Multiple sequence alignment - TraesCS1D01G428200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G428200 chr1D 100.000 2915 0 0 1 2915 480516074 480518988 0.000000e+00 5384.0
1 TraesCS1D01G428200 chr1D 83.333 84 12 2 2204 2286 12961315 12961397 3.120000e-10 76.8
2 TraesCS1D01G428200 chr1B 91.947 2049 48 18 705 2717 668911404 668913371 0.000000e+00 2761.0
3 TraesCS1D01G428200 chr1B 79.263 651 117 13 1255 1899 542432372 542431734 3.450000e-119 438.0
4 TraesCS1D01G428200 chr1B 96.364 55 1 1 1 54 668909276 668909330 4.000000e-14 89.8
5 TraesCS1D01G428200 chr1B 100.000 31 0 0 2713 2743 668913383 668913413 1.130000e-04 58.4
6 TraesCS1D01G428200 chr2A 92.283 1542 52 20 707 2206 182284662 182283146 0.000000e+00 2126.0
7 TraesCS1D01G428200 chr2A 90.214 327 15 9 380 697 691236362 691236680 7.520000e-111 411.0
8 TraesCS1D01G428200 chr2A 86.713 143 8 4 140 271 691236171 691236313 6.510000e-32 148.0
9 TraesCS1D01G428200 chr1A 80.335 656 113 12 1255 1905 566564324 566564968 1.570000e-132 483.0
10 TraesCS1D01G428200 chr1A 84.146 82 13 0 2205 2286 572708614 572708533 2.410000e-11 80.5
11 TraesCS1D01G428200 chr5A 79.753 647 115 11 1255 1896 553421034 553421669 3.420000e-124 455.0
12 TraesCS1D01G428200 chr5A 91.525 59 5 0 2204 2262 685742795 685742853 6.700000e-12 82.4
13 TraesCS1D01G428200 chr5B 79.444 647 117 12 1255 1896 532876805 532877440 7.410000e-121 444.0
14 TraesCS1D01G428200 chr5D 79.289 647 118 11 1255 1896 438360123 438360758 3.450000e-119 438.0
15 TraesCS1D01G428200 chr5D 77.190 662 129 17 1255 1908 507772212 507771565 1.650000e-97 366.0
16 TraesCS1D01G428200 chr5D 77.086 659 121 24 1255 1901 507835749 507835109 1.290000e-93 353.0
17 TraesCS1D01G428200 chr5D 82.143 84 15 0 2203 2286 404408471 404408388 4.030000e-09 73.1
18 TraesCS1D01G428200 chr2B 90.938 320 21 3 387 706 653916185 653915874 9.660000e-115 424.0
19 TraesCS1D01G428200 chr2B 95.726 117 3 2 140 255 653916356 653916241 1.380000e-43 187.0
20 TraesCS1D01G428200 chr6D 78.333 600 104 18 1312 1901 53774969 53774386 5.940000e-97 364.0
21 TraesCS1D01G428200 chr6B 78.239 602 100 20 1312 1901 117707061 117707643 9.930000e-95 357.0
22 TraesCS1D01G428200 chr6A 77.963 599 108 16 1312 1901 61212108 61212691 1.290000e-93 353.0
23 TraesCS1D01G428200 chr6A 76.220 656 130 20 1256 1901 61400673 61401312 1.010000e-84 324.0
24 TraesCS1D01G428200 chr6A 82.716 324 32 12 387 704 54666470 54666775 1.720000e-67 267.0
25 TraesCS1D01G428200 chr6A 90.511 137 9 3 140 272 54666277 54666413 8.300000e-41 178.0
26 TraesCS1D01G428200 chr2D 82.979 329 26 17 387 704 547612292 547611983 1.330000e-68 270.0
27 TraesCS1D01G428200 chr2D 90.511 137 9 2 140 272 547612489 547612353 8.300000e-41 178.0
28 TraesCS1D01G428200 chr2D 82.558 86 15 0 2206 2291 593593118 593593033 3.120000e-10 76.8
29 TraesCS1D01G428200 chr3B 97.872 141 1 2 2776 2915 313816837 313816698 2.900000e-60 243.0
30 TraesCS1D01G428200 chr3B 95.238 105 5 0 2371 2475 97087742 97087846 1.800000e-37 167.0
31 TraesCS1D01G428200 chr3A 91.919 99 8 0 2377 2475 69495560 69495462 3.920000e-29 139.0
32 TraesCS1D01G428200 chr3A 84.848 66 5 5 2195 2259 538850818 538850879 8.720000e-06 62.1
33 TraesCS1D01G428200 chr4A 93.103 58 2 2 2206 2262 708626545 708626601 1.860000e-12 84.2
34 TraesCS1D01G428200 chr3D 83.133 83 13 1 2205 2287 84007140 84007059 1.120000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G428200 chr1D 480516074 480518988 2914 False 5384.000000 5384 100.000000 1 2915 1 chr1D.!!$F2 2914
1 TraesCS1D01G428200 chr1B 668909276 668913413 4137 False 969.733333 2761 96.103667 1 2743 3 chr1B.!!$F1 2742
2 TraesCS1D01G428200 chr1B 542431734 542432372 638 True 438.000000 438 79.263000 1255 1899 1 chr1B.!!$R1 644
3 TraesCS1D01G428200 chr2A 182283146 182284662 1516 True 2126.000000 2126 92.283000 707 2206 1 chr2A.!!$R1 1499
4 TraesCS1D01G428200 chr2A 691236171 691236680 509 False 279.500000 411 88.463500 140 697 2 chr2A.!!$F1 557
5 TraesCS1D01G428200 chr1A 566564324 566564968 644 False 483.000000 483 80.335000 1255 1905 1 chr1A.!!$F1 650
6 TraesCS1D01G428200 chr5A 553421034 553421669 635 False 455.000000 455 79.753000 1255 1896 1 chr5A.!!$F1 641
7 TraesCS1D01G428200 chr5B 532876805 532877440 635 False 444.000000 444 79.444000 1255 1896 1 chr5B.!!$F1 641
8 TraesCS1D01G428200 chr5D 438360123 438360758 635 False 438.000000 438 79.289000 1255 1896 1 chr5D.!!$F1 641
9 TraesCS1D01G428200 chr5D 507771565 507772212 647 True 366.000000 366 77.190000 1255 1908 1 chr5D.!!$R2 653
10 TraesCS1D01G428200 chr5D 507835109 507835749 640 True 353.000000 353 77.086000 1255 1901 1 chr5D.!!$R3 646
11 TraesCS1D01G428200 chr6D 53774386 53774969 583 True 364.000000 364 78.333000 1312 1901 1 chr6D.!!$R1 589
12 TraesCS1D01G428200 chr6B 117707061 117707643 582 False 357.000000 357 78.239000 1312 1901 1 chr6B.!!$F1 589
13 TraesCS1D01G428200 chr6A 61212108 61212691 583 False 353.000000 353 77.963000 1312 1901 1 chr6A.!!$F1 589
14 TraesCS1D01G428200 chr6A 61400673 61401312 639 False 324.000000 324 76.220000 1256 1901 1 chr6A.!!$F2 645
15 TraesCS1D01G428200 chr2D 547611983 547612489 506 True 224.000000 270 86.745000 140 704 2 chr2D.!!$R2 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
301 313 0.041535 TTGCTTCCTTGGGCATGGAT 59.958 50.0 0.0 0.0 38.3 3.41 F
465 480 0.261696 ACCACCTGAAAAGCCACCTT 59.738 50.0 0.0 0.0 0.0 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1187 2964 0.456221 AGCTCTTAGCACGCGTACAT 59.544 50.0 13.44 2.89 45.56 2.29 R
2330 4136 0.036164 ATGCCGTTGTTGCTCACCTA 59.964 50.0 0.00 0.00 0.00 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 1.945776 GAAGCTCGTACGTGCACAGC 61.946 60.000 35.12 25.93 37.12 4.40
50 51 3.172575 CTCGTACGTGCACAGCCG 61.173 66.667 18.64 14.52 0.00 5.52
68 69 2.972505 CACGCTGACGGCCAGTTT 60.973 61.111 2.24 0.00 46.04 2.66
69 70 2.203153 ACGCTGACGGCCAGTTTT 60.203 55.556 2.24 0.00 46.04 2.43
70 71 1.070105 ACGCTGACGGCCAGTTTTA 59.930 52.632 2.24 0.00 46.04 1.52
71 72 0.321298 ACGCTGACGGCCAGTTTTAT 60.321 50.000 2.24 0.00 46.04 1.40
72 73 0.802494 CGCTGACGGCCAGTTTTATT 59.198 50.000 2.24 0.00 44.71 1.40
73 74 1.202031 CGCTGACGGCCAGTTTTATTC 60.202 52.381 2.24 0.00 44.71 1.75
74 75 1.810151 GCTGACGGCCAGTTTTATTCA 59.190 47.619 2.24 0.00 44.71 2.57
76 77 3.334691 CTGACGGCCAGTTTTATTCAGA 58.665 45.455 2.24 0.00 38.10 3.27
77 78 3.334691 TGACGGCCAGTTTTATTCAGAG 58.665 45.455 2.24 0.00 0.00 3.35
78 79 3.007506 TGACGGCCAGTTTTATTCAGAGA 59.992 43.478 2.24 0.00 0.00 3.10
79 80 4.000988 GACGGCCAGTTTTATTCAGAGAA 58.999 43.478 2.24 0.00 0.00 2.87
80 81 4.394729 ACGGCCAGTTTTATTCAGAGAAA 58.605 39.130 2.24 0.00 0.00 2.52
81 82 4.215613 ACGGCCAGTTTTATTCAGAGAAAC 59.784 41.667 2.24 0.00 34.37 2.78
83 84 5.642063 CGGCCAGTTTTATTCAGAGAAACTA 59.358 40.000 2.24 0.00 40.54 2.24
84 85 6.148811 CGGCCAGTTTTATTCAGAGAAACTAA 59.851 38.462 2.24 0.00 40.54 2.24
85 86 7.308348 CGGCCAGTTTTATTCAGAGAAACTAAA 60.308 37.037 2.24 0.00 40.54 1.85
87 88 9.181805 GCCAGTTTTATTCAGAGAAACTAAAAC 57.818 33.333 14.69 14.69 40.54 2.43
95 96 8.753497 ATTCAGAGAAACTAAAACCTGAAACT 57.247 30.769 0.00 0.00 41.86 2.66
96 97 7.553881 TCAGAGAAACTAAAACCTGAAACTG 57.446 36.000 0.00 0.00 0.00 3.16
97 98 7.110155 TCAGAGAAACTAAAACCTGAAACTGT 58.890 34.615 0.00 0.00 0.00 3.55
100 101 9.110502 AGAGAAACTAAAACCTGAAACTGTAAG 57.889 33.333 0.00 0.00 42.29 2.34
113 114 1.286501 CTGTAAGTGTGTGCGTGTGT 58.713 50.000 0.00 0.00 0.00 3.72
114 115 1.003108 TGTAAGTGTGTGCGTGTGTG 58.997 50.000 0.00 0.00 0.00 3.82
115 116 1.003851 GTAAGTGTGTGCGTGTGTGT 58.996 50.000 0.00 0.00 0.00 3.72
117 118 0.953471 AAGTGTGTGCGTGTGTGTGT 60.953 50.000 0.00 0.00 0.00 3.72
119 120 2.277247 GTGTGCGTGTGTGTGTGC 60.277 61.111 0.00 0.00 0.00 4.57
120 121 3.858989 TGTGCGTGTGTGTGTGCG 61.859 61.111 0.00 0.00 0.00 5.34
135 136 3.337889 GCGCGCGCAGATTATCCA 61.338 61.111 46.11 0.00 41.49 3.41
136 137 2.881266 GCGCGCGCAGATTATCCAA 61.881 57.895 46.11 0.00 41.49 3.53
137 138 1.083401 CGCGCGCAGATTATCCAAC 60.083 57.895 32.61 0.00 0.00 3.77
186 190 4.083862 GGCCCCGACAGTGAGTCC 62.084 72.222 0.00 0.00 44.66 3.85
192 196 1.248486 CCGACAGTGAGTCCTCTTCA 58.752 55.000 0.00 0.00 44.66 3.02
203 207 4.202503 TGAGTCCTCTTCATTTGCTCCTTT 60.203 41.667 0.00 0.00 0.00 3.11
204 208 4.077822 AGTCCTCTTCATTTGCTCCTTTG 58.922 43.478 0.00 0.00 0.00 2.77
206 210 4.279420 GTCCTCTTCATTTGCTCCTTTGTT 59.721 41.667 0.00 0.00 0.00 2.83
272 284 1.482954 TCCATCAGCTCACTCTCAGG 58.517 55.000 0.00 0.00 0.00 3.86
273 285 0.179078 CCATCAGCTCACTCTCAGGC 60.179 60.000 0.00 0.00 0.00 4.85
274 286 0.535797 CATCAGCTCACTCTCAGGCA 59.464 55.000 0.00 0.00 0.00 4.75
275 287 0.825410 ATCAGCTCACTCTCAGGCAG 59.175 55.000 0.00 0.00 0.00 4.85
278 290 1.448189 GCTCACTCTCAGGCAGCTG 60.448 63.158 10.11 10.11 0.00 4.24
279 291 1.448189 CTCACTCTCAGGCAGCTGC 60.448 63.158 30.88 30.88 41.14 5.25
289 301 2.260743 GCAGCTGCCTTTGCTTCC 59.739 61.111 28.76 0.00 38.92 3.46
293 305 1.183676 AGCTGCCTTTGCTTCCTTGG 61.184 55.000 0.00 0.00 37.52 3.61
298 310 0.248289 CCTTTGCTTCCTTGGGCATG 59.752 55.000 0.00 0.00 38.30 4.06
299 311 0.248289 CTTTGCTTCCTTGGGCATGG 59.752 55.000 0.00 0.00 38.30 3.66
300 312 0.178938 TTTGCTTCCTTGGGCATGGA 60.179 50.000 0.00 0.00 38.30 3.41
301 313 0.041535 TTGCTTCCTTGGGCATGGAT 59.958 50.000 0.00 0.00 38.30 3.41
302 314 0.685131 TGCTTCCTTGGGCATGGATG 60.685 55.000 0.00 0.00 35.01 3.51
310 322 3.228453 CTTGGGCATGGATGAGCTTAAT 58.772 45.455 0.00 0.00 0.00 1.40
313 325 4.802307 TGGGCATGGATGAGCTTAATTAA 58.198 39.130 0.00 0.00 0.00 1.40
314 326 4.584325 TGGGCATGGATGAGCTTAATTAAC 59.416 41.667 0.00 0.00 0.00 2.01
315 327 4.829492 GGGCATGGATGAGCTTAATTAACT 59.171 41.667 0.00 0.00 0.00 2.24
316 328 5.278660 GGGCATGGATGAGCTTAATTAACTG 60.279 44.000 0.00 0.00 0.00 3.16
317 329 5.300286 GGCATGGATGAGCTTAATTAACTGT 59.700 40.000 0.00 0.00 0.00 3.55
318 330 6.183360 GGCATGGATGAGCTTAATTAACTGTT 60.183 38.462 0.00 0.00 0.00 3.16
319 331 7.013274 GGCATGGATGAGCTTAATTAACTGTTA 59.987 37.037 0.00 0.00 0.00 2.41
320 332 8.072567 GCATGGATGAGCTTAATTAACTGTTAG 58.927 37.037 0.00 0.00 0.00 2.34
321 333 9.113838 CATGGATGAGCTTAATTAACTGTTAGT 57.886 33.333 0.00 0.00 0.00 2.24
322 334 9.686683 ATGGATGAGCTTAATTAACTGTTAGTT 57.313 29.630 12.10 12.10 41.97 2.24
323 335 8.946085 TGGATGAGCTTAATTAACTGTTAGTTG 58.054 33.333 15.86 4.34 39.11 3.16
324 336 9.162764 GGATGAGCTTAATTAACTGTTAGTTGA 57.837 33.333 15.86 8.74 39.11 3.18
326 338 8.029642 TGAGCTTAATTAACTGTTAGTTGAGC 57.970 34.615 28.91 28.91 41.55 4.26
327 339 7.659799 TGAGCTTAATTAACTGTTAGTTGAGCA 59.340 33.333 33.14 21.42 42.75 4.26
328 340 8.567285 AGCTTAATTAACTGTTAGTTGAGCAT 57.433 30.769 33.14 23.12 42.75 3.79
329 341 8.454106 AGCTTAATTAACTGTTAGTTGAGCATG 58.546 33.333 33.14 14.74 42.75 4.06
330 342 7.698130 GCTTAATTAACTGTTAGTTGAGCATGG 59.302 37.037 30.06 11.05 41.18 3.66
331 343 8.856153 TTAATTAACTGTTAGTTGAGCATGGA 57.144 30.769 15.86 0.00 39.11 3.41
332 344 7.944729 AATTAACTGTTAGTTGAGCATGGAT 57.055 32.000 7.41 0.00 39.11 3.41
333 345 6.741992 TTAACTGTTAGTTGAGCATGGATG 57.258 37.500 4.56 0.00 39.11 3.51
334 346 4.558226 ACTGTTAGTTGAGCATGGATGA 57.442 40.909 0.00 0.00 0.00 2.92
335 347 4.511527 ACTGTTAGTTGAGCATGGATGAG 58.488 43.478 0.00 0.00 0.00 2.90
336 348 3.273434 TGTTAGTTGAGCATGGATGAGC 58.727 45.455 0.00 0.00 0.00 4.26
337 349 3.054875 TGTTAGTTGAGCATGGATGAGCT 60.055 43.478 0.00 0.00 45.25 4.09
338 350 2.803030 AGTTGAGCATGGATGAGCTT 57.197 45.000 0.00 0.00 42.04 3.74
339 351 3.920231 AGTTGAGCATGGATGAGCTTA 57.080 42.857 0.00 0.00 42.04 3.09
340 352 4.226427 AGTTGAGCATGGATGAGCTTAA 57.774 40.909 0.00 0.00 42.04 1.85
341 353 4.789807 AGTTGAGCATGGATGAGCTTAAT 58.210 39.130 0.00 0.00 42.04 1.40
342 354 5.198965 AGTTGAGCATGGATGAGCTTAATT 58.801 37.500 0.00 0.00 42.04 1.40
343 355 6.359804 AGTTGAGCATGGATGAGCTTAATTA 58.640 36.000 0.00 0.00 42.04 1.40
344 356 6.830324 AGTTGAGCATGGATGAGCTTAATTAA 59.170 34.615 0.00 0.00 42.04 1.40
345 357 6.624352 TGAGCATGGATGAGCTTAATTAAC 57.376 37.500 0.00 0.00 42.04 2.01
346 358 6.359804 TGAGCATGGATGAGCTTAATTAACT 58.640 36.000 0.00 0.00 42.04 2.24
347 359 6.261603 TGAGCATGGATGAGCTTAATTAACTG 59.738 38.462 0.00 0.00 42.04 3.16
348 360 6.125029 AGCATGGATGAGCTTAATTAACTGT 58.875 36.000 0.00 0.00 38.01 3.55
349 361 6.604795 AGCATGGATGAGCTTAATTAACTGTT 59.395 34.615 0.00 0.00 38.01 3.16
350 362 6.914757 GCATGGATGAGCTTAATTAACTGTTC 59.085 38.462 0.00 0.00 0.00 3.18
351 363 7.420800 CATGGATGAGCTTAATTAACTGTTCC 58.579 38.462 0.00 6.34 0.00 3.62
352 364 6.721318 TGGATGAGCTTAATTAACTGTTCCT 58.279 36.000 0.00 4.44 0.00 3.36
353 365 7.175104 TGGATGAGCTTAATTAACTGTTCCTT 58.825 34.615 0.00 0.00 0.00 3.36
354 366 7.669722 TGGATGAGCTTAATTAACTGTTCCTTT 59.330 33.333 0.00 0.00 0.00 3.11
355 367 8.184848 GGATGAGCTTAATTAACTGTTCCTTTC 58.815 37.037 0.00 0.00 0.00 2.62
356 368 7.448748 TGAGCTTAATTAACTGTTCCTTTCC 57.551 36.000 0.00 0.00 0.00 3.13
357 369 7.001674 TGAGCTTAATTAACTGTTCCTTTCCA 58.998 34.615 0.00 0.00 0.00 3.53
358 370 7.504238 TGAGCTTAATTAACTGTTCCTTTCCAA 59.496 33.333 0.00 0.00 0.00 3.53
359 371 8.422577 AGCTTAATTAACTGTTCCTTTCCAAT 57.577 30.769 0.00 0.00 0.00 3.16
368 380 7.636150 ACTGTTCCTTTCCAATCTGATTATG 57.364 36.000 1.98 0.00 0.00 1.90
369 381 7.177878 ACTGTTCCTTTCCAATCTGATTATGT 58.822 34.615 1.98 0.00 0.00 2.29
371 383 9.177608 CTGTTCCTTTCCAATCTGATTATGTTA 57.822 33.333 1.98 0.00 0.00 2.41
372 384 9.527157 TGTTCCTTTCCAATCTGATTATGTTAA 57.473 29.630 1.98 0.00 0.00 2.01
384 396 9.851686 ATCTGATTATGTTAATTTCTACCTGCA 57.148 29.630 0.00 0.00 0.00 4.41
385 397 9.679661 TCTGATTATGTTAATTTCTACCTGCAA 57.320 29.630 0.00 0.00 0.00 4.08
464 479 1.145571 TACCACCTGAAAAGCCACCT 58.854 50.000 0.00 0.00 0.00 4.00
465 480 0.261696 ACCACCTGAAAAGCCACCTT 59.738 50.000 0.00 0.00 0.00 3.50
466 481 0.961753 CCACCTGAAAAGCCACCTTC 59.038 55.000 0.00 0.00 0.00 3.46
467 482 1.691196 CACCTGAAAAGCCACCTTCA 58.309 50.000 0.00 0.00 0.00 3.02
505 641 0.683973 CAACTCTGCTCCACTCCTGT 59.316 55.000 0.00 0.00 0.00 4.00
558 990 2.365617 CAGTCCAGTCCAGTGTTGTACT 59.634 50.000 0.00 0.00 41.36 2.73
559 991 3.572682 CAGTCCAGTCCAGTGTTGTACTA 59.427 47.826 0.00 0.00 37.60 1.82
560 992 3.573110 AGTCCAGTCCAGTGTTGTACTAC 59.427 47.826 0.05 0.05 37.60 2.73
561 993 2.555325 TCCAGTCCAGTGTTGTACTACG 59.445 50.000 3.03 0.00 37.60 3.51
562 994 2.295349 CCAGTCCAGTGTTGTACTACGT 59.705 50.000 3.03 0.00 37.60 3.57
563 995 3.503363 CCAGTCCAGTGTTGTACTACGTA 59.497 47.826 3.03 0.00 37.60 3.57
564 996 4.157289 CCAGTCCAGTGTTGTACTACGTAT 59.843 45.833 0.00 0.00 37.60 3.06
599 1551 4.794169 ACACTGCGATGTTTGTTTTATCC 58.206 39.130 0.00 0.00 0.00 2.59
700 2359 1.802960 CCTTGCAACTGCTACAGTCAG 59.197 52.381 0.00 0.00 44.62 3.51
721 2434 2.690026 GCACCAGGGGTCACTCTATAGA 60.690 54.545 1.69 1.69 31.02 1.98
786 2507 4.752514 GGAACCCATCCGACGATC 57.247 61.111 0.00 0.00 38.79 3.69
787 2508 1.069258 GGAACCCATCCGACGATCC 59.931 63.158 0.00 0.00 38.79 3.36
788 2509 1.299926 GAACCCATCCGACGATCCG 60.300 63.158 0.00 0.00 0.00 4.18
789 2510 1.731433 GAACCCATCCGACGATCCGA 61.731 60.000 0.00 0.00 0.00 4.55
1141 2897 2.159014 GGCAGAATCACCATGGTACGTA 60.159 50.000 19.28 3.84 0.00 3.57
1143 2899 3.113322 CAGAATCACCATGGTACGTACG 58.887 50.000 19.28 15.01 0.00 3.67
1185 2962 2.785258 GGAACTCGTCCGCAATGC 59.215 61.111 0.00 0.00 36.40 3.56
1186 2963 1.741770 GGAACTCGTCCGCAATGCT 60.742 57.895 2.94 0.00 36.40 3.79
1187 2964 0.459585 GGAACTCGTCCGCAATGCTA 60.460 55.000 2.94 0.00 36.40 3.49
1188 2965 1.571919 GAACTCGTCCGCAATGCTAT 58.428 50.000 2.94 0.00 0.00 2.97
1189 2966 1.258982 GAACTCGTCCGCAATGCTATG 59.741 52.381 2.94 0.00 0.00 2.23
1190 2967 0.175760 ACTCGTCCGCAATGCTATGT 59.824 50.000 2.94 0.00 0.00 2.29
1191 2968 1.407618 ACTCGTCCGCAATGCTATGTA 59.592 47.619 2.94 0.00 0.00 2.29
1192 2969 1.787155 CTCGTCCGCAATGCTATGTAC 59.213 52.381 2.94 0.00 0.00 2.90
1193 2970 0.502695 CGTCCGCAATGCTATGTACG 59.497 55.000 2.94 2.22 0.00 3.67
1194 2971 0.232303 GTCCGCAATGCTATGTACGC 59.768 55.000 2.94 0.00 0.00 4.42
1195 2972 1.201578 CCGCAATGCTATGTACGCG 59.798 57.895 3.53 3.53 42.21 6.01
1196 2973 1.487452 CCGCAATGCTATGTACGCGT 61.487 55.000 19.17 19.17 41.04 6.01
1197 2974 0.381789 CGCAATGCTATGTACGCGTG 60.382 55.000 24.59 5.42 38.03 5.34
1198 2975 0.654472 GCAATGCTATGTACGCGTGC 60.654 55.000 24.59 22.71 35.07 5.34
1222 2999 3.452474 AGAGCTAACGATTGTCTGATGC 58.548 45.455 0.00 0.00 0.00 3.91
1223 3000 3.118992 AGAGCTAACGATTGTCTGATGCA 60.119 43.478 0.00 0.00 0.00 3.96
1228 3005 2.703416 ACGATTGTCTGATGCATGTGT 58.297 42.857 2.46 0.00 0.00 3.72
1554 3331 1.820581 CGGCCTCGATTACCTTGGA 59.179 57.895 0.00 0.00 39.00 3.53
1921 3701 2.435418 CCTGGATCTTAGGCTCGCT 58.565 57.895 0.00 0.00 0.00 4.93
2049 3835 4.269183 TGGTTCACTTTCTGATGTGTGTT 58.731 39.130 9.89 0.00 35.82 3.32
2075 3867 1.452110 ATGTTGCGATGTGCTTAGCA 58.548 45.000 1.39 1.39 46.63 3.49
2170 3973 3.705051 AGTAACGACATCAGGGGTTCTA 58.295 45.455 0.00 0.00 0.00 2.10
2242 4045 4.463879 CTGGGCGCACCTCCTGAG 62.464 72.222 7.46 0.00 41.11 3.35
2262 4065 3.858040 CGTCATTCTGCGCACTAAC 57.142 52.632 5.66 0.00 0.00 2.34
2286 4089 5.460646 CATGCTGAAGGATTTGTTAACGTT 58.539 37.500 5.88 5.88 0.00 3.99
2322 4125 2.885266 TGTGTGACTTAGCGAGAAGAGT 59.115 45.455 3.98 0.00 0.00 3.24
2330 4136 4.158764 ACTTAGCGAGAAGAGTAGCATTGT 59.841 41.667 3.98 0.00 0.00 2.71
2344 4150 2.554032 AGCATTGTAGGTGAGCAACAAC 59.446 45.455 0.00 0.00 36.06 3.32
2359 4165 3.911964 GCAACAACGGCATGTTAGTAAAG 59.088 43.478 5.47 0.00 41.44 1.85
2367 4173 3.009723 GCATGTTAGTAAAGCTGCAGGA 58.990 45.455 17.12 0.00 0.00 3.86
2383 4189 5.022282 TGCAGGATAATGAGTCGATTTCA 57.978 39.130 5.24 5.24 0.00 2.69
2395 4201 5.301805 TGAGTCGATTTCAGCATGGAGTATA 59.698 40.000 0.00 0.00 36.16 1.47
2475 4281 7.392953 TGCTCAACCAAATGACATCTATGTTAA 59.607 33.333 0.00 0.00 41.95 2.01
2482 4288 8.906867 CCAAATGACATCTATGTTAAAGGACAT 58.093 33.333 0.00 0.00 41.95 3.06
2560 4366 8.680039 TTAAAAGTCGTCCCTTTATTCAGAAA 57.320 30.769 0.00 0.00 33.62 2.52
2570 4376 5.091431 CCTTTATTCAGAAAGCTCGCAAAG 58.909 41.667 0.00 0.00 35.47 2.77
2619 4425 2.382882 TGTGCAACATCCAAGTTTCCA 58.617 42.857 0.00 0.00 45.67 3.53
2688 4494 7.961326 ATATGTTTCACTTGCTCCCTAAAAT 57.039 32.000 0.00 0.00 0.00 1.82
2689 4495 6.670695 ATGTTTCACTTGCTCCCTAAAATT 57.329 33.333 0.00 0.00 0.00 1.82
2743 4565 4.021456 TCAAGCAGTTCTAGTCCGATTTGA 60.021 41.667 0.00 0.00 0.00 2.69
2744 4566 4.537135 AGCAGTTCTAGTCCGATTTGAA 57.463 40.909 0.00 0.00 0.00 2.69
2745 4567 4.499183 AGCAGTTCTAGTCCGATTTGAAG 58.501 43.478 0.00 0.00 0.00 3.02
2746 4568 3.062774 GCAGTTCTAGTCCGATTTGAAGC 59.937 47.826 0.00 0.00 0.00 3.86
2747 4569 3.619038 CAGTTCTAGTCCGATTTGAAGCC 59.381 47.826 0.00 0.00 0.00 4.35
2748 4570 3.260884 AGTTCTAGTCCGATTTGAAGCCA 59.739 43.478 0.00 0.00 0.00 4.75
2749 4571 3.526931 TCTAGTCCGATTTGAAGCCAG 57.473 47.619 0.00 0.00 0.00 4.85
2750 4572 2.168521 TCTAGTCCGATTTGAAGCCAGG 59.831 50.000 0.00 0.00 0.00 4.45
2751 4573 0.035056 AGTCCGATTTGAAGCCAGGG 60.035 55.000 0.00 0.00 0.00 4.45
2752 4574 0.322546 GTCCGATTTGAAGCCAGGGT 60.323 55.000 0.00 0.00 0.00 4.34
2753 4575 0.322456 TCCGATTTGAAGCCAGGGTG 60.322 55.000 0.00 0.00 0.00 4.61
2754 4576 0.609131 CCGATTTGAAGCCAGGGTGT 60.609 55.000 0.00 0.00 0.00 4.16
2755 4577 1.247567 CGATTTGAAGCCAGGGTGTT 58.752 50.000 0.00 0.00 0.00 3.32
2756 4578 1.613437 CGATTTGAAGCCAGGGTGTTT 59.387 47.619 0.00 0.00 0.00 2.83
2757 4579 2.351738 CGATTTGAAGCCAGGGTGTTTC 60.352 50.000 0.00 0.00 0.00 2.78
2758 4580 2.452600 TTTGAAGCCAGGGTGTTTCT 57.547 45.000 0.00 0.00 0.00 2.52
2759 4581 1.691196 TTGAAGCCAGGGTGTTTCTG 58.309 50.000 0.00 0.00 0.00 3.02
2763 4585 2.520458 CCAGGGTGTTTCTGGCCA 59.480 61.111 4.71 4.71 44.29 5.36
2764 4586 1.152567 CCAGGGTGTTTCTGGCCAA 60.153 57.895 7.01 0.00 44.29 4.52
2765 4587 1.181098 CCAGGGTGTTTCTGGCCAAG 61.181 60.000 7.01 0.66 44.29 3.61
2766 4588 1.531602 AGGGTGTTTCTGGCCAAGC 60.532 57.895 7.01 0.00 0.00 4.01
2767 4589 1.832167 GGGTGTTTCTGGCCAAGCA 60.832 57.895 7.01 0.00 0.00 3.91
2768 4590 1.662044 GGTGTTTCTGGCCAAGCAG 59.338 57.895 7.01 0.00 0.00 4.24
2769 4591 1.109323 GGTGTTTCTGGCCAAGCAGT 61.109 55.000 7.01 0.00 0.00 4.40
2770 4592 0.746659 GTGTTTCTGGCCAAGCAGTT 59.253 50.000 7.01 0.00 0.00 3.16
2771 4593 1.032014 TGTTTCTGGCCAAGCAGTTC 58.968 50.000 7.01 0.00 0.00 3.01
2772 4594 1.322442 GTTTCTGGCCAAGCAGTTCT 58.678 50.000 7.01 0.00 0.00 3.01
2773 4595 2.158682 TGTTTCTGGCCAAGCAGTTCTA 60.159 45.455 7.01 0.00 0.00 2.10
2774 4596 2.479566 TTCTGGCCAAGCAGTTCTAG 57.520 50.000 7.01 0.00 0.00 2.43
2775 4597 1.352083 TCTGGCCAAGCAGTTCTAGT 58.648 50.000 7.01 0.00 0.00 2.57
2776 4598 1.276421 TCTGGCCAAGCAGTTCTAGTC 59.724 52.381 7.01 0.00 0.00 2.59
2777 4599 1.277557 CTGGCCAAGCAGTTCTAGTCT 59.722 52.381 7.01 0.00 0.00 3.24
2778 4600 1.699634 TGGCCAAGCAGTTCTAGTCTT 59.300 47.619 0.61 0.00 0.00 3.01
2779 4601 2.289694 TGGCCAAGCAGTTCTAGTCTTC 60.290 50.000 0.61 0.00 0.00 2.87
2780 4602 1.996191 GCCAAGCAGTTCTAGTCTTCG 59.004 52.381 0.00 0.00 0.00 3.79
2781 4603 2.352814 GCCAAGCAGTTCTAGTCTTCGA 60.353 50.000 0.00 0.00 0.00 3.71
2782 4604 3.246619 CCAAGCAGTTCTAGTCTTCGAC 58.753 50.000 0.00 0.00 0.00 4.20
2783 4605 2.904011 AGCAGTTCTAGTCTTCGACG 57.096 50.000 0.00 0.00 37.67 5.12
2784 4606 1.135632 AGCAGTTCTAGTCTTCGACGC 60.136 52.381 0.00 0.00 37.67 5.19
2785 4607 1.897641 CAGTTCTAGTCTTCGACGCC 58.102 55.000 0.00 0.00 37.67 5.68
2786 4608 1.199327 CAGTTCTAGTCTTCGACGCCA 59.801 52.381 0.00 0.00 37.67 5.69
2787 4609 2.093106 AGTTCTAGTCTTCGACGCCAT 58.907 47.619 0.00 0.00 37.67 4.40
2788 4610 2.492484 AGTTCTAGTCTTCGACGCCATT 59.508 45.455 0.00 0.00 37.67 3.16
2789 4611 2.846039 TCTAGTCTTCGACGCCATTC 57.154 50.000 0.00 0.00 37.67 2.67
2790 4612 1.063616 TCTAGTCTTCGACGCCATTCG 59.936 52.381 0.00 0.00 45.38 3.34
2791 4613 0.524816 TAGTCTTCGACGCCATTCGC 60.525 55.000 0.00 0.00 43.23 4.70
2792 4614 2.508439 TCTTCGACGCCATTCGCC 60.508 61.111 0.00 0.00 43.23 5.54
2793 4615 2.813474 CTTCGACGCCATTCGCCA 60.813 61.111 0.00 0.00 43.23 5.69
2794 4616 2.125310 TTCGACGCCATTCGCCAT 60.125 55.556 0.00 0.00 43.23 4.40
2795 4617 2.094126 CTTCGACGCCATTCGCCATC 62.094 60.000 0.00 0.00 43.23 3.51
2796 4618 3.640000 CGACGCCATTCGCCATCC 61.640 66.667 0.00 0.00 43.23 3.51
2797 4619 3.279875 GACGCCATTCGCCATCCC 61.280 66.667 0.00 0.00 43.23 3.85
2798 4620 4.108299 ACGCCATTCGCCATCCCA 62.108 61.111 0.00 0.00 43.23 4.37
2799 4621 3.282157 CGCCATTCGCCATCCCAG 61.282 66.667 0.00 0.00 0.00 4.45
2800 4622 2.124151 GCCATTCGCCATCCCAGT 60.124 61.111 0.00 0.00 0.00 4.00
2801 4623 1.754234 GCCATTCGCCATCCCAGTT 60.754 57.895 0.00 0.00 0.00 3.16
2802 4624 1.728490 GCCATTCGCCATCCCAGTTC 61.728 60.000 0.00 0.00 0.00 3.01
2803 4625 1.103398 CCATTCGCCATCCCAGTTCC 61.103 60.000 0.00 0.00 0.00 3.62
2804 4626 1.153168 ATTCGCCATCCCAGTTCCG 60.153 57.895 0.00 0.00 0.00 4.30
2805 4627 1.910580 ATTCGCCATCCCAGTTCCGT 61.911 55.000 0.00 0.00 0.00 4.69
2806 4628 2.796483 TTCGCCATCCCAGTTCCGTG 62.796 60.000 0.00 0.00 0.00 4.94
2807 4629 2.668632 GCCATCCCAGTTCCGTGA 59.331 61.111 0.00 0.00 0.00 4.35
2808 4630 1.450312 GCCATCCCAGTTCCGTGAG 60.450 63.158 0.00 0.00 0.00 3.51
2809 4631 1.450312 CCATCCCAGTTCCGTGAGC 60.450 63.158 0.00 0.00 0.00 4.26
2810 4632 1.599047 CATCCCAGTTCCGTGAGCT 59.401 57.895 0.00 0.00 0.00 4.09
2811 4633 0.036010 CATCCCAGTTCCGTGAGCTT 60.036 55.000 0.00 0.00 0.00 3.74
2812 4634 0.250513 ATCCCAGTTCCGTGAGCTTC 59.749 55.000 0.00 0.00 0.00 3.86
2813 4635 0.832135 TCCCAGTTCCGTGAGCTTCT 60.832 55.000 0.00 0.00 0.00 2.85
2814 4636 0.390472 CCCAGTTCCGTGAGCTTCTC 60.390 60.000 0.00 0.00 0.00 2.87
2815 4637 0.390472 CCAGTTCCGTGAGCTTCTCC 60.390 60.000 0.00 0.00 0.00 3.71
2816 4638 0.605589 CAGTTCCGTGAGCTTCTCCT 59.394 55.000 0.00 0.00 0.00 3.69
2817 4639 0.605589 AGTTCCGTGAGCTTCTCCTG 59.394 55.000 0.00 0.00 0.00 3.86
2818 4640 0.603569 GTTCCGTGAGCTTCTCCTGA 59.396 55.000 0.00 0.00 0.00 3.86
2819 4641 0.891373 TTCCGTGAGCTTCTCCTGAG 59.109 55.000 0.00 0.00 0.00 3.35
2820 4642 0.967887 TCCGTGAGCTTCTCCTGAGG 60.968 60.000 0.00 0.00 0.00 3.86
2821 4643 0.967887 CCGTGAGCTTCTCCTGAGGA 60.968 60.000 0.00 0.00 0.00 3.71
2822 4644 0.891373 CGTGAGCTTCTCCTGAGGAA 59.109 55.000 1.41 0.00 0.00 3.36
2823 4645 1.273606 CGTGAGCTTCTCCTGAGGAAA 59.726 52.381 1.41 0.00 0.00 3.13
2824 4646 2.673610 CGTGAGCTTCTCCTGAGGAAAG 60.674 54.545 1.41 10.36 0.00 2.62
2825 4647 1.277557 TGAGCTTCTCCTGAGGAAAGC 59.722 52.381 26.68 26.68 41.49 3.51
2826 4648 0.248843 AGCTTCTCCTGAGGAAAGCG 59.751 55.000 27.07 9.95 43.54 4.68
2827 4649 0.247736 GCTTCTCCTGAGGAAAGCGA 59.752 55.000 22.95 8.03 36.73 4.93
2828 4650 1.738700 GCTTCTCCTGAGGAAAGCGAG 60.739 57.143 22.95 10.55 36.73 5.03
2829 4651 0.898320 TTCTCCTGAGGAAAGCGAGG 59.102 55.000 1.41 0.00 0.00 4.63
2830 4652 0.972983 TCTCCTGAGGAAAGCGAGGG 60.973 60.000 1.41 0.00 0.00 4.30
2831 4653 1.965754 CTCCTGAGGAAAGCGAGGGG 61.966 65.000 1.41 0.00 0.00 4.79
2832 4654 2.124942 CTGAGGAAAGCGAGGGGC 60.125 66.667 0.00 0.00 44.05 5.80
2843 4665 4.344865 GAGGGGCGGGTGCTTCAA 62.345 66.667 0.00 0.00 42.25 2.69
2844 4666 4.351054 AGGGGCGGGTGCTTCAAG 62.351 66.667 0.00 0.00 42.25 3.02
2845 4667 4.660938 GGGGCGGGTGCTTCAAGT 62.661 66.667 0.00 0.00 42.25 3.16
2846 4668 3.365265 GGGCGGGTGCTTCAAGTG 61.365 66.667 0.00 0.00 42.25 3.16
2847 4669 2.594592 GGCGGGTGCTTCAAGTGT 60.595 61.111 0.00 0.00 42.25 3.55
2848 4670 2.193536 GGCGGGTGCTTCAAGTGTT 61.194 57.895 0.00 0.00 42.25 3.32
2849 4671 1.733526 GCGGGTGCTTCAAGTGTTT 59.266 52.632 0.00 0.00 38.39 2.83
2850 4672 0.317854 GCGGGTGCTTCAAGTGTTTC 60.318 55.000 0.00 0.00 38.39 2.78
2851 4673 0.041312 CGGGTGCTTCAAGTGTTTCG 60.041 55.000 0.00 0.00 0.00 3.46
2852 4674 1.305201 GGGTGCTTCAAGTGTTTCGA 58.695 50.000 0.00 0.00 0.00 3.71
2853 4675 1.264288 GGGTGCTTCAAGTGTTTCGAG 59.736 52.381 0.00 0.00 0.00 4.04
2854 4676 1.334149 GGTGCTTCAAGTGTTTCGAGC 60.334 52.381 0.00 0.00 0.00 5.03
2855 4677 0.944386 TGCTTCAAGTGTTTCGAGCC 59.056 50.000 0.00 0.00 0.00 4.70
2856 4678 0.110644 GCTTCAAGTGTTTCGAGCCG 60.111 55.000 0.00 0.00 0.00 5.52
2857 4679 0.512952 CTTCAAGTGTTTCGAGCCGG 59.487 55.000 0.00 0.00 0.00 6.13
2858 4680 0.882927 TTCAAGTGTTTCGAGCCGGG 60.883 55.000 2.18 0.00 0.00 5.73
2859 4681 2.032071 AAGTGTTTCGAGCCGGGG 59.968 61.111 2.18 0.00 0.00 5.73
2860 4682 4.699522 AGTGTTTCGAGCCGGGGC 62.700 66.667 2.18 0.18 42.33 5.80
2862 4684 4.028490 TGTTTCGAGCCGGGGCAT 62.028 61.111 12.97 0.00 44.88 4.40
2863 4685 3.202706 GTTTCGAGCCGGGGCATC 61.203 66.667 12.97 5.85 44.88 3.91
2864 4686 4.830765 TTTCGAGCCGGGGCATCG 62.831 66.667 18.92 18.92 44.88 3.84
2875 4697 4.615815 GGCATCGCATCGCCTCCT 62.616 66.667 0.16 0.00 45.29 3.69
2876 4698 3.344215 GCATCGCATCGCCTCCTG 61.344 66.667 0.00 0.00 0.00 3.86
2877 4699 3.344215 CATCGCATCGCCTCCTGC 61.344 66.667 0.00 0.00 35.02 4.85
2878 4700 3.853487 ATCGCATCGCCTCCTGCA 61.853 61.111 0.00 0.00 41.33 4.41
2879 4701 3.390183 ATCGCATCGCCTCCTGCAA 62.390 57.895 0.00 0.00 41.33 4.08
2880 4702 3.570638 CGCATCGCCTCCTGCAAG 61.571 66.667 0.00 0.00 41.33 4.01
2881 4703 2.124983 GCATCGCCTCCTGCAAGA 60.125 61.111 0.00 0.00 41.33 3.02
2882 4704 1.746615 GCATCGCCTCCTGCAAGAA 60.747 57.895 0.00 0.00 41.33 2.52
2883 4705 1.099879 GCATCGCCTCCTGCAAGAAT 61.100 55.000 0.00 0.00 41.33 2.40
2884 4706 0.942962 CATCGCCTCCTGCAAGAATC 59.057 55.000 0.00 0.00 41.33 2.52
2885 4707 0.835941 ATCGCCTCCTGCAAGAATCT 59.164 50.000 0.00 0.00 41.33 2.40
2886 4708 0.615331 TCGCCTCCTGCAAGAATCTT 59.385 50.000 0.00 0.00 41.33 2.40
2887 4709 1.012841 CGCCTCCTGCAAGAATCTTC 58.987 55.000 0.00 0.00 41.33 2.87
2888 4710 1.387539 GCCTCCTGCAAGAATCTTCC 58.612 55.000 0.00 0.00 40.77 3.46
2889 4711 2.021208 GCCTCCTGCAAGAATCTTCCC 61.021 57.143 0.00 0.00 40.77 3.97
2890 4712 1.409381 CCTCCTGCAAGAATCTTCCCC 60.409 57.143 0.00 0.00 34.07 4.81
2891 4713 0.253044 TCCTGCAAGAATCTTCCCCG 59.747 55.000 0.00 0.00 34.07 5.73
2892 4714 0.749454 CCTGCAAGAATCTTCCCCGG 60.749 60.000 0.00 0.00 34.07 5.73
2893 4715 0.035056 CTGCAAGAATCTTCCCCGGT 60.035 55.000 0.00 0.00 34.07 5.28
2894 4716 0.322456 TGCAAGAATCTTCCCCGGTG 60.322 55.000 0.00 0.00 0.00 4.94
2895 4717 1.657751 GCAAGAATCTTCCCCGGTGC 61.658 60.000 0.00 0.00 0.00 5.01
2896 4718 1.032114 CAAGAATCTTCCCCGGTGCC 61.032 60.000 0.00 0.00 0.00 5.01
2897 4719 1.208165 AAGAATCTTCCCCGGTGCCT 61.208 55.000 0.00 0.00 0.00 4.75
2898 4720 1.153147 GAATCTTCCCCGGTGCCTC 60.153 63.158 0.00 0.00 0.00 4.70
2899 4721 1.616628 AATCTTCCCCGGTGCCTCT 60.617 57.895 0.00 0.00 0.00 3.69
2900 4722 1.208165 AATCTTCCCCGGTGCCTCTT 61.208 55.000 0.00 0.00 0.00 2.85
2901 4723 1.915078 ATCTTCCCCGGTGCCTCTTG 61.915 60.000 0.00 0.00 0.00 3.02
2902 4724 2.852075 TTCCCCGGTGCCTCTTGT 60.852 61.111 0.00 0.00 0.00 3.16
2903 4725 3.190738 TTCCCCGGTGCCTCTTGTG 62.191 63.158 0.00 0.00 0.00 3.33
2907 4729 4.988598 CGGTGCCTCTTGTGCGGT 62.989 66.667 0.00 0.00 0.00 5.68
2908 4730 3.357079 GGTGCCTCTTGTGCGGTG 61.357 66.667 0.00 0.00 0.00 4.94
2909 4731 4.030452 GTGCCTCTTGTGCGGTGC 62.030 66.667 0.00 0.00 0.00 5.01
2910 4732 4.254709 TGCCTCTTGTGCGGTGCT 62.255 61.111 0.00 0.00 0.00 4.40
2911 4733 3.730761 GCCTCTTGTGCGGTGCTG 61.731 66.667 0.00 0.00 0.00 4.41
2912 4734 2.031012 CCTCTTGTGCGGTGCTGA 59.969 61.111 0.00 0.00 0.00 4.26
2913 4735 2.031516 CCTCTTGTGCGGTGCTGAG 61.032 63.158 0.00 0.00 0.00 3.35
2914 4736 2.031012 TCTTGTGCGGTGCTGAGG 59.969 61.111 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 3.007506 TCTCTGAATAAAACTGGCCGTCA 59.992 43.478 0.00 0.00 0.00 4.35
57 58 3.596214 TCTCTGAATAAAACTGGCCGTC 58.404 45.455 0.00 0.00 0.00 4.79
59 60 4.455877 AGTTTCTCTGAATAAAACTGGCCG 59.544 41.667 0.00 0.00 40.67 6.13
60 61 5.966742 AGTTTCTCTGAATAAAACTGGCC 57.033 39.130 0.00 0.00 40.67 5.36
61 62 9.181805 GTTTTAGTTTCTCTGAATAAAACTGGC 57.818 33.333 16.51 0.00 41.83 4.85
69 70 9.847224 AGTTTCAGGTTTTAGTTTCTCTGAATA 57.153 29.630 0.00 0.00 39.80 1.75
70 71 8.624776 CAGTTTCAGGTTTTAGTTTCTCTGAAT 58.375 33.333 0.00 0.00 39.80 2.57
71 72 7.610305 ACAGTTTCAGGTTTTAGTTTCTCTGAA 59.390 33.333 0.00 0.00 38.82 3.02
72 73 7.110155 ACAGTTTCAGGTTTTAGTTTCTCTGA 58.890 34.615 0.00 0.00 0.00 3.27
73 74 7.321745 ACAGTTTCAGGTTTTAGTTTCTCTG 57.678 36.000 0.00 0.00 0.00 3.35
74 75 9.110502 CTTACAGTTTCAGGTTTTAGTTTCTCT 57.889 33.333 0.00 0.00 0.00 3.10
76 77 8.674607 CACTTACAGTTTCAGGTTTTAGTTTCT 58.325 33.333 0.00 0.00 0.00 2.52
77 78 8.456471 ACACTTACAGTTTCAGGTTTTAGTTTC 58.544 33.333 0.00 0.00 0.00 2.78
78 79 8.241367 CACACTTACAGTTTCAGGTTTTAGTTT 58.759 33.333 0.00 0.00 0.00 2.66
79 80 7.392393 ACACACTTACAGTTTCAGGTTTTAGTT 59.608 33.333 0.00 0.00 0.00 2.24
80 81 6.882678 ACACACTTACAGTTTCAGGTTTTAGT 59.117 34.615 0.00 0.00 0.00 2.24
81 82 7.186804 CACACACTTACAGTTTCAGGTTTTAG 58.813 38.462 0.00 0.00 0.00 1.85
83 84 5.621329 GCACACACTTACAGTTTCAGGTTTT 60.621 40.000 0.00 0.00 0.00 2.43
84 85 4.142469 GCACACACTTACAGTTTCAGGTTT 60.142 41.667 0.00 0.00 0.00 3.27
85 86 3.377172 GCACACACTTACAGTTTCAGGTT 59.623 43.478 0.00 0.00 0.00 3.50
87 88 2.032894 CGCACACACTTACAGTTTCAGG 60.033 50.000 0.00 0.00 0.00 3.86
90 91 2.350498 ACACGCACACACTTACAGTTTC 59.650 45.455 0.00 0.00 0.00 2.78
92 93 1.663643 CACACGCACACACTTACAGTT 59.336 47.619 0.00 0.00 0.00 3.16
93 94 1.286501 CACACGCACACACTTACAGT 58.713 50.000 0.00 0.00 0.00 3.55
94 95 1.005032 CACACACGCACACACTTACAG 60.005 52.381 0.00 0.00 0.00 2.74
95 96 1.003108 CACACACGCACACACTTACA 58.997 50.000 0.00 0.00 0.00 2.41
96 97 1.003851 ACACACACGCACACACTTAC 58.996 50.000 0.00 0.00 0.00 2.34
97 98 1.003108 CACACACACGCACACACTTA 58.997 50.000 0.00 0.00 0.00 2.24
100 101 1.225991 CACACACACACGCACACAC 60.226 57.895 0.00 0.00 0.00 3.82
102 103 2.277247 GCACACACACACGCACAC 60.277 61.111 0.00 0.00 0.00 3.82
103 104 3.858989 CGCACACACACACGCACA 61.859 61.111 0.00 0.00 0.00 4.57
119 120 1.083401 GTTGGATAATCTGCGCGCG 60.083 57.895 28.44 28.44 0.00 6.86
120 121 0.316196 GTGTTGGATAATCTGCGCGC 60.316 55.000 27.26 27.26 0.00 6.86
121 122 0.043053 CGTGTTGGATAATCTGCGCG 60.043 55.000 0.00 0.00 0.00 6.86
122 123 0.316196 GCGTGTTGGATAATCTGCGC 60.316 55.000 0.00 0.00 36.97 6.09
186 190 4.321527 GGGAACAAAGGAGCAAATGAAGAG 60.322 45.833 0.00 0.00 0.00 2.85
192 196 2.250924 CAGGGGAACAAAGGAGCAAAT 58.749 47.619 0.00 0.00 0.00 2.32
203 207 2.741092 GTGACGAGCAGGGGAACA 59.259 61.111 0.00 0.00 0.00 3.18
204 208 2.432628 CGTGACGAGCAGGGGAAC 60.433 66.667 0.00 0.00 0.00 3.62
254 266 0.179078 GCCTGAGAGTGAGCTGATGG 60.179 60.000 0.00 0.00 0.00 3.51
272 284 1.813728 AAGGAAGCAAAGGCAGCTGC 61.814 55.000 30.88 30.88 42.53 5.25
273 285 0.038526 CAAGGAAGCAAAGGCAGCTG 60.039 55.000 10.11 10.11 42.53 4.24
274 286 1.183676 CCAAGGAAGCAAAGGCAGCT 61.184 55.000 0.00 0.00 45.97 4.24
275 287 1.291272 CCAAGGAAGCAAAGGCAGC 59.709 57.895 0.00 0.00 44.61 5.25
278 290 1.547472 ATGCCCAAGGAAGCAAAGGC 61.547 55.000 0.00 0.00 43.36 4.35
279 291 0.248289 CATGCCCAAGGAAGCAAAGG 59.752 55.000 0.00 0.00 43.36 3.11
280 292 0.248289 CCATGCCCAAGGAAGCAAAG 59.752 55.000 0.00 0.00 43.36 2.77
289 301 2.353357 TAAGCTCATCCATGCCCAAG 57.647 50.000 0.00 0.00 0.00 3.61
293 305 5.300286 ACAGTTAATTAAGCTCATCCATGCC 59.700 40.000 0.00 0.00 0.00 4.40
298 310 9.162764 TCAACTAACAGTTAATTAAGCTCATCC 57.837 33.333 0.00 0.00 36.03 3.51
300 312 8.669243 GCTCAACTAACAGTTAATTAAGCTCAT 58.331 33.333 2.84 0.00 36.03 2.90
301 313 7.659799 TGCTCAACTAACAGTTAATTAAGCTCA 59.340 33.333 10.33 0.00 36.03 4.26
302 314 8.029642 TGCTCAACTAACAGTTAATTAAGCTC 57.970 34.615 10.33 0.00 36.03 4.09
310 322 6.472016 TCATCCATGCTCAACTAACAGTTAA 58.528 36.000 0.00 0.00 36.03 2.01
313 325 4.511527 CTCATCCATGCTCAACTAACAGT 58.488 43.478 0.00 0.00 0.00 3.55
314 326 3.311871 GCTCATCCATGCTCAACTAACAG 59.688 47.826 0.00 0.00 0.00 3.16
315 327 3.054875 AGCTCATCCATGCTCAACTAACA 60.055 43.478 0.00 0.00 33.90 2.41
316 328 3.539604 AGCTCATCCATGCTCAACTAAC 58.460 45.455 0.00 0.00 33.90 2.34
317 329 3.920231 AGCTCATCCATGCTCAACTAA 57.080 42.857 0.00 0.00 33.90 2.24
318 330 3.920231 AAGCTCATCCATGCTCAACTA 57.080 42.857 0.00 0.00 38.75 2.24
319 331 2.803030 AAGCTCATCCATGCTCAACT 57.197 45.000 0.00 0.00 38.75 3.16
320 332 5.511234 AATTAAGCTCATCCATGCTCAAC 57.489 39.130 0.00 0.00 38.75 3.18
321 333 6.830324 AGTTAATTAAGCTCATCCATGCTCAA 59.170 34.615 0.00 0.00 38.75 3.02
322 334 6.261603 CAGTTAATTAAGCTCATCCATGCTCA 59.738 38.462 0.00 0.00 38.75 4.26
323 335 6.261826 ACAGTTAATTAAGCTCATCCATGCTC 59.738 38.462 0.00 0.00 38.75 4.26
324 336 6.125029 ACAGTTAATTAAGCTCATCCATGCT 58.875 36.000 0.00 0.00 41.82 3.79
325 337 6.382869 ACAGTTAATTAAGCTCATCCATGC 57.617 37.500 0.00 0.00 0.00 4.06
326 338 7.284034 AGGAACAGTTAATTAAGCTCATCCATG 59.716 37.037 18.29 0.00 0.00 3.66
327 339 7.349598 AGGAACAGTTAATTAAGCTCATCCAT 58.650 34.615 18.29 9.57 0.00 3.41
328 340 6.721318 AGGAACAGTTAATTAAGCTCATCCA 58.279 36.000 18.29 0.00 0.00 3.41
329 341 7.631717 AAGGAACAGTTAATTAAGCTCATCC 57.368 36.000 0.00 8.50 0.00 3.51
330 342 8.184848 GGAAAGGAACAGTTAATTAAGCTCATC 58.815 37.037 0.00 1.11 0.00 2.92
331 343 7.669722 TGGAAAGGAACAGTTAATTAAGCTCAT 59.330 33.333 0.00 0.00 0.00 2.90
332 344 7.001674 TGGAAAGGAACAGTTAATTAAGCTCA 58.998 34.615 0.00 0.00 0.00 4.26
333 345 7.448748 TGGAAAGGAACAGTTAATTAAGCTC 57.551 36.000 0.00 0.00 0.00 4.09
334 346 7.833285 TTGGAAAGGAACAGTTAATTAAGCT 57.167 32.000 0.00 0.00 0.00 3.74
335 347 8.523658 AGATTGGAAAGGAACAGTTAATTAAGC 58.476 33.333 0.00 0.00 0.00 3.09
336 348 9.846248 CAGATTGGAAAGGAACAGTTAATTAAG 57.154 33.333 0.00 0.00 0.00 1.85
337 349 9.581289 TCAGATTGGAAAGGAACAGTTAATTAA 57.419 29.630 0.00 0.00 0.00 1.40
338 350 9.753674 ATCAGATTGGAAAGGAACAGTTAATTA 57.246 29.630 0.00 0.00 0.00 1.40
339 351 8.655935 ATCAGATTGGAAAGGAACAGTTAATT 57.344 30.769 0.00 0.00 0.00 1.40
340 352 8.655935 AATCAGATTGGAAAGGAACAGTTAAT 57.344 30.769 0.00 0.00 0.00 1.40
341 353 9.753674 ATAATCAGATTGGAAAGGAACAGTTAA 57.246 29.630 5.85 0.00 0.00 2.01
342 354 9.177608 CATAATCAGATTGGAAAGGAACAGTTA 57.822 33.333 5.85 0.00 0.00 2.24
343 355 7.671398 ACATAATCAGATTGGAAAGGAACAGTT 59.329 33.333 5.85 0.00 0.00 3.16
344 356 7.177878 ACATAATCAGATTGGAAAGGAACAGT 58.822 34.615 5.85 0.00 0.00 3.55
345 357 7.636150 ACATAATCAGATTGGAAAGGAACAG 57.364 36.000 5.85 0.00 0.00 3.16
346 358 9.527157 TTAACATAATCAGATTGGAAAGGAACA 57.473 29.630 5.85 0.00 0.00 3.18
358 370 9.851686 TGCAGGTAGAAATTAACATAATCAGAT 57.148 29.630 0.00 0.00 0.00 2.90
359 371 9.679661 TTGCAGGTAGAAATTAACATAATCAGA 57.320 29.630 0.00 0.00 0.00 3.27
368 380 6.966021 TCTGTTGTTGCAGGTAGAAATTAAC 58.034 36.000 0.00 0.00 37.12 2.01
369 381 6.206634 CCTCTGTTGTTGCAGGTAGAAATTAA 59.793 38.462 0.00 0.00 37.12 1.40
371 383 4.520492 CCTCTGTTGTTGCAGGTAGAAATT 59.480 41.667 0.00 0.00 37.12 1.82
372 384 4.074970 CCTCTGTTGTTGCAGGTAGAAAT 58.925 43.478 0.00 0.00 37.12 2.17
375 387 1.270839 GCCTCTGTTGTTGCAGGTAGA 60.271 52.381 0.00 0.00 37.12 2.59
377 389 0.602638 CGCCTCTGTTGTTGCAGGTA 60.603 55.000 0.00 0.00 37.12 3.08
378 390 1.893808 CGCCTCTGTTGTTGCAGGT 60.894 57.895 0.00 0.00 37.12 4.00
379 391 1.597854 TCGCCTCTGTTGTTGCAGG 60.598 57.895 0.00 0.00 37.12 4.85
381 393 2.243957 CGTCGCCTCTGTTGTTGCA 61.244 57.895 0.00 0.00 0.00 4.08
382 394 2.551270 CGTCGCCTCTGTTGTTGC 59.449 61.111 0.00 0.00 0.00 4.17
383 395 2.551270 GCGTCGCCTCTGTTGTTG 59.449 61.111 5.75 0.00 0.00 3.33
384 396 2.665185 GGCGTCGCCTCTGTTGTT 60.665 61.111 28.98 0.00 46.69 2.83
505 641 4.219115 AGGGAAGAGATATGAGCGAAGAA 58.781 43.478 0.00 0.00 0.00 2.52
558 990 9.650371 CGCAGTGTTAATTAGTAAGTATACGTA 57.350 33.333 0.00 0.00 37.11 3.57
559 991 8.397906 TCGCAGTGTTAATTAGTAAGTATACGT 58.602 33.333 0.00 0.00 37.11 3.57
560 992 8.772306 TCGCAGTGTTAATTAGTAAGTATACG 57.228 34.615 0.00 0.00 37.11 3.06
563 995 9.595823 AACATCGCAGTGTTAATTAGTAAGTAT 57.404 29.630 2.15 0.00 40.35 2.12
564 996 8.991243 AACATCGCAGTGTTAATTAGTAAGTA 57.009 30.769 2.15 0.00 40.35 2.24
581 1013 6.821160 TCTGATAGGATAAAACAAACATCGCA 59.179 34.615 0.00 0.00 0.00 5.10
599 1551 4.963318 TCCCAGCCTGTATTTCTGATAG 57.037 45.455 0.00 0.00 0.00 2.08
700 2359 1.689273 CTATAGAGTGACCCCTGGTGC 59.311 57.143 0.00 0.00 35.25 5.01
721 2434 3.747976 GCCATTTTCTGGGCGCGT 61.748 61.111 8.43 0.00 46.06 6.01
737 2450 3.060602 GTTATCTATCTCGGCACCAAGC 58.939 50.000 0.00 0.00 44.65 4.01
782 2503 2.100631 GTGTTGCCACCTCGGATCG 61.101 63.158 0.00 0.00 36.56 3.69
783 2504 3.890674 GTGTTGCCACCTCGGATC 58.109 61.111 0.00 0.00 36.56 3.36
1141 2897 1.519408 GTGGTTAGTTCATGGCACGT 58.481 50.000 0.00 0.00 0.00 4.49
1143 2899 1.539827 GTGGTGGTTAGTTCATGGCAC 59.460 52.381 0.00 0.00 0.00 5.01
1179 2956 0.654472 GCACGCGTACATAGCATTGC 60.654 55.000 13.44 2.77 36.53 3.56
1180 2957 0.930310 AGCACGCGTACATAGCATTG 59.070 50.000 13.44 0.00 34.19 2.82
1181 2958 2.502213 TAGCACGCGTACATAGCATT 57.498 45.000 13.44 0.00 34.19 3.56
1182 2959 2.034179 TCTTAGCACGCGTACATAGCAT 59.966 45.455 13.44 3.68 34.19 3.79
1183 2960 1.402613 TCTTAGCACGCGTACATAGCA 59.597 47.619 13.44 0.00 34.19 3.49
1184 2961 2.044860 CTCTTAGCACGCGTACATAGC 58.955 52.381 13.44 11.51 0.00 2.97
1185 2962 2.044860 GCTCTTAGCACGCGTACATAG 58.955 52.381 13.44 8.02 41.89 2.23
1186 2963 1.674441 AGCTCTTAGCACGCGTACATA 59.326 47.619 13.44 1.73 45.56 2.29
1187 2964 0.456221 AGCTCTTAGCACGCGTACAT 59.544 50.000 13.44 2.89 45.56 2.29
1188 2965 1.089112 TAGCTCTTAGCACGCGTACA 58.911 50.000 13.44 0.00 45.56 2.90
1189 2966 1.844962 GTTAGCTCTTAGCACGCGTAC 59.155 52.381 13.44 6.32 45.56 3.67
1190 2967 1.530441 CGTTAGCTCTTAGCACGCGTA 60.530 52.381 13.44 0.00 45.56 4.42
1191 2968 0.797249 CGTTAGCTCTTAGCACGCGT 60.797 55.000 5.58 5.58 45.56 6.01
1192 2969 0.522705 TCGTTAGCTCTTAGCACGCG 60.523 55.000 3.53 3.53 45.56 6.01
1193 2970 1.841450 ATCGTTAGCTCTTAGCACGC 58.159 50.000 0.00 0.00 45.56 5.34
1194 2971 3.179830 ACAATCGTTAGCTCTTAGCACG 58.820 45.455 0.00 3.78 45.56 5.34
1195 2972 4.266502 CAGACAATCGTTAGCTCTTAGCAC 59.733 45.833 0.00 0.00 45.56 4.40
1196 2973 4.157840 TCAGACAATCGTTAGCTCTTAGCA 59.842 41.667 0.00 0.00 45.56 3.49
1197 2974 4.673441 TCAGACAATCGTTAGCTCTTAGC 58.327 43.478 0.00 0.00 42.84 3.09
1198 2975 5.174761 GCATCAGACAATCGTTAGCTCTTAG 59.825 44.000 0.00 0.00 0.00 2.18
1554 3331 1.149854 GTGGACGAGGTTGGGGTTT 59.850 57.895 0.00 0.00 0.00 3.27
1941 3721 7.221450 AGTAGTTTACACTTTACAATGGCAGA 58.779 34.615 0.00 0.00 34.06 4.26
1942 3722 7.360946 GGAGTAGTTTACACTTTACAATGGCAG 60.361 40.741 0.00 0.00 34.06 4.85
2049 3835 3.205338 AGCACATCGCAACATATAAGCA 58.795 40.909 0.00 0.00 46.13 3.91
2078 3870 7.386851 TGACAAAATGTAACCACCAAGAAAAA 58.613 30.769 0.00 0.00 0.00 1.94
2079 3871 6.936279 TGACAAAATGTAACCACCAAGAAAA 58.064 32.000 0.00 0.00 0.00 2.29
2170 3973 1.114722 TCCTTCGTACACGGTTGGGT 61.115 55.000 1.39 0.00 40.29 4.51
2177 3980 4.264614 GTGACATGTAATCCTTCGTACACG 59.735 45.833 0.00 0.00 41.45 4.49
2178 3981 5.061808 GTGTGACATGTAATCCTTCGTACAC 59.938 44.000 0.00 0.00 33.23 2.90
2181 3984 5.165676 GTGTGTGACATGTAATCCTTCGTA 58.834 41.667 0.00 0.00 0.00 3.43
2225 4028 4.463879 CTCAGGAGGTGCGCCCAG 62.464 72.222 14.07 0.15 34.66 4.45
2262 4065 4.082787 ACGTTAACAAATCCTTCAGCATGG 60.083 41.667 6.39 0.00 36.16 3.66
2286 4089 4.040339 AGTCACACACAGTGTCATCCATAA 59.960 41.667 2.14 0.00 43.92 1.90
2322 4125 3.694043 TGTTGCTCACCTACAATGCTA 57.306 42.857 0.00 0.00 0.00 3.49
2330 4136 0.036164 ATGCCGTTGTTGCTCACCTA 59.964 50.000 0.00 0.00 0.00 3.08
2344 4150 1.737236 TGCAGCTTTACTAACATGCCG 59.263 47.619 0.00 0.00 32.77 5.69
2359 4165 2.515926 TCGACTCATTATCCTGCAGC 57.484 50.000 8.66 0.00 0.00 5.25
2367 4173 5.614308 TCCATGCTGAAATCGACTCATTAT 58.386 37.500 0.00 0.00 0.00 1.28
2383 4189 6.947464 AGTTTACAACACTATACTCCATGCT 58.053 36.000 0.00 0.00 0.00 3.79
2395 4201 8.559536 CACTATCAATCACAAGTTTACAACACT 58.440 33.333 0.00 0.00 0.00 3.55
2455 4261 7.888021 TGTCCTTTAACATAGATGTCATTTGGT 59.112 33.333 0.00 0.00 40.80 3.67
2475 4281 8.668653 TGTATGTATGAATATTCCCATGTCCTT 58.331 33.333 12.90 0.00 0.00 3.36
2482 4288 9.159254 AGTCTTCTGTATGTATGAATATTCCCA 57.841 33.333 12.90 7.39 0.00 4.37
2560 4366 2.024414 AGTGAAAAACCTTTGCGAGCT 58.976 42.857 0.00 0.00 0.00 4.09
2570 4376 6.370718 ACTTGATGTATACCGAGTGAAAAACC 59.629 38.462 0.00 0.00 0.00 3.27
2609 4415 2.892852 TCAGGCTTCATTGGAAACTTGG 59.107 45.455 0.00 0.00 29.91 3.61
2619 4425 9.553064 CACTAGATTTACTTATCAGGCTTCATT 57.447 33.333 0.00 0.00 0.00 2.57
2688 4494 9.255304 GCAAGTTATGTAATTTTCTGTTCCAAA 57.745 29.630 0.00 0.00 0.00 3.28
2689 4495 8.417106 TGCAAGTTATGTAATTTTCTGTTCCAA 58.583 29.630 0.00 0.00 0.00 3.53
2743 4565 4.929807 CCAGAAACACCCTGGCTT 57.070 55.556 0.00 0.00 43.93 4.35
2747 4569 1.809567 GCTTGGCCAGAAACACCCTG 61.810 60.000 5.11 0.00 0.00 4.45
2748 4570 1.531602 GCTTGGCCAGAAACACCCT 60.532 57.895 5.11 0.00 0.00 4.34
2749 4571 1.809567 CTGCTTGGCCAGAAACACCC 61.810 60.000 5.11 0.00 34.77 4.61
2750 4572 1.109323 ACTGCTTGGCCAGAAACACC 61.109 55.000 5.11 0.00 36.67 4.16
2751 4573 0.746659 AACTGCTTGGCCAGAAACAC 59.253 50.000 5.11 0.00 36.67 3.32
2752 4574 1.032014 GAACTGCTTGGCCAGAAACA 58.968 50.000 5.11 1.97 36.67 2.83
2753 4575 1.322442 AGAACTGCTTGGCCAGAAAC 58.678 50.000 5.11 0.00 36.67 2.78
2754 4576 2.106511 ACTAGAACTGCTTGGCCAGAAA 59.893 45.455 5.11 0.00 36.67 2.52
2755 4577 1.699634 ACTAGAACTGCTTGGCCAGAA 59.300 47.619 5.11 0.00 36.67 3.02
2756 4578 1.276421 GACTAGAACTGCTTGGCCAGA 59.724 52.381 5.11 0.00 36.67 3.86
2757 4579 1.277557 AGACTAGAACTGCTTGGCCAG 59.722 52.381 5.11 1.08 38.78 4.85
2758 4580 1.352083 AGACTAGAACTGCTTGGCCA 58.648 50.000 0.00 0.00 0.00 5.36
2759 4581 2.351455 GAAGACTAGAACTGCTTGGCC 58.649 52.381 0.00 0.00 0.00 5.36
2760 4582 1.996191 CGAAGACTAGAACTGCTTGGC 59.004 52.381 0.00 0.00 0.00 4.52
2761 4583 3.577649 TCGAAGACTAGAACTGCTTGG 57.422 47.619 0.00 0.00 0.00 3.61
2775 4597 2.508439 GGCGAATGGCGTCGAAGA 60.508 61.111 13.79 0.00 43.86 2.87
2781 4603 4.108299 TGGGATGGCGAATGGCGT 62.108 61.111 0.00 0.00 44.92 5.68
2782 4604 3.282157 CTGGGATGGCGAATGGCG 61.282 66.667 0.00 0.00 44.92 5.69
2783 4605 1.728490 GAACTGGGATGGCGAATGGC 61.728 60.000 0.00 0.00 42.51 4.40
2784 4606 1.103398 GGAACTGGGATGGCGAATGG 61.103 60.000 0.00 0.00 0.00 3.16
2785 4607 1.439353 CGGAACTGGGATGGCGAATG 61.439 60.000 0.00 0.00 0.00 2.67
2786 4608 1.153168 CGGAACTGGGATGGCGAAT 60.153 57.895 0.00 0.00 0.00 3.34
2787 4609 2.267642 CGGAACTGGGATGGCGAA 59.732 61.111 0.00 0.00 0.00 4.70
2788 4610 3.000819 ACGGAACTGGGATGGCGA 61.001 61.111 0.00 0.00 0.00 5.54
2789 4611 2.819595 CACGGAACTGGGATGGCG 60.820 66.667 0.00 0.00 0.00 5.69
2790 4612 1.450312 CTCACGGAACTGGGATGGC 60.450 63.158 0.00 0.00 0.00 4.40
2791 4613 1.450312 GCTCACGGAACTGGGATGG 60.450 63.158 0.00 0.00 0.00 3.51
2792 4614 0.036010 AAGCTCACGGAACTGGGATG 60.036 55.000 0.00 0.00 0.00 3.51
2793 4615 0.250513 GAAGCTCACGGAACTGGGAT 59.749 55.000 0.00 0.00 0.00 3.85
2794 4616 0.832135 AGAAGCTCACGGAACTGGGA 60.832 55.000 0.00 0.00 0.00 4.37
2795 4617 0.390472 GAGAAGCTCACGGAACTGGG 60.390 60.000 0.00 0.00 0.00 4.45
2796 4618 0.390472 GGAGAAGCTCACGGAACTGG 60.390 60.000 0.00 0.00 31.08 4.00
2797 4619 0.605589 AGGAGAAGCTCACGGAACTG 59.394 55.000 0.00 0.00 31.08 3.16
2798 4620 0.605589 CAGGAGAAGCTCACGGAACT 59.394 55.000 0.00 0.00 31.08 3.01
2799 4621 0.603569 TCAGGAGAAGCTCACGGAAC 59.396 55.000 0.00 0.00 31.08 3.62
2800 4622 0.891373 CTCAGGAGAAGCTCACGGAA 59.109 55.000 0.00 0.00 31.08 4.30
2801 4623 0.967887 CCTCAGGAGAAGCTCACGGA 60.968 60.000 0.00 0.00 31.08 4.69
2802 4624 0.967887 TCCTCAGGAGAAGCTCACGG 60.968 60.000 0.00 0.00 31.08 4.94
2803 4625 0.891373 TTCCTCAGGAGAAGCTCACG 59.109 55.000 0.00 0.00 31.21 4.35
2804 4626 2.934801 GCTTTCCTCAGGAGAAGCTCAC 60.935 54.545 23.20 5.06 39.88 3.51
2805 4627 1.277557 GCTTTCCTCAGGAGAAGCTCA 59.722 52.381 23.20 0.00 39.88 4.26
2806 4628 1.738700 CGCTTTCCTCAGGAGAAGCTC 60.739 57.143 25.54 9.45 40.33 4.09
2807 4629 0.248843 CGCTTTCCTCAGGAGAAGCT 59.751 55.000 25.54 0.00 40.33 3.74
2808 4630 0.247736 TCGCTTTCCTCAGGAGAAGC 59.752 55.000 21.70 21.70 39.75 3.86
2809 4631 1.134848 CCTCGCTTTCCTCAGGAGAAG 60.135 57.143 9.96 9.96 31.21 2.85
2810 4632 0.898320 CCTCGCTTTCCTCAGGAGAA 59.102 55.000 0.00 0.00 31.21 2.87
2811 4633 0.972983 CCCTCGCTTTCCTCAGGAGA 60.973 60.000 0.00 0.00 31.21 3.71
2812 4634 1.519719 CCCTCGCTTTCCTCAGGAG 59.480 63.158 0.00 0.00 31.21 3.69
2813 4635 1.990060 CCCCTCGCTTTCCTCAGGA 60.990 63.158 0.00 0.00 0.00 3.86
2814 4636 2.586792 CCCCTCGCTTTCCTCAGG 59.413 66.667 0.00 0.00 0.00 3.86
2815 4637 2.124942 GCCCCTCGCTTTCCTCAG 60.125 66.667 0.00 0.00 0.00 3.35
2816 4638 4.082523 CGCCCCTCGCTTTCCTCA 62.083 66.667 0.00 0.00 34.21 3.86
2817 4639 4.840005 CCGCCCCTCGCTTTCCTC 62.840 72.222 0.00 0.00 36.73 3.71
2826 4648 4.344865 TTGAAGCACCCGCCCCTC 62.345 66.667 0.00 0.00 39.83 4.30
2827 4649 4.351054 CTTGAAGCACCCGCCCCT 62.351 66.667 0.00 0.00 39.83 4.79
2828 4650 4.660938 ACTTGAAGCACCCGCCCC 62.661 66.667 0.00 0.00 39.83 5.80
2829 4651 3.365265 CACTTGAAGCACCCGCCC 61.365 66.667 0.00 0.00 39.83 6.13
2830 4652 1.734388 AAACACTTGAAGCACCCGCC 61.734 55.000 0.00 0.00 39.83 6.13
2831 4653 0.317854 GAAACACTTGAAGCACCCGC 60.318 55.000 0.00 0.00 38.99 6.13
2832 4654 0.041312 CGAAACACTTGAAGCACCCG 60.041 55.000 0.00 0.00 0.00 5.28
2833 4655 1.264288 CTCGAAACACTTGAAGCACCC 59.736 52.381 0.00 0.00 0.00 4.61
2834 4656 1.334149 GCTCGAAACACTTGAAGCACC 60.334 52.381 0.00 0.00 0.00 5.01
2835 4657 1.334149 GGCTCGAAACACTTGAAGCAC 60.334 52.381 0.00 0.00 0.00 4.40
2836 4658 0.944386 GGCTCGAAACACTTGAAGCA 59.056 50.000 0.00 0.00 0.00 3.91
2837 4659 0.110644 CGGCTCGAAACACTTGAAGC 60.111 55.000 0.00 0.00 0.00 3.86
2838 4660 0.512952 CCGGCTCGAAACACTTGAAG 59.487 55.000 0.00 0.00 0.00 3.02
2839 4661 0.882927 CCCGGCTCGAAACACTTGAA 60.883 55.000 0.00 0.00 0.00 2.69
2840 4662 1.301401 CCCGGCTCGAAACACTTGA 60.301 57.895 0.00 0.00 0.00 3.02
2841 4663 2.325082 CCCCGGCTCGAAACACTTG 61.325 63.158 0.00 0.00 0.00 3.16
2842 4664 2.032071 CCCCGGCTCGAAACACTT 59.968 61.111 0.00 0.00 0.00 3.16
2843 4665 4.699522 GCCCCGGCTCGAAACACT 62.700 66.667 0.00 0.00 38.26 3.55
2845 4667 3.969250 GATGCCCCGGCTCGAAACA 62.969 63.158 7.35 0.00 42.51 2.83
2846 4668 3.202706 GATGCCCCGGCTCGAAAC 61.203 66.667 7.35 0.00 42.51 2.78
2847 4669 4.830765 CGATGCCCCGGCTCGAAA 62.831 66.667 17.30 0.00 41.01 3.46
2859 4681 3.344215 CAGGAGGCGATGCGATGC 61.344 66.667 0.00 0.00 0.00 3.91
2860 4682 3.344215 GCAGGAGGCGATGCGATG 61.344 66.667 0.00 0.00 31.87 3.84
2869 4691 1.387539 GGAAGATTCTTGCAGGAGGC 58.612 55.000 12.51 0.00 45.13 4.70
2870 4692 1.409381 GGGGAAGATTCTTGCAGGAGG 60.409 57.143 18.13 0.00 0.00 4.30
2871 4693 1.745141 CGGGGAAGATTCTTGCAGGAG 60.745 57.143 18.13 4.12 0.00 3.69
2872 4694 0.253044 CGGGGAAGATTCTTGCAGGA 59.747 55.000 18.13 0.00 0.00 3.86
2873 4695 0.749454 CCGGGGAAGATTCTTGCAGG 60.749 60.000 18.13 15.88 0.00 4.85
2874 4696 0.035056 ACCGGGGAAGATTCTTGCAG 60.035 55.000 18.13 11.57 0.00 4.41
2875 4697 0.322456 CACCGGGGAAGATTCTTGCA 60.322 55.000 18.13 0.00 0.00 4.08
2876 4698 1.657751 GCACCGGGGAAGATTCTTGC 61.658 60.000 8.67 9.26 0.00 4.01
2877 4699 1.032114 GGCACCGGGGAAGATTCTTG 61.032 60.000 8.67 0.00 0.00 3.02
2878 4700 1.208165 AGGCACCGGGGAAGATTCTT 61.208 55.000 8.67 0.00 0.00 2.52
2879 4701 1.616628 AGGCACCGGGGAAGATTCT 60.617 57.895 8.67 0.00 0.00 2.40
2880 4702 1.153147 GAGGCACCGGGGAAGATTC 60.153 63.158 8.67 0.00 0.00 2.52
2881 4703 1.208165 AAGAGGCACCGGGGAAGATT 61.208 55.000 8.67 0.00 0.00 2.40
2882 4704 1.616628 AAGAGGCACCGGGGAAGAT 60.617 57.895 8.67 0.00 0.00 2.40
2883 4705 2.203938 AAGAGGCACCGGGGAAGA 60.204 61.111 8.67 0.00 0.00 2.87
2884 4706 2.045926 CAAGAGGCACCGGGGAAG 60.046 66.667 8.67 0.00 0.00 3.46
2885 4707 2.852075 ACAAGAGGCACCGGGGAA 60.852 61.111 8.67 0.00 0.00 3.97
2886 4708 3.636231 CACAAGAGGCACCGGGGA 61.636 66.667 8.67 0.00 0.00 4.81
2890 4712 4.988598 ACCGCACAAGAGGCACCG 62.989 66.667 0.00 0.00 38.42 4.94
2891 4713 3.357079 CACCGCACAAGAGGCACC 61.357 66.667 0.00 0.00 38.42 5.01
2892 4714 4.030452 GCACCGCACAAGAGGCAC 62.030 66.667 0.00 0.00 38.42 5.01
2893 4715 4.254709 AGCACCGCACAAGAGGCA 62.255 61.111 0.00 0.00 38.42 4.75
2894 4716 3.730761 CAGCACCGCACAAGAGGC 61.731 66.667 0.00 0.00 38.42 4.70
2895 4717 2.031012 TCAGCACCGCACAAGAGG 59.969 61.111 0.00 0.00 41.02 3.69
2896 4718 2.031516 CCTCAGCACCGCACAAGAG 61.032 63.158 0.00 0.00 0.00 2.85
2897 4719 2.031012 CCTCAGCACCGCACAAGA 59.969 61.111 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.