AutoCloner

Multiple sequence alignment - TraesCS1D01G426800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G426800	chr1D	100.000	2412	0	0	1	2412	479738881	479736470	0.000000e+00	4455.0
1	TraesCS1D01G426800	chr1D	87.739	261	29	1	1030	1287	479759374	479759114	3.900000e-78	302.0
2	TraesCS1D01G426800	chr1D	80.296	203	37	3	595	796	479751225	479751025	1.490000e-32	150.0
3	TraesCS1D01G426800	chr1D	79.661	236	16	12	1528	1736	479758861	479758631	8.990000e-30	141.0
4	TraesCS1D01G426800	chr1D	83.740	123	16	3	1528	1649	479750289	479750170	1.960000e-21	113.0
5	TraesCS1D01G426800	chr1D	84.158	101	5	5	1389	1480	479750483	479750385	1.190000e-13	87.9
6	TraesCS1D01G426800	chr1B	88.254	1924	114	49	1	1889	667964715	667966561	0.000000e+00	2198.0
7	TraesCS1D01G426800	chr1B	89.655	261	24	1	1030	1287	667930949	667931209	1.790000e-86	329.0
8	TraesCS1D01G426800	chr1B	86.667	285	32	2	999	1280	667918613	667918332	6.480000e-81	311.0
9	TraesCS1D01G426800	chr1B	87.739	261	29	1	1030	1287	667975740	667975480	3.900000e-78	302.0
10	TraesCS1D01G426800	chr1B	79.592	245	17	14	1528	1745	667975213	667974975	6.950000e-31	145.0
11	TraesCS1D01G426800	chr1B	77.731	238	19	13	1528	1736	667996694	667996462	5.450000e-22	115.0
12	TraesCS1D01G426800	chr1B	75.833	240	31	15	1528	1745	668030529	668030295	1.970000e-16	97.1
13	TraesCS1D01G426800	chr1B	81.197	117	17	5	1528	1643	667931476	667931588	3.300000e-14	89.8
14	TraesCS1D01G426800	chr1A	90.758	1082	32	28	820	1889	576078447	576077422	0.000000e+00	1382.0
15	TraesCS1D01G426800	chr1A	92.357	314	14	6	457	767	576078754	576078448	2.850000e-119	438.0
16	TraesCS1D01G426800	chr1A	86.563	387	39	8	1	383	576079127	576078750	4.800000e-112	414.0
17	TraesCS1D01G426800	chr1A	87.413	286	33	1	995	1280	576065909	576065627	2.310000e-85	326.0
18	TraesCS1D01G426800	chr1A	87.324	284	28	4	1039	1319	576203517	576203239	3.870000e-83	318.0
19	TraesCS1D01G426800	chr1A	88.800	250	25	1	1040	1286	576139134	576138885	1.080000e-78	303.0
20	TraesCS1D01G426800	chr1A	74.901	761	108	47	199	939	576204325	576203628	1.100000e-68	270.0
21	TraesCS1D01G426800	chr1A	85.124	121	9	7	1528	1643	576138613	576138497	5.450000e-22	115.0
22	TraesCS1D01G426800	chr6D	92.000	525	39	3	1890	2412	192100195	192100718	0.000000e+00	734.0
23	TraesCS1D01G426800	chr5A	91.985	524	32	6	1890	2406	315276476	315276996	0.000000e+00	726.0
24	TraesCS1D01G426800	chr5A	90.440	523	43	5	1890	2412	454198166	454198681	0.000000e+00	682.0
25	TraesCS1D01G426800	chr2D	91.699	518	29	4	1890	2406	214052650	214053154	0.000000e+00	706.0
26	TraesCS1D01G426800	chr2D	89.272	522	54	2	1892	2412	181585036	181584516	0.000000e+00	652.0
27	TraesCS1D01G426800	chr5D	90.133	527	46	4	1890	2412	293095179	293094655	0.000000e+00	680.0
28	TraesCS1D01G426800	chr2A	90.249	523	41	7	1890	2412	235311814	235312326	0.000000e+00	675.0
29	TraesCS1D01G426800	chr4D	88.931	524	56	2	1890	2412	177115904	177115382	0.000000e+00	645.0
30	TraesCS1D01G426800	chr4A	89.143	525	43	10	1890	2412	30813210	30813722	2.020000e-180	641.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G426800	chr1D	479736470	479738881	2411	True	4455.000000	4455	100.000000	1	2412	1	chr1D.!!$R1	2411
1	TraesCS1D01G426800	chr1D	479758631	479759374	743	True	221.500000	302	83.700000	1030	1736	2	chr1D.!!$R3	706
2	TraesCS1D01G426800	chr1B	667964715	667966561	1846	False	2198.000000	2198	88.254000	1	1889	1	chr1B.!!$F1	1888
3	TraesCS1D01G426800	chr1B	667974975	667975740	765	True	223.500000	302	83.665500	1030	1745	2	chr1B.!!$R4	715
4	TraesCS1D01G426800	chr1B	667930949	667931588	639	False	209.400000	329	85.426000	1030	1643	2	chr1B.!!$F2	613
5	TraesCS1D01G426800	chr1A	576077422	576079127	1705	True	744.666667	1382	89.892667	1	1889	3	chr1A.!!$R2	1888
6	TraesCS1D01G426800	chr1A	576203239	576204325	1086	True	294.000000	318	81.112500	199	1319	2	chr1A.!!$R4	1120
7	TraesCS1D01G426800	chr1A	576138497	576139134	637	True	209.000000	303	86.962000	1040	1643	2	chr1A.!!$R3	603
8	TraesCS1D01G426800	chr6D	192100195	192100718	523	False	734.000000	734	92.000000	1890	2412	1	chr6D.!!$F1	522
9	TraesCS1D01G426800	chr5A	315276476	315276996	520	False	726.000000	726	91.985000	1890	2406	1	chr5A.!!$F1	516
10	TraesCS1D01G426800	chr5A	454198166	454198681	515	False	682.000000	682	90.440000	1890	2412	1	chr5A.!!$F2	522
11	TraesCS1D01G426800	chr2D	214052650	214053154	504	False	706.000000	706	91.699000	1890	2406	1	chr2D.!!$F1	516
12	TraesCS1D01G426800	chr2D	181584516	181585036	520	True	652.000000	652	89.272000	1892	2412	1	chr2D.!!$R1	520
13	TraesCS1D01G426800	chr5D	293094655	293095179	524	True	680.000000	680	90.133000	1890	2412	1	chr5D.!!$R1	522
14	TraesCS1D01G426800	chr2A	235311814	235312326	512	False	675.000000	675	90.249000	1890	2412	1	chr2A.!!$F1	522
15	TraesCS1D01G426800	chr4D	177115382	177115904	522	True	645.000000	645	88.931000	1890	2412	1	chr4D.!!$R1	522
16	TraesCS1D01G426800	chr4A	30813210	30813722	512	False	641.000000	641	89.143000	1890	2412	1	chr4A.!!$F1	522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
294	296	0.309922	CCAAGATCATCATGCACGGC	59.69	55.0	0.0	0.0	0.0	5.68	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2046	2294	1.532794	CTATCCGGCTCAGGCTCCT	60.533	63.158	0.0	0.0	38.73	3.69	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	1.024271	CCTGGTTCATATGGCCAACG	58.976	55.000	10.96	0.21	0.00	4.10
34	35	2.327568	CCAACGCGCATCTGAATTTTT	58.672	42.857	5.73	0.00	0.00	1.94
97	98	6.007936	AGCGACTAGATGCTCTTAACTATG	57.992	41.667	7.51	0.00	36.53	2.23
113	114	5.782893	AACTATGTAGCTAGCTCCTTGAG	57.217	43.478	23.26	15.18	0.00	3.02
118	119	3.449018	TGTAGCTAGCTCCTTGAGAAAGG	59.551	47.826	23.26	0.00	41.35	3.11
230	232	8.974060	TGAAACTTTTAAGGTACACTCAAGAT	57.026	30.769	0.00	0.00	0.00	2.40
293	295	1.671979	ACCAAGATCATCATGCACGG	58.328	50.000	0.00	0.00	0.00	4.94
294	296	0.309922	CCAAGATCATCATGCACGGC	59.690	55.000	0.00	0.00	0.00	5.68
432	456	9.574516	AGGTTGTATCTTCTTTTAGAACAATGT	57.425	29.630	0.00	0.00	32.82	2.71
433	457	9.827411	GGTTGTATCTTCTTTTAGAACAATGTC	57.173	33.333	0.00	0.00	32.82	3.06
434	458	9.827411	GTTGTATCTTCTTTTAGAACAATGTCC	57.173	33.333	0.00	0.00	32.82	4.02
435	459	9.567776	TTGTATCTTCTTTTAGAACAATGTCCA	57.432	29.630	0.00	0.00	29.89	4.02
436	460	9.739276	TGTATCTTCTTTTAGAACAATGTCCAT	57.261	29.630	0.00	0.00	29.89	3.41
439	463	8.792830	TCTTCTTTTAGAACAATGTCCATAGG	57.207	34.615	0.00	0.00	29.89	2.57
440	464	7.336931	TCTTCTTTTAGAACAATGTCCATAGGC	59.663	37.037	0.00	0.00	29.89	3.93
441	465	6.480763	TCTTTTAGAACAATGTCCATAGGCA	58.519	36.000	0.00	0.00	0.00	4.75
442	466	7.118723	TCTTTTAGAACAATGTCCATAGGCAT	58.881	34.615	0.00	0.00	0.00	4.40
443	467	8.271458	TCTTTTAGAACAATGTCCATAGGCATA	58.729	33.333	0.00	0.00	0.00	3.14
444	468	8.450578	TTTTAGAACAATGTCCATAGGCATAG	57.549	34.615	0.00	0.00	0.00	2.23
445	469	4.392940	AGAACAATGTCCATAGGCATAGC	58.607	43.478	0.00	0.00	0.00	2.97
446	470	4.103785	AGAACAATGTCCATAGGCATAGCT	59.896	41.667	0.00	0.00	0.00	3.32
447	471	4.443978	ACAATGTCCATAGGCATAGCTT	57.556	40.909	0.00	0.00	0.00	3.74
459	483	8.579006	CCATAGGCATAGCTTTGATTCATTAAA	58.421	33.333	8.49	0.00	0.00	1.52
779	839	2.633509	GGTGGCTGGCTGCTTCAAG	61.634	63.158	16.14	0.00	42.39	3.02
786	846	2.943199	GCTGGCTGCTTCAAGTATTCCT	60.943	50.000	9.31	0.00	38.95	3.36
787	847	2.941720	CTGGCTGCTTCAAGTATTCCTC	59.058	50.000	0.00	0.00	0.00	3.71
788	848	2.573462	TGGCTGCTTCAAGTATTCCTCT	59.427	45.455	0.00	0.00	0.00	3.69
789	849	3.202097	GGCTGCTTCAAGTATTCCTCTC	58.798	50.000	0.00	0.00	0.00	3.20
790	850	3.118445	GGCTGCTTCAAGTATTCCTCTCT	60.118	47.826	0.00	0.00	0.00	3.10
791	851	4.512484	GCTGCTTCAAGTATTCCTCTCTT	58.488	43.478	0.00	0.00	0.00	2.85
792	852	4.940654	GCTGCTTCAAGTATTCCTCTCTTT	59.059	41.667	0.00	0.00	0.00	2.52
793	853	5.414144	GCTGCTTCAAGTATTCCTCTCTTTT	59.586	40.000	0.00	0.00	0.00	2.27
883	997	3.443037	CTCTCAATTGTCTAGTCTGGCG	58.557	50.000	5.13	0.00	0.00	5.69
961	1078	1.938861	CAACCAACGAGTTCACGGG	59.061	57.895	0.00	0.00	37.61	5.28
962	1079	1.227734	AACCAACGAGTTCACGGGG	60.228	57.895	0.00	0.00	37.66	5.73
963	1080	2.358247	CCAACGAGTTCACGGGGG	60.358	66.667	0.00	0.00	37.61	5.40
1288	1430	4.487412	CCGACAGGTACGACCGGC	62.487	72.222	0.00	0.00	44.90	6.13
1289	1431	4.487412	CGACAGGTACGACCGGCC	62.487	72.222	0.00	0.00	44.90	6.13
1290	1432	4.487412	GACAGGTACGACCGGCCG	62.487	72.222	21.04	21.04	44.90	6.13
1312	1454	5.616488	GGCTTTACCGTGTTTCTTATCAA	57.384	39.130	0.00	0.00	0.00	2.57
1313	1455	6.004408	GGCTTTACCGTGTTTCTTATCAAA	57.996	37.500	0.00	0.00	0.00	2.69
1314	1456	6.617879	GGCTTTACCGTGTTTCTTATCAAAT	58.382	36.000	0.00	0.00	0.00	2.32
1315	1457	7.088272	GGCTTTACCGTGTTTCTTATCAAATT	58.912	34.615	0.00	0.00	0.00	1.82
1316	1458	8.238631	GGCTTTACCGTGTTTCTTATCAAATTA	58.761	33.333	0.00	0.00	0.00	1.40
1317	1459	9.783256	GCTTTACCGTGTTTCTTATCAAATTAT	57.217	29.630	0.00	0.00	0.00	1.28
1321	1463	8.106247	ACCGTGTTTCTTATCAAATTATGTGT	57.894	30.769	0.00	0.00	0.00	3.72
1322	1464	8.020819	ACCGTGTTTCTTATCAAATTATGTGTG	58.979	33.333	0.00	0.00	0.00	3.82
1323	1465	7.008266	CCGTGTTTCTTATCAAATTATGTGTGC	59.992	37.037	0.00	0.00	0.00	4.57
1324	1466	7.750458	CGTGTTTCTTATCAAATTATGTGTGCT	59.250	33.333	0.00	0.00	0.00	4.40
1325	1467	9.410556	GTGTTTCTTATCAAATTATGTGTGCTT	57.589	29.630	0.00	0.00	0.00	3.91
1326	1468	9.979578	TGTTTCTTATCAAATTATGTGTGCTTT	57.020	25.926	0.00	0.00	0.00	3.51
1328	1470	9.979578	TTTCTTATCAAATTATGTGTGCTTTGT	57.020	25.926	0.00	0.00	31.98	2.83
1334	1476	9.979578	ATCAAATTATGTGTGCTTTGTAGAAAA	57.020	25.926	0.00	0.00	31.98	2.29
1362	1506	1.826385	ATGTGTGGACTTAAGCTGGC	58.174	50.000	1.29	0.00	0.00	4.85
1364	1508	1.671054	TGTGGACTTAAGCTGGCGC	60.671	57.895	0.00	0.00	0.00	6.53
1379	1523	4.035675	AGCTGGCGCTAATCTTGTAATTTC	59.964	41.667	7.64	0.00	46.79	2.17
1383	1527	5.064707	TGGCGCTAATCTTGTAATTTCTGTC	59.935	40.000	7.64	0.00	0.00	3.51
1384	1528	5.191059	GCGCTAATCTTGTAATTTCTGTCG	58.809	41.667	0.00	0.00	0.00	4.35
1385	1529	5.728255	CGCTAATCTTGTAATTTCTGTCGG	58.272	41.667	0.00	0.00	0.00	4.79
1771	2011	7.493320	TCTGAACAAATACAGTACGTTTCAAGT	59.507	33.333	0.00	0.00	35.84	3.16
1806	2046	6.537301	TCCTTTTGTTATATCATCGTGGTGAC	59.463	38.462	0.00	0.00	0.00	3.67
1839	2079	2.135139	GCGGAGATCACGAATATGCAA	58.865	47.619	13.12	0.00	0.00	4.08
1993	2233	3.208747	ACAACAGGAGGTACAAAGGTG	57.791	47.619	0.00	0.00	0.00	4.00
2062	2310	3.160047	CAGGAGCCTGAGCCGGAT	61.160	66.667	5.05	0.00	46.30	4.18
2229	2477	7.125792	AGTAACCAGAAAGTTTGAAGAGAGA	57.874	36.000	0.00	0.00	0.00	3.10
2231	2479	4.967036	ACCAGAAAGTTTGAAGAGAGAGG	58.033	43.478	0.00	0.00	0.00	3.69
2406	2656	0.178964	CACCAACCACCTCCCACAAT	60.179	55.000	0.00	0.00	0.00	2.71

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	3.305094	CCATCACAAAAATTCAGATGCGC	59.695	43.478	0.00	0.00	35.84	6.09
34	35	4.087907	TGCAAAGATTGGATTCCATCACA	58.912	39.130	6.15	0.00	31.53	3.58
230	232	2.220313	GGTTGCGTTGGGTTGTAACTA	58.780	47.619	0.00	0.00	32.26	2.24
234	236	1.528776	GGGGTTGCGTTGGGTTGTA	60.529	57.895	0.00	0.00	0.00	2.41
293	295	4.911514	TTTTGGTTCAACTAACTCCTGC	57.088	40.909	0.00	0.00	38.23	4.85
294	296	9.449719	ACTATATTTTGGTTCAACTAACTCCTG	57.550	33.333	0.00	0.00	38.23	3.86
356	364	3.937814	ACAGCGTGGATGTCTTGAATTA	58.062	40.909	0.00	0.00	0.00	1.40
369	384	1.442769	ATGCAAGTTCTACAGCGTGG	58.557	50.000	0.00	0.00	0.00	4.94
408	432	9.827411	GGACATTGTTCTAAAAGAAGATACAAC	57.173	33.333	0.00	0.00	34.42	3.32
413	437	9.401058	CCTATGGACATTGTTCTAAAAGAAGAT	57.599	33.333	0.00	0.00	34.42	2.40
414	438	7.336931	GCCTATGGACATTGTTCTAAAAGAAGA	59.663	37.037	0.00	0.00	34.42	2.87
415	439	7.121168	TGCCTATGGACATTGTTCTAAAAGAAG	59.879	37.037	0.00	0.00	34.42	2.85
416	440	6.945435	TGCCTATGGACATTGTTCTAAAAGAA	59.055	34.615	0.00	0.00	0.00	2.52
417	441	6.480763	TGCCTATGGACATTGTTCTAAAAGA	58.519	36.000	0.00	0.00	0.00	2.52
418	442	6.757897	TGCCTATGGACATTGTTCTAAAAG	57.242	37.500	0.00	0.00	0.00	2.27
419	443	7.013274	GCTATGCCTATGGACATTGTTCTAAAA	59.987	37.037	0.00	0.00	0.00	1.52
420	444	6.486657	GCTATGCCTATGGACATTGTTCTAAA	59.513	38.462	0.00	0.00	0.00	1.85
421	445	5.997746	GCTATGCCTATGGACATTGTTCTAA	59.002	40.000	0.00	0.00	0.00	2.10
422	446	5.307976	AGCTATGCCTATGGACATTGTTCTA	59.692	40.000	0.00	0.00	0.00	2.10
423	447	4.103785	AGCTATGCCTATGGACATTGTTCT	59.896	41.667	0.00	0.00	0.00	3.01
424	448	4.392940	AGCTATGCCTATGGACATTGTTC	58.607	43.478	0.00	0.00	0.00	3.18
425	449	4.443978	AGCTATGCCTATGGACATTGTT	57.556	40.909	0.00	0.00	0.00	2.83
426	450	4.443978	AAGCTATGCCTATGGACATTGT	57.556	40.909	0.00	0.00	0.00	2.71
427	451	4.823442	TCAAAGCTATGCCTATGGACATTG	59.177	41.667	0.00	0.00	0.00	2.82
428	452	5.052693	TCAAAGCTATGCCTATGGACATT	57.947	39.130	0.00	0.00	0.00	2.71
429	453	4.712051	TCAAAGCTATGCCTATGGACAT	57.288	40.909	0.00	0.00	0.00	3.06
430	454	4.712051	ATCAAAGCTATGCCTATGGACA	57.288	40.909	0.00	0.00	0.00	4.02
431	455	5.065914	TGAATCAAAGCTATGCCTATGGAC	58.934	41.667	0.00	0.00	0.00	4.02
432	456	5.308976	TGAATCAAAGCTATGCCTATGGA	57.691	39.130	0.00	0.00	0.00	3.41
433	457	6.585695	AATGAATCAAAGCTATGCCTATGG	57.414	37.500	0.00	0.00	0.00	2.74
434	458	9.403110	GTTTAATGAATCAAAGCTATGCCTATG	57.597	33.333	0.00	0.00	0.00	2.23
435	459	9.135189	TGTTTAATGAATCAAAGCTATGCCTAT	57.865	29.630	0.00	0.00	0.00	2.57
436	460	8.518430	TGTTTAATGAATCAAAGCTATGCCTA	57.482	30.769	0.00	0.00	0.00	3.93
437	461	7.408756	TGTTTAATGAATCAAAGCTATGCCT	57.591	32.000	0.00	0.00	0.00	4.75
438	462	7.170320	CCATGTTTAATGAATCAAAGCTATGCC	59.830	37.037	0.00	0.00	0.00	4.40
439	463	7.922278	TCCATGTTTAATGAATCAAAGCTATGC	59.078	33.333	0.00	0.00	0.00	3.14
440	464	9.976511	ATCCATGTTTAATGAATCAAAGCTATG	57.023	29.630	0.00	0.00	0.00	2.23
442	466	9.806203	CAATCCATGTTTAATGAATCAAAGCTA	57.194	29.630	0.00	0.00	0.00	3.32
443	467	7.279313	GCAATCCATGTTTAATGAATCAAAGCT	59.721	33.333	0.00	0.00	0.00	3.74
444	468	7.064847	TGCAATCCATGTTTAATGAATCAAAGC	59.935	33.333	0.00	0.00	0.00	3.51
445	469	8.481974	TGCAATCCATGTTTAATGAATCAAAG	57.518	30.769	0.00	0.00	0.00	2.77
446	470	9.451002	AATGCAATCCATGTTTAATGAATCAAA	57.549	25.926	0.00	0.00	33.49	2.69
447	471	9.451002	AAATGCAATCCATGTTTAATGAATCAA	57.549	25.926	0.00	0.00	33.49	2.57
962	1079	1.136891	GTTGGGCTTATGATGTTGGCC	59.863	52.381	0.00	0.00	44.16	5.36
963	1080	1.136891	GGTTGGGCTTATGATGTTGGC	59.863	52.381	0.00	0.00	0.00	4.52
991	1112	1.949133	GCGACGCCATTGCTCGATA	60.949	57.895	9.14	0.00	39.13	2.92
1290	1432	5.616488	TTGATAAGAAACACGGTAAAGCC	57.384	39.130	0.00	0.00	0.00	4.35
1291	1433	9.783256	ATAATTTGATAAGAAACACGGTAAAGC	57.217	29.630	0.00	0.00	0.00	3.51
1309	1451	9.809096	TTTTTCTACAAAGCACACATAATTTGA	57.191	25.926	3.73	0.00	36.41	2.69
1312	1454	9.979578	TGATTTTTCTACAAAGCACACATAATT	57.020	25.926	0.00	0.00	27.15	1.40
1313	1455	9.979578	TTGATTTTTCTACAAAGCACACATAAT	57.020	25.926	0.00	0.00	31.90	1.28
1314	1456	9.809096	TTTGATTTTTCTACAAAGCACACATAA	57.191	25.926	0.00	0.00	31.90	1.90
1315	1457	9.979578	ATTTGATTTTTCTACAAAGCACACATA	57.020	25.926	0.00	0.00	37.04	2.29
1316	1458	8.891671	ATTTGATTTTTCTACAAAGCACACAT	57.108	26.923	0.00	0.00	37.04	3.21
1317	1459	8.715191	AATTTGATTTTTCTACAAAGCACACA	57.285	26.923	0.00	0.00	37.04	3.72
1326	1468	9.906660	GTCCACACATAATTTGATTTTTCTACA	57.093	29.630	0.00	0.00	0.00	2.74
1332	1474	9.423061	GCTTAAGTCCACACATAATTTGATTTT	57.577	29.630	4.02	0.00	0.00	1.82
1333	1475	8.806146	AGCTTAAGTCCACACATAATTTGATTT	58.194	29.630	4.02	0.00	0.00	2.17
1334	1476	8.246180	CAGCTTAAGTCCACACATAATTTGATT	58.754	33.333	4.02	0.00	0.00	2.57
1362	1506	5.291128	ACCGACAGAAATTACAAGATTAGCG	59.709	40.000	0.00	0.00	0.00	4.26
1364	1508	8.818057	CCTAACCGACAGAAATTACAAGATTAG	58.182	37.037	0.00	0.00	0.00	1.73
1379	1523	1.798813	GTGCTTCAACCTAACCGACAG	59.201	52.381	0.00	0.00	0.00	3.51
1383	1527	2.489971	TCAAGTGCTTCAACCTAACCG	58.510	47.619	0.00	0.00	0.00	4.44
1384	1528	4.134563	TCTTCAAGTGCTTCAACCTAACC	58.865	43.478	0.00	0.00	0.00	2.85
1385	1529	5.703130	AGATCTTCAAGTGCTTCAACCTAAC	59.297	40.000	0.00	0.00	0.00	2.34
1643	1866	6.101650	TGGTTACATGTGCAGAGGATATAG	57.898	41.667	9.11	0.00	0.00	1.31
1650	1887	4.512944	GGACATATGGTTACATGTGCAGAG	59.487	45.833	9.11	0.00	46.50	3.35
1761	2001	4.827284	AGGAATCCATGAAACTTGAAACGT	59.173	37.500	0.61	0.00	0.00	3.99
2027	2267	5.185056	GCTCCTGCCTTTCCTTTTTATGTTA	59.815	40.000	0.00	0.00	0.00	2.41
2046	2294	1.532794	CTATCCGGCTCAGGCTCCT	60.533	63.158	0.00	0.00	38.73	3.69
2053	2301	2.505982	GGCTTGCTATCCGGCTCA	59.494	61.111	0.00	0.00	0.00	4.26
2062	2310	1.682451	ATTAGTCGCCCGGCTTGCTA	61.682	55.000	8.05	4.27	0.00	3.49
2231	2479	1.805945	CACTTCGACGGGCTACTGC	60.806	63.158	0.00	0.00	38.76	4.40
2345	2595	2.029828	TCTTCGCTGAACTCCAGACTTC	60.030	50.000	0.00	0.00	45.78	3.01

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.