Multiple sequence alignment - TraesCS1D01G428000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G428000 chr1D 100.000 4869 0 0 543 5411 480406368 480401500 0.000000e+00 8992.0
1 TraesCS1D01G428000 chr1D 100.000 543 0 0 5714 6256 480401197 480400655 0.000000e+00 1003.0
2 TraesCS1D01G428000 chr1D 82.897 649 56 27 4786 5411 479107945 479108561 3.320000e-147 532.0
3 TraesCS1D01G428000 chr1D 100.000 286 0 0 1 286 480406910 480406625 4.290000e-146 529.0
4 TraesCS1D01G428000 chr1D 96.104 77 2 1 5714 5790 479108569 479108644 2.370000e-24 124.0
5 TraesCS1D01G428000 chr1A 94.165 3222 93 33 582 3758 576669796 576666625 0.000000e+00 4820.0
6 TraesCS1D01G428000 chr1A 96.833 600 16 1 4726 5322 576666628 576666029 0.000000e+00 1000.0
7 TraesCS1D01G428000 chr1A 88.648 599 34 11 2798 3380 588674363 588674943 0.000000e+00 699.0
8 TraesCS1D01G428000 chr1A 86.058 208 15 6 3 198 576670037 576669832 1.770000e-50 211.0
9 TraesCS1D01G428000 chr1A 92.553 94 7 0 5122 5215 575389095 575389188 1.090000e-27 135.0
10 TraesCS1D01G428000 chr1A 100.000 31 0 0 1394 1424 588674304 588674334 2.440000e-04 58.4
11 TraesCS1D01G428000 chr1B 92.825 3303 100 52 595 3827 668718714 668715479 0.000000e+00 4660.0
12 TraesCS1D01G428000 chr1B 95.447 615 16 3 4798 5411 668715478 668714875 0.000000e+00 970.0
13 TraesCS1D01G428000 chr1B 93.367 392 17 4 5714 6097 668714867 668714477 7.040000e-159 571.0
14 TraesCS1D01G428000 chr1B 89.000 200 17 5 1 200 191944081 191943887 6.270000e-60 243.0
15 TraesCS1D01G428000 chr1B 89.011 182 17 2 4786 4966 667275459 667275638 8.160000e-54 222.0
16 TraesCS1D01G428000 chr1B 89.655 174 13 4 543 714 191943587 191943417 3.800000e-52 217.0
17 TraesCS1D01G428000 chr1B 86.957 138 11 2 5230 5367 667275690 667275820 1.410000e-31 148.0
18 TraesCS1D01G428000 chr2D 91.019 412 20 7 825 1229 650043639 650044040 1.980000e-149 540.0
19 TraesCS1D01G428000 chr3B 85.481 489 44 13 4086 4571 259457899 259458363 9.430000e-133 484.0
20 TraesCS1D01G428000 chr3B 73.560 382 53 30 3399 3759 259456517 259456871 1.110000e-17 102.0
21 TraesCS1D01G428000 chr2B 88.998 409 22 9 830 1233 574038605 574038995 9.430000e-133 484.0
22 TraesCS1D01G428000 chr2B 89.000 200 17 5 1 200 216950242 216950436 6.270000e-60 243.0
23 TraesCS1D01G428000 chr2B 88.060 201 19 5 1 201 4334299 4334104 3.770000e-57 233.0
24 TraesCS1D01G428000 chr2B 87.562 201 20 5 1 201 122704648 122704453 1.750000e-55 228.0
25 TraesCS1D01G428000 chr2B 90.533 169 11 4 543 709 216950736 216950901 1.060000e-52 219.0
26 TraesCS1D01G428000 chr2B 89.349 169 13 4 543 709 4333805 4333640 2.290000e-49 207.0
27 TraesCS1D01G428000 chr2B 90.132 152 13 2 543 692 122704154 122704003 4.950000e-46 196.0
28 TraesCS1D01G428000 chr3D 80.564 674 65 19 4086 4730 181113232 181113868 5.720000e-125 459.0
29 TraesCS1D01G428000 chr3D 83.791 401 44 4 3693 4082 181112344 181112734 1.660000e-95 361.0
30 TraesCS1D01G428000 chr3D 81.132 106 15 1 3399 3499 181111247 181111352 5.200000e-11 80.5
31 TraesCS1D01G428000 chr3A 83.198 494 51 14 4086 4577 227914934 227914471 2.080000e-114 424.0
32 TraesCS1D01G428000 chr3A 83.883 273 33 2 3812 4082 227915730 227915467 3.740000e-62 250.0
33 TraesCS1D01G428000 chr7B 91.949 236 12 4 894 1123 577806776 577807010 2.180000e-84 324.0
34 TraesCS1D01G428000 chr7B 89.000 200 17 5 1 200 75064654 75064460 6.270000e-60 243.0
35 TraesCS1D01G428000 chr7B 89.888 178 13 4 543 718 75064160 75063986 2.270000e-54 224.0
36 TraesCS1D01G428000 chr7B 90.533 169 11 4 543 709 649151267 649151102 1.060000e-52 219.0
37 TraesCS1D01G428000 chr7B 94.805 77 4 0 124 200 649151643 649151567 3.060000e-23 121.0
38 TraesCS1D01G428000 chr7B 96.875 32 0 1 3157 3188 639086488 639086518 1.100000e-02 52.8
39 TraesCS1D01G428000 chr7A 88.500 200 18 5 1 200 697948656 697948850 2.920000e-58 237.0
40 TraesCS1D01G428000 chr7A 90.230 174 12 4 543 714 697949150 697949320 8.160000e-54 222.0
41 TraesCS1D01G428000 chr2A 90.476 147 12 2 543 687 383614875 383614729 6.400000e-45 193.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G428000 chr1D 480400655 480406910 6255 True 3508.000000 8992 100.000000 1 6256 3 chr1D.!!$R1 6255
1 TraesCS1D01G428000 chr1D 479107945 479108644 699 False 328.000000 532 89.500500 4786 5790 2 chr1D.!!$F1 1004
2 TraesCS1D01G428000 chr1A 576666029 576670037 4008 True 2010.333333 4820 92.352000 3 5322 3 chr1A.!!$R1 5319
3 TraesCS1D01G428000 chr1A 588674304 588674943 639 False 378.700000 699 94.324000 1394 3380 2 chr1A.!!$F2 1986
4 TraesCS1D01G428000 chr1B 668714477 668718714 4237 True 2067.000000 4660 93.879667 595 6097 3 chr1B.!!$R2 5502
5 TraesCS1D01G428000 chr1B 191943417 191944081 664 True 230.000000 243 89.327500 1 714 2 chr1B.!!$R1 713
6 TraesCS1D01G428000 chr3B 259456517 259458363 1846 False 293.000000 484 79.520500 3399 4571 2 chr3B.!!$F1 1172
7 TraesCS1D01G428000 chr2B 216950242 216950901 659 False 231.000000 243 89.766500 1 709 2 chr2B.!!$F2 708
8 TraesCS1D01G428000 chr2B 4333640 4334299 659 True 220.000000 233 88.704500 1 709 2 chr2B.!!$R1 708
9 TraesCS1D01G428000 chr2B 122704003 122704648 645 True 212.000000 228 88.847000 1 692 2 chr2B.!!$R2 691
10 TraesCS1D01G428000 chr3D 181111247 181113868 2621 False 300.166667 459 81.829000 3399 4730 3 chr3D.!!$F1 1331
11 TraesCS1D01G428000 chr3A 227914471 227915730 1259 True 337.000000 424 83.540500 3812 4577 2 chr3A.!!$R1 765
12 TraesCS1D01G428000 chr7B 75063986 75064654 668 True 233.500000 243 89.444000 1 718 2 chr7B.!!$R1 717
13 TraesCS1D01G428000 chr7A 697948656 697949320 664 False 229.500000 237 89.365000 1 714 2 chr7A.!!$F1 713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 417 0.255604 TTGCATGGGATGGATGTCGT 59.744 50.000 0.00 0.0 0.00 4.34 F
237 438 0.313987 TCGATGAATGTCGGGATCGG 59.686 55.000 0.00 0.0 41.74 4.18 F
1214 1477 0.542938 GGCAAAGCCCCTTCCTTTCT 60.543 55.000 0.00 0.0 44.06 2.52 F
1227 1490 0.725686 CCTTTCTGCATCACGCTCTG 59.274 55.000 0.00 0.0 43.06 3.35 F
2792 3103 1.071471 AACGGCCACCAACTCAGAG 59.929 57.895 2.24 0.0 0.00 3.35 F
3841 5023 4.789012 ACATCACTAGGGCAAAACATTG 57.211 40.909 0.00 0.0 0.00 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1298 1566 0.040958 CTCGCCAAGTTCTGCAACAC 60.041 55.000 0.0 0.0 34.60 3.32 R
1810 2099 0.108585 TCCAGACCAGGCAAACAGAC 59.891 55.000 0.0 0.0 0.00 3.51 R
2863 3178 3.517296 TGAAATGGCTGGAAACTACCA 57.483 42.857 0.0 0.0 39.74 3.25 R
3404 3729 7.471721 TCAAATCGCATTTATAGAAGTTGGTG 58.528 34.615 0.0 0.0 0.00 4.17 R
3846 5028 0.394762 TCTGGTCCATCATGCTTGCC 60.395 55.000 0.0 0.0 0.00 4.52 R
5838 7811 0.183492 ACCATAAGGCACCGCATGAT 59.817 50.000 0.0 0.0 39.06 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.646912 TCGGTGTACCAAATCCTCCA 58.353 50.000 1.50 0.00 35.14 3.86
81 83 5.685520 TTGGCTCCATATTACTACACACA 57.314 39.130 0.00 0.00 0.00 3.72
82 84 5.018539 TGGCTCCATATTACTACACACAC 57.981 43.478 0.00 0.00 0.00 3.82
83 85 4.468153 TGGCTCCATATTACTACACACACA 59.532 41.667 0.00 0.00 0.00 3.72
102 104 3.684788 CACAGCTACACGATTAGCCTTTT 59.315 43.478 13.97 0.00 44.93 2.27
115 117 6.017109 CGATTAGCCTTTTATACAACAGCCAT 60.017 38.462 0.00 0.00 0.00 4.40
117 119 8.940397 ATTAGCCTTTTATACAACAGCCATAT 57.060 30.769 0.00 0.00 0.00 1.78
120 122 8.340618 AGCCTTTTATACAACAGCCATATATG 57.659 34.615 5.68 5.68 0.00 1.78
121 123 7.944554 AGCCTTTTATACAACAGCCATATATGT 59.055 33.333 11.73 0.00 0.00 2.29
122 124 9.226606 GCCTTTTATACAACAGCCATATATGTA 57.773 33.333 11.73 0.00 0.00 2.29
210 411 2.241941 AGTATGTGTTGCATGGGATGGA 59.758 45.455 0.00 0.00 38.47 3.41
213 414 1.272592 TGTGTTGCATGGGATGGATGT 60.273 47.619 0.00 0.00 0.00 3.06
214 415 1.406539 GTGTTGCATGGGATGGATGTC 59.593 52.381 0.00 0.00 0.00 3.06
215 416 0.664761 GTTGCATGGGATGGATGTCG 59.335 55.000 0.00 0.00 0.00 4.35
216 417 0.255604 TTGCATGGGATGGATGTCGT 59.744 50.000 0.00 0.00 0.00 4.34
217 418 0.464193 TGCATGGGATGGATGTCGTG 60.464 55.000 0.00 0.00 0.00 4.35
218 419 0.464373 GCATGGGATGGATGTCGTGT 60.464 55.000 0.00 0.00 0.00 4.49
224 425 1.067060 GGATGGATGTCGTGTCGATGA 59.933 52.381 0.00 0.00 38.42 2.92
226 427 2.959507 TGGATGTCGTGTCGATGAAT 57.040 45.000 0.00 0.00 38.42 2.57
236 437 1.269051 TGTCGATGAATGTCGGGATCG 60.269 52.381 0.00 0.00 41.74 3.69
237 438 0.313987 TCGATGAATGTCGGGATCGG 59.686 55.000 0.00 0.00 41.74 4.18
257 458 3.447742 GGTTCAATGGAAATTGGATCGC 58.552 45.455 0.00 0.00 34.13 4.58
573 781 7.382898 GGGTCTTGTAAAATTAATTTGCTGGA 58.617 34.615 14.04 6.90 34.99 3.86
661 873 2.044551 GGGCTGAGAGCAAAGGGG 60.045 66.667 0.00 0.00 44.75 4.79
718 934 8.623903 TCACAAGATATGTTGCCTTTATGAATC 58.376 33.333 12.27 0.00 41.46 2.52
719 935 7.864379 CACAAGATATGTTGCCTTTATGAATCC 59.136 37.037 12.27 0.00 41.46 3.01
720 936 7.560991 ACAAGATATGTTGCCTTTATGAATCCA 59.439 33.333 12.27 0.00 40.06 3.41
721 937 8.582437 CAAGATATGTTGCCTTTATGAATCCAT 58.418 33.333 0.00 0.00 36.81 3.41
722 938 8.345724 AGATATGTTGCCTTTATGAATCCATC 57.654 34.615 0.00 0.00 34.31 3.51
723 939 7.946219 AGATATGTTGCCTTTATGAATCCATCA 59.054 33.333 0.00 0.00 43.67 3.07
782 998 2.356313 CGCGCACCTGACTGAACT 60.356 61.111 8.75 0.00 0.00 3.01
810 1030 4.683334 GCACGCACGCTTGTTCCC 62.683 66.667 0.00 0.00 0.00 3.97
881 1120 2.280865 GCCTAAATCCTCCGCCCG 60.281 66.667 0.00 0.00 0.00 6.13
890 1129 2.829003 CTCCGCCCGTCTGCTCTA 60.829 66.667 0.00 0.00 0.00 2.43
891 1130 3.127352 CTCCGCCCGTCTGCTCTAC 62.127 68.421 0.00 0.00 0.00 2.59
892 1131 3.449227 CCGCCCGTCTGCTCTACA 61.449 66.667 0.00 0.00 0.00 2.74
893 1132 2.202623 CGCCCGTCTGCTCTACAC 60.203 66.667 0.00 0.00 0.00 2.90
894 1133 2.184579 GCCCGTCTGCTCTACACC 59.815 66.667 0.00 0.00 0.00 4.16
895 1134 2.490217 CCCGTCTGCTCTACACCG 59.510 66.667 0.00 0.00 0.00 4.94
896 1135 2.202623 CCGTCTGCTCTACACCGC 60.203 66.667 0.00 0.00 0.00 5.68
897 1136 2.202623 CGTCTGCTCTACACCGCC 60.203 66.667 0.00 0.00 0.00 6.13
898 1137 2.184579 GTCTGCTCTACACCGCCC 59.815 66.667 0.00 0.00 0.00 6.13
899 1138 3.075005 TCTGCTCTACACCGCCCC 61.075 66.667 0.00 0.00 0.00 5.80
900 1139 3.077556 CTGCTCTACACCGCCCCT 61.078 66.667 0.00 0.00 0.00 4.79
901 1140 3.075005 TGCTCTACACCGCCCCTC 61.075 66.667 0.00 0.00 0.00 4.30
902 1141 3.851128 GCTCTACACCGCCCCTCC 61.851 72.222 0.00 0.00 0.00 4.30
903 1142 3.528370 CTCTACACCGCCCCTCCG 61.528 72.222 0.00 0.00 0.00 4.63
929 1168 3.574445 CTCCGAGATCGACGCCGT 61.574 66.667 3.31 0.00 43.02 5.68
932 1171 3.872728 CGAGATCGACGCCGTCCA 61.873 66.667 12.26 0.00 43.02 4.02
957 1203 4.559063 CCCGCCCATCTGCTCCTG 62.559 72.222 0.00 0.00 0.00 3.86
959 1205 4.172512 CGCCCATCTGCTCCTGCT 62.173 66.667 0.00 0.00 40.48 4.24
960 1206 2.203181 GCCCATCTGCTCCTGCTC 60.203 66.667 0.00 0.00 40.48 4.26
961 1207 2.509916 CCCATCTGCTCCTGCTCC 59.490 66.667 0.00 0.00 40.48 4.70
962 1208 2.071262 CCCATCTGCTCCTGCTCCT 61.071 63.158 0.00 0.00 40.48 3.69
963 1209 1.146485 CCATCTGCTCCTGCTCCTG 59.854 63.158 0.00 0.00 40.48 3.86
964 1210 1.524165 CATCTGCTCCTGCTCCTGC 60.524 63.158 0.00 0.00 40.48 4.85
1184 1445 1.152715 ACTCCGAGGTAGGCTAGCC 60.153 63.158 27.19 27.19 0.00 3.93
1214 1477 0.542938 GGCAAAGCCCCTTCCTTTCT 60.543 55.000 0.00 0.00 44.06 2.52
1227 1490 0.725686 CCTTTCTGCATCACGCTCTG 59.274 55.000 0.00 0.00 43.06 3.35
1289 1557 7.119699 CCTCTGTTTTGTTTGATGCTATCAGTA 59.880 37.037 0.00 0.00 40.94 2.74
1296 1564 5.471116 TGTTTGATGCTATCAGTATCATGGC 59.529 40.000 7.61 3.29 44.67 4.40
1298 1566 4.828829 TGATGCTATCAGTATCATGGCTG 58.171 43.478 3.22 0.00 41.36 4.85
1299 1567 4.285260 TGATGCTATCAGTATCATGGCTGT 59.715 41.667 3.22 4.25 41.36 4.40
1602 1871 7.273164 CACGCATATTGTGTTTGATTGTATTGT 59.727 33.333 0.00 0.00 39.36 2.71
1640 1929 3.730715 CCGAGTGACAAATTGTTGCTTTC 59.269 43.478 0.00 0.00 38.39 2.62
1641 1930 3.418619 CGAGTGACAAATTGTTGCTTTCG 59.581 43.478 0.00 3.05 38.39 3.46
1782 2071 1.135402 GTTTGCCACCGGAACATGATC 60.135 52.381 9.46 0.00 0.00 2.92
1865 2161 9.002600 TGTGACTACTTTAGTTTACTCGTGATA 57.997 33.333 0.00 0.00 39.59 2.15
1887 2183 9.421399 TGATACAACTTCACTTCCTCTATATCA 57.579 33.333 0.00 0.00 0.00 2.15
1987 2284 7.674348 TCTTGTCGATAACTGGGATATAAGGAT 59.326 37.037 0.00 0.00 0.00 3.24
2089 2386 6.700960 TGGCAACTTTGATTTGATGTTTACTG 59.299 34.615 0.00 0.00 37.61 2.74
2339 2636 1.767759 ACAAAAGCCAGCTCACACTT 58.232 45.000 0.00 0.00 0.00 3.16
2348 2645 3.813166 GCCAGCTCACACTTTGTACTTTA 59.187 43.478 0.00 0.00 0.00 1.85
2353 2650 7.591426 CCAGCTCACACTTTGTACTTTAAAATC 59.409 37.037 0.00 0.00 0.00 2.17
2728 3032 3.609853 TCAGGATGGACAACAACTATGC 58.390 45.455 0.00 0.00 36.16 3.14
2792 3103 1.071471 AACGGCCACCAACTCAGAG 59.929 57.895 2.24 0.00 0.00 3.35
2863 3178 4.916041 TCAGGTCAAGAAGATTGTGGAT 57.084 40.909 0.00 0.00 0.00 3.41
3131 3450 8.681486 TGCTTTGCATATATCTGTTGTAAGAT 57.319 30.769 0.00 0.00 35.77 2.40
3404 3729 8.824781 CAATGATGCCATATACTGCTATCTAAC 58.175 37.037 0.00 0.00 31.59 2.34
3764 4925 6.223120 GGCAAACAATGAGAATACTTGGTTT 58.777 36.000 0.00 0.00 27.62 3.27
3841 5023 4.789012 ACATCACTAGGGCAAAACATTG 57.211 40.909 0.00 0.00 0.00 2.82
3846 5028 4.278170 TCACTAGGGCAAAACATTGAACAG 59.722 41.667 0.00 0.00 0.00 3.16
3851 5033 2.545106 GGCAAAACATTGAACAGGCAAG 59.455 45.455 0.00 0.00 0.00 4.01
3852 5034 2.032636 GCAAAACATTGAACAGGCAAGC 60.033 45.455 0.00 0.00 0.00 4.01
3859 5041 1.179152 TGAACAGGCAAGCATGATGG 58.821 50.000 14.06 0.00 0.00 3.51
3876 5058 5.604758 TGATGGACCAGAGAGAATACTTG 57.395 43.478 0.00 0.00 0.00 3.16
3884 5066 6.054295 ACCAGAGAGAATACTTGCAATCATC 58.946 40.000 0.00 0.00 0.00 2.92
3889 5071 5.104193 AGAGAATACTTGCAATCATCCCAGT 60.104 40.000 0.00 0.00 0.00 4.00
3893 5075 4.240881 ACTTGCAATCATCCCAGTATGT 57.759 40.909 0.00 0.00 0.00 2.29
3896 5078 2.300433 GCAATCATCCCAGTATGTGCA 58.700 47.619 0.00 0.00 32.16 4.57
3899 5081 3.870538 ATCATCCCAGTATGTGCACAT 57.129 42.857 33.20 33.20 40.22 3.21
3906 5088 4.040339 TCCCAGTATGTGCACATATGTAGG 59.960 45.833 35.33 30.13 40.53 3.18
3933 5115 2.725221 ATTCCTTGGATGGCAGACTC 57.275 50.000 0.00 0.00 0.00 3.36
3935 5117 1.153289 CCTTGGATGGCAGACTCCG 60.153 63.158 0.00 0.00 34.05 4.63
3941 5123 1.412710 GGATGGCAGACTCCGTTATCA 59.587 52.381 0.00 0.00 0.00 2.15
3943 5125 3.495100 GGATGGCAGACTCCGTTATCAAT 60.495 47.826 0.00 0.00 0.00 2.57
3955 5137 4.081365 TCCGTTATCAATAACAGTGCCTGA 60.081 41.667 12.14 0.00 42.02 3.86
3956 5138 4.634004 CCGTTATCAATAACAGTGCCTGAA 59.366 41.667 12.14 0.00 42.02 3.02
4043 5228 8.146412 GGGATATAATACAGTAGACAAACGGTT 58.854 37.037 0.00 0.00 0.00 4.44
4053 5238 6.424509 CAGTAGACAAACGGTTTATGTTACCA 59.575 38.462 5.69 0.00 35.31 3.25
4082 5267 4.104086 ACATTGTCAGGAGATCCAGGTAA 58.896 43.478 0.92 0.00 38.89 2.85
4083 5268 4.080863 ACATTGTCAGGAGATCCAGGTAAC 60.081 45.833 0.92 0.00 38.89 2.50
4084 5269 2.467880 TGTCAGGAGATCCAGGTAACC 58.532 52.381 0.92 0.00 38.89 2.85
4089 5997 4.010349 CAGGAGATCCAGGTAACCAAAAC 58.990 47.826 0.92 0.00 38.89 2.43
4097 6005 6.195600 TCCAGGTAACCAAAACATCTTACT 57.804 37.500 0.00 0.00 37.17 2.24
4113 6021 4.922206 TCTTACTGAACAAGGCCATCATT 58.078 39.130 5.01 0.72 0.00 2.57
4119 6027 3.633525 TGAACAAGGCCATCATTATCAGC 59.366 43.478 5.01 0.00 0.00 4.26
4132 6040 4.164030 TCATTATCAGCTCCTTGTGGCTTA 59.836 41.667 0.00 0.00 36.59 3.09
4135 6043 3.222173 TCAGCTCCTTGTGGCTTAAAA 57.778 42.857 0.00 0.00 36.59 1.52
4166 6074 9.739276 AATCTATCATTTCTAGTTTTGGTGACA 57.261 29.630 0.00 0.00 39.83 3.58
4191 6099 1.532868 GCGCACTGAAGCCCTATATTG 59.467 52.381 0.30 0.00 0.00 1.90
4202 6110 3.580458 AGCCCTATATTGCGAGACAAGAT 59.420 43.478 0.00 0.00 42.87 2.40
4209 6117 1.825090 TGCGAGACAAGATGCCATTT 58.175 45.000 0.00 0.00 0.00 2.32
4210 6118 2.161855 TGCGAGACAAGATGCCATTTT 58.838 42.857 0.00 0.00 0.00 1.82
4211 6119 2.557924 TGCGAGACAAGATGCCATTTTT 59.442 40.909 0.00 0.00 0.00 1.94
4214 6122 4.797471 CGAGACAAGATGCCATTTTTGAA 58.203 39.130 9.11 0.00 0.00 2.69
4229 6137 7.638134 CCATTTTTGAAAACCAACAACCTATG 58.362 34.615 0.00 0.00 33.85 2.23
4230 6138 7.255070 CCATTTTTGAAAACCAACAACCTATGG 60.255 37.037 0.00 0.00 42.60 2.74
4239 6147 5.144100 ACCAACAACCTATGGTCAAAATGA 58.856 37.500 0.00 0.00 46.94 2.57
4249 6157 8.043710 ACCTATGGTCAAAATGAAAACAAACAA 58.956 29.630 0.00 0.00 0.00 2.83
4250 6158 8.550376 CCTATGGTCAAAATGAAAACAAACAAG 58.450 33.333 0.00 0.00 0.00 3.16
4251 6159 6.175712 TGGTCAAAATGAAAACAAACAAGC 57.824 33.333 0.00 0.00 0.00 4.01
4252 6160 5.702670 TGGTCAAAATGAAAACAAACAAGCA 59.297 32.000 0.00 0.00 0.00 3.91
4254 6162 7.080724 GGTCAAAATGAAAACAAACAAGCAAA 58.919 30.769 0.00 0.00 0.00 3.68
4255 6163 7.060518 GGTCAAAATGAAAACAAACAAGCAAAC 59.939 33.333 0.00 0.00 0.00 2.93
4257 6165 8.131100 TCAAAATGAAAACAAACAAGCAAACAA 58.869 25.926 0.00 0.00 0.00 2.83
4259 6167 7.850268 AATGAAAACAAACAAGCAAACAAAC 57.150 28.000 0.00 0.00 0.00 2.93
4260 6168 6.363577 TGAAAACAAACAAGCAAACAAACA 57.636 29.167 0.00 0.00 0.00 2.83
4262 6170 7.074502 TGAAAACAAACAAGCAAACAAACATC 58.925 30.769 0.00 0.00 0.00 3.06
4265 6173 4.993584 ACAAACAAGCAAACAAACATCACA 59.006 33.333 0.00 0.00 0.00 3.58
4266 6174 5.107143 ACAAACAAGCAAACAAACATCACAC 60.107 36.000 0.00 0.00 0.00 3.82
4267 6175 4.185467 ACAAGCAAACAAACATCACACA 57.815 36.364 0.00 0.00 0.00 3.72
4268 6176 3.925913 ACAAGCAAACAAACATCACACAC 59.074 39.130 0.00 0.00 0.00 3.82
4269 6177 3.865011 AGCAAACAAACATCACACACA 57.135 38.095 0.00 0.00 0.00 3.72
4270 6178 4.185467 AGCAAACAAACATCACACACAA 57.815 36.364 0.00 0.00 0.00 3.33
4271 6179 4.757594 AGCAAACAAACATCACACACAAT 58.242 34.783 0.00 0.00 0.00 2.71
4272 6180 5.900425 AGCAAACAAACATCACACACAATA 58.100 33.333 0.00 0.00 0.00 1.90
4273 6181 5.978919 AGCAAACAAACATCACACACAATAG 59.021 36.000 0.00 0.00 0.00 1.73
4274 6182 5.748152 GCAAACAAACATCACACACAATAGT 59.252 36.000 0.00 0.00 0.00 2.12
4277 6185 9.295214 CAAACAAACATCACACACAATAGTTTA 57.705 29.630 0.00 0.00 0.00 2.01
4280 6188 8.015087 ACAAACATCACACACAATAGTTTATCG 58.985 33.333 0.00 0.00 0.00 2.92
4291 6199 6.468956 CACAATAGTTTATCGGAATTGTGCAC 59.531 38.462 10.75 10.75 45.86 4.57
4294 6202 3.190535 AGTTTATCGGAATTGTGCACACC 59.809 43.478 21.56 16.90 0.00 4.16
4296 6204 0.881118 ATCGGAATTGTGCACACCAC 59.119 50.000 21.56 13.00 44.90 4.16
4297 6205 0.179032 TCGGAATTGTGCACACCACT 60.179 50.000 21.56 3.74 44.92 4.00
4298 6206 1.070914 TCGGAATTGTGCACACCACTA 59.929 47.619 21.56 4.51 44.92 2.74
4299 6207 1.464608 CGGAATTGTGCACACCACTAG 59.535 52.381 21.56 6.02 44.92 2.57
4300 6208 2.504367 GGAATTGTGCACACCACTAGT 58.496 47.619 21.56 3.02 44.92 2.57
4301 6209 2.884639 GGAATTGTGCACACCACTAGTT 59.115 45.455 21.56 5.90 44.92 2.24
4302 6210 3.317993 GGAATTGTGCACACCACTAGTTT 59.682 43.478 21.56 3.30 44.92 2.66
4305 6213 2.992593 TGTGCACACCACTAGTTTTGA 58.007 42.857 17.42 0.00 44.92 2.69
4328 6236 9.967346 TTGATATCTTAGATTTGGAAGTACTCG 57.033 33.333 0.00 0.00 0.00 4.18
4334 6242 4.832248 AGATTTGGAAGTACTCGAATGCA 58.168 39.130 0.00 0.00 0.00 3.96
4335 6243 4.872691 AGATTTGGAAGTACTCGAATGCAG 59.127 41.667 0.00 0.00 0.00 4.41
4336 6244 3.953712 TTGGAAGTACTCGAATGCAGA 57.046 42.857 0.00 0.00 0.00 4.26
4337 6245 4.471904 TTGGAAGTACTCGAATGCAGAT 57.528 40.909 0.00 0.00 0.00 2.90
4377 6285 2.579873 ACTGCTGCAATGGATGGTATC 58.420 47.619 3.02 0.00 0.00 2.24
4424 6332 4.467769 GACACATCCATTCCCAAGATGAT 58.532 43.478 6.25 0.00 39.84 2.45
4431 6339 3.571401 CCATTCCCAAGATGATAGTTGGC 59.429 47.826 1.36 0.00 41.77 4.52
4451 6359 3.939592 GGCACCTTTGATACAAGAGGTAC 59.060 47.826 13.45 10.23 40.42 3.34
4453 6361 5.186198 GCACCTTTGATACAAGAGGTACAT 58.814 41.667 13.45 0.00 40.42 2.29
4456 6364 7.309194 GCACCTTTGATACAAGAGGTACATTTT 60.309 37.037 13.45 0.00 40.42 1.82
4460 6368 5.505780 TGATACAAGAGGTACATTTTGGGG 58.494 41.667 14.32 0.00 34.07 4.96
4461 6369 5.251932 TGATACAAGAGGTACATTTTGGGGA 59.748 40.000 14.32 1.30 34.07 4.81
4462 6370 3.763057 ACAAGAGGTACATTTTGGGGAC 58.237 45.455 14.32 0.00 0.00 4.46
4463 6371 3.139397 ACAAGAGGTACATTTTGGGGACA 59.861 43.478 14.32 0.00 39.83 4.02
4464 6372 4.202673 ACAAGAGGTACATTTTGGGGACAT 60.203 41.667 14.32 0.00 42.32 3.06
4481 6389 4.627035 GGGACATTTTCAATTTGTAGCAGC 59.373 41.667 0.00 0.00 0.00 5.25
4498 6407 0.036010 AGCGAGTTCATCCACCAAGG 60.036 55.000 0.00 0.00 39.47 3.61
4516 6425 7.232118 ACCAAGGTGATTAGAAAAAGGATTG 57.768 36.000 0.00 0.00 0.00 2.67
4536 6445 2.817258 TGGTACAAAGAAGGCATTTCCG 59.183 45.455 0.00 0.00 35.60 4.30
4537 6446 2.415491 GGTACAAAGAAGGCATTTCCGC 60.415 50.000 0.00 0.00 40.77 5.54
4547 6458 1.135141 GGCATTTCCGCATGTAAGCAA 60.135 47.619 0.00 0.00 0.00 3.91
4551 6462 3.485947 TTTCCGCATGTAAGCAATGTC 57.514 42.857 0.00 0.00 0.00 3.06
4557 6468 4.439153 CCGCATGTAAGCAATGTCTCAATT 60.439 41.667 0.00 0.00 0.00 2.32
4574 6485 8.762645 TGTCTCAATTAGAATTAGATGTGAGGT 58.237 33.333 0.00 0.00 35.47 3.85
4580 6518 9.751542 AATTAGAATTAGATGTGAGGTAGAACG 57.248 33.333 0.00 0.00 0.00 3.95
4601 6539 7.822334 AGAACGTTTGTCAGATATTGGTCATTA 59.178 33.333 0.46 0.00 0.00 1.90
4644 6582 4.163441 TGAGTGACAATCCCAAAGTCAA 57.837 40.909 0.00 0.00 43.16 3.18
4655 6593 3.069443 TCCCAAAGTCAACAAGGCATTTC 59.931 43.478 0.00 0.00 0.00 2.17
4671 6609 2.196997 TTTCCGCCTCCATGGACCTG 62.197 60.000 11.44 0.67 38.35 4.00
4673 6611 2.671070 CGCCTCCATGGACCTGTT 59.329 61.111 11.44 0.00 38.35 3.16
4676 6614 1.751437 GCCTCCATGGACCTGTTAAC 58.249 55.000 11.44 0.00 38.35 2.01
4683 6621 5.074115 TCCATGGACCTGTTAACGAAAAAT 58.926 37.500 11.44 0.00 0.00 1.82
4686 6624 6.804783 CCATGGACCTGTTAACGAAAAATAAC 59.195 38.462 5.56 0.00 33.59 1.89
4687 6625 6.316440 TGGACCTGTTAACGAAAAATAACC 57.684 37.500 0.26 0.00 32.31 2.85
4688 6626 5.049543 TGGACCTGTTAACGAAAAATAACCG 60.050 40.000 0.26 0.00 32.31 4.44
4705 6643 8.924511 AAATAACCGGATGATACAGATGATTT 57.075 30.769 9.46 0.00 0.00 2.17
4707 6645 6.867662 AACCGGATGATACAGATGATTTTC 57.132 37.500 9.46 0.00 0.00 2.29
4712 6650 7.332926 CCGGATGATACAGATGATTTTCCTAAG 59.667 40.741 0.00 0.00 0.00 2.18
4788 6726 4.636249 TCTTTCTCTCAGCAAGAACTTCC 58.364 43.478 0.00 0.00 32.64 3.46
4802 6740 0.889186 ACTTCCATGAACCGGTGTGC 60.889 55.000 8.52 0.77 0.00 4.57
5070 7009 2.278596 CTCACATACCGACCCGCG 60.279 66.667 0.00 0.00 40.47 6.46
5320 7289 5.804639 TGCAGGATATGTTTGTTGTAGACT 58.195 37.500 0.00 0.00 0.00 3.24
5321 7290 6.237901 TGCAGGATATGTTTGTTGTAGACTT 58.762 36.000 0.00 0.00 0.00 3.01
5322 7291 6.149308 TGCAGGATATGTTTGTTGTAGACTTG 59.851 38.462 0.00 0.00 0.00 3.16
5323 7292 6.149474 GCAGGATATGTTTGTTGTAGACTTGT 59.851 38.462 0.00 0.00 0.00 3.16
5324 7293 7.333423 GCAGGATATGTTTGTTGTAGACTTGTA 59.667 37.037 0.00 0.00 0.00 2.41
5325 7294 8.873830 CAGGATATGTTTGTTGTAGACTTGTAG 58.126 37.037 0.00 0.00 0.00 2.74
5326 7295 8.812972 AGGATATGTTTGTTGTAGACTTGTAGA 58.187 33.333 0.00 0.00 0.00 2.59
5327 7296 8.870879 GGATATGTTTGTTGTAGACTTGTAGAC 58.129 37.037 0.00 0.00 0.00 2.59
5347 7317 3.877508 GACTTAAAAGAGTGTGCTGGTGT 59.122 43.478 0.00 0.00 0.00 4.16
5838 7811 8.472007 AATGTTGTATACTTTTCTTTGGGACA 57.528 30.769 4.17 0.00 0.00 4.02
5851 7824 2.124570 GGACATCATGCGGTGCCT 60.125 61.111 0.00 0.00 0.00 4.75
5861 7834 1.240641 TGCGGTGCCTTATGGTTGTG 61.241 55.000 0.00 0.00 35.27 3.33
5883 7856 2.945447 TGCAGCAAATTCTACATGCC 57.055 45.000 0.00 0.00 40.93 4.40
5900 7873 1.409064 TGCCGATAGTTACTGCTCCAG 59.591 52.381 0.00 0.00 37.52 3.86
5903 7876 2.294791 CCGATAGTTACTGCTCCAGGAG 59.705 54.545 12.81 12.81 39.57 3.69
5911 7884 2.042025 GCTCCAGGAGCCTCCTCT 60.042 66.667 29.22 0.00 45.66 3.69
5976 7949 4.126437 TGTTTTTCTGTCGAGCTGAATGA 58.874 39.130 0.00 0.00 35.47 2.57
6017 7995 4.470334 AAAAAGCTTGTTTTCCTCTGCA 57.530 36.364 0.00 0.00 0.00 4.41
6018 7996 4.470334 AAAAGCTTGTTTTCCTCTGCAA 57.530 36.364 0.00 0.00 0.00 4.08
6069 8047 6.929606 GGTTAATCCTTACTACGCATCTTCAT 59.070 38.462 0.00 0.00 0.00 2.57
6104 8082 4.630894 AAAAAGACGTGCATGTTTCTGA 57.369 36.364 13.92 0.00 0.00 3.27
6105 8083 4.836125 AAAAGACGTGCATGTTTCTGAT 57.164 36.364 13.92 0.00 0.00 2.90
6106 8084 3.818961 AAGACGTGCATGTTTCTGATG 57.181 42.857 13.92 0.00 0.00 3.07
6107 8085 3.044235 AGACGTGCATGTTTCTGATGA 57.956 42.857 13.92 0.00 0.00 2.92
6108 8086 2.998670 AGACGTGCATGTTTCTGATGAG 59.001 45.455 13.92 0.00 0.00 2.90
6109 8087 2.079158 ACGTGCATGTTTCTGATGAGG 58.921 47.619 5.51 0.00 0.00 3.86
6110 8088 2.079158 CGTGCATGTTTCTGATGAGGT 58.921 47.619 0.00 0.00 0.00 3.85
6111 8089 2.094894 CGTGCATGTTTCTGATGAGGTC 59.905 50.000 0.00 0.00 0.00 3.85
6112 8090 3.341823 GTGCATGTTTCTGATGAGGTCT 58.658 45.455 0.00 0.00 0.00 3.85
6113 8091 3.126514 GTGCATGTTTCTGATGAGGTCTG 59.873 47.826 0.00 0.00 0.00 3.51
6114 8092 3.008266 TGCATGTTTCTGATGAGGTCTGA 59.992 43.478 0.00 0.00 33.54 3.27
6115 8093 4.005650 GCATGTTTCTGATGAGGTCTGAA 58.994 43.478 0.00 0.00 41.33 3.02
6116 8094 4.094590 GCATGTTTCTGATGAGGTCTGAAG 59.905 45.833 0.00 0.00 43.06 3.02
6117 8095 4.963318 TGTTTCTGATGAGGTCTGAAGT 57.037 40.909 0.00 0.00 43.06 3.01
6118 8096 4.887748 TGTTTCTGATGAGGTCTGAAGTC 58.112 43.478 0.00 0.00 43.06 3.01
6119 8097 4.590647 TGTTTCTGATGAGGTCTGAAGTCT 59.409 41.667 0.00 0.00 43.06 3.24
6120 8098 5.070981 TGTTTCTGATGAGGTCTGAAGTCTT 59.929 40.000 0.00 0.00 43.06 3.01
6121 8099 4.797800 TCTGATGAGGTCTGAAGTCTTG 57.202 45.455 0.00 0.00 32.58 3.02
6122 8100 4.155709 TCTGATGAGGTCTGAAGTCTTGT 58.844 43.478 0.00 0.00 32.58 3.16
6123 8101 4.590647 TCTGATGAGGTCTGAAGTCTTGTT 59.409 41.667 0.00 0.00 32.58 2.83
6124 8102 4.635223 TGATGAGGTCTGAAGTCTTGTTG 58.365 43.478 0.00 0.00 0.00 3.33
6125 8103 4.101585 TGATGAGGTCTGAAGTCTTGTTGT 59.898 41.667 0.00 0.00 0.00 3.32
6126 8104 5.304357 TGATGAGGTCTGAAGTCTTGTTGTA 59.696 40.000 0.00 0.00 0.00 2.41
6127 8105 5.607939 TGAGGTCTGAAGTCTTGTTGTAA 57.392 39.130 0.00 0.00 0.00 2.41
6128 8106 5.984725 TGAGGTCTGAAGTCTTGTTGTAAA 58.015 37.500 0.00 0.00 0.00 2.01
6145 8123 5.132897 TGTAAACACAATGGAAGAATGGC 57.867 39.130 0.00 0.00 0.00 4.40
6146 8124 4.832266 TGTAAACACAATGGAAGAATGGCT 59.168 37.500 0.00 0.00 0.00 4.75
6147 8125 6.007076 TGTAAACACAATGGAAGAATGGCTA 58.993 36.000 0.00 0.00 0.00 3.93
6148 8126 5.391312 AAACACAATGGAAGAATGGCTAC 57.609 39.130 0.00 0.00 0.00 3.58
6149 8127 3.009723 ACACAATGGAAGAATGGCTACG 58.990 45.455 0.00 0.00 0.00 3.51
6150 8128 2.017049 ACAATGGAAGAATGGCTACGC 58.983 47.619 0.00 0.00 0.00 4.42
6151 8129 2.292267 CAATGGAAGAATGGCTACGCT 58.708 47.619 0.00 0.00 0.00 5.07
6152 8130 3.118408 ACAATGGAAGAATGGCTACGCTA 60.118 43.478 0.00 0.00 0.00 4.26
6153 8131 2.890808 TGGAAGAATGGCTACGCTAG 57.109 50.000 0.00 0.00 0.00 3.42
6154 8132 2.384828 TGGAAGAATGGCTACGCTAGA 58.615 47.619 0.00 0.00 0.00 2.43
6155 8133 2.362397 TGGAAGAATGGCTACGCTAGAG 59.638 50.000 0.00 0.00 0.00 2.43
6156 8134 2.399448 GAAGAATGGCTACGCTAGAGC 58.601 52.381 0.00 0.00 39.33 4.09
6157 8135 1.698506 AGAATGGCTACGCTAGAGCT 58.301 50.000 0.00 0.00 39.98 4.09
6158 8136 2.035632 AGAATGGCTACGCTAGAGCTT 58.964 47.619 0.00 0.00 39.98 3.74
6159 8137 2.432510 AGAATGGCTACGCTAGAGCTTT 59.567 45.455 0.00 0.00 39.98 3.51
6160 8138 2.517650 ATGGCTACGCTAGAGCTTTC 57.482 50.000 0.00 0.00 39.98 2.62
6161 8139 1.182667 TGGCTACGCTAGAGCTTTCA 58.817 50.000 0.00 0.00 39.98 2.69
6162 8140 1.135083 TGGCTACGCTAGAGCTTTCAC 60.135 52.381 0.00 0.00 39.98 3.18
6163 8141 1.135333 GGCTACGCTAGAGCTTTCACT 59.865 52.381 0.00 0.00 39.98 3.41
6164 8142 2.189342 GCTACGCTAGAGCTTTCACTG 58.811 52.381 0.00 0.00 39.32 3.66
6165 8143 2.189342 CTACGCTAGAGCTTTCACTGC 58.811 52.381 0.00 0.00 39.32 4.40
6166 8144 0.318441 ACGCTAGAGCTTTCACTGCA 59.682 50.000 0.00 0.00 39.32 4.41
6167 8145 1.270305 ACGCTAGAGCTTTCACTGCAA 60.270 47.619 0.00 0.00 39.32 4.08
6168 8146 1.392853 CGCTAGAGCTTTCACTGCAAG 59.607 52.381 0.00 0.00 39.32 4.01
6169 8147 2.421619 GCTAGAGCTTTCACTGCAAGT 58.578 47.619 0.00 0.00 43.71 3.16
6170 8148 3.589988 GCTAGAGCTTTCACTGCAAGTA 58.410 45.455 0.00 0.00 41.74 2.24
6171 8149 3.997021 GCTAGAGCTTTCACTGCAAGTAA 59.003 43.478 0.00 0.00 41.74 2.24
6172 8150 4.143009 GCTAGAGCTTTCACTGCAAGTAAC 60.143 45.833 0.00 0.00 41.74 2.50
6173 8151 6.534005 GCTAGAGCTTTCACTGCAAGTAACA 61.534 44.000 0.00 0.00 41.74 2.41
6174 8152 7.781420 GCTAGAGCTTTCACTGCAAGTAACAT 61.781 42.308 0.00 0.00 41.74 2.71
6175 8153 9.459803 GCTAGAGCTTTCACTGCAAGTAACATC 62.460 44.444 0.00 0.00 41.74 3.06
6181 8159 1.825090 CTGCAAGTAACATCCAGCCA 58.175 50.000 0.00 0.00 0.00 4.75
6182 8160 2.372264 CTGCAAGTAACATCCAGCCAT 58.628 47.619 0.00 0.00 0.00 4.40
6183 8161 2.756760 CTGCAAGTAACATCCAGCCATT 59.243 45.455 0.00 0.00 0.00 3.16
6184 8162 2.492881 TGCAAGTAACATCCAGCCATTG 59.507 45.455 0.00 0.00 0.00 2.82
6185 8163 2.754552 GCAAGTAACATCCAGCCATTGA 59.245 45.455 0.00 0.00 0.00 2.57
6186 8164 3.193267 GCAAGTAACATCCAGCCATTGAA 59.807 43.478 0.00 0.00 0.00 2.69
6187 8165 4.142093 GCAAGTAACATCCAGCCATTGAAT 60.142 41.667 0.00 0.00 0.00 2.57
6188 8166 5.625197 GCAAGTAACATCCAGCCATTGAATT 60.625 40.000 0.00 0.00 0.00 2.17
6189 8167 6.400568 CAAGTAACATCCAGCCATTGAATTT 58.599 36.000 0.00 0.00 0.00 1.82
6190 8168 6.212888 AGTAACATCCAGCCATTGAATTTC 57.787 37.500 0.00 0.00 0.00 2.17
6191 8169 5.954150 AGTAACATCCAGCCATTGAATTTCT 59.046 36.000 0.00 0.00 0.00 2.52
6192 8170 5.750352 AACATCCAGCCATTGAATTTCTT 57.250 34.783 0.00 0.00 0.00 2.52
6193 8171 5.080969 ACATCCAGCCATTGAATTTCTTG 57.919 39.130 0.00 0.00 0.00 3.02
6194 8172 4.529377 ACATCCAGCCATTGAATTTCTTGT 59.471 37.500 0.00 0.00 0.00 3.16
6195 8173 4.524316 TCCAGCCATTGAATTTCTTGTG 57.476 40.909 0.00 0.00 0.00 3.33
6196 8174 3.258872 TCCAGCCATTGAATTTCTTGTGG 59.741 43.478 9.49 9.49 0.00 4.17
6200 8178 3.328505 CCATTGAATTTCTTGTGGCACC 58.671 45.455 16.26 0.00 0.00 5.01
6201 8179 3.244146 CCATTGAATTTCTTGTGGCACCA 60.244 43.478 16.26 2.56 0.00 4.17
6202 8180 4.378774 CATTGAATTTCTTGTGGCACCAA 58.621 39.130 16.26 9.51 0.00 3.67
6203 8181 3.451141 TGAATTTCTTGTGGCACCAAC 57.549 42.857 16.26 0.00 0.00 3.77
6204 8182 2.762887 TGAATTTCTTGTGGCACCAACA 59.237 40.909 16.26 0.00 0.00 3.33
6205 8183 3.181477 TGAATTTCTTGTGGCACCAACAG 60.181 43.478 16.26 6.06 0.00 3.16
6206 8184 0.459489 TTTCTTGTGGCACCAACAGC 59.541 50.000 16.26 0.00 0.00 4.40
6221 8199 2.664402 ACAGCCATTGTTGAGGTTCT 57.336 45.000 0.00 0.00 36.31 3.01
6222 8200 3.788227 ACAGCCATTGTTGAGGTTCTA 57.212 42.857 0.00 0.00 36.31 2.10
6223 8201 4.307032 ACAGCCATTGTTGAGGTTCTAT 57.693 40.909 0.00 0.00 36.31 1.98
6224 8202 4.265073 ACAGCCATTGTTGAGGTTCTATC 58.735 43.478 0.00 0.00 36.31 2.08
6225 8203 3.310774 CAGCCATTGTTGAGGTTCTATCG 59.689 47.826 0.00 0.00 0.00 2.92
6226 8204 3.055094 AGCCATTGTTGAGGTTCTATCGT 60.055 43.478 0.00 0.00 0.00 3.73
6227 8205 3.063997 GCCATTGTTGAGGTTCTATCGTG 59.936 47.826 0.00 0.00 0.00 4.35
6228 8206 4.253685 CCATTGTTGAGGTTCTATCGTGT 58.746 43.478 0.00 0.00 0.00 4.49
6229 8207 4.695455 CCATTGTTGAGGTTCTATCGTGTT 59.305 41.667 0.00 0.00 0.00 3.32
6230 8208 5.390885 CCATTGTTGAGGTTCTATCGTGTTG 60.391 44.000 0.00 0.00 0.00 3.33
6231 8209 4.330944 TGTTGAGGTTCTATCGTGTTGT 57.669 40.909 0.00 0.00 0.00 3.32
6232 8210 4.055360 TGTTGAGGTTCTATCGTGTTGTG 58.945 43.478 0.00 0.00 0.00 3.33
6233 8211 4.056050 GTTGAGGTTCTATCGTGTTGTGT 58.944 43.478 0.00 0.00 0.00 3.72
6234 8212 3.649073 TGAGGTTCTATCGTGTTGTGTG 58.351 45.455 0.00 0.00 0.00 3.82
6235 8213 3.069016 TGAGGTTCTATCGTGTTGTGTGT 59.931 43.478 0.00 0.00 0.00 3.72
6236 8214 3.650139 AGGTTCTATCGTGTTGTGTGTC 58.350 45.455 0.00 0.00 0.00 3.67
6237 8215 3.321111 AGGTTCTATCGTGTTGTGTGTCT 59.679 43.478 0.00 0.00 0.00 3.41
6238 8216 3.428870 GGTTCTATCGTGTTGTGTGTCTG 59.571 47.826 0.00 0.00 0.00 3.51
6239 8217 2.672714 TCTATCGTGTTGTGTGTCTGC 58.327 47.619 0.00 0.00 0.00 4.26
6240 8218 2.296190 TCTATCGTGTTGTGTGTCTGCT 59.704 45.455 0.00 0.00 0.00 4.24
6241 8219 1.220529 ATCGTGTTGTGTGTCTGCTG 58.779 50.000 0.00 0.00 0.00 4.41
6242 8220 0.108377 TCGTGTTGTGTGTCTGCTGT 60.108 50.000 0.00 0.00 0.00 4.40
6243 8221 1.135333 TCGTGTTGTGTGTCTGCTGTA 59.865 47.619 0.00 0.00 0.00 2.74
6244 8222 1.522676 CGTGTTGTGTGTCTGCTGTAG 59.477 52.381 0.00 0.00 0.00 2.74
6245 8223 2.550978 GTGTTGTGTGTCTGCTGTAGT 58.449 47.619 0.00 0.00 0.00 2.73
6246 8224 2.936498 GTGTTGTGTGTCTGCTGTAGTT 59.064 45.455 0.00 0.00 0.00 2.24
6247 8225 2.935849 TGTTGTGTGTCTGCTGTAGTTG 59.064 45.455 0.00 0.00 0.00 3.16
6248 8226 2.238942 TGTGTGTCTGCTGTAGTTGG 57.761 50.000 0.00 0.00 0.00 3.77
6249 8227 1.202639 TGTGTGTCTGCTGTAGTTGGG 60.203 52.381 0.00 0.00 0.00 4.12
6250 8228 1.128200 TGTGTCTGCTGTAGTTGGGT 58.872 50.000 0.00 0.00 0.00 4.51
6251 8229 1.202639 TGTGTCTGCTGTAGTTGGGTG 60.203 52.381 0.00 0.00 0.00 4.61
6252 8230 0.396435 TGTCTGCTGTAGTTGGGTGG 59.604 55.000 0.00 0.00 0.00 4.61
6253 8231 0.396811 GTCTGCTGTAGTTGGGTGGT 59.603 55.000 0.00 0.00 0.00 4.16
6254 8232 0.396435 TCTGCTGTAGTTGGGTGGTG 59.604 55.000 0.00 0.00 0.00 4.17
6255 8233 0.606401 CTGCTGTAGTTGGGTGGTGG 60.606 60.000 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.320714 GGAGGATTTGGTACACCGAAAAAC 60.321 45.833 5.17 0.00 42.37 2.43
12 13 2.288666 CATGGAGGATTTGGTACACCG 58.711 52.381 0.00 0.00 39.29 4.94
81 83 3.611766 AAAGGCTAATCGTGTAGCTGT 57.388 42.857 16.10 5.39 44.94 4.40
82 84 6.700081 TGTATAAAAGGCTAATCGTGTAGCTG 59.300 38.462 16.10 0.00 44.94 4.24
83 85 6.812998 TGTATAAAAGGCTAATCGTGTAGCT 58.187 36.000 16.10 0.00 44.94 3.32
120 122 9.699703 GAGAAATTCAGTCCTTGGATATACTAC 57.300 37.037 0.00 0.00 0.00 2.73
121 123 9.661954 AGAGAAATTCAGTCCTTGGATATACTA 57.338 33.333 0.00 0.00 0.00 1.82
122 124 8.428063 CAGAGAAATTCAGTCCTTGGATATACT 58.572 37.037 0.00 0.00 0.00 2.12
129 141 4.823989 ACAACAGAGAAATTCAGTCCTTGG 59.176 41.667 0.00 0.00 0.00 3.61
210 411 2.185262 CGACATTCATCGACACGACAT 58.815 47.619 0.00 0.00 45.13 3.06
213 414 0.179148 CCCGACATTCATCGACACGA 60.179 55.000 0.00 0.00 45.13 4.35
214 415 0.179148 TCCCGACATTCATCGACACG 60.179 55.000 0.00 0.00 45.13 4.49
215 416 2.128035 GATCCCGACATTCATCGACAC 58.872 52.381 0.00 0.00 45.13 3.67
216 417 1.269051 CGATCCCGACATTCATCGACA 60.269 52.381 0.00 0.00 45.13 4.35
217 418 1.409412 CGATCCCGACATTCATCGAC 58.591 55.000 0.00 0.00 45.13 4.20
218 419 0.313987 CCGATCCCGACATTCATCGA 59.686 55.000 1.83 0.00 45.13 3.59
224 425 2.288666 CATTGAACCGATCCCGACATT 58.711 47.619 0.00 0.00 38.22 2.71
226 427 0.107897 CCATTGAACCGATCCCGACA 60.108 55.000 0.00 0.00 38.22 4.35
236 437 3.447742 GCGATCCAATTTCCATTGAACC 58.552 45.455 0.00 0.00 42.35 3.62
237 438 3.131046 AGGCGATCCAATTTCCATTGAAC 59.869 43.478 0.00 0.00 42.35 3.18
564 772 2.181975 CCCCAACTGAATCCAGCAAAT 58.818 47.619 0.00 0.00 44.16 2.32
573 781 2.355115 GTCCGCCCCCAACTGAAT 59.645 61.111 0.00 0.00 0.00 2.57
661 873 2.606308 CCCGTATACTGTATCCGTGTGC 60.606 54.545 11.08 0.00 0.00 4.57
693 909 7.864379 GGATTCATAAAGGCAACATATCTTGTG 59.136 37.037 0.00 0.00 38.99 3.33
694 910 7.560991 TGGATTCATAAAGGCAACATATCTTGT 59.439 33.333 0.00 0.00 41.53 3.16
695 911 7.944061 TGGATTCATAAAGGCAACATATCTTG 58.056 34.615 0.00 0.00 41.41 3.02
718 934 2.746904 TGGTTTACGTGCAGATTGATGG 59.253 45.455 0.00 0.00 0.00 3.51
719 935 3.684305 TCTGGTTTACGTGCAGATTGATG 59.316 43.478 0.00 0.00 0.00 3.07
720 936 3.937814 TCTGGTTTACGTGCAGATTGAT 58.062 40.909 0.00 0.00 0.00 2.57
721 937 3.394674 TCTGGTTTACGTGCAGATTGA 57.605 42.857 0.00 0.00 0.00 2.57
722 938 4.213270 TCTTTCTGGTTTACGTGCAGATTG 59.787 41.667 0.00 0.00 0.00 2.67
723 939 4.385825 TCTTTCTGGTTTACGTGCAGATT 58.614 39.130 0.00 0.00 0.00 2.40
803 1019 2.548295 GCGCGTTTCAGGGGAACAA 61.548 57.895 8.43 0.00 31.35 2.83
804 1020 2.975799 GCGCGTTTCAGGGGAACA 60.976 61.111 8.43 0.00 31.35 3.18
869 1100 4.162690 GCAGACGGGCGGAGGATT 62.163 66.667 0.00 0.00 0.00 3.01
881 1120 2.184579 GGGCGGTGTAGAGCAGAC 59.815 66.667 0.00 0.00 34.54 3.51
908 1147 3.270092 CGTCGATCTCGGAGCCGA 61.270 66.667 11.55 11.55 46.87 5.54
909 1148 4.965858 GCGTCGATCTCGGAGCCG 62.966 72.222 1.74 1.74 40.29 5.52
911 1150 4.965858 CGGCGTCGATCTCGGAGC 62.966 72.222 1.44 10.25 40.29 4.70
912 1151 3.509296 GACGGCGTCGATCTCGGAG 62.509 68.421 25.42 0.00 40.29 4.63
913 1152 3.570638 GACGGCGTCGATCTCGGA 61.571 66.667 25.42 0.00 40.29 4.55
914 1153 4.609247 GGACGGCGTCGATCTCGG 62.609 72.222 31.02 0.00 40.29 4.63
963 1209 4.154347 CAGAGGAGGTGCCGGAGC 62.154 72.222 5.05 0.00 43.43 4.70
964 1210 2.681778 ACAGAGGAGGTGCCGGAG 60.682 66.667 5.05 0.00 43.43 4.63
1184 1445 3.353836 CTTTGCCGTCCGGGTGTG 61.354 66.667 7.97 0.00 38.44 3.82
1202 1465 1.467920 GTGATGCAGAAAGGAAGGGG 58.532 55.000 0.00 0.00 0.00 4.79
1245 1509 0.971386 GGGAGGTACAGTTTGACGGA 59.029 55.000 0.00 0.00 0.00 4.69
1289 1557 1.542915 GTTCTGCAACACAGCCATGAT 59.457 47.619 0.00 0.00 46.76 2.45
1298 1566 0.040958 CTCGCCAAGTTCTGCAACAC 60.041 55.000 0.00 0.00 34.60 3.32
1299 1567 1.165907 CCTCGCCAAGTTCTGCAACA 61.166 55.000 0.00 0.00 34.60 3.33
1602 1871 2.289631 ACTCGGAACTCAATGCACATCA 60.290 45.455 0.00 0.00 0.00 3.07
1640 1929 4.081972 CCATACTTGATCCTCTACATCCCG 60.082 50.000 0.00 0.00 0.00 5.14
1641 1930 4.223923 CCCATACTTGATCCTCTACATCCC 59.776 50.000 0.00 0.00 0.00 3.85
1782 2071 9.383462 GTTATGGCATAATCGTAGATATACTCG 57.617 37.037 21.82 0.00 45.12 4.18
1810 2099 0.108585 TCCAGACCAGGCAAACAGAC 59.891 55.000 0.00 0.00 0.00 3.51
1865 2161 9.388506 CAAATGATATAGAGGAAGTGAAGTTGT 57.611 33.333 0.00 0.00 0.00 3.32
1887 2183 8.585471 ATTTCTCACAGGAACATATGTCAAAT 57.415 30.769 9.23 0.00 0.00 2.32
1987 2284 8.356657 CCATTTTCAGATTAACTGTGTTAACCA 58.643 33.333 2.48 0.00 45.86 3.67
2089 2386 7.547227 ACAGAAGTAACCAAATAATTCATGGC 58.453 34.615 0.00 0.00 37.77 4.40
2339 2636 9.995003 ATGCCATTTTCAGATTTTAAAGTACAA 57.005 25.926 0.00 0.00 0.00 2.41
2348 2645 5.811399 CATGCATGCCATTTTCAGATTTT 57.189 34.783 14.93 0.00 29.71 1.82
2792 3103 9.007901 ACCAAATCATAAGCAGAATTATAGAGC 57.992 33.333 0.00 0.00 0.00 4.09
2863 3178 3.517296 TGAAATGGCTGGAAACTACCA 57.483 42.857 0.00 0.00 39.74 3.25
3404 3729 7.471721 TCAAATCGCATTTATAGAAGTTGGTG 58.528 34.615 0.00 0.00 0.00 4.17
3841 5023 1.133790 GTCCATCATGCTTGCCTGTTC 59.866 52.381 0.00 0.00 0.00 3.18
3846 5028 0.394762 TCTGGTCCATCATGCTTGCC 60.395 55.000 0.00 0.00 0.00 4.52
3851 5033 2.996249 TTCTCTCTGGTCCATCATGC 57.004 50.000 0.00 0.00 0.00 4.06
3852 5034 5.804944 AGTATTCTCTCTGGTCCATCATG 57.195 43.478 0.00 0.00 0.00 3.07
3859 5041 5.423015 TGATTGCAAGTATTCTCTCTGGTC 58.577 41.667 4.94 0.00 0.00 4.02
3876 5058 2.033801 GTGCACATACTGGGATGATTGC 59.966 50.000 13.17 1.18 32.29 3.56
3884 5066 4.040339 TCCTACATATGTGCACATACTGGG 59.960 45.833 35.53 30.68 41.15 4.45
3889 5071 6.670695 ATGACTCCTACATATGTGCACATA 57.329 37.500 35.03 35.03 42.38 2.29
3893 5075 7.016563 AGGAATTATGACTCCTACATATGTGCA 59.983 37.037 18.81 7.11 40.42 4.57
3896 5078 8.378565 CCAAGGAATTATGACTCCTACATATGT 58.621 37.037 13.93 13.93 41.40 2.29
3899 5081 8.597167 CATCCAAGGAATTATGACTCCTACATA 58.403 37.037 0.00 0.00 41.40 2.29
3906 5088 4.464008 TGCCATCCAAGGAATTATGACTC 58.536 43.478 0.00 0.00 0.00 3.36
4023 5208 9.709495 AACATAAACCGTTTGTCTACTGTATTA 57.291 29.630 6.77 0.00 0.00 0.98
4053 5238 1.079490 TCTCCTGACAATGTCCCTCCT 59.921 52.381 11.24 0.00 0.00 3.69
4082 5267 5.221244 GCCTTGTTCAGTAAGATGTTTTGGT 60.221 40.000 0.00 0.00 0.00 3.67
4083 5268 5.222631 GCCTTGTTCAGTAAGATGTTTTGG 58.777 41.667 0.00 0.00 0.00 3.28
4084 5269 5.221224 TGGCCTTGTTCAGTAAGATGTTTTG 60.221 40.000 3.32 0.00 0.00 2.44
4089 5997 4.264253 TGATGGCCTTGTTCAGTAAGATG 58.736 43.478 3.32 0.00 0.00 2.90
4097 6005 3.633525 GCTGATAATGATGGCCTTGTTCA 59.366 43.478 3.32 2.28 0.00 3.18
4113 6021 4.568072 TTTAAGCCACAAGGAGCTGATA 57.432 40.909 0.00 0.00 39.87 2.15
4156 6064 2.892334 GCGCTCGCTGTCACCAAAA 61.892 57.895 0.00 0.00 38.26 2.44
4191 6099 2.919229 CAAAAATGGCATCTTGTCTCGC 59.081 45.455 0.00 0.00 0.00 5.03
4202 6110 4.156739 GGTTGTTGGTTTTCAAAAATGGCA 59.843 37.500 0.00 0.00 35.27 4.92
4209 6117 5.422331 TGACCATAGGTTGTTGGTTTTCAAA 59.578 36.000 0.00 0.00 46.14 2.69
4210 6118 4.956700 TGACCATAGGTTGTTGGTTTTCAA 59.043 37.500 0.00 0.00 46.14 2.69
4211 6119 4.537751 TGACCATAGGTTGTTGGTTTTCA 58.462 39.130 0.00 0.00 46.14 2.69
4214 6122 5.941555 TTTTGACCATAGGTTGTTGGTTT 57.058 34.783 0.00 0.00 46.14 3.27
4229 6137 6.175712 TGCTTGTTTGTTTTCATTTTGACC 57.824 33.333 0.00 0.00 0.00 4.02
4230 6138 7.589221 TGTTTGCTTGTTTGTTTTCATTTTGAC 59.411 29.630 0.00 0.00 0.00 3.18
4239 6147 6.855403 GTGATGTTTGTTTGCTTGTTTGTTTT 59.145 30.769 0.00 0.00 0.00 2.43
4249 6157 3.865011 TGTGTGTGATGTTTGTTTGCT 57.135 38.095 0.00 0.00 0.00 3.91
4250 6158 5.748152 ACTATTGTGTGTGATGTTTGTTTGC 59.252 36.000 0.00 0.00 0.00 3.68
4251 6159 7.754069 AACTATTGTGTGTGATGTTTGTTTG 57.246 32.000 0.00 0.00 0.00 2.93
4254 6162 8.015087 CGATAAACTATTGTGTGTGATGTTTGT 58.985 33.333 0.00 0.00 0.00 2.83
4255 6163 7.481483 CCGATAAACTATTGTGTGTGATGTTTG 59.519 37.037 0.00 0.00 0.00 2.93
4257 6165 6.876789 TCCGATAAACTATTGTGTGTGATGTT 59.123 34.615 0.00 0.00 0.00 2.71
4259 6167 6.902224 TCCGATAAACTATTGTGTGTGATG 57.098 37.500 0.00 0.00 0.00 3.07
4260 6168 8.397906 CAATTCCGATAAACTATTGTGTGTGAT 58.602 33.333 0.00 0.00 0.00 3.06
4262 6170 7.481483 CACAATTCCGATAAACTATTGTGTGTG 59.519 37.037 14.74 0.00 45.35 3.82
4267 6175 6.150307 TGTGCACAATTCCGATAAACTATTGT 59.850 34.615 19.28 0.00 39.33 2.71
4268 6176 6.468956 GTGTGCACAATTCCGATAAACTATTG 59.531 38.462 23.59 0.00 33.55 1.90
4269 6177 6.404293 GGTGTGCACAATTCCGATAAACTATT 60.404 38.462 23.59 0.00 0.00 1.73
4270 6178 5.065988 GGTGTGCACAATTCCGATAAACTAT 59.934 40.000 23.59 0.00 0.00 2.12
4271 6179 4.393680 GGTGTGCACAATTCCGATAAACTA 59.606 41.667 23.59 0.00 0.00 2.24
4272 6180 3.190535 GGTGTGCACAATTCCGATAAACT 59.809 43.478 23.59 0.00 0.00 2.66
4273 6181 3.057876 TGGTGTGCACAATTCCGATAAAC 60.058 43.478 23.59 3.97 0.00 2.01
4274 6182 3.057876 GTGGTGTGCACAATTCCGATAAA 60.058 43.478 23.59 0.00 0.00 1.40
4277 6185 0.881118 GTGGTGTGCACAATTCCGAT 59.119 50.000 23.59 0.00 0.00 4.18
4280 6188 2.504367 ACTAGTGGTGTGCACAATTCC 58.496 47.619 23.59 19.24 0.00 3.01
4302 6210 9.967346 CGAGTACTTCCAAATCTAAGATATCAA 57.033 33.333 5.32 0.00 0.00 2.57
4328 6236 8.716909 GCTACTAAATTTCCTCTATCTGCATTC 58.283 37.037 0.00 0.00 0.00 2.67
4377 6285 1.118838 GATCCCCTGGACAGTCTGAG 58.881 60.000 6.91 0.00 32.98 3.35
4424 6332 5.235850 TCTTGTATCAAAGGTGCCAACTA 57.764 39.130 0.00 0.00 0.00 2.24
4431 6339 7.687941 AAATGTACCTCTTGTATCAAAGGTG 57.312 36.000 17.66 0.65 42.08 4.00
4451 6359 7.274603 ACAAATTGAAAATGTCCCCAAAATG 57.725 32.000 0.00 0.00 0.00 2.32
4453 6361 6.484977 GCTACAAATTGAAAATGTCCCCAAAA 59.515 34.615 0.00 0.00 0.00 2.44
4456 6364 4.590647 TGCTACAAATTGAAAATGTCCCCA 59.409 37.500 0.00 0.00 0.00 4.96
4460 6368 5.153513 TCGCTGCTACAAATTGAAAATGTC 58.846 37.500 0.00 0.00 0.00 3.06
4461 6369 5.119931 TCGCTGCTACAAATTGAAAATGT 57.880 34.783 0.00 0.00 0.00 2.71
4462 6370 5.156355 ACTCGCTGCTACAAATTGAAAATG 58.844 37.500 0.00 0.00 0.00 2.32
4463 6371 5.376854 ACTCGCTGCTACAAATTGAAAAT 57.623 34.783 0.00 0.00 0.00 1.82
4464 6372 4.829064 ACTCGCTGCTACAAATTGAAAA 57.171 36.364 0.00 0.00 0.00 2.29
4481 6389 1.001974 TCACCTTGGTGGATGAACTCG 59.998 52.381 18.45 0.00 39.71 4.18
4498 6407 9.626045 CTTTGTACCAATCCTTTTTCTAATCAC 57.374 33.333 0.00 0.00 0.00 3.06
4516 6425 2.415491 GCGGAAATGCCTTCTTTGTACC 60.415 50.000 0.00 0.00 34.17 3.34
4528 6437 2.276472 TTGCTTACATGCGGAAATGC 57.724 45.000 0.00 0.00 35.36 3.56
4531 6440 3.081061 AGACATTGCTTACATGCGGAAA 58.919 40.909 0.00 0.00 35.36 3.13
4533 6442 2.279741 GAGACATTGCTTACATGCGGA 58.720 47.619 0.00 0.00 35.36 5.54
4534 6443 2.009051 TGAGACATTGCTTACATGCGG 58.991 47.619 0.00 0.00 35.36 5.69
4535 6444 3.745332 TTGAGACATTGCTTACATGCG 57.255 42.857 0.00 0.00 35.36 4.73
4536 6445 7.019774 TCTAATTGAGACATTGCTTACATGC 57.980 36.000 0.00 0.00 0.00 4.06
4547 6458 9.775854 CCTCACATCTAATTCTAATTGAGACAT 57.224 33.333 7.52 0.00 32.31 3.06
4557 6468 7.876936 ACGTTCTACCTCACATCTAATTCTA 57.123 36.000 0.00 0.00 0.00 2.10
4571 6482 6.106673 CCAATATCTGACAAACGTTCTACCT 58.893 40.000 0.00 0.00 0.00 3.08
4574 6485 6.693466 TGACCAATATCTGACAAACGTTCTA 58.307 36.000 0.00 0.00 0.00 2.10
4616 6554 3.411446 TGGGATTGTCACTCAATGTGTC 58.589 45.455 0.00 0.00 45.49 3.67
4655 6593 1.622607 TAACAGGTCCATGGAGGCGG 61.623 60.000 16.81 7.88 37.29 6.13
4659 6597 3.328382 TTCGTTAACAGGTCCATGGAG 57.672 47.619 16.81 6.28 0.00 3.86
4671 6609 8.389603 TGTATCATCCGGTTATTTTTCGTTAAC 58.610 33.333 0.00 0.00 0.00 2.01
4673 6611 7.980662 TCTGTATCATCCGGTTATTTTTCGTTA 59.019 33.333 0.00 0.00 0.00 3.18
4676 6614 6.838198 TCTGTATCATCCGGTTATTTTTCG 57.162 37.500 0.00 0.00 0.00 3.46
4683 6621 6.934645 GGAAAATCATCTGTATCATCCGGTTA 59.065 38.462 0.00 0.00 0.00 2.85
4686 6624 5.555017 AGGAAAATCATCTGTATCATCCGG 58.445 41.667 0.00 0.00 0.00 5.14
4687 6625 7.148507 GCTTAGGAAAATCATCTGTATCATCCG 60.149 40.741 0.00 0.00 0.00 4.18
4688 6626 7.882271 AGCTTAGGAAAATCATCTGTATCATCC 59.118 37.037 0.00 0.00 0.00 3.51
4721 6659 9.036671 GGTTCTAGAAGTTCTTATTGTATCTGC 57.963 37.037 11.40 0.00 0.00 4.26
4788 6726 2.689785 ATGCGCACACCGGTTCATG 61.690 57.895 14.90 4.93 37.44 3.07
4967 6905 1.909700 TGGATCTGGGCAGAAAACAC 58.090 50.000 0.00 0.00 41.36 3.32
5070 7009 1.128692 CTCTTTCGATGGAACCAACGC 59.871 52.381 16.49 1.20 41.04 4.84
5320 7289 5.758296 CCAGCACACTCTTTTAAGTCTACAA 59.242 40.000 0.00 0.00 0.00 2.41
5321 7290 5.163343 ACCAGCACACTCTTTTAAGTCTACA 60.163 40.000 0.00 0.00 0.00 2.74
5322 7291 5.177696 CACCAGCACACTCTTTTAAGTCTAC 59.822 44.000 0.00 0.00 0.00 2.59
5323 7292 5.163343 ACACCAGCACACTCTTTTAAGTCTA 60.163 40.000 0.00 0.00 0.00 2.59
5324 7293 4.130118 CACCAGCACACTCTTTTAAGTCT 58.870 43.478 0.00 0.00 0.00 3.24
5325 7294 3.877508 ACACCAGCACACTCTTTTAAGTC 59.122 43.478 0.00 0.00 0.00 3.01
5326 7295 3.627577 CACACCAGCACACTCTTTTAAGT 59.372 43.478 0.00 0.00 0.00 2.24
5327 7296 3.627577 ACACACCAGCACACTCTTTTAAG 59.372 43.478 0.00 0.00 0.00 1.85
5347 7317 3.069443 GGCTTCCAACCTTTGATTCAACA 59.931 43.478 0.00 0.00 0.00 3.33
5387 7357 3.425193 GCAATTCCACACGATTTTCACAC 59.575 43.478 0.00 0.00 0.00 3.82
5389 7359 3.637432 TGCAATTCCACACGATTTTCAC 58.363 40.909 0.00 0.00 0.00 3.18
5724 7695 3.641906 AGACGTTAATCCGGAATGATCCT 59.358 43.478 9.01 0.00 44.17 3.24
5829 7800 0.452987 CACCGCATGATGTCCCAAAG 59.547 55.000 0.00 0.00 0.00 2.77
5838 7811 0.183492 ACCATAAGGCACCGCATGAT 59.817 50.000 0.00 0.00 39.06 2.45
5883 7856 3.634568 CTCCTGGAGCAGTAACTATCG 57.365 52.381 11.42 0.00 0.00 2.92
5900 7873 1.843206 AGGAAATCAAGAGGAGGCTCC 59.157 52.381 26.42 26.42 36.58 4.70
5903 7876 2.751806 CACAAGGAAATCAAGAGGAGGC 59.248 50.000 0.00 0.00 0.00 4.70
5911 7884 2.627699 GTTCCAGCCACAAGGAAATCAA 59.372 45.455 0.00 0.00 44.88 2.57
5945 7918 5.717491 GCTCGACAGAAAAACAAAAACAACG 60.717 40.000 0.00 0.00 0.00 4.10
6016 7994 6.387041 AATGATATGCACTGAATGGAGTTG 57.613 37.500 0.00 0.00 28.84 3.16
6017 7995 6.604396 TGAAATGATATGCACTGAATGGAGTT 59.396 34.615 0.00 0.00 28.84 3.01
6018 7996 6.124340 TGAAATGATATGCACTGAATGGAGT 58.876 36.000 0.00 0.00 28.84 3.85
6088 8066 2.094894 CCTCATCAGAAACATGCACGTC 59.905 50.000 0.00 0.00 0.00 4.34
6089 8067 2.079158 CCTCATCAGAAACATGCACGT 58.921 47.619 0.00 0.00 0.00 4.49
6090 8068 2.079158 ACCTCATCAGAAACATGCACG 58.921 47.619 0.00 0.00 0.00 5.34
6091 8069 3.126514 CAGACCTCATCAGAAACATGCAC 59.873 47.826 0.00 0.00 0.00 4.57
6092 8070 3.008266 TCAGACCTCATCAGAAACATGCA 59.992 43.478 0.00 0.00 0.00 3.96
6093 8071 3.603532 TCAGACCTCATCAGAAACATGC 58.396 45.455 0.00 0.00 0.00 4.06
6094 8072 5.243981 ACTTCAGACCTCATCAGAAACATG 58.756 41.667 0.00 0.00 32.89 3.21
6095 8073 5.248020 AGACTTCAGACCTCATCAGAAACAT 59.752 40.000 0.00 0.00 32.89 2.71
6096 8074 4.590647 AGACTTCAGACCTCATCAGAAACA 59.409 41.667 0.00 0.00 32.89 2.83
6097 8075 5.146010 AGACTTCAGACCTCATCAGAAAC 57.854 43.478 0.00 0.00 32.89 2.78
6098 8076 5.070981 ACAAGACTTCAGACCTCATCAGAAA 59.929 40.000 0.00 0.00 32.89 2.52
6099 8077 4.590647 ACAAGACTTCAGACCTCATCAGAA 59.409 41.667 0.00 0.00 32.38 3.02
6100 8078 4.155709 ACAAGACTTCAGACCTCATCAGA 58.844 43.478 0.00 0.00 0.00 3.27
6101 8079 4.533919 ACAAGACTTCAGACCTCATCAG 57.466 45.455 0.00 0.00 0.00 2.90
6102 8080 4.101585 ACAACAAGACTTCAGACCTCATCA 59.898 41.667 0.00 0.00 0.00 3.07
6103 8081 4.636249 ACAACAAGACTTCAGACCTCATC 58.364 43.478 0.00 0.00 0.00 2.92
6104 8082 4.696479 ACAACAAGACTTCAGACCTCAT 57.304 40.909 0.00 0.00 0.00 2.90
6105 8083 5.607939 TTACAACAAGACTTCAGACCTCA 57.392 39.130 0.00 0.00 0.00 3.86
6106 8084 5.815740 TGTTTACAACAAGACTTCAGACCTC 59.184 40.000 0.00 0.00 38.72 3.85
6107 8085 5.585047 GTGTTTACAACAAGACTTCAGACCT 59.415 40.000 0.00 0.00 44.16 3.85
6108 8086 5.353123 TGTGTTTACAACAAGACTTCAGACC 59.647 40.000 0.00 0.00 44.16 3.85
6109 8087 6.417191 TGTGTTTACAACAAGACTTCAGAC 57.583 37.500 0.00 0.00 44.16 3.51
6123 8101 4.832266 AGCCATTCTTCCATTGTGTTTACA 59.168 37.500 0.00 0.00 34.31 2.41
6124 8102 5.391312 AGCCATTCTTCCATTGTGTTTAC 57.609 39.130 0.00 0.00 0.00 2.01
6125 8103 5.123186 CGTAGCCATTCTTCCATTGTGTTTA 59.877 40.000 0.00 0.00 0.00 2.01
6126 8104 4.082787 CGTAGCCATTCTTCCATTGTGTTT 60.083 41.667 0.00 0.00 0.00 2.83
6127 8105 3.440173 CGTAGCCATTCTTCCATTGTGTT 59.560 43.478 0.00 0.00 0.00 3.32
6128 8106 3.009723 CGTAGCCATTCTTCCATTGTGT 58.990 45.455 0.00 0.00 0.00 3.72
6129 8107 3.680642 CGTAGCCATTCTTCCATTGTG 57.319 47.619 0.00 0.00 0.00 3.33
6149 8127 2.421619 ACTTGCAGTGAAAGCTCTAGC 58.578 47.619 11.07 0.00 42.49 3.42
6150 8128 4.991056 TGTTACTTGCAGTGAAAGCTCTAG 59.009 41.667 11.07 0.00 0.00 2.43
6151 8129 4.956085 TGTTACTTGCAGTGAAAGCTCTA 58.044 39.130 11.07 0.00 0.00 2.43
6152 8130 3.808728 TGTTACTTGCAGTGAAAGCTCT 58.191 40.909 11.07 0.00 0.00 4.09
6153 8131 4.378874 GGATGTTACTTGCAGTGAAAGCTC 60.379 45.833 11.07 2.58 0.00 4.09
6154 8132 3.503748 GGATGTTACTTGCAGTGAAAGCT 59.496 43.478 11.07 1.33 0.00 3.74
6155 8133 3.253188 TGGATGTTACTTGCAGTGAAAGC 59.747 43.478 11.07 0.00 0.00 3.51
6156 8134 4.614535 GCTGGATGTTACTTGCAGTGAAAG 60.615 45.833 17.82 9.51 35.24 2.62
6157 8135 3.253188 GCTGGATGTTACTTGCAGTGAAA 59.747 43.478 17.82 0.00 35.24 2.69
6158 8136 2.813754 GCTGGATGTTACTTGCAGTGAA 59.186 45.455 17.82 0.00 35.24 3.18
6159 8137 2.426522 GCTGGATGTTACTTGCAGTGA 58.573 47.619 17.82 0.00 35.24 3.41
6160 8138 1.470098 GGCTGGATGTTACTTGCAGTG 59.530 52.381 17.82 0.00 35.24 3.66
6161 8139 1.073763 TGGCTGGATGTTACTTGCAGT 59.926 47.619 17.82 0.00 35.24 4.40
6162 8140 1.825090 TGGCTGGATGTTACTTGCAG 58.175 50.000 13.76 13.76 35.82 4.41
6163 8141 2.492881 CAATGGCTGGATGTTACTTGCA 59.507 45.455 0.00 0.00 0.00 4.08
6164 8142 2.754552 TCAATGGCTGGATGTTACTTGC 59.245 45.455 0.00 0.00 0.00 4.01
6165 8143 5.587388 ATTCAATGGCTGGATGTTACTTG 57.413 39.130 0.00 0.00 0.00 3.16
6166 8144 6.438425 AGAAATTCAATGGCTGGATGTTACTT 59.562 34.615 0.00 0.00 0.00 2.24
6167 8145 5.954150 AGAAATTCAATGGCTGGATGTTACT 59.046 36.000 0.00 0.00 0.00 2.24
6168 8146 6.212888 AGAAATTCAATGGCTGGATGTTAC 57.787 37.500 0.00 0.00 0.00 2.50
6169 8147 6.211184 ACAAGAAATTCAATGGCTGGATGTTA 59.789 34.615 0.00 0.00 0.00 2.41
6170 8148 5.012354 ACAAGAAATTCAATGGCTGGATGTT 59.988 36.000 0.00 0.00 0.00 2.71
6171 8149 4.529377 ACAAGAAATTCAATGGCTGGATGT 59.471 37.500 0.00 0.00 0.00 3.06
6172 8150 4.868171 CACAAGAAATTCAATGGCTGGATG 59.132 41.667 0.00 0.00 0.00 3.51
6173 8151 4.081309 CCACAAGAAATTCAATGGCTGGAT 60.081 41.667 0.00 0.00 0.00 3.41
6174 8152 3.258872 CCACAAGAAATTCAATGGCTGGA 59.741 43.478 0.00 0.00 0.00 3.86
6175 8153 3.592059 CCACAAGAAATTCAATGGCTGG 58.408 45.455 0.00 0.00 0.00 4.85
6179 8157 3.244146 TGGTGCCACAAGAAATTCAATGG 60.244 43.478 0.00 0.98 0.00 3.16
6180 8158 3.992643 TGGTGCCACAAGAAATTCAATG 58.007 40.909 0.00 0.00 0.00 2.82
6181 8159 4.141756 TGTTGGTGCCACAAGAAATTCAAT 60.142 37.500 0.00 0.00 0.00 2.57
6182 8160 3.196469 TGTTGGTGCCACAAGAAATTCAA 59.804 39.130 0.00 0.00 0.00 2.69
6183 8161 2.762887 TGTTGGTGCCACAAGAAATTCA 59.237 40.909 0.00 0.00 0.00 2.57
6184 8162 3.383761 CTGTTGGTGCCACAAGAAATTC 58.616 45.455 0.00 0.00 0.00 2.17
6185 8163 2.483538 GCTGTTGGTGCCACAAGAAATT 60.484 45.455 0.00 0.00 0.00 1.82
6186 8164 1.069049 GCTGTTGGTGCCACAAGAAAT 59.931 47.619 0.00 0.00 0.00 2.17
6187 8165 0.459489 GCTGTTGGTGCCACAAGAAA 59.541 50.000 0.00 0.00 0.00 2.52
6188 8166 2.114638 GCTGTTGGTGCCACAAGAA 58.885 52.632 0.00 0.00 0.00 2.52
6189 8167 3.840437 GCTGTTGGTGCCACAAGA 58.160 55.556 0.00 0.00 0.00 3.02
6195 8173 1.747774 AACAATGGCTGTTGGTGCC 59.252 52.632 7.82 0.00 46.80 5.01
6201 8179 6.598614 CGATAGAACCTCAACAATGGCTGTT 61.599 44.000 0.00 0.00 44.81 3.16
6202 8180 2.664402 AGAACCTCAACAATGGCTGT 57.336 45.000 0.00 0.00 41.27 4.40
6203 8181 3.310774 CGATAGAACCTCAACAATGGCTG 59.689 47.826 0.00 0.00 39.76 4.85
6204 8182 3.055094 ACGATAGAACCTCAACAATGGCT 60.055 43.478 0.00 0.00 41.38 4.75
6205 8183 3.063997 CACGATAGAACCTCAACAATGGC 59.936 47.826 0.00 0.00 41.38 4.40
6206 8184 4.253685 ACACGATAGAACCTCAACAATGG 58.746 43.478 0.00 0.00 41.38 3.16
6207 8185 5.179368 ACAACACGATAGAACCTCAACAATG 59.821 40.000 0.00 0.00 41.38 2.82
6208 8186 5.179368 CACAACACGATAGAACCTCAACAAT 59.821 40.000 0.00 0.00 41.38 2.71
6209 8187 4.509970 CACAACACGATAGAACCTCAACAA 59.490 41.667 0.00 0.00 41.38 2.83
6210 8188 4.055360 CACAACACGATAGAACCTCAACA 58.945 43.478 0.00 0.00 41.38 3.33
6211 8189 4.056050 ACACAACACGATAGAACCTCAAC 58.944 43.478 0.00 0.00 41.38 3.18
6212 8190 4.055360 CACACAACACGATAGAACCTCAA 58.945 43.478 0.00 0.00 41.38 3.02
6213 8191 3.069016 ACACACAACACGATAGAACCTCA 59.931 43.478 0.00 0.00 41.38 3.86
6214 8192 3.650139 ACACACAACACGATAGAACCTC 58.350 45.455 0.00 0.00 41.38 3.85
6215 8193 3.321111 AGACACACAACACGATAGAACCT 59.679 43.478 0.00 0.00 41.38 3.50
6216 8194 3.428870 CAGACACACAACACGATAGAACC 59.571 47.826 0.00 0.00 41.38 3.62
6217 8195 3.120991 GCAGACACACAACACGATAGAAC 60.121 47.826 0.00 0.00 41.38 3.01
6218 8196 3.057019 GCAGACACACAACACGATAGAA 58.943 45.455 0.00 0.00 41.38 2.10
6219 8197 2.296190 AGCAGACACACAACACGATAGA 59.704 45.455 0.00 0.00 41.38 1.98
6220 8198 2.409715 CAGCAGACACACAACACGATAG 59.590 50.000 0.00 0.00 46.19 2.08
6221 8199 2.223947 ACAGCAGACACACAACACGATA 60.224 45.455 0.00 0.00 0.00 2.92
6222 8200 1.220529 CAGCAGACACACAACACGAT 58.779 50.000 0.00 0.00 0.00 3.73
6223 8201 0.108377 ACAGCAGACACACAACACGA 60.108 50.000 0.00 0.00 0.00 4.35
6224 8202 1.522676 CTACAGCAGACACACAACACG 59.477 52.381 0.00 0.00 0.00 4.49
6225 8203 2.550978 ACTACAGCAGACACACAACAC 58.449 47.619 0.00 0.00 0.00 3.32
6226 8204 2.935849 CAACTACAGCAGACACACAACA 59.064 45.455 0.00 0.00 0.00 3.33
6227 8205 2.287915 CCAACTACAGCAGACACACAAC 59.712 50.000 0.00 0.00 0.00 3.32
6228 8206 2.560504 CCAACTACAGCAGACACACAA 58.439 47.619 0.00 0.00 0.00 3.33
6229 8207 1.202639 CCCAACTACAGCAGACACACA 60.203 52.381 0.00 0.00 0.00 3.72
6230 8208 1.202651 ACCCAACTACAGCAGACACAC 60.203 52.381 0.00 0.00 0.00 3.82
6231 8209 1.128200 ACCCAACTACAGCAGACACA 58.872 50.000 0.00 0.00 0.00 3.72
6232 8210 1.512926 CACCCAACTACAGCAGACAC 58.487 55.000 0.00 0.00 0.00 3.67
6233 8211 0.396435 CCACCCAACTACAGCAGACA 59.604 55.000 0.00 0.00 0.00 3.41
6234 8212 0.396811 ACCACCCAACTACAGCAGAC 59.603 55.000 0.00 0.00 0.00 3.51
6235 8213 0.396435 CACCACCCAACTACAGCAGA 59.604 55.000 0.00 0.00 0.00 4.26
6236 8214 0.606401 CCACCACCCAACTACAGCAG 60.606 60.000 0.00 0.00 0.00 4.24
6237 8215 1.454104 CCACCACCCAACTACAGCA 59.546 57.895 0.00 0.00 0.00 4.41
6238 8216 4.397348 CCACCACCCAACTACAGC 57.603 61.111 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.