Multiple sequence alignment - TraesCS1D01G427800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G427800 chr1D 100.000 8264 0 0 1 8264 480340541 480348804 0.000000e+00 15261.0
1 TraesCS1D01G427800 chr1A 94.909 5500 146 48 985 6429 576609051 576614471 0.000000e+00 8482.0
2 TraesCS1D01G427800 chr1A 91.852 1841 127 16 6434 8264 576614508 576616335 0.000000e+00 2547.0
3 TraesCS1D01G427800 chr1A 88.889 792 54 16 1 782 576605987 576606754 0.000000e+00 944.0
4 TraesCS1D01G427800 chr1A 86.966 468 34 14 345 804 576608211 576608659 1.240000e-137 501.0
5 TraesCS1D01G427800 chr1B 96.086 3577 110 11 2622 6188 668650373 668653929 0.000000e+00 5803.0
6 TraesCS1D01G427800 chr1B 84.045 2319 162 92 447 2625 668648060 668650310 0.000000e+00 2041.0
7 TraesCS1D01G427800 chr1B 89.289 999 74 19 6978 7963 668654780 668655758 0.000000e+00 1221.0
8 TraesCS1D01G427800 chr1B 94.790 787 33 6 6173 6957 668653948 668654728 0.000000e+00 1219.0
9 TraesCS1D01G427800 chr1B 87.347 245 26 4 1 244 668647821 668648061 8.170000e-70 276.0
10 TraesCS1D01G427800 chr1B 82.836 268 19 11 7997 8264 668655759 668655999 1.810000e-51 215.0
11 TraesCS1D01G427800 chr6B 88.309 1668 89 39 1000 2625 151861901 151860298 0.000000e+00 1903.0
12 TraesCS1D01G427800 chr6B 92.337 522 33 4 3032 3547 151859958 151859438 0.000000e+00 736.0
13 TraesCS1D01G427800 chr6B 91.155 407 27 5 1770 2174 553747670 553748069 2.030000e-150 544.0
14 TraesCS1D01G427800 chr6B 88.587 368 24 5 2192 2549 553748057 553748416 1.650000e-116 431.0
15 TraesCS1D01G427800 chr6B 94.485 272 13 2 2622 2892 151860237 151859967 1.280000e-112 418.0
16 TraesCS1D01G427800 chr6B 84.103 195 19 8 52 239 213229314 213229503 2.370000e-40 178.0
17 TraesCS1D01G427800 chr4A 88.295 1666 92 38 1000 2624 503857814 503859417 0.000000e+00 1901.0
18 TraesCS1D01G427800 chr4A 92.337 522 33 4 3032 3547 503859758 503860278 0.000000e+00 736.0
19 TraesCS1D01G427800 chr4A 88.579 394 40 4 4398 4789 460274202 460273812 2.700000e-129 473.0
20 TraesCS1D01G427800 chr4A 93.750 272 15 2 2622 2892 503859479 503859749 2.780000e-109 407.0
21 TraesCS1D01G427800 chr4A 85.455 110 14 2 3617 3725 476985424 476985316 6.780000e-21 113.0
22 TraesCS1D01G427800 chr7B 88.182 1667 94 37 1000 2625 599929495 599927891 0.000000e+00 1892.0
23 TraesCS1D01G427800 chr7B 91.379 522 38 4 3032 3547 599927549 599927029 0.000000e+00 708.0
24 TraesCS1D01G427800 chr7B 93.750 272 15 2 2622 2892 599927828 599927558 2.780000e-109 407.0
25 TraesCS1D01G427800 chr7A 87.740 1664 101 42 1000 2622 66856977 66858578 0.000000e+00 1847.0
26 TraesCS1D01G427800 chr7A 91.762 522 36 4 3032 3547 66858926 66859446 0.000000e+00 719.0
27 TraesCS1D01G427800 chr7A 93.455 275 13 2 2622 2892 66858644 66858917 3.590000e-108 403.0
28 TraesCS1D01G427800 chr7A 82.222 180 21 7 3552 3722 291829128 291829305 2.400000e-30 145.0
29 TraesCS1D01G427800 chr7A 85.455 110 14 2 3617 3725 188877555 188877663 6.780000e-21 113.0
30 TraesCS1D01G427800 chr7A 84.545 110 15 2 3617 3725 14741439 14741331 3.150000e-19 108.0
31 TraesCS1D01G427800 chr4B 81.245 1189 149 47 3338 4496 646245939 646244795 0.000000e+00 893.0
32 TraesCS1D01G427800 chr4B 76.905 420 44 32 1611 1985 646247930 646247519 1.090000e-43 189.0
33 TraesCS1D01G427800 chr4B 95.652 69 3 0 1423 1491 646248080 646248012 2.440000e-20 111.0
34 TraesCS1D01G427800 chr5B 93.005 386 26 1 4404 4789 488989556 488989940 5.600000e-156 562.0
35 TraesCS1D01G427800 chr5B 87.150 428 33 8 1770 2182 34033798 34034218 4.520000e-127 466.0
36 TraesCS1D01G427800 chr3B 90.160 437 34 5 1770 2203 761402455 761402025 2.010000e-155 560.0
37 TraesCS1D01G427800 chr3B 89.726 438 35 5 1770 2203 829441904 829442335 1.210000e-152 551.0
38 TraesCS1D01G427800 chr3B 88.889 450 28 8 1770 2203 729711595 729711152 1.220000e-147 534.0
39 TraesCS1D01G427800 chr3B 89.450 436 25 6 2125 2549 729711151 729710726 1.580000e-146 531.0
40 TraesCS1D01G427800 chr3B 88.532 436 29 5 2125 2549 773211359 773211784 7.400000e-140 508.0
41 TraesCS1D01G427800 chr5D 92.268 388 30 0 4402 4789 43333613 43334000 1.210000e-152 551.0
42 TraesCS1D01G427800 chr3D 91.260 389 26 7 4404 4788 133261014 133260630 2.640000e-144 523.0
43 TraesCS1D01G427800 chr6D 90.250 400 29 6 4398 4789 227525643 227526040 1.590000e-141 514.0
44 TraesCS1D01G427800 chr6D 88.354 395 33 10 4404 4787 424953692 424953300 5.840000e-126 462.0
45 TraesCS1D01G427800 chr6D 84.016 244 29 4 52 290 121159037 121159275 8.350000e-55 226.0
46 TraesCS1D01G427800 chr5A 85.637 369 43 10 4428 4787 432465475 432465108 6.050000e-101 379.0
47 TraesCS1D01G427800 chr5A 92.857 42 3 0 148 189 673694289 673694248 2.490000e-05 62.1
48 TraesCS1D01G427800 chr2D 89.937 159 14 2 3568 3725 596163892 596163735 3.910000e-48 204.0
49 TraesCS1D01G427800 chr2A 84.530 181 15 9 3552 3722 605060511 605060688 5.130000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G427800 chr1D 480340541 480348804 8263 False 15261.000000 15261 100.000000 1 8264 1 chr1D.!!$F1 8263
1 TraesCS1D01G427800 chr1A 576605987 576616335 10348 False 3118.500000 8482 90.654000 1 8264 4 chr1A.!!$F1 8263
2 TraesCS1D01G427800 chr1B 668647821 668655999 8178 False 1795.833333 5803 89.065500 1 8264 6 chr1B.!!$F1 8263
3 TraesCS1D01G427800 chr6B 151859438 151861901 2463 True 1019.000000 1903 91.710333 1000 3547 3 chr6B.!!$R1 2547
4 TraesCS1D01G427800 chr6B 553747670 553748416 746 False 487.500000 544 89.871000 1770 2549 2 chr6B.!!$F2 779
5 TraesCS1D01G427800 chr4A 503857814 503860278 2464 False 1014.666667 1901 91.460667 1000 3547 3 chr4A.!!$F1 2547
6 TraesCS1D01G427800 chr7B 599927029 599929495 2466 True 1002.333333 1892 91.103667 1000 3547 3 chr7B.!!$R1 2547
7 TraesCS1D01G427800 chr7A 66856977 66859446 2469 False 989.666667 1847 90.985667 1000 3547 3 chr7A.!!$F3 2547
8 TraesCS1D01G427800 chr4B 646244795 646248080 3285 True 397.666667 893 84.600667 1423 4496 3 chr4B.!!$R1 3073
9 TraesCS1D01G427800 chr3B 729710726 729711595 869 True 532.500000 534 89.169500 1770 2549 2 chr3B.!!$R2 779

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
854 2787 0.042131 AACTACCCTCCGATCCACCA 59.958 55.000 0.0 0.0 0.00 4.17 F
856 2789 0.397254 CTACCCTCCGATCCACCACT 60.397 60.000 0.0 0.0 0.00 4.00 F
1791 4057 0.319555 TCGACTTCCAGTTTCGCCTG 60.320 55.000 0.0 0.0 32.70 4.85 F
2087 4437 0.896923 GCCTGATGGTTTGCATTGGA 59.103 50.000 0.0 0.0 35.27 3.53 F
3713 6450 1.280982 CGACCGTCATCATCAAGGTG 58.719 55.000 0.0 0.0 35.00 4.00 F
4238 6980 0.403655 TGCTACAGTGGGAAATGGCA 59.596 50.000 0.0 0.0 0.00 4.92 F
6016 8766 4.418013 TGGTTGCACGAATAATTGACTG 57.582 40.909 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1740 3997 0.108186 GACGGGACACATCATCTGCA 60.108 55.000 0.00 0.00 0.00 4.41 R
2087 4437 0.187361 TTGGTACCCTGCAAAAGCCT 59.813 50.000 10.07 0.00 0.00 4.58 R
3398 6107 4.215399 GTGTTACTGCTTCATACCTGCAAA 59.785 41.667 0.00 0.00 36.22 3.68 R
3947 6684 5.178061 AGAAGACGCAACATTGATGATACA 58.822 37.500 0.00 0.00 0.00 2.29 R
5622 8371 0.959372 CTCCTTGAGGCTGCCAGTTG 60.959 60.000 22.65 8.05 34.44 3.16 R
6180 8964 0.535780 TCACAGGAAGCTGCCACTTG 60.536 55.000 15.05 5.05 0.00 3.16 R
7711 10565 0.035630 GCTTCAGACATCCTGGCACT 60.036 55.000 0.00 0.00 43.12 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.995258 CCCTTGCGTTTTCAAATGGATG 59.005 45.455 0.00 0.00 0.00 3.51
28 29 4.624882 TGCGTTTTCAAATGGATGCATAAC 59.375 37.500 0.00 0.00 0.00 1.89
103 105 2.231478 CTCCGAGTCTCTGCCAAGTTAA 59.769 50.000 0.00 0.00 0.00 2.01
119 125 5.513094 CCAAGTTAAATGTCTCTCCACCTCA 60.513 44.000 0.00 0.00 0.00 3.86
122 128 1.949799 AATGTCTCTCCACCTCAGCT 58.050 50.000 0.00 0.00 0.00 4.24
125 131 0.324275 GTCTCTCCACCTCAGCTCCT 60.324 60.000 0.00 0.00 0.00 3.69
132 138 1.107114 CACCTCAGCTCCTCGTACAT 58.893 55.000 0.00 0.00 0.00 2.29
135 141 0.743688 CTCAGCTCCTCGTACATGCT 59.256 55.000 0.00 0.00 0.00 3.79
145 151 3.935203 CCTCGTACATGCTTGTCAATCTT 59.065 43.478 8.74 0.00 37.28 2.40
264 270 1.450312 CGCCACTCCTCCAATCACC 60.450 63.158 0.00 0.00 0.00 4.02
266 272 1.450312 CCACTCCTCCAATCACCGC 60.450 63.158 0.00 0.00 0.00 5.68
361 367 6.157211 TCATCGAGTTTTTGGAGAGAAGTAC 58.843 40.000 0.00 0.00 0.00 2.73
371 377 0.461961 AGAGAAGTACTCCATGCGGC 59.538 55.000 0.00 0.00 45.96 6.53
404 411 2.857483 CCATGACCACCTGTAACAACA 58.143 47.619 0.00 0.00 0.00 3.33
406 413 3.440173 CCATGACCACCTGTAACAACATC 59.560 47.826 0.00 0.00 0.00 3.06
414 421 6.430000 ACCACCTGTAACAACATCTTTATGTC 59.570 38.462 0.00 0.00 45.79 3.06
415 422 6.128007 CCACCTGTAACAACATCTTTATGTCC 60.128 42.308 0.00 0.00 45.79 4.02
416 423 5.944007 ACCTGTAACAACATCTTTATGTCCC 59.056 40.000 0.00 0.00 45.79 4.46
456 463 6.775088 TGAATAGACAAAAGAACGCATGATC 58.225 36.000 0.00 0.00 0.00 2.92
481 488 6.490566 AAAAATGCAATGCCATCTTTTCTC 57.509 33.333 1.53 0.00 0.00 2.87
483 490 4.811969 ATGCAATGCCATCTTTTCTCAA 57.188 36.364 1.53 0.00 0.00 3.02
484 491 3.916761 TGCAATGCCATCTTTTCTCAAC 58.083 40.909 1.53 0.00 0.00 3.18
485 492 3.575256 TGCAATGCCATCTTTTCTCAACT 59.425 39.130 1.53 0.00 0.00 3.16
486 493 4.766373 TGCAATGCCATCTTTTCTCAACTA 59.234 37.500 1.53 0.00 0.00 2.24
526 538 4.279671 AGGATGCTCGTTTGTATAGAGGAG 59.720 45.833 0.00 0.00 35.89 3.69
537 549 7.042456 CGTTTGTATAGAGGAGACCAAATGATG 60.042 40.741 0.00 0.00 0.00 3.07
579 594 2.370849 AGTGGACGGAAATGGTTGTAGT 59.629 45.455 0.00 0.00 0.00 2.73
580 595 2.482721 GTGGACGGAAATGGTTGTAGTG 59.517 50.000 0.00 0.00 0.00 2.74
581 596 1.467342 GGACGGAAATGGTTGTAGTGC 59.533 52.381 0.00 0.00 0.00 4.40
698 713 8.993121 AGTACAAGAATCAATCACAACTGTAAG 58.007 33.333 0.00 0.00 42.29 2.34
763 2656 1.544246 GGCACGTAATTTGGCCTTTCT 59.456 47.619 3.32 0.00 43.09 2.52
807 2722 3.977244 GCACCCACGGCAACCTTG 61.977 66.667 0.00 0.00 0.00 3.61
817 2732 4.093952 CAACCTTGCCTCAGCGCG 62.094 66.667 0.00 0.00 44.31 6.86
835 2750 2.950673 GCACGTTGAAATGCCGGA 59.049 55.556 5.05 0.00 35.73 5.14
839 2754 1.801771 CACGTTGAAATGCCGGAACTA 59.198 47.619 5.05 0.00 0.00 2.24
851 2766 3.218974 GGAACTACCCTCCGATCCA 57.781 57.895 0.00 0.00 0.00 3.41
854 2787 0.042131 AACTACCCTCCGATCCACCA 59.958 55.000 0.00 0.00 0.00 4.17
856 2789 0.397254 CTACCCTCCGATCCACCACT 60.397 60.000 0.00 0.00 0.00 4.00
859 2792 0.397254 CCCTCCGATCCACCACTACT 60.397 60.000 0.00 0.00 0.00 2.57
876 2809 0.977395 ACTCTTTCTTCCCACCTCCG 59.023 55.000 0.00 0.00 0.00 4.63
918 2897 2.287251 CCAAAACCCCCACCCCAA 59.713 61.111 0.00 0.00 0.00 4.12
1074 3233 3.695825 GTCCCCTCCCCTCCCTCA 61.696 72.222 0.00 0.00 0.00 3.86
1135 3305 2.509336 CGCCGATTTCGCCTGTCT 60.509 61.111 0.00 0.00 38.18 3.41
1320 3510 2.358957 TCATCAAAATCTGGTGAGCCG 58.641 47.619 0.00 0.00 40.41 5.52
1323 3513 1.678970 AAAATCTGGTGAGCCGCCC 60.679 57.895 2.81 0.00 37.67 6.13
1324 3514 3.976701 AAATCTGGTGAGCCGCCCG 62.977 63.158 2.81 0.00 37.67 6.13
1340 3530 3.792736 CGCTTCCCCCGATCCCAA 61.793 66.667 0.00 0.00 0.00 4.12
1356 3546 1.089920 CCAACGATTTCCCTCTGCTG 58.910 55.000 0.00 0.00 0.00 4.41
1384 3574 4.065281 GTCCACCCCGTCCTCGTG 62.065 72.222 0.00 0.00 35.01 4.35
1408 3598 2.813179 CTAATCCGCGTGTGCTGCC 61.813 63.158 4.92 0.00 39.65 4.85
1510 3703 1.143620 CGTCCGGCCGGGTTATTTA 59.856 57.895 42.36 20.46 37.00 1.40
1535 3731 2.096013 CCTTCTTTTCTCGCCGGATTTC 59.904 50.000 5.05 0.00 0.00 2.17
1574 3770 0.730265 ATGTGACGCGTGTTTGTTGT 59.270 45.000 20.70 0.00 0.00 3.32
1674 3879 2.920524 TCTCTACGGTCAGTCCATCTC 58.079 52.381 0.00 0.00 35.57 2.75
1717 3955 7.448588 TTTTTGTTGTCGAAATGTTCAGATG 57.551 32.000 0.00 0.00 0.00 2.90
1740 3997 3.815401 CTCATCGTTTCCAACTGTTCCTT 59.185 43.478 0.00 0.00 0.00 3.36
1791 4057 0.319555 TCGACTTCCAGTTTCGCCTG 60.320 55.000 0.00 0.00 32.70 4.85
1818 4088 3.018856 TCTGCATCCTGCTTGGTAATTG 58.981 45.455 0.34 0.00 45.31 2.32
1837 4107 1.293963 GGGTGGTTCGGTTTACGCTC 61.294 60.000 0.00 0.00 43.86 5.03
1996 4312 1.086696 ATGTGCTTGCGTGGTGATAC 58.913 50.000 0.00 0.00 0.00 2.24
2045 4382 4.223923 TGGAATGGGTTTTCTTTGTGTGTT 59.776 37.500 0.00 0.00 0.00 3.32
2046 4383 5.182487 GGAATGGGTTTTCTTTGTGTGTTT 58.818 37.500 0.00 0.00 0.00 2.83
2047 4384 6.070767 TGGAATGGGTTTTCTTTGTGTGTTTA 60.071 34.615 0.00 0.00 0.00 2.01
2048 4385 6.478673 GGAATGGGTTTTCTTTGTGTGTTTAG 59.521 38.462 0.00 0.00 0.00 1.85
2049 4386 6.783708 ATGGGTTTTCTTTGTGTGTTTAGA 57.216 33.333 0.00 0.00 0.00 2.10
2087 4437 0.896923 GCCTGATGGTTTGCATTGGA 59.103 50.000 0.00 0.00 35.27 3.53
2505 5013 3.673323 GCTTGCTTGGTAACTATTGGTGC 60.673 47.826 0.00 0.00 37.61 5.01
3188 5803 3.135348 TGCTATGTTCAGAGGGGATCTTG 59.865 47.826 0.00 0.00 35.47 3.02
3208 5823 5.474532 TCTTGATCACCTTGGAAAACTGATG 59.525 40.000 0.00 0.00 0.00 3.07
3398 6107 8.131731 GTCACTTTTATCTGAAAGTTCTGCTTT 58.868 33.333 0.59 0.00 45.05 3.51
3515 6224 3.315191 CGGGGAATGGTAATCATTGTCAC 59.685 47.826 0.00 0.00 45.36 3.67
3713 6450 1.280982 CGACCGTCATCATCAAGGTG 58.719 55.000 0.00 0.00 35.00 4.00
3775 6512 9.209048 TCTTAAGGGCTACTGATTATTAACTCA 57.791 33.333 1.85 0.00 0.00 3.41
4232 6974 3.998913 TTGATGATGCTACAGTGGGAA 57.001 42.857 0.00 0.00 0.00 3.97
4233 6975 3.998913 TGATGATGCTACAGTGGGAAA 57.001 42.857 0.00 0.00 0.00 3.13
4234 6976 4.508551 TGATGATGCTACAGTGGGAAAT 57.491 40.909 0.00 0.00 0.00 2.17
4235 6977 4.201657 TGATGATGCTACAGTGGGAAATG 58.798 43.478 0.00 0.00 0.00 2.32
4236 6978 3.003394 TGATGCTACAGTGGGAAATGG 57.997 47.619 0.00 0.00 0.00 3.16
4237 6979 1.678101 GATGCTACAGTGGGAAATGGC 59.322 52.381 0.00 0.00 0.00 4.40
4238 6980 0.403655 TGCTACAGTGGGAAATGGCA 59.596 50.000 0.00 0.00 0.00 4.92
4393 7137 7.030165 TGTTTGAACGCATTGACTTTTTCTTA 58.970 30.769 0.00 0.00 0.00 2.10
5981 8731 8.540507 AAGGTGACTGTTGATACTGATAGTAT 57.459 34.615 1.34 1.34 41.63 2.12
6016 8766 4.418013 TGGTTGCACGAATAATTGACTG 57.582 40.909 0.00 0.00 0.00 3.51
6199 8983 0.535780 CAAGTGGCAGCTTCCTGTGA 60.536 55.000 3.45 0.00 41.26 3.58
6646 9464 4.357142 TCGTATGACGCTGGAGTTAAATC 58.643 43.478 0.00 0.00 42.21 2.17
6874 9692 9.956720 ATATAGTTGCTTTGCTGTTTATTGATC 57.043 29.630 0.00 0.00 0.00 2.92
6878 9696 7.658575 AGTTGCTTTGCTGTTTATTGATCATTT 59.341 29.630 0.00 0.00 0.00 2.32
6879 9697 7.354025 TGCTTTGCTGTTTATTGATCATTTG 57.646 32.000 0.00 0.00 0.00 2.32
6962 9780 4.018506 TCTTTCATTATGCTGGGTCTTGGA 60.019 41.667 0.00 0.00 0.00 3.53
6973 9791 4.718961 CTGGGTCTTGGATGGGTTATAAG 58.281 47.826 0.00 0.00 0.00 1.73
7021 9866 7.228507 TGCGGTGTTAAAAGCAGATCATATATT 59.771 33.333 0.00 0.00 34.39 1.28
7022 9867 8.076178 GCGGTGTTAAAAGCAGATCATATATTT 58.924 33.333 0.00 0.00 0.00 1.40
7100 9946 1.343789 GAAGGATAACCCCTAGGACGC 59.656 57.143 11.48 0.00 34.95 5.19
7145 9993 3.004629 TGTTTGGTCATGTCACTGAATGC 59.995 43.478 0.00 0.00 0.00 3.56
7151 9999 4.224433 GTCATGTCACTGAATGCAAACTG 58.776 43.478 0.00 0.00 0.00 3.16
7172 10020 5.473504 ACTGTTGCTTACTGAGGGTTTTATG 59.526 40.000 4.07 0.00 0.00 1.90
7173 10021 4.217550 TGTTGCTTACTGAGGGTTTTATGC 59.782 41.667 0.00 0.00 0.00 3.14
7174 10022 3.352648 TGCTTACTGAGGGTTTTATGCC 58.647 45.455 0.00 0.00 0.00 4.40
7245 10093 0.032117 ACGGACCCATCCTGATCTCA 60.032 55.000 0.00 0.00 43.73 3.27
7287 10135 9.929180 TGATCATCTCCCTATTAATCTTAAACG 57.071 33.333 0.00 0.00 0.00 3.60
7289 10137 7.159372 TCATCTCCCTATTAATCTTAAACGCC 58.841 38.462 0.00 0.00 0.00 5.68
7297 10145 2.019948 ATCTTAAACGCCCGGAAGAC 57.980 50.000 0.73 0.00 31.05 3.01
7299 10147 0.036671 CTTAAACGCCCGGAAGACCT 60.037 55.000 0.73 0.00 0.00 3.85
7361 10210 4.578928 GGTTTAAGTCTGCACAGGAAGAAA 59.421 41.667 0.00 0.00 27.67 2.52
7435 10286 2.228582 GTGATGGTGCTGTGTTATTGCA 59.771 45.455 0.00 0.00 0.00 4.08
7491 10342 5.847304 AGATATGCTACGCTGAAAGAATCA 58.153 37.500 0.00 0.00 34.07 2.57
7539 10392 8.700644 GGTTAGTTGCTTATACTATGTTCATCG 58.299 37.037 0.00 0.00 0.00 3.84
7565 10419 6.126739 GGGGGATATTTATGGTACCTGAGATC 60.127 46.154 14.36 8.17 0.00 2.75
7578 10432 3.196685 ACCTGAGATCTGCTGGTTAAGTC 59.803 47.826 0.00 0.00 34.41 3.01
7642 10496 1.841944 CGCAAATGATGATGCACGTTC 59.158 47.619 0.00 0.00 42.68 3.95
7643 10497 2.187707 GCAAATGATGATGCACGTTCC 58.812 47.619 0.00 0.00 42.12 3.62
7650 10504 4.344865 ATGCACGTTCCGCCCCTT 62.345 61.111 0.00 0.00 0.00 3.95
7670 10524 5.005094 CCTTTTTGCATCATTTGGTTGGAT 58.995 37.500 0.00 0.00 0.00 3.41
7684 10538 4.006989 TGGTTGGATTATGTTCTTGGACG 58.993 43.478 0.00 0.00 0.00 4.79
7698 10552 3.069586 TCTTGGACGAGTGATTCTTGTGT 59.930 43.478 0.00 0.00 40.56 3.72
7711 10565 7.552687 AGTGATTCTTGTGTGTTCTTGAACTAA 59.447 33.333 13.65 0.94 0.00 2.24
7717 10571 3.625764 GTGTGTTCTTGAACTAAGTGCCA 59.374 43.478 13.65 0.00 37.65 4.92
7740 10594 1.302366 TGTCTGAAGCTGCAAGTGTG 58.698 50.000 1.02 0.00 35.30 3.82
7759 10613 1.446099 CCATGCTTGCTGCTGCTTG 60.446 57.895 17.00 18.94 43.37 4.01
7775 10629 1.572085 CTTGAGTCTGGTTGCCTGCG 61.572 60.000 0.00 0.00 0.00 5.18
7854 10717 0.795698 TGTGATTGCGATGTTGGTCG 59.204 50.000 0.00 0.00 44.14 4.79
7942 10806 1.168407 TGCTTCAGTGTTCAGGCAGC 61.168 55.000 0.00 0.00 0.00 5.25
7987 10852 0.610687 ACCTTACCACAGAGCAGAGC 59.389 55.000 0.00 0.00 0.00 4.09
8005 10870 5.277876 GCAGAGCAGTTTTCATCATATCCTG 60.278 44.000 0.00 0.00 0.00 3.86
8029 10894 3.877508 AGGCTGAACTGTGTCAAGTTAAC 59.122 43.478 0.00 0.00 40.48 2.01
8068 10933 4.141981 GCATCAGAGAAGATCACTCCTTCA 60.142 45.833 13.71 0.63 41.73 3.02
8090 10955 0.810426 TGCAAGTTTACGGTGTCGCA 60.810 50.000 0.00 0.00 40.63 5.10
8091 10956 0.305313 GCAAGTTTACGGTGTCGCAA 59.695 50.000 0.00 0.00 40.63 4.85
8119 10984 1.875514 CTGGTGCGGACATGAATATGG 59.124 52.381 9.96 0.00 38.66 2.74
8126 10991 0.239347 GACATGAATATGGCAGCGGC 59.761 55.000 0.00 0.00 42.21 6.53
8127 10992 0.466007 ACATGAATATGGCAGCGGCA 60.466 50.000 11.88 9.25 43.71 5.69
8142 11007 1.452110 CGGCAGTGATGATTTGTCCA 58.548 50.000 0.00 0.00 0.00 4.02
8145 11010 1.133790 GCAGTGATGATTTGTCCAGCC 59.866 52.381 0.00 0.00 0.00 4.85
8233 11098 0.109319 GCACCCAAATTCGCGTTCAT 60.109 50.000 5.77 0.00 0.00 2.57
8244 11109 6.426980 AATTCGCGTTCATATGCATATCAT 57.573 33.333 16.46 0.00 35.99 2.45
8245 11110 4.845621 TCGCGTTCATATGCATATCATG 57.154 40.909 16.46 12.10 35.99 3.07
8251 11116 6.483687 CGTTCATATGCATATCATGTCATGG 58.516 40.000 16.46 2.69 36.63 3.66
8259 11124 5.599242 TGCATATCATGTCATGGAAATTGGT 59.401 36.000 12.90 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.864247 AGTTATGCATCCATTTGAAAACGC 59.136 37.500 0.19 0.00 32.85 4.84
8 9 6.650390 ACCAAGTTATGCATCCATTTGAAAAC 59.350 34.615 0.19 0.00 32.85 2.43
13 14 5.722263 TGAACCAAGTTATGCATCCATTTG 58.278 37.500 0.19 4.80 32.85 2.32
28 29 2.099098 GTGTTGGGTGACTTGAACCAAG 59.901 50.000 5.26 5.26 43.08 3.61
103 105 1.830477 GAGCTGAGGTGGAGAGACATT 59.170 52.381 0.00 0.00 0.00 2.71
119 125 0.898320 ACAAGCATGTACGAGGAGCT 59.102 50.000 0.00 0.00 38.24 4.09
122 128 3.195610 AGATTGACAAGCATGTACGAGGA 59.804 43.478 6.17 0.00 40.74 3.71
125 131 4.565022 TGAAGATTGACAAGCATGTACGA 58.435 39.130 6.17 0.00 40.74 3.43
132 138 7.994911 AGGATAACATATGAAGATTGACAAGCA 59.005 33.333 10.38 0.00 0.00 3.91
135 141 7.229306 GGCAGGATAACATATGAAGATTGACAA 59.771 37.037 10.38 0.00 0.00 3.18
145 151 3.327757 GGAGTGGGCAGGATAACATATGA 59.672 47.826 10.38 0.00 0.00 2.15
371 377 3.197790 CATGGCACGAGAAGGCGG 61.198 66.667 0.00 0.00 35.12 6.13
404 411 7.883311 CCTTATGAATAACGGGGACATAAAGAT 59.117 37.037 0.00 0.00 34.54 2.40
406 413 6.996282 ACCTTATGAATAACGGGGACATAAAG 59.004 38.462 0.00 0.00 34.54 1.85
414 421 7.172703 GTCTATTCAACCTTATGAATAACGGGG 59.827 40.741 10.06 1.06 46.28 5.73
415 422 7.713507 TGTCTATTCAACCTTATGAATAACGGG 59.286 37.037 10.06 1.34 46.28 5.28
416 423 8.657074 TGTCTATTCAACCTTATGAATAACGG 57.343 34.615 10.06 1.62 46.28 4.44
537 549 6.476706 CCACTTCATCAAAACTCTTCAAAACC 59.523 38.462 0.00 0.00 0.00 3.27
538 550 7.220875 GTCCACTTCATCAAAACTCTTCAAAAC 59.779 37.037 0.00 0.00 0.00 2.43
579 594 2.034879 GCTTGCACTAGCCTTCGCA 61.035 57.895 0.00 0.00 41.13 5.10
580 595 2.787915 GCTTGCACTAGCCTTCGC 59.212 61.111 0.00 0.00 41.13 4.70
581 596 2.456119 CCGCTTGCACTAGCCTTCG 61.456 63.158 4.82 0.00 41.13 3.79
603 618 2.352960 GCATGGTTCCTCTTTCGATGAC 59.647 50.000 0.00 0.00 0.00 3.06
673 688 8.774586 ACTTACAGTTGTGATTGATTCTTGTAC 58.225 33.333 0.00 0.00 0.00 2.90
674 689 8.902540 ACTTACAGTTGTGATTGATTCTTGTA 57.097 30.769 0.00 0.00 0.00 2.41
698 713 8.818141 TCCTCTGATACGATTGATTGATTTAC 57.182 34.615 0.00 0.00 0.00 2.01
700 715 7.730084 TCTCCTCTGATACGATTGATTGATTT 58.270 34.615 0.00 0.00 0.00 2.17
702 717 6.071447 CCTCTCCTCTGATACGATTGATTGAT 60.071 42.308 0.00 0.00 0.00 2.57
703 718 5.242615 CCTCTCCTCTGATACGATTGATTGA 59.757 44.000 0.00 0.00 0.00 2.57
704 719 5.468592 CCTCTCCTCTGATACGATTGATTG 58.531 45.833 0.00 0.00 0.00 2.67
705 720 4.021544 GCCTCTCCTCTGATACGATTGATT 60.022 45.833 0.00 0.00 0.00 2.57
706 721 3.509575 GCCTCTCCTCTGATACGATTGAT 59.490 47.826 0.00 0.00 0.00 2.57
707 722 2.887783 GCCTCTCCTCTGATACGATTGA 59.112 50.000 0.00 0.00 0.00 2.57
708 723 2.351253 CGCCTCTCCTCTGATACGATTG 60.351 54.545 0.00 0.00 0.00 2.67
709 724 1.883275 CGCCTCTCCTCTGATACGATT 59.117 52.381 0.00 0.00 0.00 3.34
741 2634 1.333177 AAGGCCAAATTACGTGCCAA 58.667 45.000 14.03 0.00 46.45 4.52
743 2636 1.544246 AGAAAGGCCAAATTACGTGCC 59.456 47.619 5.01 0.09 44.35 5.01
811 2726 3.593551 ATTTCAACGTGCCGCGCTG 62.594 57.895 5.56 0.00 46.11 5.18
812 2727 3.353836 ATTTCAACGTGCCGCGCT 61.354 55.556 5.56 0.00 46.11 5.92
813 2728 3.165318 CATTTCAACGTGCCGCGC 61.165 61.111 0.00 0.00 46.11 6.86
818 2733 1.001745 GTTCCGGCATTTCAACGTGC 61.002 55.000 0.00 0.00 40.55 5.34
819 2734 0.591170 AGTTCCGGCATTTCAACGTG 59.409 50.000 0.00 0.00 0.00 4.49
820 2735 1.802365 GTAGTTCCGGCATTTCAACGT 59.198 47.619 0.00 0.00 0.00 3.99
821 2736 1.129811 GGTAGTTCCGGCATTTCAACG 59.870 52.381 0.00 0.00 0.00 4.10
823 2738 1.353022 AGGGTAGTTCCGGCATTTCAA 59.647 47.619 0.00 0.00 37.00 2.69
834 2749 0.751452 GGTGGATCGGAGGGTAGTTC 59.249 60.000 0.00 0.00 0.00 3.01
835 2750 0.042131 TGGTGGATCGGAGGGTAGTT 59.958 55.000 0.00 0.00 0.00 2.24
839 2754 0.686769 GTAGTGGTGGATCGGAGGGT 60.687 60.000 0.00 0.00 0.00 4.34
846 2761 4.383226 GGGAAGAAAGAGTAGTGGTGGATC 60.383 50.000 0.00 0.00 0.00 3.36
847 2762 3.519913 GGGAAGAAAGAGTAGTGGTGGAT 59.480 47.826 0.00 0.00 0.00 3.41
848 2763 2.904434 GGGAAGAAAGAGTAGTGGTGGA 59.096 50.000 0.00 0.00 0.00 4.02
850 2765 3.557264 GGTGGGAAGAAAGAGTAGTGGTG 60.557 52.174 0.00 0.00 0.00 4.17
851 2766 2.638363 GGTGGGAAGAAAGAGTAGTGGT 59.362 50.000 0.00 0.00 0.00 4.16
854 2787 3.174779 GGAGGTGGGAAGAAAGAGTAGT 58.825 50.000 0.00 0.00 0.00 2.73
856 2789 2.176889 CGGAGGTGGGAAGAAAGAGTA 58.823 52.381 0.00 0.00 0.00 2.59
859 2792 1.125093 TGCGGAGGTGGGAAGAAAGA 61.125 55.000 0.00 0.00 0.00 2.52
888 2821 3.076217 TTTTGGGAGGGGTTGCGGT 62.076 57.895 0.00 0.00 0.00 5.68
934 2913 3.775654 GCACGGGAGAGGGGTGAG 61.776 72.222 0.00 0.00 33.58 3.51
935 2914 4.316823 AGCACGGGAGAGGGGTGA 62.317 66.667 0.00 0.00 33.58 4.02
936 2915 3.775654 GAGCACGGGAGAGGGGTG 61.776 72.222 0.00 0.00 34.85 4.61
1044 3191 0.398522 AGGGGACGCACCATATCTGA 60.399 55.000 0.98 0.00 41.20 3.27
1207 3380 1.527148 TCAGAGGAGATCGAGGCGG 60.527 63.158 0.00 0.00 0.00 6.13
1323 3513 3.792736 TTGGGATCGGGGGAAGCG 61.793 66.667 0.00 0.00 0.00 4.68
1324 3514 2.124278 GTTGGGATCGGGGGAAGC 60.124 66.667 0.00 0.00 0.00 3.86
1325 3515 1.696097 ATCGTTGGGATCGGGGGAAG 61.696 60.000 0.00 0.00 0.00 3.46
1326 3516 1.276140 AATCGTTGGGATCGGGGGAA 61.276 55.000 0.00 0.00 33.02 3.97
1327 3517 1.276140 AAATCGTTGGGATCGGGGGA 61.276 55.000 0.00 0.00 33.02 4.81
1328 3518 0.818040 GAAATCGTTGGGATCGGGGG 60.818 60.000 0.00 0.00 33.02 5.40
1329 3519 0.818040 GGAAATCGTTGGGATCGGGG 60.818 60.000 0.00 0.00 33.02 5.73
1339 3529 1.021390 CGCAGCAGAGGGAAATCGTT 61.021 55.000 0.00 0.00 0.00 3.85
1340 3530 1.448540 CGCAGCAGAGGGAAATCGT 60.449 57.895 0.00 0.00 0.00 3.73
1374 3564 0.099968 TTAGAATCGCACGAGGACGG 59.900 55.000 0.00 0.00 44.46 4.79
1375 3565 2.044860 GATTAGAATCGCACGAGGACG 58.955 52.381 0.00 0.00 45.75 4.79
1377 3567 1.001706 CGGATTAGAATCGCACGAGGA 60.002 52.381 0.00 0.00 36.27 3.71
1378 3568 1.409412 CGGATTAGAATCGCACGAGG 58.591 55.000 0.00 0.00 36.27 4.63
1379 3569 0.778815 GCGGATTAGAATCGCACGAG 59.221 55.000 0.00 0.00 36.27 4.18
1383 3573 0.179121 ACACGCGGATTAGAATCGCA 60.179 50.000 12.47 0.00 35.89 5.10
1384 3574 0.229753 CACACGCGGATTAGAATCGC 59.770 55.000 12.47 0.00 36.27 4.58
1408 3598 0.098905 GCTGCAGCATCAGACACATG 59.901 55.000 33.36 0.00 41.59 3.21
1510 3703 0.390472 CGGCGAGAAAAGAAGGAGCT 60.390 55.000 0.00 0.00 0.00 4.09
1535 3731 3.842869 CCCGAGGGAGAACAAGAAG 57.157 57.895 0.84 0.00 37.50 2.85
1609 3814 4.626081 ACCACGCCACCTGCTCAC 62.626 66.667 0.00 0.00 38.05 3.51
1740 3997 0.108186 GACGGGACACATCATCTGCA 60.108 55.000 0.00 0.00 0.00 4.41
1818 4088 1.293963 GAGCGTAAACCGAACCACCC 61.294 60.000 0.00 0.00 39.56 4.61
1837 4107 3.093278 GCGGAAGGAATCAGCACG 58.907 61.111 0.00 0.00 46.93 5.34
1996 4312 2.298158 AATGGACGCCGGCTCTACAG 62.298 60.000 26.68 10.34 0.00 2.74
2045 4382 4.877378 AACACCACACGGTCTAATCTAA 57.123 40.909 0.00 0.00 44.71 2.10
2046 4383 4.142315 GCTAACACCACACGGTCTAATCTA 60.142 45.833 0.00 0.00 44.71 1.98
2047 4384 3.368116 GCTAACACCACACGGTCTAATCT 60.368 47.826 0.00 0.00 44.71 2.40
2048 4385 2.928116 GCTAACACCACACGGTCTAATC 59.072 50.000 0.00 0.00 44.71 1.75
2049 4386 2.354403 GGCTAACACCACACGGTCTAAT 60.354 50.000 0.00 0.00 44.71 1.73
2087 4437 0.187361 TTGGTACCCTGCAAAAGCCT 59.813 50.000 10.07 0.00 0.00 4.58
2470 4978 0.319383 AGCAAGCTGACAGACTGACG 60.319 55.000 10.08 1.21 0.00 4.35
2505 5013 0.458543 AGTAGTCGGAATGCAGCACG 60.459 55.000 0.00 0.00 0.00 5.34
2994 5583 4.815846 CAGCCACCCCATTATTAAAATTGC 59.184 41.667 0.00 0.00 0.00 3.56
3188 5803 4.761739 TGTCATCAGTTTTCCAAGGTGATC 59.238 41.667 0.00 0.00 0.00 2.92
3208 5823 8.774890 ATCATGACAGAATGCTAAGATATGTC 57.225 34.615 0.00 0.00 42.53 3.06
3398 6107 4.215399 GTGTTACTGCTTCATACCTGCAAA 59.785 41.667 0.00 0.00 36.22 3.68
3515 6224 5.765182 AGTTTCAACTTCCAGAATACACAGG 59.235 40.000 0.00 0.00 35.21 4.00
3713 6450 5.631096 GCAATACCAAAGAGCAGAAAGAAAC 59.369 40.000 0.00 0.00 0.00 2.78
3775 6512 6.870965 GCTGAGATACGATCATAAAGAACCAT 59.129 38.462 0.00 0.00 0.00 3.55
3947 6684 5.178061 AGAAGACGCAACATTGATGATACA 58.822 37.500 0.00 0.00 0.00 2.29
4232 6974 5.120399 CAATGTGATAAGCCATTTGCCATT 58.880 37.500 0.00 0.00 42.71 3.16
4233 6975 4.162698 ACAATGTGATAAGCCATTTGCCAT 59.837 37.500 0.00 0.00 42.71 4.40
4234 6976 3.514706 ACAATGTGATAAGCCATTTGCCA 59.485 39.130 0.00 0.00 42.71 4.92
4235 6977 4.127566 ACAATGTGATAAGCCATTTGCC 57.872 40.909 0.00 0.00 42.71 4.52
4236 6978 7.593875 TTTTACAATGTGATAAGCCATTTGC 57.406 32.000 0.00 0.00 41.71 3.68
4238 6980 9.086336 CGAATTTTACAATGTGATAAGCCATTT 57.914 29.630 0.00 0.00 0.00 2.32
4350 7093 5.946972 TCAAACAAGTCTTGGTGGAAGTTTA 59.053 36.000 16.85 0.00 32.90 2.01
4393 7137 8.196378 AGTTGTACTATTCCAGAAGAAACTCT 57.804 34.615 0.00 0.00 38.21 3.24
4593 7337 7.707035 AGCTGCAATCAATACTACACTACTTAC 59.293 37.037 1.02 0.00 0.00 2.34
5614 8363 1.075374 AGGCTGCCAGTTGAACCAATA 59.925 47.619 22.65 0.00 0.00 1.90
5622 8371 0.959372 CTCCTTGAGGCTGCCAGTTG 60.959 60.000 22.65 8.05 34.44 3.16
5981 8731 4.320861 CGTGCAACCAATAAAGAACATGGA 60.321 41.667 0.00 0.00 36.75 3.41
5984 8734 5.446143 TTCGTGCAACCAATAAAGAACAT 57.554 34.783 0.00 0.00 0.00 2.71
5996 8746 4.158384 CACAGTCAATTATTCGTGCAACC 58.842 43.478 0.00 0.00 0.00 3.77
6058 8808 7.699878 AGGATAACCCAGTACAAAGAGAAAAT 58.300 34.615 0.00 0.00 37.41 1.82
6180 8964 0.535780 TCACAGGAAGCTGCCACTTG 60.536 55.000 15.05 5.05 0.00 3.16
6628 9446 3.627395 TGGATTTAACTCCAGCGTCAT 57.373 42.857 10.35 0.00 40.43 3.06
6646 9464 2.565841 GAGCTTTAGGTACCTGCATGG 58.434 52.381 25.33 10.63 42.93 3.66
6874 9692 9.520204 GTTATCTGTCCATGGAAATTACAAATG 57.480 33.333 18.20 0.00 0.00 2.32
6992 9837 2.316119 CTGCTTTTAACACCGCAGTC 57.684 50.000 0.00 0.00 43.53 3.51
7021 9866 4.264253 CCCAGTTCTCATGCTATGACAAA 58.736 43.478 0.00 0.00 35.06 2.83
7022 9867 3.370846 CCCCAGTTCTCATGCTATGACAA 60.371 47.826 0.00 0.00 35.06 3.18
7074 9919 2.889522 AGGGGTTATCCTTCTAGCCA 57.110 50.000 0.00 0.00 32.13 4.75
7076 9921 3.833650 GTCCTAGGGGTTATCCTTCTAGC 59.166 52.174 9.46 0.00 38.30 3.42
7082 9927 0.561680 AGCGTCCTAGGGGTTATCCT 59.438 55.000 9.46 0.00 40.79 3.24
7118 9966 3.023119 AGTGACATGACCAAACAAAGCA 58.977 40.909 0.00 0.00 0.00 3.91
7120 9968 4.898829 TCAGTGACATGACCAAACAAAG 57.101 40.909 0.00 0.00 0.00 2.77
7122 9970 4.499526 GCATTCAGTGACATGACCAAACAA 60.500 41.667 15.29 0.00 0.00 2.83
7145 9993 3.214328 ACCCTCAGTAAGCAACAGTTTG 58.786 45.455 0.00 0.00 35.62 2.93
7151 9999 4.380550 GGCATAAAACCCTCAGTAAGCAAC 60.381 45.833 0.00 0.00 0.00 4.17
7155 10003 3.374058 CACGGCATAAAACCCTCAGTAAG 59.626 47.826 0.00 0.00 0.00 2.34
7157 10005 2.937873 GCACGGCATAAAACCCTCAGTA 60.938 50.000 0.00 0.00 0.00 2.74
7172 10020 1.497722 GTTGCTAAGACTGCACGGC 59.502 57.895 0.00 0.00 40.40 5.68
7173 10021 1.781555 CGTTGCTAAGACTGCACGG 59.218 57.895 0.00 0.00 40.40 4.94
7174 10022 1.130613 GCGTTGCTAAGACTGCACG 59.869 57.895 0.00 0.00 40.40 5.34
7287 10135 4.475135 GCTCCAGGTCTTCCGGGC 62.475 72.222 0.00 0.00 46.38 6.13
7289 10137 2.685380 AGGCTCCAGGTCTTCCGG 60.685 66.667 0.00 0.00 39.05 5.14
7297 10145 0.747283 GATGTGCAAGAGGCTCCAGG 60.747 60.000 11.71 1.87 45.15 4.45
7299 10147 0.251354 GAGATGTGCAAGAGGCTCCA 59.749 55.000 11.71 1.44 45.15 3.86
7339 10188 5.751243 TTTCTTCCTGTGCAGACTTAAAC 57.249 39.130 0.02 0.00 0.00 2.01
7361 10210 7.439108 AGCAAATTACCTACTCCTACAAGAT 57.561 36.000 0.00 0.00 0.00 2.40
7389 10239 1.216064 TGCTTCCCACCAGCAGATAT 58.784 50.000 0.00 0.00 42.49 1.63
7411 10261 2.472695 TAACACAGCACCATCACTCC 57.527 50.000 0.00 0.00 0.00 3.85
7491 10342 2.147387 ACCGCCTGTCAACCCTCTT 61.147 57.895 0.00 0.00 0.00 2.85
7553 10407 1.490574 ACCAGCAGATCTCAGGTACC 58.509 55.000 2.73 2.73 0.00 3.34
7616 10470 3.499537 GTGCATCATCATTTGCGATAGGA 59.500 43.478 0.00 0.00 41.80 2.94
7642 10496 0.249955 AATGATGCAAAAAGGGGCGG 59.750 50.000 0.00 0.00 0.00 6.13
7643 10497 1.733360 CAAATGATGCAAAAAGGGGCG 59.267 47.619 0.00 0.00 0.00 6.13
7650 10504 7.166851 ACATAATCCAACCAAATGATGCAAAA 58.833 30.769 0.00 0.00 0.00 2.44
7670 10524 6.037786 AGAATCACTCGTCCAAGAACATAA 57.962 37.500 0.00 0.00 0.00 1.90
7684 10538 5.991328 TCAAGAACACACAAGAATCACTC 57.009 39.130 0.00 0.00 0.00 3.51
7698 10552 3.135712 TCCTGGCACTTAGTTCAAGAACA 59.864 43.478 14.69 0.00 43.47 3.18
7711 10565 0.035630 GCTTCAGACATCCTGGCACT 60.036 55.000 0.00 0.00 43.12 4.40
7717 10571 1.350351 ACTTGCAGCTTCAGACATCCT 59.650 47.619 0.00 0.00 0.00 3.24
7759 10613 2.029844 GTCGCAGGCAACCAGACTC 61.030 63.158 0.00 0.00 27.44 3.36
7854 10717 1.769733 ACACATGCATTGCAACGAAC 58.230 45.000 16.46 0.00 43.62 3.95
7891 10754 4.898861 TGTTTTTAGGAGCAAACAAGGGAT 59.101 37.500 0.00 0.00 39.40 3.85
7919 10782 0.595095 CCTGAACACTGAAGCAAGCC 59.405 55.000 0.00 0.00 0.00 4.35
7965 10829 3.851098 CTCTGCTCTGTGGTAAGGTAAC 58.149 50.000 0.00 0.00 0.00 2.50
7987 10852 5.826737 AGCCTTCAGGATATGATGAAAACTG 59.173 40.000 0.00 0.00 37.89 3.16
8005 10870 2.565841 ACTTGACACAGTTCAGCCTTC 58.434 47.619 0.00 0.00 0.00 3.46
8068 10933 2.603652 GCGACACCGTAAACTTGCATTT 60.604 45.455 0.00 0.00 38.24 2.32
8090 10955 2.270205 CCGCACCAGAGCCATCTT 59.730 61.111 0.00 0.00 31.64 2.40
8091 10956 2.685017 TCCGCACCAGAGCCATCT 60.685 61.111 0.00 0.00 35.63 2.90
8099 10964 1.875514 CCATATTCATGTCCGCACCAG 59.124 52.381 0.00 0.00 0.00 4.00
8119 10984 0.524816 CAAATCATCACTGCCGCTGC 60.525 55.000 0.00 0.00 38.26 5.25
8126 10991 2.439409 TGGCTGGACAAATCATCACTG 58.561 47.619 0.00 0.00 0.00 3.66
8127 10992 2.885135 TGGCTGGACAAATCATCACT 57.115 45.000 0.00 0.00 0.00 3.41
8145 11010 3.207669 GGATCAGGCAGGCGCTTG 61.208 66.667 16.21 16.21 46.18 4.01
8233 11098 7.452189 ACCAATTTCCATGACATGATATGCATA 59.548 33.333 17.24 9.27 34.82 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.