.833 0.00 0.00 0.00 4.00
4519 5049 4.771114 TCCTTAATCCCATGTACCACTG 57.229 45.455 0.00 0.00 0.00 3.66
4520 5050 4.108570 TCCTTAATCCCATGTACCACTGT 58.891 43.478 0.00 0.00 0.00 3.55
4521 5051 5.282129 TCCTTAATCCCATGTACCACTGTA 58.718 41.667 0.00 0.00 0.00 2.74
4522 5052 5.908831 TCCTTAATCCCATGTACCACTGTAT 59.091 40.000 0.00 0.00 0.00 2.29
4523 5053 6.388689 TCCTTAATCCCATGTACCACTGTATT 59.611 38.462 0.00 0.00 0.00 1.89
4524 5054 7.060421 CCTTAATCCCATGTACCACTGTATTT 58.940 38.462 0.00 0.00 0.00 1.40
4525 5055 7.228706 CCTTAATCCCATGTACCACTGTATTTC 59.771 40.741 0.00 0.00 0.00 2.17
4526 5056 5.975988 ATCCCATGTACCACTGTATTTCT 57.024 39.130 0.00 0.00 0.00 2.52
4527 5057 5.353394 TCCCATGTACCACTGTATTTCTC 57.647 43.478 0.00 0.00 0.00 2.87
4528 5058 5.030147 TCCCATGTACCACTGTATTTCTCT 58.970 41.667 0.00 0.00 0.00 3.10
4529 5059 6.199376 TCCCATGTACCACTGTATTTCTCTA 58.801 40.000 0.00 0.00 0.00 2.43
4530 5060 6.323996 TCCCATGTACCACTGTATTTCTCTAG 59.676 42.308 0.00 0.00 0.00 2.43
4531 5061 5.986135 CCATGTACCACTGTATTTCTCTAGC 59.014 44.000 0.00 0.00 0.00 3.42
4532 5062 6.183360 CCATGTACCACTGTATTTCTCTAGCT 60.183 42.308 0.00 0.00 0.00 3.32
4533 5063 7.014326 CCATGTACCACTGTATTTCTCTAGCTA 59.986 40.741 0.00 0.00 0.00 3.32
4534 5064 8.580720 CATGTACCACTGTATTTCTCTAGCTAT 58.419 37.037 0.00 0.00 0.00 2.97
4535 5065 7.941919 TGTACCACTGTATTTCTCTAGCTATG 58.058 38.462 0.00 0.00 0.00 2.23
4536 5066 5.848406 ACCACTGTATTTCTCTAGCTATGC 58.152 41.667 0.00 0.00 0.00 3.14
4537 5067 5.600484 ACCACTGTATTTCTCTAGCTATGCT 59.400 40.000 0.00 0.00 43.41 3.79
4538 5068 5.925397 CCACTGTATTTCTCTAGCTATGCTG 59.075 44.000 1.96 0.00 40.10 4.41
4539 5069 6.462207 CCACTGTATTTCTCTAGCTATGCTGT 60.462 42.308 1.96 0.00 40.10 4.40
4540 5070 6.420306 CACTGTATTTCTCTAGCTATGCTGTG 59.580 42.308 1.96 0.00 40.10 3.66
4541 5071 5.292765 TGTATTTCTCTAGCTATGCTGTGC 58.707 41.667 1.96 0.00 40.10 4.57
4542 5072 3.893326 TTTCTCTAGCTATGCTGTGCA 57.107 42.857 1.96 0.00 44.86 4.57
4543 5073 3.449528 TTCTCTAGCTATGCTGTGCAG 57.550 47.619 1.96 0.00 43.65 4.41
4544 5074 2.382882 TCTCTAGCTATGCTGTGCAGT 58.617 47.619 1.96 0.00 43.65 4.40
4545 5075 3.555966 TCTCTAGCTATGCTGTGCAGTA 58.444 45.455 1.96 0.00 43.65 2.74
4546 5076 3.954258 TCTCTAGCTATGCTGTGCAGTAA 59.046 43.478 1.96 0.00 43.65 2.24
4547 5077 4.586421 TCTCTAGCTATGCTGTGCAGTAAT 59.414 41.667 1.96 0.00 43.65 1.89
4548 5078 5.770162 TCTCTAGCTATGCTGTGCAGTAATA 59.230 40.000 1.96 0.18 43.65 0.98
4549 5079 6.265422 TCTCTAGCTATGCTGTGCAGTAATAA 59.735 38.462 1.96 0.00 43.65 1.40
4550 5080 6.997655 TCTAGCTATGCTGTGCAGTAATAAT 58.002 36.000 1.96 0.00 43.65 1.28
4551 5081 7.093354 TCTAGCTATGCTGTGCAGTAATAATC 58.907 38.462 1.96 0.00 43.65 1.75
4552 5082 5.614308 AGCTATGCTGTGCAGTAATAATCA 58.386 37.500 0.00 0.00 43.65 2.57
4553 5083 5.699915 AGCTATGCTGTGCAGTAATAATCAG 59.300 40.000 0.00 0.00 43.65 2.90
4554 5084 5.468072 GCTATGCTGTGCAGTAATAATCAGT 59.532 40.000 0.00 0.00 43.65 3.41
4555 5085 6.646653 GCTATGCTGTGCAGTAATAATCAGTA 59.353 38.462 0.00 0.00 43.65 2.74
4556 5086 7.332926 GCTATGCTGTGCAGTAATAATCAGTAT 59.667 37.037 5.78 5.78 43.65 2.12
4557 5087 9.860898 CTATGCTGTGCAGTAATAATCAGTATA 57.139 33.333 7.09 7.09 43.65 1.47
4558 5088 8.768957 ATGCTGTGCAGTAATAATCAGTATAG 57.231 34.615 0.00 0.00 43.65 1.31
4559 5089 6.646653 TGCTGTGCAGTAATAATCAGTATAGC 59.353 38.462 0.00 0.00 33.32 2.97
4560 5090 6.870965 GCTGTGCAGTAATAATCAGTATAGCT 59.129 38.462 0.00 0.00 0.00 3.32
4561 5091 8.029522 GCTGTGCAGTAATAATCAGTATAGCTA 58.970 37.037 0.00 0.00 0.00 3.32
4564 5094 9.522804 GTGCAGTAATAATCAGTATAGCTATCC 57.477 37.037 10.16 0.00 0.00 2.59
4565 5095 9.480861 TGCAGTAATAATCAGTATAGCTATCCT 57.519 33.333 10.16 0.15 0.00 3.24
4572 5102 6.723298 ATCAGTATAGCTATCCTATGTGGC 57.277 41.667 10.16 0.00 37.34 5.01
4573 5103 4.640647 TCAGTATAGCTATCCTATGTGGCG 59.359 45.833 10.16 0.00 37.34 5.69
4574 5104 4.399618 CAGTATAGCTATCCTATGTGGCGT 59.600 45.833 10.16 0.00 37.34 5.68
4575 5105 5.017490 AGTATAGCTATCCTATGTGGCGTT 58.983 41.667 10.16 0.00 37.34 4.84
4576 5106 2.533266 AGCTATCCTATGTGGCGTTG 57.467 50.000 0.00 0.00 35.26 4.10
4577 5107 0.868406 GCTATCCTATGTGGCGTTGC 59.132 55.000 0.00 0.00 35.26 4.17
4578 5108 1.541233 GCTATCCTATGTGGCGTTGCT 60.541 52.381 0.00 0.00 35.26 3.91
4579 5109 2.408050 CTATCCTATGTGGCGTTGCTC 58.592 52.381 0.00 0.00 35.26 4.26
4580 5110 0.833287 ATCCTATGTGGCGTTGCTCT 59.167 50.000 0.00 0.00 35.26 4.09
4581 5111 0.613260 TCCTATGTGGCGTTGCTCTT 59.387 50.000 0.00 0.00 35.26 2.85
4582 5112 0.729116 CCTATGTGGCGTTGCTCTTG 59.271 55.000 0.00 0.00 0.00 3.02
4583 5113 0.097674 CTATGTGGCGTTGCTCTTGC 59.902 55.000 0.00 0.00 40.20 4.01
4584 5114 0.321564 TATGTGGCGTTGCTCTTGCT 60.322 50.000 0.00 0.00 40.48 3.91
4585 5115 1.859427 ATGTGGCGTTGCTCTTGCTG 61.859 55.000 0.00 0.00 40.48 4.41
4586 5116 2.979676 TGGCGTTGCTCTTGCTGG 60.980 61.111 0.00 0.00 40.48 4.85
4587 5117 2.669569 GGCGTTGCTCTTGCTGGA 60.670 61.111 0.00 0.00 40.48 3.86
4588 5118 2.260869 GGCGTTGCTCTTGCTGGAA 61.261 57.895 0.00 0.00 40.48 3.53
4589 5119 1.081840 GCGTTGCTCTTGCTGGAAC 60.082 57.895 0.00 0.00 40.48 3.62
4590 5120 1.510480 GCGTTGCTCTTGCTGGAACT 61.510 55.000 0.00 0.00 40.48 3.01
4591 5121 0.236711 CGTTGCTCTTGCTGGAACTG 59.763 55.000 0.00 0.00 40.48 3.16
4614 5144 4.899239 CGTCGCAGGCAGGGGATC 62.899 72.222 0.00 0.00 32.04 3.36
4615 5145 4.554036 GTCGCAGGCAGGGGATCC 62.554 72.222 1.92 1.92 32.04 3.36
4616 5146 4.804420 TCGCAGGCAGGGGATCCT 62.804 66.667 12.58 0.00 46.26 3.24
4624 5154 2.283809 AGGGGATCCTGAGGACGG 59.716 66.667 12.58 0.00 42.98 4.79
4625 5155 2.282446 GGGGATCCTGAGGACGGA 59.718 66.667 12.58 0.00 32.98 4.69
4626 5156 2.134933 GGGGATCCTGAGGACGGAC 61.135 68.421 12.58 0.00 32.98 4.79
4627 5157 2.491022 GGGATCCTGAGGACGGACG 61.491 68.421 12.58 0.00 32.98 4.79
4628 5158 2.413765 GATCCTGAGGACGGACGC 59.586 66.667 1.77 0.00 32.98 5.19
4629 5159 3.140225 GATCCTGAGGACGGACGCC 62.140 68.421 1.77 0.00 32.98 5.68
4649 5179 4.078516 GCTGGCCGTACCCGAACT 62.079 66.667 0.00 0.00 37.83 3.01
4650 5180 2.125673 CTGGCCGTACCCGAACTG 60.126 66.667 0.00 0.00 37.83 3.16
4651 5181 4.382320 TGGCCGTACCCGAACTGC 62.382 66.667 0.00 0.00 37.83 4.40
4652 5182 4.078516 GGCCGTACCCGAACTGCT 62.079 66.667 0.00 0.00 35.63 4.24
4653 5183 2.813908 GCCGTACCCGAACTGCTG 60.814 66.667 0.00 0.00 35.63 4.41
4654 5184 2.813908 CCGTACCCGAACTGCTGC 60.814 66.667 0.00 0.00 35.63 5.25
4655 5185 3.179265 CGTACCCGAACTGCTGCG 61.179 66.667 0.00 0.00 35.63 5.18
4656 5186 3.488090 GTACCCGAACTGCTGCGC 61.488 66.667 0.00 0.00 0.00 6.09
4657 5187 4.752879 TACCCGAACTGCTGCGCC 62.753 66.667 4.18 0.00 0.00 6.53
4676 5206 2.046023 CCATGCACGGCTCCTTGA 60.046 61.111 0.00 0.00 0.00 3.02
4677 5207 2.110967 CCATGCACGGCTCCTTGAG 61.111 63.158 0.00 0.00 0.00 3.02
4686 5216 4.880537 CTCCTTGAGCGCGCCGAT 62.881 66.667 30.33 9.92 0.00 4.18
4701 5231 4.722700 GATGCGCACCACCACCCT 62.723 66.667 14.90 0.00 0.00 4.34
4702 5232 4.722700 ATGCGCACCACCACCCTC 62.723 66.667 14.90 0.00 0.00 4.30
4705 5235 4.394712 CGCACCACCACCCTCTCC 62.395 72.222 0.00 0.00 0.00 3.71
4706 5236 2.930562 GCACCACCACCCTCTCCT 60.931 66.667 0.00 0.00 0.00 3.69
4707 5237 2.960688 GCACCACCACCCTCTCCTC 61.961 68.421 0.00 0.00 0.00 3.71
4708 5238 2.283966 ACCACCACCCTCTCCTCG 60.284 66.667 0.00 0.00 0.00 4.63
4709 5239 3.775654 CCACCACCCTCTCCTCGC 61.776 72.222 0.00 0.00 0.00 5.03
4710 5240 3.775654 CACCACCCTCTCCTCGCC 61.776 72.222 0.00 0.00 0.00 5.54
4713 5243 3.827898 CACCCTCTCCTCGCCGTC 61.828 72.222 0.00 0.00 0.00 4.79
4718 5248 4.458829 TCTCCTCGCCGTCCCCAT 62.459 66.667 0.00 0.00 0.00 4.00
4719 5249 3.917760 CTCCTCGCCGTCCCCATC 61.918 72.222 0.00 0.00 0.00 3.51
4722 5252 3.917760 CTCGCCGTCCCCATCCTC 61.918 72.222 0.00 0.00 0.00 3.71
4728 5258 4.176752 GTCCCCATCCTCGCCCAC 62.177 72.222 0.00 0.00 0.00 4.61
4731 5261 4.181010 CCCATCCTCGCCCACCAG 62.181 72.222 0.00 0.00 0.00 4.00
4732 5262 4.864334 CCATCCTCGCCCACCAGC 62.864 72.222 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 160 2.562738 GGGTTTTCCTTGTCCCATCTTG 59.437 50.000 0.00 0.00 39.68 3.02
263 269 1.003839 TCGGTGGTGGCAAAGCTAG 60.004 57.895 0.00 0.00 0.00 3.42
279 285 0.878523 TCACCGGAAACTTGCTGTCG 60.879 55.000 9.46 0.00 0.00 4.35
283 289 1.172812 GGCTTCACCGGAAACTTGCT 61.173 55.000 9.46 0.00 31.35 3.91
286 292 0.106918 TGTGGCTTCACCGGAAACTT 60.107 50.000 9.46 0.00 43.94 2.66
287 293 0.535102 CTGTGGCTTCACCGGAAACT 60.535 55.000 9.46 0.00 43.94 2.66
288 294 1.949257 CTGTGGCTTCACCGGAAAC 59.051 57.895 9.46 0.00 43.94 2.78
289 295 1.896660 GCTGTGGCTTCACCGGAAA 60.897 57.895 9.46 0.25 43.94 3.13
298 314 5.627503 AAAAGTGATTTTTCAGCTGTGGCTT 60.628 36.000 14.67 5.58 39.02 4.35
340 356 1.188871 TGGACATCTACCACGTGCCA 61.189 55.000 10.91 6.60 32.03 4.92
384 400 2.282180 GAAACAGCGGGAAGGGCA 60.282 61.111 0.00 0.00 0.00 5.36
506 522 1.134159 ACAGCTGGGAGATCTGAATGC 60.134 52.381 19.93 0.00 0.00 3.56
784 801 5.998454 CAGTATTTGCTACTCCCAATCTG 57.002 43.478 0.00 0.00 38.68 2.90
816 836 2.558378 ACACATATACAGCAGCAGCAG 58.442 47.619 3.17 0.00 45.49 4.24
817 837 2.679336 CAACACATATACAGCAGCAGCA 59.321 45.455 3.17 0.00 45.49 4.41
818 838 2.032550 CCAACACATATACAGCAGCAGC 59.967 50.000 0.00 0.00 42.56 5.25
819 839 3.273434 ACCAACACATATACAGCAGCAG 58.727 45.455 0.00 0.00 0.00 4.24
820 840 3.348647 ACCAACACATATACAGCAGCA 57.651 42.857 0.00 0.00 0.00 4.41
821 841 3.440173 ACAACCAACACATATACAGCAGC 59.560 43.478 0.00 0.00 0.00 5.25
822 842 4.694982 TGACAACCAACACATATACAGCAG 59.305 41.667 0.00 0.00 0.00 4.24
823 843 4.646572 TGACAACCAACACATATACAGCA 58.353 39.130 0.00 0.00 0.00 4.41
824 844 5.621197 TTGACAACCAACACATATACAGC 57.379 39.130 0.00 0.00 0.00 4.40
847 867 9.521841 TCATACTAATAGGGAGACAGTGAATAG 57.478 37.037 0.00 0.00 0.00 1.73
897 977 6.320171 CACTCCTGCAGAAATCAAGTATTTG 58.680 40.000 17.39 0.00 37.93 2.32
899 979 4.397417 GCACTCCTGCAGAAATCAAGTATT 59.603 41.667 17.39 0.00 43.62 1.89
901 981 3.338249 GCACTCCTGCAGAAATCAAGTA 58.662 45.455 17.39 0.00 43.62 2.24
903 983 1.129998 CGCACTCCTGCAGAAATCAAG 59.870 52.381 17.39 5.08 44.50 3.02
904 984 1.159285 CGCACTCCTGCAGAAATCAA 58.841 50.000 17.39 0.00 44.50 2.57
905 985 0.674581 CCGCACTCCTGCAGAAATCA 60.675 55.000 17.39 0.00 44.50 2.57
906 986 1.372087 CCCGCACTCCTGCAGAAATC 61.372 60.000 17.39 0.00 44.50 2.17
907 987 1.377725 CCCGCACTCCTGCAGAAAT 60.378 57.895 17.39 0.00 44.50 2.17
923 1003 5.542779 CTGAGCCTCAGTATTATACAACCC 58.457 45.833 13.74 0.00 39.58 4.11
969 1049 7.226720 CAGTGTAGTCAGGTTACAAACAGAAAT 59.773 37.037 0.00 0.00 33.19 2.17
1037 1117 3.761218 CACGCCATCTACTATCTCAGGAT 59.239 47.826 0.00 0.00 36.07 3.24
1041 1121 1.613925 GGCACGCCATCTACTATCTCA 59.386 52.381 2.36 0.00 35.81 3.27
1507 1587 7.079451 AGTCAAAAATCCTTCTCTTGGTAGA 57.921 36.000 0.00 0.00 0.00 2.59
1596 1676 0.547471 TCCTCATGAAGGCTGGTCCA 60.547 55.000 0.00 0.00 45.78 4.02
2110 2190 1.060163 ACTACCTGGCCCACAAGTGT 61.060 55.000 0.00 0.00 0.00 3.55
2147 2227 4.916041 TCAACATCCTCCTTTGACAGAT 57.084 40.909 0.00 0.00 0.00 2.90
2334 2414 6.380079 ACAGTGGATTTTGGAGTAGAATCT 57.620 37.500 0.00 0.00 31.96 2.40
2468 2548 3.195825 AGTTCCCTTCGGATACTTCTGTG 59.804 47.826 0.00 0.00 38.24 3.66
2472 2552 5.334724 TGTTAGTTCCCTTCGGATACTTC 57.665 43.478 0.00 0.00 38.24 3.01
2512 2592 5.974108 TCTACCAGTACCAATAAACTCTGC 58.026 41.667 0.00 0.00 0.00 4.26
2540 2620 2.552315 GTGGCCTTCAAAATCTCGTCAA 59.448 45.455 3.32 0.00 0.00 3.18
2593 2673 6.987992 TCAAGGAACGAGTTAAAAGCTTTAGA 59.012 34.615 13.10 0.38 0.00 2.10
2605 2685 1.865340 GCGTTTCTCAAGGAACGAGTT 59.135 47.619 24.07 0.00 33.59 3.01
2682 2762 1.673665 GCCAGCTCCCACAGTTGAG 60.674 63.158 0.00 0.00 35.34 3.02
2695 2775 3.134127 GGATGGTTCGGTGCCAGC 61.134 66.667 0.00 0.00 41.30 4.85
2703 2783 3.508840 GCGGCCTTGGATGGTTCG 61.509 66.667 0.00 0.00 0.00 3.95
2718 2798 2.253452 GCAGCAGGTTGTTCAGCG 59.747 61.111 0.00 0.00 0.00 5.18
2751 2831 3.503363 CAGCACCAGTTTTCTCATTAGCA 59.497 43.478 0.00 0.00 0.00 3.49
2757 2837 2.373169 AGGATCAGCACCAGTTTTCTCA 59.627 45.455 0.00 0.00 0.00 3.27
2817 2897 2.121963 ACCTGGGCCTCTGACCAA 60.122 61.111 4.53 0.00 36.09 3.67
2868 2948 3.008266 CCCATCTTTGGTTTGCATCCTTT 59.992 43.478 9.35 0.00 41.91 3.11
2949 3029 2.263077 CGGAAGTTCGTCCTCATTGAG 58.737 52.381 6.70 6.70 35.31 3.02
3135 3345 9.950496 AATGTAAAAGATAACACTCTGATCAGT 57.050 29.630 21.92 5.34 0.00 3.41
3257 3468 9.613428 CAGGTTCTACAACAAAGATATAATCCA 57.387 33.333 0.00 0.00 33.70 3.41
3515 3938 6.991531 TGGTTTTTGCAGCTTTCTAATTTCAT 59.008 30.769 0.00 0.00 0.00 2.57
3602 4040 2.906691 CTCCAACTCATGCTAGGAGG 57.093 55.000 12.66 0.00 41.65 4.30
3640 4079 0.680921 ATCCAACAGCAATCCACCCG 60.681 55.000 0.00 0.00 0.00 5.28
3678 4182 4.022849 AGCAGACAAGGTTCAGCAAAATAC 60.023 41.667 0.00 0.00 30.66 1.89
3682 4186 1.677576 CAGCAGACAAGGTTCAGCAAA 59.322 47.619 0.00 0.00 30.66 3.68
3688 4192 1.312815 AAGCACAGCAGACAAGGTTC 58.687 50.000 0.00 0.00 0.00 3.62
3707 4211 1.136695 CTTCTTGTGTGGCCTGCAAAA 59.863 47.619 3.32 3.73 0.00 2.44
3789 4293 1.226435 CTTCGAAGCCTCGTCTCCG 60.226 63.158 13.09 0.00 45.62 4.63
3837 4344 0.539669 TCAGCGACTTCAGGGACTCA 60.540 55.000 0.00 0.00 34.60 3.41
4040 4564 5.049543 ACCAGATATCTTAACGACGACTAGC 60.050 44.000 1.33 0.00 0.00 3.42
4041 4565 6.202379 TCACCAGATATCTTAACGACGACTAG 59.798 42.308 1.33 0.00 0.00 2.57
4042 4566 6.051074 TCACCAGATATCTTAACGACGACTA 58.949 40.000 1.33 0.00 0.00 2.59
4043 4567 4.880120 TCACCAGATATCTTAACGACGACT 59.120 41.667 1.33 0.00 0.00 4.18
4107 4635 3.251729 GCAGCAAGACATCAAGAGAAACA 59.748 43.478 0.00 0.00 0.00 2.83
4108 4636 3.501445 AGCAGCAAGACATCAAGAGAAAC 59.499 43.478 0.00 0.00 0.00 2.78
4109 4637 3.748083 AGCAGCAAGACATCAAGAGAAA 58.252 40.909 0.00 0.00 0.00 2.52
4132 4662 6.917477 CAGACAAGACTAAGATGATGAGCTAC 59.083 42.308 0.00 0.00 0.00 3.58
4163 4693 1.068753 CGCCATCTGTCTAGGGCAG 59.931 63.158 6.31 7.39 46.75 4.85
4164 4694 1.381191 TCGCCATCTGTCTAGGGCA 60.381 57.895 6.31 0.00 46.75 5.36
4165 4695 1.068250 GTCGCCATCTGTCTAGGGC 59.932 63.158 0.00 0.00 42.98 5.19
4166 4696 0.387202 CTGTCGCCATCTGTCTAGGG 59.613 60.000 0.00 0.00 0.00 3.53
4233 4763 5.412594 GGAAATGTCTTCTGAGCACAACATA 59.587 40.000 0.51 0.00 0.00 2.29
4236 4766 3.565482 TGGAAATGTCTTCTGAGCACAAC 59.435 43.478 0.00 0.00 0.00 3.32
4247 4777 4.773323 GCTAAAGCAGTGGAAATGTCTT 57.227 40.909 0.00 0.00 41.59 3.01
4269 4799 1.705997 AAACCCACCACGAGCCTTCT 61.706 55.000 0.00 0.00 0.00 2.85
4284 4814 3.894257 GCCAAAGCTGGAGAAAACC 57.106 52.632 0.00 0.00 46.92 3.27
4330 4860 8.721478 GCGGAAGATGCATTTCTCTTAAATATA 58.279 33.333 0.00 0.00 31.99 0.86
4331 4861 7.308830 GGCGGAAGATGCATTTCTCTTAAATAT 60.309 37.037 0.00 0.00 31.99 1.28
4332 4862 6.017109 GGCGGAAGATGCATTTCTCTTAAATA 60.017 38.462 0.00 0.00 31.99 1.40
4333 4863 5.221126 GGCGGAAGATGCATTTCTCTTAAAT 60.221 40.000 0.00 0.00 31.99 1.40
4334 4864 4.096382 GGCGGAAGATGCATTTCTCTTAAA 59.904 41.667 0.00 0.00 31.99 1.52
4335 4865 3.627577 GGCGGAAGATGCATTTCTCTTAA 59.372 43.478 0.00 0.00 31.99 1.85
4336 4866 3.206150 GGCGGAAGATGCATTTCTCTTA 58.794 45.455 0.00 0.00 31.99 2.10
4337 4867 2.019984 GGCGGAAGATGCATTTCTCTT 58.980 47.619 0.00 0.00 34.48 2.85
4338 4868 1.673168 GGCGGAAGATGCATTTCTCT 58.327 50.000 0.00 0.00 0.00 3.10
4339 4869 0.305922 CGGCGGAAGATGCATTTCTC 59.694 55.000 0.00 0.00 0.00 2.87
4340 4870 1.718757 GCGGCGGAAGATGCATTTCT 61.719 55.000 9.78 0.00 33.67 2.52
4341 4871 1.298638 GCGGCGGAAGATGCATTTC 60.299 57.895 9.78 6.84 33.67 2.17
4342 4872 1.750399 AGCGGCGGAAGATGCATTT 60.750 52.632 9.78 0.00 35.56 2.32
4343 4873 2.124570 AGCGGCGGAAGATGCATT 60.125 55.556 9.78 0.00 35.56 3.56
4344 4874 2.898840 CAGCGGCGGAAGATGCAT 60.899 61.111 9.78 0.00 35.56 3.96
4345 4875 4.081185 TCAGCGGCGGAAGATGCA 62.081 61.111 9.78 0.00 35.56 3.96
4346 4876 3.267860 CTCAGCGGCGGAAGATGC 61.268 66.667 9.78 0.00 0.00 3.91
4347 4877 3.267860 GCTCAGCGGCGGAAGATG 61.268 66.667 9.78 0.00 0.00 2.90
4348 4878 3.023949 AAGCTCAGCGGCGGAAGAT 62.024 57.895 9.78 0.00 37.29 2.40
4349 4879 3.695606 AAGCTCAGCGGCGGAAGA 61.696 61.111 9.78 0.00 37.29 2.87
4350 4880 2.835701 TACAAGCTCAGCGGCGGAAG 62.836 60.000 9.78 0.00 37.29 3.46
4351 4881 2.938086 TACAAGCTCAGCGGCGGAA 61.938 57.895 9.78 0.00 37.29 4.30
4352 4882 3.378602 TACAAGCTCAGCGGCGGA 61.379 61.111 9.78 2.23 37.29 5.54
4353 4883 3.188786 GTACAAGCTCAGCGGCGG 61.189 66.667 9.78 0.00 37.29 6.13
4354 4884 2.860690 TACGTACAAGCTCAGCGGCG 62.861 60.000 0.51 0.51 37.29 6.46
4355 4885 1.153901 TACGTACAAGCTCAGCGGC 60.154 57.895 0.00 0.00 0.00 6.53
4356 4886 0.170561 AGTACGTACAAGCTCAGCGG 59.829 55.000 26.55 0.00 0.00 5.52
4357 4887 1.260206 CAGTACGTACAAGCTCAGCG 58.740 55.000 26.55 0.99 0.00 5.18
4358 4888 1.630148 CCAGTACGTACAAGCTCAGC 58.370 55.000 26.55 0.00 0.00 4.26
4359 4889 1.816835 TCCCAGTACGTACAAGCTCAG 59.183 52.381 26.55 8.64 0.00 3.35
4360 4890 1.816835 CTCCCAGTACGTACAAGCTCA 59.183 52.381 26.55 5.38 0.00 4.26
4361 4891 2.089980 TCTCCCAGTACGTACAAGCTC 58.910 52.381 26.55 0.00 0.00 4.09
4362 4892 2.093106 CTCTCCCAGTACGTACAAGCT 58.907 52.381 26.55 3.86 0.00 3.74
4363 4893 2.089980 TCTCTCCCAGTACGTACAAGC 58.910 52.381 26.55 0.31 0.00 4.01
4364 4894 4.985538 ATTCTCTCCCAGTACGTACAAG 57.014 45.455 26.55 17.84 0.00 3.16
4365 4895 5.733620 AAATTCTCTCCCAGTACGTACAA 57.266 39.130 26.55 10.47 0.00 2.41
4366 4896 5.948162 AGTAAATTCTCTCCCAGTACGTACA 59.052 40.000 26.55 5.91 0.00 2.90
4367 4897 6.448207 AGTAAATTCTCTCCCAGTACGTAC 57.552 41.667 18.10 18.10 0.00 3.67
4368 4898 6.660521 TCAAGTAAATTCTCTCCCAGTACGTA 59.339 38.462 0.00 0.00 0.00 3.57
4369 4899 5.479375 TCAAGTAAATTCTCTCCCAGTACGT 59.521 40.000 0.00 0.00 0.00 3.57
4370 4900 5.962433 TCAAGTAAATTCTCTCCCAGTACG 58.038 41.667 0.00 0.00 0.00 3.67
4371 4901 7.171630 TCTCAAGTAAATTCTCTCCCAGTAC 57.828 40.000 0.00 0.00 0.00 2.73
4372 4902 7.579723 GCTTCTCAAGTAAATTCTCTCCCAGTA 60.580 40.741 0.00 0.00 0.00 2.74
4373 4903 6.688073 TTCTCAAGTAAATTCTCTCCCAGT 57.312 37.500 0.00 0.00 0.00 4.00
4374 4904 5.584251 GCTTCTCAAGTAAATTCTCTCCCAG 59.416 44.000 0.00 0.00 0.00 4.45
4375 4905 5.013079 TGCTTCTCAAGTAAATTCTCTCCCA 59.987 40.000 0.00 0.00 0.00 4.37
4376 4906 5.491982 TGCTTCTCAAGTAAATTCTCTCCC 58.508 41.667 0.00 0.00 0.00 4.30
4377 4907 6.402222 TCTGCTTCTCAAGTAAATTCTCTCC 58.598 40.000 0.00 0.00 0.00 3.71
4378 4908 6.534793 CCTCTGCTTCTCAAGTAAATTCTCTC 59.465 42.308 0.00 0.00 0.00 3.20
4379 4909 6.212388 TCCTCTGCTTCTCAAGTAAATTCTCT 59.788 38.462 0.00 0.00 0.00 3.10
4380 4910 6.402222 TCCTCTGCTTCTCAAGTAAATTCTC 58.598 40.000 0.00 0.00 0.00 2.87
4381 4911 6.365970 TCCTCTGCTTCTCAAGTAAATTCT 57.634 37.500 0.00 0.00 0.00 2.40
4382 4912 6.093357 CCTTCCTCTGCTTCTCAAGTAAATTC 59.907 42.308 0.00 0.00 0.00 2.17
4383 4913 5.942826 CCTTCCTCTGCTTCTCAAGTAAATT 59.057 40.000 0.00 0.00 0.00 1.82
4384 4914 5.249393 TCCTTCCTCTGCTTCTCAAGTAAAT 59.751 40.000 0.00 0.00 0.00 1.40
4385 4915 4.593206 TCCTTCCTCTGCTTCTCAAGTAAA 59.407 41.667 0.00 0.00 0.00 2.01
4386 4916 4.160329 TCCTTCCTCTGCTTCTCAAGTAA 58.840 43.478 0.00 0.00 0.00 2.24
4387 4917 3.766591 CTCCTTCCTCTGCTTCTCAAGTA 59.233 47.826 0.00 0.00 0.00 2.24
4388 4918 2.566724 CTCCTTCCTCTGCTTCTCAAGT 59.433 50.000 0.00 0.00 0.00 3.16
4389 4919 2.830923 TCTCCTTCCTCTGCTTCTCAAG 59.169 50.000 0.00 0.00 0.00 3.02
4390 4920 2.564947 GTCTCCTTCCTCTGCTTCTCAA 59.435 50.000 0.00 0.00 0.00 3.02
4391 4921 2.175202 GTCTCCTTCCTCTGCTTCTCA 58.825 52.381 0.00 0.00 0.00 3.27
4392 4922 2.175202 TGTCTCCTTCCTCTGCTTCTC 58.825 52.381 0.00 0.00 0.00 2.87
4393 4923 2.317371 TGTCTCCTTCCTCTGCTTCT 57.683 50.000 0.00 0.00 0.00 2.85
4394 4924 2.564947 TCTTGTCTCCTTCCTCTGCTTC 59.435 50.000 0.00 0.00 0.00 3.86
4395 4925 2.614259 TCTTGTCTCCTTCCTCTGCTT 58.386 47.619 0.00 0.00 0.00 3.91
4396 4926 2.317371 TCTTGTCTCCTTCCTCTGCT 57.683 50.000 0.00 0.00 0.00 4.24
4397 4927 2.419851 CCATCTTGTCTCCTTCCTCTGC 60.420 54.545 0.00 0.00 0.00 4.26
4398 4928 2.836981 ACCATCTTGTCTCCTTCCTCTG 59.163 50.000 0.00 0.00 0.00 3.35
4399 4929 2.836981 CACCATCTTGTCTCCTTCCTCT 59.163 50.000 0.00 0.00 0.00 3.69
4400 4930 2.569404 ACACCATCTTGTCTCCTTCCTC 59.431 50.000 0.00 0.00 0.00 3.71
4401 4931 2.569404 GACACCATCTTGTCTCCTTCCT 59.431 50.000 0.00 0.00 42.36 3.36
4402 4932 2.979240 GACACCATCTTGTCTCCTTCC 58.021 52.381 0.00 0.00 42.36 3.46
4409 4939 2.417933 GTGCATCAGACACCATCTTGTC 59.582 50.000 0.00 0.00 45.45 3.18
4410 4940 2.430465 GTGCATCAGACACCATCTTGT 58.570 47.619 0.00 0.00 34.41 3.16
4418 4948 2.863153 GCACGGTGCATCAGACAC 59.137 61.111 27.10 0.00 44.26 3.67
4486 5016 2.365941 GGATTAAGGAAGGAGACGGAGG 59.634 54.545 0.00 0.00 0.00 4.30
4490 5020 3.134804 ACATGGGATTAAGGAAGGAGACG 59.865 47.826 0.00 0.00 0.00 4.18
4499 5029 4.503714 ACAGTGGTACATGGGATTAAGG 57.496 45.455 0.00 0.00 44.52 2.69
4500 5030 7.993183 AGAAATACAGTGGTACATGGGATTAAG 59.007 37.037 0.00 0.00 44.52 1.85
4501 5031 7.867921 AGAAATACAGTGGTACATGGGATTAA 58.132 34.615 0.00 0.00 44.52 1.40
4502 5032 7.347222 AGAGAAATACAGTGGTACATGGGATTA 59.653 37.037 0.00 0.00 44.52 1.75
4503 5033 6.158695 AGAGAAATACAGTGGTACATGGGATT 59.841 38.462 0.00 0.00 44.52 3.01
4504 5034 5.667626 AGAGAAATACAGTGGTACATGGGAT 59.332 40.000 0.00 0.00 44.52 3.85
4505 5035 5.030147 AGAGAAATACAGTGGTACATGGGA 58.970 41.667 0.00 0.00 44.52 4.37
4506 5036 5.359194 AGAGAAATACAGTGGTACATGGG 57.641 43.478 0.00 0.00 44.52 4.00
4507 5037 5.986135 GCTAGAGAAATACAGTGGTACATGG 59.014 44.000 0.00 0.00 44.52 3.66
4508 5038 6.810911 AGCTAGAGAAATACAGTGGTACATG 58.189 40.000 0.00 0.00 44.52 3.21
4509 5039 8.580720 CATAGCTAGAGAAATACAGTGGTACAT 58.419 37.037 0.00 0.00 44.52 2.29
4510 5040 7.470147 GCATAGCTAGAGAAATACAGTGGTACA 60.470 40.741 0.00 0.00 30.94 2.90
4511 5041 6.864165 GCATAGCTAGAGAAATACAGTGGTAC 59.136 42.308 0.00 0.00 30.94 3.34
4512 5042 6.778069 AGCATAGCTAGAGAAATACAGTGGTA 59.222 38.462 0.00 0.00 36.99 3.25
4513 5043 5.600484 AGCATAGCTAGAGAAATACAGTGGT 59.400 40.000 0.00 0.00 36.99 4.16
4514 5044 5.925397 CAGCATAGCTAGAGAAATACAGTGG 59.075 44.000 0.00 0.00 36.40 4.00
4515 5045 6.420306 CACAGCATAGCTAGAGAAATACAGTG 59.580 42.308 0.00 0.00 36.40 3.66
4516 5046 6.511416 CACAGCATAGCTAGAGAAATACAGT 58.489 40.000 0.00 0.00 36.40 3.55
4517 5047 5.404968 GCACAGCATAGCTAGAGAAATACAG 59.595 44.000 0.00 0.00 36.40 2.74
4518 5048 5.163416 TGCACAGCATAGCTAGAGAAATACA 60.163 40.000 0.00 0.00 36.40 2.29
4519 5049 5.292765 TGCACAGCATAGCTAGAGAAATAC 58.707 41.667 0.00 0.00 36.40 1.89
4520 5050 5.069648 ACTGCACAGCATAGCTAGAGAAATA 59.930 40.000 0.00 0.00 38.13 1.40
4521 5051 4.141756 ACTGCACAGCATAGCTAGAGAAAT 60.142 41.667 0.00 0.00 38.13 2.17
4522 5052 3.196469 ACTGCACAGCATAGCTAGAGAAA 59.804 43.478 0.00 0.00 38.13 2.52
4523 5053 2.762887 ACTGCACAGCATAGCTAGAGAA 59.237 45.455 0.00 0.00 38.13 2.87
4524 5054 2.382882 ACTGCACAGCATAGCTAGAGA 58.617 47.619 0.00 0.00 38.13 3.10
4525 5055 2.886862 ACTGCACAGCATAGCTAGAG 57.113 50.000 0.00 0.00 38.13 2.43
4526 5056 4.944619 ATTACTGCACAGCATAGCTAGA 57.055 40.909 0.00 0.00 38.13 2.43
4527 5057 6.870439 TGATTATTACTGCACAGCATAGCTAG 59.130 38.462 0.00 0.00 38.13 3.42
4528 5058 6.758254 TGATTATTACTGCACAGCATAGCTA 58.242 36.000 0.00 0.00 38.13 3.32
4529 5059 5.614308 TGATTATTACTGCACAGCATAGCT 58.386 37.500 0.00 0.00 38.13 3.32
4530 5060 5.468072 ACTGATTATTACTGCACAGCATAGC 59.532 40.000 0.00 0.00 38.13 2.97
4531 5061 8.768957 ATACTGATTATTACTGCACAGCATAG 57.231 34.615 0.00 0.00 38.13 2.23
4532 5062 9.860898 CTATACTGATTATTACTGCACAGCATA 57.139 33.333 0.00 0.00 38.13 3.14
4533 5063 7.332926 GCTATACTGATTATTACTGCACAGCAT 59.667 37.037 0.00 0.00 38.13 3.79
4534 5064 6.646653 GCTATACTGATTATTACTGCACAGCA 59.353 38.462 0.00 0.00 36.92 4.41
4535 5065 6.870965 AGCTATACTGATTATTACTGCACAGC 59.129 38.462 0.00 0.00 0.00 4.40
4538 5068 9.522804 GGATAGCTATACTGATTATTACTGCAC 57.477 37.037 8.86 0.00 0.00 4.57
4539 5069 9.480861 AGGATAGCTATACTGATTATTACTGCA 57.519 33.333 18.13 0.00 0.00 4.41
4546 5076 8.865090 GCCACATAGGATAGCTATACTGATTAT 58.135 37.037 26.19 10.51 41.22 1.28
4547 5077 7.013369 CGCCACATAGGATAGCTATACTGATTA 59.987 40.741 26.19 8.57 41.22 1.75
4548 5078 6.183360 CGCCACATAGGATAGCTATACTGATT 60.183 42.308 26.19 9.87 41.22 2.57
4549 5079 5.300539 CGCCACATAGGATAGCTATACTGAT 59.699 44.000 26.19 13.56 41.22 2.90
4550 5080 4.640647 CGCCACATAGGATAGCTATACTGA 59.359 45.833 26.19 12.02 41.22 3.41
4551 5081 4.399618 ACGCCACATAGGATAGCTATACTG 59.600 45.833 26.19 14.93 41.22 2.74
4552 5082 4.601084 ACGCCACATAGGATAGCTATACT 58.399 43.478 22.16 22.16 41.22 2.12
4553 5083 4.985538 ACGCCACATAGGATAGCTATAC 57.014 45.455 8.00 8.00 41.22 1.47
4554 5084 4.381612 GCAACGCCACATAGGATAGCTATA 60.382 45.833 6.13 0.00 41.22 1.31
4555 5085 3.617531 GCAACGCCACATAGGATAGCTAT 60.618 47.826 5.76 5.76 41.22 2.97
4556 5086 2.288825 GCAACGCCACATAGGATAGCTA 60.289 50.000 0.00 0.00 41.22 3.32
4557 5087 1.541233 GCAACGCCACATAGGATAGCT 60.541 52.381 0.00 0.00 41.22 3.32
4558 5088 0.868406 GCAACGCCACATAGGATAGC 59.132 55.000 0.00 0.00 41.22 2.97
4559 5089 2.036475 AGAGCAACGCCACATAGGATAG 59.964 50.000 0.00 0.00 41.22 2.08
4560 5090 2.039418 AGAGCAACGCCACATAGGATA 58.961 47.619 0.00 0.00 41.22 2.59
4561 5091 0.833287 AGAGCAACGCCACATAGGAT 59.167 50.000 0.00 0.00 41.22 3.24
4562 5092 0.613260 AAGAGCAACGCCACATAGGA 59.387 50.000 0.00 0.00 41.22 2.94
4563 5093 0.729116 CAAGAGCAACGCCACATAGG 59.271 55.000 0.00 0.00 41.84 2.57
4564 5094 0.097674 GCAAGAGCAACGCCACATAG 59.902 55.000 0.00 0.00 41.58 2.23
4565 5095 0.321564 AGCAAGAGCAACGCCACATA 60.322 50.000 0.00 0.00 45.49 2.29
4566 5096 1.601759 AGCAAGAGCAACGCCACAT 60.602 52.632 0.00 0.00 45.49 3.21
4567 5097 2.203195 AGCAAGAGCAACGCCACA 60.203 55.556 0.00 0.00 45.49 4.17
4568 5098 2.253452 CAGCAAGAGCAACGCCAC 59.747 61.111 0.00 0.00 45.49 5.01
4569 5099 2.956799 TTCCAGCAAGAGCAACGCCA 62.957 55.000 0.00 0.00 45.49 5.69
4570 5100 2.260869 TTCCAGCAAGAGCAACGCC 61.261 57.895 0.00 0.00 45.49 5.68
4571 5101 1.081840 GTTCCAGCAAGAGCAACGC 60.082 57.895 0.00 0.00 45.49 4.84
4572 5102 0.236711 CAGTTCCAGCAAGAGCAACG 59.763 55.000 0.00 0.00 45.49 4.10
4573 5103 0.039708 GCAGTTCCAGCAAGAGCAAC 60.040 55.000 0.00 0.00 45.49 4.17
4574 5104 1.509644 CGCAGTTCCAGCAAGAGCAA 61.510 55.000 0.00 0.00 45.49 3.91
4575 5105 1.962822 CGCAGTTCCAGCAAGAGCA 60.963 57.895 0.00 0.00 45.49 4.26
4576 5106 2.684843 CCGCAGTTCCAGCAAGAGC 61.685 63.158 0.00 0.00 42.56 4.09
4577 5107 2.684843 GCCGCAGTTCCAGCAAGAG 61.685 63.158 0.00 0.00 0.00 2.85
4578 5108 2.669569 GCCGCAGTTCCAGCAAGA 60.670 61.111 0.00 0.00 0.00 3.02
4579 5109 3.741476 GGCCGCAGTTCCAGCAAG 61.741 66.667 0.00 0.00 0.00 4.01
4597 5127 4.899239 GATCCCCTGCCTGCGACG 62.899 72.222 0.00 0.00 0.00 5.12
4598 5128 4.554036 GGATCCCCTGCCTGCGAC 62.554 72.222 0.00 0.00 0.00 5.19
4599 5129 4.804420 AGGATCCCCTGCCTGCGA 62.804 66.667 8.55 0.00 42.42 5.10
4607 5137 2.283809 CCGTCCTCAGGATCCCCT 59.716 66.667 8.55 0.00 45.74 4.79
4608 5138 2.134933 GTCCGTCCTCAGGATCCCC 61.135 68.421 8.55 0.00 40.30 4.81
4609 5139 2.491022 CGTCCGTCCTCAGGATCCC 61.491 68.421 8.55 0.00 40.30 3.85
4610 5140 3.121019 CGTCCGTCCTCAGGATCC 58.879 66.667 2.48 2.48 40.30 3.36
4611 5141 2.413765 GCGTCCGTCCTCAGGATC 59.586 66.667 0.00 0.00 40.30 3.36
4612 5142 3.148279 GGCGTCCGTCCTCAGGAT 61.148 66.667 0.00 0.00 40.30 3.24
4632 5162 4.078516 AGTTCGGGTACGGCCAGC 62.079 66.667 2.24 0.00 41.39 4.85
4633 5163 2.125673 CAGTTCGGGTACGGCCAG 60.126 66.667 2.24 0.00 41.39 4.85
4634 5164 4.382320 GCAGTTCGGGTACGGCCA 62.382 66.667 2.24 0.00 41.39 5.36
4635 5165 4.078516 AGCAGTTCGGGTACGGCC 62.079 66.667 0.00 0.00 39.60 6.13
4636 5166 2.813908 CAGCAGTTCGGGTACGGC 60.814 66.667 0.00 0.00 41.39 5.68
4637 5167 2.813908 GCAGCAGTTCGGGTACGG 60.814 66.667 0.00 0.00 41.39 4.02
4638 5168 3.179265 CGCAGCAGTTCGGGTACG 61.179 66.667 0.00 0.00 42.74 3.67
4659 5189 2.046023 TCAAGGAGCCGTGCATGG 60.046 61.111 21.33 21.33 0.00 3.66
4660 5190 3.494378 CTCAAGGAGCCGTGCATG 58.506 61.111 0.00 0.00 0.00 4.06
4669 5199 4.880537 ATCGGCGCGCTCAAGGAG 62.881 66.667 32.29 13.23 0.00 3.69
4684 5214 4.722700 AGGGTGGTGGTGCGCATC 62.723 66.667 15.91 15.63 0.00 3.91
4685 5215 4.722700 GAGGGTGGTGGTGCGCAT 62.723 66.667 15.91 0.00 0.00 4.73
4688 5218 4.394712 GGAGAGGGTGGTGGTGCG 62.395 72.222 0.00 0.00 0.00 5.34
4689 5219 2.930562 AGGAGAGGGTGGTGGTGC 60.931 66.667 0.00 0.00 0.00 5.01
4690 5220 2.650116 CGAGGAGAGGGTGGTGGTG 61.650 68.421 0.00 0.00 0.00 4.17
4691 5221 2.283966 CGAGGAGAGGGTGGTGGT 60.284 66.667 0.00 0.00 0.00 4.16
4692 5222 3.775654 GCGAGGAGAGGGTGGTGG 61.776 72.222 0.00 0.00 0.00 4.61
4693 5223 3.775654 GGCGAGGAGAGGGTGGTG 61.776 72.222 0.00 0.00 0.00 4.17
4696 5226 3.827898 GACGGCGAGGAGAGGGTG 61.828 72.222 16.62 0.00 0.00 4.61
4701 5231 4.458829 ATGGGGACGGCGAGGAGA 62.459 66.667 16.62 0.00 0.00 3.71
4702 5232 3.917760 GATGGGGACGGCGAGGAG 61.918 72.222 16.62 0.00 0.00 3.69
4705 5235 3.917760 GAGGATGGGGACGGCGAG 61.918 72.222 16.62 0.00 0.00 5.03
4711 5241 4.176752 GTGGGCGAGGATGGGGAC 62.177 72.222 0.00 0.00 0.00 4.46
4714 5244 4.181010 CTGGTGGGCGAGGATGGG 62.181 72.222 0.00 0.00 0.00 4.00
4715 5245 4.864334 GCTGGTGGGCGAGGATGG 62.864 72.222 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.