Multiple sequence alignment - TraesCS1D01G427600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G427600 chr1D 100.000 1578 0 0 1 1578 479931274 479929697 0.000000e+00 2915.0
1 TraesCS1D01G427600 chr1D 100.000 412 0 0 1826 2237 479929449 479929038 0.000000e+00 761.0
2 TraesCS1D01G427600 chr1D 96.591 264 9 0 1280 1543 480100707 480100444 2.640000e-119 438.0
3 TraesCS1D01G427600 chr1D 95.785 261 11 0 1280 1540 478749185 478749445 2.660000e-114 422.0
4 TraesCS1D01G427600 chr1D 95.785 261 11 0 1280 1540 478753285 478753545 2.660000e-114 422.0
5 TraesCS1D01G427600 chr1D 95.367 259 12 0 1280 1538 478745146 478745404 1.600000e-111 412.0
6 TraesCS1D01G427600 chr1D 94.981 259 13 0 1280 1538 480152951 480152693 7.440000e-110 407.0
7 TraesCS1D01G427600 chr1D 94.208 259 15 0 1280 1538 478728676 478728934 1.610000e-106 396.0
8 TraesCS1D01G427600 chr1D 93.264 193 11 1 1356 1548 479957157 479956967 1.310000e-72 283.0
9 TraesCS1D01G427600 chr5D 81.274 1538 260 16 5 1526 340185051 340183526 0.000000e+00 1219.0
10 TraesCS1D01G427600 chr2D 79.728 1544 278 18 1 1526 245556454 245557980 0.000000e+00 1085.0
11 TraesCS1D01G427600 chr2D 100.000 29 0 0 2149 2177 635309344 635309372 1.000000e-03 54.7
12 TraesCS1D01G427600 chr6B 79.429 1400 265 14 2 1386 225581442 225580051 0.000000e+00 968.0
13 TraesCS1D01G427600 chr7A 76.995 1391 291 20 1 1371 81226236 81224855 0.000000e+00 769.0
14 TraesCS1D01G427600 chr3A 75.162 1393 324 17 11 1386 58042095 58040708 8.710000e-179 636.0
15 TraesCS1D01G427600 chr5B 75.125 1399 320 22 8 1386 467999644 468001034 4.050000e-177 630.0
16 TraesCS1D01G427600 chr1A 93.525 417 21 3 1826 2237 576531560 576531975 1.140000e-172 616.0
17 TraesCS1D01G427600 chr4B 74.249 1398 316 37 6 1375 55980402 55981783 4.200000e-152 547.0
18 TraesCS1D01G427600 chr1B 90.847 295 21 2 1826 2116 668145076 668144784 7.490000e-105 390.0
19 TraesCS1D01G427600 chr1B 95.833 96 4 0 1449 1544 668188431 668188336 2.970000e-34 156.0
20 TraesCS1D01G427600 chr1B 84.286 140 14 4 2103 2237 668144687 668144551 1.800000e-26 130.0
21 TraesCS1D01G427600 chr2A 84.036 332 48 3 1826 2153 698277763 698277433 4.640000e-82 315.0
22 TraesCS1D01G427600 chr4D 82.022 89 13 2 1878 1963 506129787 506129699 3.080000e-09 73.1
23 TraesCS1D01G427600 chr2B 100.000 29 0 0 2149 2177 779639174 779639202 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G427600 chr1D 479929038 479931274 2236 True 1838.000000 2915 100.000000 1 2237 2 chr1D.!!$R4 2236
1 TraesCS1D01G427600 chr1D 478745146 478753545 8399 False 418.666667 422 95.645667 1280 1540 3 chr1D.!!$F2 260
2 TraesCS1D01G427600 chr5D 340183526 340185051 1525 True 1219.000000 1219 81.274000 5 1526 1 chr5D.!!$R1 1521
3 TraesCS1D01G427600 chr2D 245556454 245557980 1526 False 1085.000000 1085 79.728000 1 1526 1 chr2D.!!$F1 1525
4 TraesCS1D01G427600 chr6B 225580051 225581442 1391 True 968.000000 968 79.429000 2 1386 1 chr6B.!!$R1 1384
5 TraesCS1D01G427600 chr7A 81224855 81226236 1381 True 769.000000 769 76.995000 1 1371 1 chr7A.!!$R1 1370
6 TraesCS1D01G427600 chr3A 58040708 58042095 1387 True 636.000000 636 75.162000 11 1386 1 chr3A.!!$R1 1375
7 TraesCS1D01G427600 chr5B 467999644 468001034 1390 False 630.000000 630 75.125000 8 1386 1 chr5B.!!$F1 1378
8 TraesCS1D01G427600 chr4B 55980402 55981783 1381 False 547.000000 547 74.249000 6 1375 1 chr4B.!!$F1 1369
9 TraesCS1D01G427600 chr1B 668144551 668145076 525 True 260.000000 390 87.566500 1826 2237 2 chr1B.!!$R2 411

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 365 0.179 GATGGTAGTGGACAGGCTGG 59.821 60.0 20.34 0.58 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2212 9193 0.889186 TTTTTCGGGAGGTGCTCTGC 60.889 55.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
185 186 7.148967 GCCAAACGTGAAGAAAGATATTGAAAC 60.149 37.037 0.00 0.00 0.00 2.78
233 235 6.256757 GTCAGCTCAACAAGGTAGAACATATC 59.743 42.308 0.00 0.00 33.36 1.63
363 365 0.179000 GATGGTAGTGGACAGGCTGG 59.821 60.000 20.34 0.58 0.00 4.85
405 407 2.290260 CCACTGGCTCATCCTTACACAA 60.290 50.000 0.00 0.00 35.26 3.33
434 436 8.327429 CAAACAGTGTTTGAAACATTAATGGAC 58.673 33.333 35.12 10.30 44.35 4.02
455 457 6.071447 TGGACAATGTGATTAAACTTCATGGG 60.071 38.462 0.00 0.00 0.00 4.00
464 466 7.068716 GTGATTAAACTTCATGGGCCTCTTATT 59.931 37.037 4.53 0.00 0.00 1.40
467 469 4.322057 ACTTCATGGGCCTCTTATTTGT 57.678 40.909 4.53 0.00 0.00 2.83
469 471 5.826643 ACTTCATGGGCCTCTTATTTGTAA 58.173 37.500 4.53 0.00 0.00 2.41
497 499 5.461526 TCTGACAGAGACACAATCTTTACG 58.538 41.667 0.00 0.00 38.00 3.18
524 526 7.156876 TGCTTTATACCAGGAATTGTTCAAG 57.843 36.000 0.00 0.00 0.00 3.02
526 528 6.377146 GCTTTATACCAGGAATTGTTCAAGGA 59.623 38.462 0.00 0.00 0.00 3.36
559 561 4.558226 AGATCAGGTTCAACACTGCATA 57.442 40.909 0.00 0.00 34.76 3.14
580 582 1.044790 CATCCCCAAACAGATGGCCC 61.045 60.000 0.00 0.00 39.26 5.80
589 591 1.296392 CAGATGGCCCGACAGAACA 59.704 57.895 0.00 0.00 0.00 3.18
597 599 1.948104 CCCGACAGAACAAGTGAACA 58.052 50.000 0.00 0.00 0.00 3.18
631 633 2.142356 TATTTGAGGGGCATGGTGTG 57.858 50.000 0.00 0.00 0.00 3.82
681 683 0.253044 TCCACTGGCAGAGTTATGGC 59.747 55.000 23.66 0.00 45.50 4.40
704 706 2.016905 ACACCAGCTACCACTCTTCT 57.983 50.000 0.00 0.00 0.00 2.85
780 782 4.280929 GGGAATTTGCTGTAGAACAACCTT 59.719 41.667 0.00 0.00 0.00 3.50
787 789 5.168569 TGCTGTAGAACAACCTTTATCTCG 58.831 41.667 0.00 0.00 0.00 4.04
867 869 1.963338 GAGCACGCTCAAAGCAGGT 60.963 57.895 14.10 0.00 42.58 4.00
890 892 8.203485 AGGTTCAAACATTTTGCTGATAGAAAA 58.797 29.630 0.00 0.00 0.00 2.29
950 952 1.396996 CTGAAAATTCAGCCGTACGGG 59.603 52.381 33.98 19.41 46.97 5.28
1026 1039 3.681313 GCCTGGAGAAGATTGGAGAAGTC 60.681 52.174 0.00 0.00 0.00 3.01
1128 1141 3.146066 TCAAGCTGTTCCATTACCACAC 58.854 45.455 0.00 0.00 0.00 3.82
1131 1144 1.463444 GCTGTTCCATTACCACACGTC 59.537 52.381 0.00 0.00 0.00 4.34
1179 1192 0.773644 AGACCATTCCAGTGGCAGTT 59.226 50.000 3.51 0.00 43.27 3.16
1182 1195 3.153919 GACCATTCCAGTGGCAGTTTTA 58.846 45.455 3.51 0.00 43.27 1.52
1202 1215 7.384387 AGTTTTAGACCGAAGAGTCATACAAAC 59.616 37.037 0.00 0.00 39.34 2.93
1254 1267 2.203625 TGGGAAAGCTTGGCACCC 60.204 61.111 18.38 18.38 38.42 4.61
1301 8162 4.043435 AGCCTTCCTAAACAAGACATTCCT 59.957 41.667 0.00 0.00 0.00 3.36
1440 8304 4.853924 ACGGTGCAAATGAGAAGAAAAT 57.146 36.364 0.00 0.00 0.00 1.82
1529 8393 8.091954 GTTACTGTTTTGTAACCGTTAAACAC 57.908 34.615 6.70 2.90 43.66 3.32
1530 8394 6.499234 ACTGTTTTGTAACCGTTAAACACT 57.501 33.333 6.70 0.00 36.05 3.55
1531 8395 6.316319 ACTGTTTTGTAACCGTTAAACACTG 58.684 36.000 6.70 7.02 36.05 3.66
1532 8396 6.072563 ACTGTTTTGTAACCGTTAAACACTGT 60.073 34.615 6.70 7.44 36.05 3.55
1533 8397 6.675987 TGTTTTGTAACCGTTAAACACTGTT 58.324 32.000 6.70 0.00 36.05 3.16
1534 8398 7.144000 TGTTTTGTAACCGTTAAACACTGTTT 58.856 30.769 11.82 11.82 36.05 2.83
1535 8399 8.292448 TGTTTTGTAACCGTTAAACACTGTTTA 58.708 29.630 9.86 9.86 36.05 2.01
1536 8400 9.288124 GTTTTGTAACCGTTAAACACTGTTTAT 57.712 29.630 13.88 3.33 34.83 1.40
1537 8401 9.500864 TTTTGTAACCGTTAAACACTGTTTATC 57.499 29.630 13.88 12.17 34.83 1.75
1538 8402 6.875753 TGTAACCGTTAAACACTGTTTATCG 58.124 36.000 25.22 25.22 34.83 2.92
1539 8403 5.989551 AACCGTTAAACACTGTTTATCGT 57.010 34.783 27.52 19.12 28.98 3.73
1554 8418 7.850492 ACTGTTTATCGTTTTGTAACCGTTAAC 59.150 33.333 0.00 0.00 0.00 2.01
1556 8420 4.747540 ATCGTTTTGTAACCGTTAACCC 57.252 40.909 0.00 0.00 0.00 4.11
1558 8422 2.615912 CGTTTTGTAACCGTTAACCCCA 59.384 45.455 0.00 0.00 0.00 4.96
1562 8426 4.696479 TTGTAACCGTTAACCCCAGTTA 57.304 40.909 0.00 1.19 37.42 2.24
1563 8427 4.906747 TGTAACCGTTAACCCCAGTTAT 57.093 40.909 0.00 0.00 38.26 1.89
1564 8428 4.831107 TGTAACCGTTAACCCCAGTTATC 58.169 43.478 0.00 1.05 38.26 1.75
1565 8429 2.678471 ACCGTTAACCCCAGTTATCG 57.322 50.000 0.00 8.67 45.13 2.92
1566 8430 1.901833 ACCGTTAACCCCAGTTATCGT 59.098 47.619 12.68 2.68 44.53 3.73
1568 8432 3.244526 ACCGTTAACCCCAGTTATCGTTT 60.245 43.478 12.68 1.23 44.53 3.60
1569 8433 4.020662 ACCGTTAACCCCAGTTATCGTTTA 60.021 41.667 12.68 0.00 44.53 2.01
1570 8434 5.118286 CCGTTAACCCCAGTTATCGTTTAT 58.882 41.667 12.68 0.00 44.53 1.40
1571 8435 5.006941 CCGTTAACCCCAGTTATCGTTTATG 59.993 44.000 12.68 0.00 44.53 1.90
1572 8436 5.006941 CGTTAACCCCAGTTATCGTTTATGG 59.993 44.000 0.00 0.00 42.59 2.74
1573 8437 4.579647 AACCCCAGTTATCGTTTATGGT 57.420 40.909 0.00 0.00 33.27 3.55
1574 8438 5.697082 AACCCCAGTTATCGTTTATGGTA 57.303 39.130 0.00 0.00 33.27 3.25
1575 8439 5.697082 ACCCCAGTTATCGTTTATGGTAA 57.303 39.130 0.00 0.00 0.00 2.85
1576 8440 6.064735 ACCCCAGTTATCGTTTATGGTAAA 57.935 37.500 0.00 0.00 0.00 2.01
1577 8441 6.483405 ACCCCAGTTATCGTTTATGGTAAAA 58.517 36.000 0.00 0.00 0.00 1.52
1863 8727 4.023450 TCACAGAGTAGTACAACACTTCCG 60.023 45.833 2.52 0.00 38.80 4.30
1871 8735 4.761975 AGTACAACACTTCCGACTTTTCA 58.238 39.130 0.00 0.00 31.59 2.69
1893 8757 4.649674 CAGCCCCTATTGTACTCACTAGAA 59.350 45.833 0.00 0.00 31.28 2.10
1898 8762 7.524038 GCCCCTATTGTACTCACTAGAATACAG 60.524 44.444 0.00 0.00 31.28 2.74
1899 8763 7.371936 CCCTATTGTACTCACTAGAATACAGC 58.628 42.308 0.00 0.00 31.28 4.40
1917 8781 3.809832 ACAGCACAGTGTAAACTGATGTC 59.190 43.478 20.22 9.85 39.99 3.06
1929 8793 4.696479 AACTGATGTCCTCTCAAAGTGT 57.304 40.909 0.00 0.00 0.00 3.55
1937 8801 7.604164 TGATGTCCTCTCAAAGTGTAATTTCTC 59.396 37.037 0.00 0.00 0.00 2.87
1954 8818 9.413048 GTAATTTCTCGCAAGCTATATCTTACT 57.587 33.333 0.00 0.00 37.18 2.24
2033 8897 4.462508 TGTGGCAAAGAAATGACAACAA 57.537 36.364 0.00 0.00 40.79 2.83
2038 8902 4.875536 GGCAAAGAAATGACAACAAAGGTT 59.124 37.500 0.00 0.00 37.87 3.50
2083 8951 3.382083 TCAGCCACTACCACTATCTCA 57.618 47.619 0.00 0.00 0.00 3.27
2109 8977 7.558604 ACAACAAAAGGATTCAATCATATGGG 58.441 34.615 2.13 0.00 0.00 4.00
2122 9099 7.632861 TCAATCATATGGGATACATGGTAAGG 58.367 38.462 2.13 0.00 40.82 2.69
2131 9108 5.247564 GGGATACATGGTAAGGTATACTGCA 59.752 44.000 2.25 0.00 34.81 4.41
2132 9109 6.239772 GGGATACATGGTAAGGTATACTGCAA 60.240 42.308 2.25 0.00 34.81 4.08
2133 9110 7.221450 GGATACATGGTAAGGTATACTGCAAA 58.779 38.462 2.25 0.00 33.55 3.68
2181 9158 5.854010 ATGATTTGAAGATTGCTCTGCAT 57.146 34.783 0.00 0.00 36.90 3.96
2184 9161 4.970662 TTTGAAGATTGCTCTGCATACC 57.029 40.909 0.00 0.00 36.90 2.73
2212 9193 7.973944 GCCATACAAATAACTAAGAAAAGGGTG 59.026 37.037 0.00 0.00 0.00 4.61
2215 9196 6.981722 ACAAATAACTAAGAAAAGGGTGCAG 58.018 36.000 0.00 0.00 0.00 4.41
2216 9197 6.775629 ACAAATAACTAAGAAAAGGGTGCAGA 59.224 34.615 0.00 0.00 0.00 4.26
2232 9213 1.826385 CAGAGCACCTCCCGAAAAAT 58.174 50.000 0.00 0.00 0.00 1.82
2233 9214 2.939640 GCAGAGCACCTCCCGAAAAATA 60.940 50.000 0.00 0.00 0.00 1.40
2234 9215 2.678336 CAGAGCACCTCCCGAAAAATAC 59.322 50.000 0.00 0.00 0.00 1.89
2236 9217 1.353022 AGCACCTCCCGAAAAATACCA 59.647 47.619 0.00 0.00 0.00 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 8.201464 CCCACTTAAATCCTGTTTTTGTACTTT 58.799 33.333 0.00 0.00 0.00 2.66
42 43 0.252012 AGTCAGTGCTAGCTCCCACT 60.252 55.000 17.23 13.41 42.67 4.00
108 109 4.773323 AGTTGCTTTAATTCCAGAGTGC 57.227 40.909 0.00 0.00 0.00 4.40
166 167 9.897744 TGACAATGTTTCAATATCTTTCTTCAC 57.102 29.630 0.00 0.00 0.00 3.18
185 186 2.427232 CAGGGCACTGTTTGACAATG 57.573 50.000 8.15 0.00 39.92 2.82
206 208 4.202357 TGTTCTACCTTGTTGAGCTGACAT 60.202 41.667 0.00 0.00 0.00 3.06
233 235 2.759355 TGTAGTAACCCAGGAGGATGG 58.241 52.381 0.00 0.00 39.89 3.51
326 328 3.633986 CCATCAAGATTACCTCTTTGCCC 59.366 47.826 0.00 0.00 41.60 5.36
363 365 5.116528 GTGGTAAAAAGTGAGCGTATTTTGC 59.883 40.000 0.00 0.00 0.00 3.68
405 407 9.044150 CATTAATGTTTCAAACACTGTTTGGAT 57.956 29.630 26.99 15.00 45.50 3.41
434 436 5.105228 AGGCCCATGAAGTTTAATCACATTG 60.105 40.000 0.00 0.00 0.00 2.82
455 457 6.371548 TGTCAGACACATTACAAATAAGAGGC 59.628 38.462 0.00 0.00 0.00 4.70
491 493 7.548196 TTCCTGGTATAAAGCATTCGTAAAG 57.452 36.000 0.00 0.00 31.47 1.85
497 499 7.771183 TGAACAATTCCTGGTATAAAGCATTC 58.229 34.615 0.00 0.00 31.47 2.67
524 526 4.593956 ACCTGATCTTGACTCCAAATTCC 58.406 43.478 0.00 0.00 0.00 3.01
526 528 5.634118 TGAACCTGATCTTGACTCCAAATT 58.366 37.500 0.00 0.00 0.00 1.82
559 561 1.412074 GGCCATCTGTTTGGGGATGAT 60.412 52.381 0.00 0.00 41.05 2.45
580 582 3.370978 ACACTTGTTCACTTGTTCTGTCG 59.629 43.478 0.00 0.00 0.00 4.35
589 591 5.283457 AGCTTCTAGACACTTGTTCACTT 57.717 39.130 0.00 0.00 0.00 3.16
597 599 6.410540 CCCTCAAATAAGCTTCTAGACACTT 58.589 40.000 0.00 10.46 0.00 3.16
657 659 2.435586 CTCTGCCAGTGGAAGCCG 60.436 66.667 15.20 2.32 0.00 5.52
681 683 1.070758 AGAGTGGTAGCTGGTGTTGTG 59.929 52.381 0.00 0.00 0.00 3.33
704 706 3.507162 TGAAAGGGAGTGCATTTCAGA 57.493 42.857 18.73 0.00 37.86 3.27
780 782 4.464951 TGTTAGGGTTGCTTCTCGAGATAA 59.535 41.667 17.44 9.39 0.00 1.75
787 789 5.473504 TCAGAAATTGTTAGGGTTGCTTCTC 59.526 40.000 0.00 0.00 0.00 2.87
867 869 9.044150 CCTTTTTCTATCAGCAAAATGTTTGAA 57.956 29.630 4.93 0.00 0.00 2.69
890 892 4.982241 TTCCAATTGTCTCTCTGTCCTT 57.018 40.909 4.43 0.00 0.00 3.36
1026 1039 7.497249 CCCTCTGGAAGATGTAATTTGTAAGAG 59.503 40.741 0.00 0.00 45.62 2.85
1128 1141 1.254026 TTGGAGTCACTAGTGGGACG 58.746 55.000 22.48 0.00 39.01 4.79
1131 1144 2.637872 TCCTTTTGGAGTCACTAGTGGG 59.362 50.000 22.48 12.12 45.19 4.61
1179 1192 5.860182 CGTTTGTATGACTCTTCGGTCTAAA 59.140 40.000 0.00 0.00 37.16 1.85
1182 1195 3.504906 TCGTTTGTATGACTCTTCGGTCT 59.495 43.478 0.00 0.00 37.16 3.85
1202 1215 1.268539 GCCTCACTGGTGTTTTGTTCG 60.269 52.381 0.53 0.00 38.35 3.95
1254 1267 2.358957 TCTTCCCAAGTTGCATCATCG 58.641 47.619 0.00 0.00 0.00 3.84
1301 8162 4.319911 CGAGGCGAAAAAGTTTATGACCAA 60.320 41.667 0.00 0.00 0.00 3.67
1440 8304 0.950836 CGTTGAACATGTCTTGGGCA 59.049 50.000 0.00 0.00 0.00 5.36
1526 8390 5.294060 ACGGTTACAAAACGATAAACAGTGT 59.706 36.000 3.81 0.00 36.39 3.55
1527 8391 5.740406 ACGGTTACAAAACGATAAACAGTG 58.260 37.500 3.81 0.00 36.39 3.66
1528 8392 5.989551 ACGGTTACAAAACGATAAACAGT 57.010 34.783 3.81 0.00 36.39 3.55
1529 8393 7.321034 GGTTAACGGTTACAAAACGATAAACAG 59.679 37.037 9.41 0.00 36.39 3.16
1530 8394 7.128976 GGTTAACGGTTACAAAACGATAAACA 58.871 34.615 9.41 0.00 36.39 2.83
1531 8395 6.577055 GGGTTAACGGTTACAAAACGATAAAC 59.423 38.462 3.81 5.45 36.39 2.01
1532 8396 6.293680 GGGGTTAACGGTTACAAAACGATAAA 60.294 38.462 3.81 0.00 36.39 1.40
1533 8397 5.180304 GGGGTTAACGGTTACAAAACGATAA 59.820 40.000 3.81 0.00 36.39 1.75
1534 8398 4.693095 GGGGTTAACGGTTACAAAACGATA 59.307 41.667 3.81 0.00 36.39 2.92
1535 8399 3.501828 GGGGTTAACGGTTACAAAACGAT 59.498 43.478 3.81 0.00 36.39 3.73
1536 8400 2.875317 GGGGTTAACGGTTACAAAACGA 59.125 45.455 3.81 0.00 36.39 3.85
1537 8401 2.615912 TGGGGTTAACGGTTACAAAACG 59.384 45.455 0.00 0.00 36.39 3.60
1538 8402 3.631686 ACTGGGGTTAACGGTTACAAAAC 59.368 43.478 0.00 0.00 34.66 2.43
1539 8403 3.895998 ACTGGGGTTAACGGTTACAAAA 58.104 40.909 0.00 0.00 0.00 2.44
1833 8697 7.013942 AGTGTTGTACTACTCTGTGATGTACAA 59.986 37.037 10.53 18.22 45.66 2.41
1841 8705 4.023450 TCGGAAGTGTTGTACTACTCTGTG 60.023 45.833 11.77 6.30 39.18 3.66
1842 8706 4.023365 GTCGGAAGTGTTGTACTACTCTGT 60.023 45.833 11.77 4.17 39.18 3.41
1843 8707 4.215827 AGTCGGAAGTGTTGTACTACTCTG 59.784 45.833 11.77 5.51 39.18 3.35
1844 8708 4.396522 AGTCGGAAGTGTTGTACTACTCT 58.603 43.478 8.88 7.51 39.18 3.24
1848 8712 5.904941 TGAAAAGTCGGAAGTGTTGTACTA 58.095 37.500 0.00 0.00 39.18 1.82
1851 8715 3.558418 GCTGAAAAGTCGGAAGTGTTGTA 59.442 43.478 0.00 0.00 30.94 2.41
1863 8727 4.844884 AGTACAATAGGGGCTGAAAAGTC 58.155 43.478 0.00 0.00 0.00 3.01
1871 8735 4.537945 TCTAGTGAGTACAATAGGGGCT 57.462 45.455 0.00 0.00 42.57 5.19
1917 8781 4.690748 TGCGAGAAATTACACTTTGAGAGG 59.309 41.667 0.00 0.00 0.00 3.69
1929 8793 9.411801 CAGTAAGATATAGCTTGCGAGAAATTA 57.588 33.333 13.46 0.00 35.91 1.40
1937 8801 7.910304 AGAAAAACAGTAAGATATAGCTTGCG 58.090 34.615 13.46 10.40 35.91 4.85
2038 8902 7.384439 TGTGTTCAGTGTTCTATGACAAAAA 57.616 32.000 0.00 0.00 0.00 1.94
2072 8940 5.690865 TCCTTTTGTTGTTGAGATAGTGGT 58.309 37.500 0.00 0.00 0.00 4.16
2083 8951 8.042515 CCCATATGATTGAATCCTTTTGTTGTT 58.957 33.333 3.65 0.00 0.00 2.83
2109 8977 8.671384 TTTTGCAGTATACCTTACCATGTATC 57.329 34.615 0.00 0.00 0.00 2.24
2181 9158 9.742144 TTTTCTTAGTTATTTGTATGGCAGGTA 57.258 29.630 0.00 0.00 0.00 3.08
2184 9161 8.190784 CCCTTTTCTTAGTTATTTGTATGGCAG 58.809 37.037 0.00 0.00 0.00 4.85
2189 9166 8.644374 TGCACCCTTTTCTTAGTTATTTGTAT 57.356 30.769 0.00 0.00 0.00 2.29
2199 9176 2.783135 TGCTCTGCACCCTTTTCTTAG 58.217 47.619 0.00 0.00 31.71 2.18
2212 9193 0.889186 TTTTTCGGGAGGTGCTCTGC 60.889 55.000 0.00 0.00 0.00 4.26
2215 9196 2.014857 GGTATTTTTCGGGAGGTGCTC 58.985 52.381 0.00 0.00 0.00 4.26
2216 9197 1.353022 TGGTATTTTTCGGGAGGTGCT 59.647 47.619 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.