Multiple sequence alignment - TraesCS1D01G425900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G425900 chr1D 100.000 3089 0 0 1 3089 479357770 479360858 0.000000e+00 5705.0
1 TraesCS1D01G425900 chr1D 88.608 79 9 0 2210 2288 468101568 468101646 2.540000e-16 97.1
2 TraesCS1D01G425900 chr1D 87.500 80 9 1 2209 2288 323672090 323672168 1.180000e-14 91.6
3 TraesCS1D01G425900 chr1D 88.312 77 7 2 2211 2285 396890656 396890732 1.180000e-14 91.6
4 TraesCS1D01G425900 chr1B 87.916 2251 92 84 1 2210 667619009 667621120 0.000000e+00 2484.0
5 TraesCS1D01G425900 chr1B 87.164 483 14 18 445 927 657403687 657403253 3.550000e-139 505.0
6 TraesCS1D01G425900 chr1B 83.568 426 56 9 2294 2712 667621130 667621548 1.340000e-103 387.0
7 TraesCS1D01G425900 chr1A 89.374 2061 86 50 191 2210 575671704 575673672 0.000000e+00 2470.0
8 TraesCS1D01G425900 chr1A 82.537 544 66 22 2291 2818 575673679 575674209 4.700000e-123 451.0
9 TraesCS1D01G425900 chr1A 93.889 180 7 1 1 176 575671242 575671421 5.080000e-68 268.0
10 TraesCS1D01G425900 chr3B 76.426 526 101 15 2363 2877 62668428 62668941 2.360000e-66 263.0
11 TraesCS1D01G425900 chr5B 75.542 507 91 24 2392 2877 6667019 6667513 5.190000e-53 219.0
12 TraesCS1D01G425900 chr3D 77.660 376 69 12 2495 2862 94743555 94743187 6.710000e-52 215.0
13 TraesCS1D01G425900 chr5A 79.111 225 38 7 2445 2663 3783356 3783577 2.480000e-31 147.0
14 TraesCS1D01G425900 chr5A 78.667 225 39 7 2445 2663 3712526 3712747 1.150000e-29 141.0
15 TraesCS1D01G425900 chr5A 78.222 225 40 7 2445 2663 3725064 3725285 5.370000e-28 135.0
16 TraesCS1D01G425900 chr5A 77.434 226 41 8 2445 2663 3770230 3770452 3.230000e-25 126.0
17 TraesCS1D01G425900 chrUn 79.581 191 31 6 2476 2663 19209899 19210084 2.500000e-26 130.0
18 TraesCS1D01G425900 chr7D 92.208 77 6 0 2212 2288 112157160 112157236 3.260000e-20 110.0
19 TraesCS1D01G425900 chr6B 91.250 80 7 0 2209 2288 345212382 345212303 3.260000e-20 110.0
20 TraesCS1D01G425900 chr6B 88.312 77 8 1 2208 2283 514482750 514482674 1.180000e-14 91.6
21 TraesCS1D01G425900 chr7A 92.105 76 4 2 2215 2288 712462779 712462854 4.210000e-19 106.0
22 TraesCS1D01G425900 chr7B 91.781 73 6 0 2216 2288 60843916 60843988 5.450000e-18 102.0
23 TraesCS1D01G425900 chr4D 89.873 79 8 0 2210 2288 386482813 386482891 5.450000e-18 102.0
24 TraesCS1D01G425900 chr2D 100.000 30 0 0 1667 1696 611158531 611158560 4.300000e-04 56.5
25 TraesCS1D01G425900 chr2B 100.000 30 0 0 1667 1696 746035396 746035425 4.300000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G425900 chr1D 479357770 479360858 3088 False 5705.0 5705 100.000 1 3089 1 chr1D.!!$F4 3088
1 TraesCS1D01G425900 chr1B 667619009 667621548 2539 False 1435.5 2484 85.742 1 2712 2 chr1B.!!$F1 2711
2 TraesCS1D01G425900 chr1A 575671242 575674209 2967 False 1063.0 2470 88.600 1 2818 3 chr1A.!!$F1 2817
3 TraesCS1D01G425900 chr3B 62668428 62668941 513 False 263.0 263 76.426 2363 2877 1 chr3B.!!$F1 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 1213 0.105408 AAAGCAAAGCAAGGCACCAG 59.895 50.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2517 2858 0.026285 GCGCCAACGATGATGTACAC 59.974 55.0 0.0 0.0 43.93 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 102 1.915983 GGGAGACTGTTCCATCCCC 59.084 63.158 9.10 0.00 44.89 4.81
125 132 0.744874 TCACATGGCTCGCTACCTAC 59.255 55.000 0.00 0.00 0.00 3.18
215 494 6.511444 GCCACTGTCAAGATACTACTAGTACG 60.511 46.154 0.00 0.00 32.84 3.67
295 580 1.305219 GCATGCGTACCTTTGGCTGA 61.305 55.000 0.00 0.00 0.00 4.26
651 950 0.177604 GTCATCCACAGGAGCAGAGG 59.822 60.000 0.00 0.00 34.05 3.69
822 1121 1.480219 GCTAGTGGCGACGCATGTAC 61.480 60.000 23.09 14.01 45.56 2.90
823 1122 1.200474 CTAGTGGCGACGCATGTACG 61.200 60.000 23.09 0.96 45.56 3.67
867 1166 2.600470 TCAAAGCAAAGCAAACCAGG 57.400 45.000 0.00 0.00 0.00 4.45
907 1206 1.260561 CAGCAAGCAAAGCAAAGCAAG 59.739 47.619 0.00 0.00 0.00 4.01
913 1212 0.179078 CAAAGCAAAGCAAGGCACCA 60.179 50.000 0.00 0.00 0.00 4.17
914 1213 0.105408 AAAGCAAAGCAAGGCACCAG 59.895 50.000 0.00 0.00 0.00 4.00
915 1214 0.756442 AAGCAAAGCAAGGCACCAGA 60.756 50.000 0.00 0.00 0.00 3.86
916 1215 0.541296 AGCAAAGCAAGGCACCAGAT 60.541 50.000 0.00 0.00 0.00 2.90
917 1216 0.389426 GCAAAGCAAGGCACCAGATG 60.389 55.000 0.00 0.00 0.00 2.90
997 1299 4.840005 GCCGCTGCCTACCTCCAC 62.840 72.222 0.00 0.00 0.00 4.02
998 1300 3.077556 CCGCTGCCTACCTCCACT 61.078 66.667 0.00 0.00 0.00 4.00
999 1301 2.496817 CGCTGCCTACCTCCACTC 59.503 66.667 0.00 0.00 0.00 3.51
1000 1302 2.055042 CGCTGCCTACCTCCACTCT 61.055 63.158 0.00 0.00 0.00 3.24
1001 1303 1.819905 GCTGCCTACCTCCACTCTC 59.180 63.158 0.00 0.00 0.00 3.20
1002 1304 1.681486 GCTGCCTACCTCCACTCTCC 61.681 65.000 0.00 0.00 0.00 3.71
1003 1305 0.324738 CTGCCTACCTCCACTCTCCA 60.325 60.000 0.00 0.00 0.00 3.86
1016 1318 1.076350 ACTCTCCAGTAGCTCACCACT 59.924 52.381 0.00 0.00 0.00 4.00
1032 1334 1.468908 CCACTAGCTTCACTCTGCTCG 60.469 57.143 0.00 0.00 40.35 5.03
1308 1621 0.556258 TCCTCTGCTTCCTCGGGATA 59.444 55.000 0.00 0.00 0.00 2.59
1362 1675 4.681978 GACACGCCAACCCGAGCT 62.682 66.667 0.00 0.00 0.00 4.09
1374 1687 4.680237 CGAGCTGGACCGCACCAA 62.680 66.667 10.28 0.00 39.59 3.67
1483 1796 4.459089 GGGCACGACCAGCTCCTC 62.459 72.222 0.00 0.00 42.05 3.71
1540 1853 3.787001 CTCTGGAGGAACGGCCCC 61.787 72.222 0.00 0.00 37.37 5.80
1557 1870 3.697747 CCGCGGACCCAAGGTACA 61.698 66.667 24.07 0.00 36.00 2.90
1558 1871 2.433664 CGCGGACCCAAGGTACAC 60.434 66.667 0.00 0.00 36.00 2.90
1559 1872 2.745037 GCGGACCCAAGGTACACA 59.255 61.111 0.00 0.00 36.00 3.72
1560 1873 1.071814 GCGGACCCAAGGTACACAA 59.928 57.895 0.00 0.00 36.00 3.33
1561 1874 0.535553 GCGGACCCAAGGTACACAAA 60.536 55.000 0.00 0.00 36.00 2.83
1565 1878 3.227614 GGACCCAAGGTACACAAACATT 58.772 45.455 0.00 0.00 36.34 2.71
1566 1879 3.639561 GGACCCAAGGTACACAAACATTT 59.360 43.478 0.00 0.00 36.34 2.32
1575 1888 1.883926 ACACAAACATTTACCCTCGCC 59.116 47.619 0.00 0.00 0.00 5.54
1579 1892 1.762708 AACATTTACCCTCGCCCATG 58.237 50.000 0.00 0.00 0.00 3.66
1592 1906 0.524862 GCCCATGCTCACTTTGTCAG 59.475 55.000 0.00 0.00 33.53 3.51
1593 1907 1.901591 CCCATGCTCACTTTGTCAGT 58.098 50.000 0.00 0.00 35.35 3.41
1602 1916 1.070309 CACTTTGTCAGTGCGCTCTTC 60.070 52.381 9.70 6.84 46.70 2.87
1603 1917 1.220529 CTTTGTCAGTGCGCTCTTCA 58.779 50.000 9.70 9.37 0.00 3.02
1605 1919 1.220529 TTGTCAGTGCGCTCTTCAAG 58.779 50.000 9.70 0.00 0.00 3.02
1608 1922 1.989165 GTCAGTGCGCTCTTCAAGTAG 59.011 52.381 9.70 0.00 0.00 2.57
1609 1923 0.718343 CAGTGCGCTCTTCAAGTAGC 59.282 55.000 9.70 0.18 35.33 3.58
1611 1925 0.718343 GTGCGCTCTTCAAGTAGCTG 59.282 55.000 9.73 3.32 36.56 4.24
1612 1926 1.016130 TGCGCTCTTCAAGTAGCTGC 61.016 55.000 9.73 0.00 38.14 5.25
1614 1928 1.432514 CGCTCTTCAAGTAGCTGCAA 58.567 50.000 4.12 0.00 36.56 4.08
1617 1931 2.159234 GCTCTTCAAGTAGCTGCAACTG 59.841 50.000 4.12 0.00 35.80 3.16
1618 1932 2.146342 TCTTCAAGTAGCTGCAACTGC 58.854 47.619 4.12 0.00 42.50 4.40
1619 1933 0.867746 TTCAAGTAGCTGCAACTGCG 59.132 50.000 4.12 0.00 45.83 5.18
1620 1934 0.249868 TCAAGTAGCTGCAACTGCGT 60.250 50.000 4.12 0.00 45.83 5.24
1624 1938 0.385974 GTAGCTGCAACTGCGTTTGG 60.386 55.000 1.02 0.00 45.83 3.28
1625 1939 0.533978 TAGCTGCAACTGCGTTTGGA 60.534 50.000 1.02 0.00 45.83 3.53
1629 1943 1.001487 CTGCAACTGCGTTTGGATTGA 60.001 47.619 0.00 0.00 45.83 2.57
1630 1944 1.612950 TGCAACTGCGTTTGGATTGAT 59.387 42.857 0.00 0.00 45.83 2.57
1631 1945 2.253603 GCAACTGCGTTTGGATTGATC 58.746 47.619 0.00 0.00 0.00 2.92
1632 1946 2.095059 GCAACTGCGTTTGGATTGATCT 60.095 45.455 0.00 0.00 0.00 2.75
1633 1947 3.612479 GCAACTGCGTTTGGATTGATCTT 60.612 43.478 0.00 0.00 0.00 2.40
1634 1948 4.161333 CAACTGCGTTTGGATTGATCTTC 58.839 43.478 0.00 0.00 0.00 2.87
1635 1949 2.416547 ACTGCGTTTGGATTGATCTTCG 59.583 45.455 0.00 0.00 0.00 3.79
1636 1950 2.416547 CTGCGTTTGGATTGATCTTCGT 59.583 45.455 0.00 0.00 0.00 3.85
1637 1951 2.811431 TGCGTTTGGATTGATCTTCGTT 59.189 40.909 0.00 0.00 0.00 3.85
1638 1952 3.163594 GCGTTTGGATTGATCTTCGTTG 58.836 45.455 0.00 0.00 0.00 4.10
1639 1953 3.163594 CGTTTGGATTGATCTTCGTTGC 58.836 45.455 0.00 0.00 0.00 4.17
1640 1954 3.501950 GTTTGGATTGATCTTCGTTGCC 58.498 45.455 0.00 0.00 0.00 4.52
1641 1955 2.488204 TGGATTGATCTTCGTTGCCA 57.512 45.000 0.00 0.00 0.00 4.92
1642 1956 3.003394 TGGATTGATCTTCGTTGCCAT 57.997 42.857 0.00 0.00 0.00 4.40
1643 1957 2.684374 TGGATTGATCTTCGTTGCCATG 59.316 45.455 0.00 0.00 0.00 3.66
1644 1958 2.684881 GGATTGATCTTCGTTGCCATGT 59.315 45.455 0.00 0.00 0.00 3.21
1645 1959 3.876914 GGATTGATCTTCGTTGCCATGTA 59.123 43.478 0.00 0.00 0.00 2.29
1646 1960 4.516698 GGATTGATCTTCGTTGCCATGTAT 59.483 41.667 0.00 0.00 0.00 2.29
1647 1961 4.880886 TTGATCTTCGTTGCCATGTATG 57.119 40.909 0.00 0.00 0.00 2.39
1648 1962 3.872696 TGATCTTCGTTGCCATGTATGT 58.127 40.909 0.00 0.00 0.00 2.29
1649 1963 3.622612 TGATCTTCGTTGCCATGTATGTG 59.377 43.478 0.00 0.00 0.00 3.21
1650 1964 1.737236 TCTTCGTTGCCATGTATGTGC 59.263 47.619 0.00 0.00 0.00 4.57
1651 1965 1.468127 CTTCGTTGCCATGTATGTGCA 59.532 47.619 0.00 4.59 34.00 4.57
1652 1966 1.748950 TCGTTGCCATGTATGTGCAT 58.251 45.000 0.00 0.00 35.18 3.96
1653 1967 2.090760 TCGTTGCCATGTATGTGCATT 58.909 42.857 0.00 0.00 35.18 3.56
1654 1968 2.159407 TCGTTGCCATGTATGTGCATTG 60.159 45.455 0.00 5.52 35.18 2.82
1655 1969 2.415759 CGTTGCCATGTATGTGCATTGT 60.416 45.455 0.00 0.00 35.18 2.71
1656 1970 3.181397 GTTGCCATGTATGTGCATTGTC 58.819 45.455 0.00 0.00 35.18 3.18
2125 2444 6.638468 GCAAGCCTGCTAAACATATGAATTAC 59.362 38.462 10.38 4.77 45.74 1.89
2126 2445 7.469181 GCAAGCCTGCTAAACATATGAATTACT 60.469 37.037 10.38 0.00 45.74 2.24
2128 2447 9.799106 AAGCCTGCTAAACATATGAATTACTAT 57.201 29.630 10.38 0.00 0.00 2.12
2129 2448 9.224267 AGCCTGCTAAACATATGAATTACTATG 57.776 33.333 10.38 5.57 0.00 2.23
2130 2449 9.219603 GCCTGCTAAACATATGAATTACTATGA 57.780 33.333 10.38 0.00 0.00 2.15
2210 2545 3.689649 GCTATGAACTTCGTCCCACAATT 59.310 43.478 0.00 0.00 0.00 2.32
2211 2546 4.873827 GCTATGAACTTCGTCCCACAATTA 59.126 41.667 0.00 0.00 0.00 1.40
2212 2547 5.527582 GCTATGAACTTCGTCCCACAATTAT 59.472 40.000 0.00 0.00 0.00 1.28
2213 2548 6.292919 GCTATGAACTTCGTCCCACAATTATC 60.293 42.308 0.00 0.00 0.00 1.75
2214 2549 3.930229 TGAACTTCGTCCCACAATTATCG 59.070 43.478 0.00 0.00 0.00 2.92
2215 2550 3.880047 ACTTCGTCCCACAATTATCGA 57.120 42.857 0.00 0.00 0.00 3.59
2216 2551 4.196626 ACTTCGTCCCACAATTATCGAA 57.803 40.909 0.00 0.00 36.26 3.71
2217 2552 4.571919 ACTTCGTCCCACAATTATCGAAA 58.428 39.130 0.00 0.00 36.99 3.46
2218 2553 4.998672 ACTTCGTCCCACAATTATCGAAAA 59.001 37.500 0.00 0.00 36.99 2.29
2219 2554 5.470777 ACTTCGTCCCACAATTATCGAAAAA 59.529 36.000 0.00 0.00 36.99 1.94
2220 2555 5.539582 TCGTCCCACAATTATCGAAAAAG 57.460 39.130 0.00 0.00 0.00 2.27
2221 2556 4.393680 TCGTCCCACAATTATCGAAAAAGG 59.606 41.667 0.00 0.00 0.00 3.11
2222 2557 4.421058 GTCCCACAATTATCGAAAAAGGC 58.579 43.478 0.00 0.00 0.00 4.35
2223 2558 4.157840 GTCCCACAATTATCGAAAAAGGCT 59.842 41.667 0.00 0.00 0.00 4.58
2224 2559 4.770010 TCCCACAATTATCGAAAAAGGCTT 59.230 37.500 0.00 0.00 0.00 4.35
2225 2560 5.245075 TCCCACAATTATCGAAAAAGGCTTT 59.755 36.000 6.68 6.68 0.00 3.51
2226 2561 5.576774 CCCACAATTATCGAAAAAGGCTTTC 59.423 40.000 13.76 0.41 0.00 2.62
2244 2579 6.484818 GCTTTCGCCCCGTTTTATATATAA 57.515 37.500 0.81 0.81 0.00 0.98
2245 2580 6.901265 GCTTTCGCCCCGTTTTATATATAAA 58.099 36.000 12.90 12.90 0.00 1.40
2246 2581 7.019418 GCTTTCGCCCCGTTTTATATATAAAG 58.981 38.462 15.65 7.49 34.13 1.85
2247 2582 6.484818 TTCGCCCCGTTTTATATATAAAGC 57.515 37.500 17.54 17.54 34.13 3.51
2248 2583 5.549347 TCGCCCCGTTTTATATATAAAGCA 58.451 37.500 23.58 8.55 34.42 3.91
2249 2584 5.409214 TCGCCCCGTTTTATATATAAAGCAC 59.591 40.000 23.58 16.43 34.42 4.40
2250 2585 5.391203 CGCCCCGTTTTATATATAAAGCACC 60.391 44.000 23.58 12.12 34.42 5.01
2251 2586 5.391203 GCCCCGTTTTATATATAAAGCACCG 60.391 44.000 23.58 18.86 34.42 4.94
2252 2587 5.933463 CCCCGTTTTATATATAAAGCACCGA 59.067 40.000 23.58 6.83 34.42 4.69
2253 2588 6.596497 CCCCGTTTTATATATAAAGCACCGAT 59.404 38.462 23.58 0.00 34.42 4.18
2254 2589 7.201582 CCCCGTTTTATATATAAAGCACCGATC 60.202 40.741 23.58 8.22 34.42 3.69
2255 2590 7.332430 CCCGTTTTATATATAAAGCACCGATCA 59.668 37.037 23.58 5.13 34.42 2.92
2256 2591 8.879759 CCGTTTTATATATAAAGCACCGATCAT 58.120 33.333 23.58 0.00 34.42 2.45
2266 2601 4.536364 AGCACCGATCATTAAACATTCG 57.464 40.909 0.00 0.00 0.00 3.34
2271 2606 5.977171 CCGATCATTAAACATTCGGTACA 57.023 39.130 9.89 0.00 43.27 2.90
2272 2607 6.352682 CCGATCATTAAACATTCGGTACAA 57.647 37.500 9.89 0.00 43.27 2.41
2273 2608 6.777101 CCGATCATTAAACATTCGGTACAAA 58.223 36.000 9.89 0.00 43.27 2.83
2274 2609 6.685403 CCGATCATTAAACATTCGGTACAAAC 59.315 38.462 9.89 0.00 43.27 2.93
2275 2610 7.237871 CGATCATTAAACATTCGGTACAAACA 58.762 34.615 0.00 0.00 0.00 2.83
2276 2611 7.215568 CGATCATTAAACATTCGGTACAAACAC 59.784 37.037 0.00 0.00 0.00 3.32
2277 2612 7.260558 TCATTAAACATTCGGTACAAACACA 57.739 32.000 0.00 0.00 0.00 3.72
2278 2613 7.133513 TCATTAAACATTCGGTACAAACACAC 58.866 34.615 0.00 0.00 0.00 3.82
2279 2614 3.595709 AACATTCGGTACAAACACACG 57.404 42.857 0.00 0.00 0.00 4.49
2280 2615 2.823984 ACATTCGGTACAAACACACGA 58.176 42.857 0.00 0.00 0.00 4.35
2281 2616 2.540931 ACATTCGGTACAAACACACGAC 59.459 45.455 0.00 0.00 32.85 4.34
2282 2617 2.290531 TTCGGTACAAACACACGACA 57.709 45.000 0.00 0.00 32.85 4.35
2283 2618 1.558741 TCGGTACAAACACACGACAC 58.441 50.000 0.00 0.00 0.00 3.67
2284 2619 0.578211 CGGTACAAACACACGACACC 59.422 55.000 0.00 0.00 0.00 4.16
2285 2620 0.578211 GGTACAAACACACGACACCG 59.422 55.000 0.00 0.00 42.50 4.94
2286 2621 0.042794 GTACAAACACACGACACCGC 60.043 55.000 0.00 0.00 39.95 5.68
2287 2622 0.459759 TACAAACACACGACACCGCA 60.460 50.000 0.00 0.00 39.95 5.69
2288 2623 1.092921 ACAAACACACGACACCGCAT 61.093 50.000 0.00 0.00 39.95 4.73
2289 2624 0.028770 CAAACACACGACACCGCATT 59.971 50.000 0.00 0.00 39.95 3.56
2292 2627 0.602638 ACACACGACACCGCATTCAT 60.603 50.000 0.00 0.00 39.95 2.57
2358 2693 1.399727 CGTTGTTTTGGCCGTGATCTC 60.400 52.381 0.00 0.00 0.00 2.75
2360 2695 1.134694 GTTTTGGCCGTGATCTCGC 59.865 57.895 11.58 7.25 0.00 5.03
2383 2722 2.230508 GGGAAATTTTTGGTCCGACCTC 59.769 50.000 18.54 5.73 39.58 3.85
2443 2784 1.022735 TGGAGCTATCGTCGTCTTCC 58.977 55.000 0.00 0.00 0.00 3.46
2466 2807 1.137086 CTCGAGGAATTCCGATGGTGT 59.863 52.381 18.82 0.00 42.08 4.16
2470 2811 0.394352 GGAATTCCGATGGTGTGGCT 60.394 55.000 9.17 0.00 0.00 4.75
2537 2916 1.272715 GTACATCATCGTTGGCGCG 59.727 57.895 0.00 0.00 38.14 6.86
2544 2923 4.778415 TCGTTGGCGCGCTCTCTC 62.778 66.667 32.29 14.61 38.14 3.20
2566 2945 2.220313 ACGACGCCTTATCTAGGTCTC 58.780 52.381 0.00 0.00 46.61 3.36
2613 2993 3.508793 ACTTTCTCTTGATGCAATGGGTG 59.491 43.478 0.00 0.00 0.00 4.61
2614 2994 3.438216 TTCTCTTGATGCAATGGGTGA 57.562 42.857 0.00 0.00 0.00 4.02
2628 3008 1.079336 GGTGAGGGTACGTTGCTCC 60.079 63.158 0.00 0.00 0.00 4.70
2668 3049 8.237267 GTCTTGTCATATTGTAGAGGTTTTTGG 58.763 37.037 0.00 0.00 0.00 3.28
2670 3051 6.007076 TGTCATATTGTAGAGGTTTTTGGCA 58.993 36.000 0.00 0.00 0.00 4.92
2681 3062 3.136260 AGGTTTTTGGCATTGGTTGTGAT 59.864 39.130 0.00 0.00 0.00 3.06
2714 3096 1.542915 CTCTGTGGTTTGCCTCATTGG 59.457 52.381 0.00 0.00 37.59 3.16
2730 3112 2.228545 TTGGCATTGGCATGAGGTTA 57.771 45.000 14.21 0.00 43.71 2.85
2748 3130 4.102681 AGGTTAGTCTAGGTGTTGCTTGTT 59.897 41.667 0.00 0.00 0.00 2.83
2759 3141 3.245048 GTGTTGCTTGTTTTGTGGTATGC 59.755 43.478 0.00 0.00 0.00 3.14
2764 3147 2.791383 TGTTTTGTGGTATGCTGTGC 57.209 45.000 0.00 0.00 0.00 4.57
2801 3184 5.609533 TCCTAGTGATTAGCCTTGTAACC 57.390 43.478 0.00 0.00 0.00 2.85
2802 3185 5.278061 TCCTAGTGATTAGCCTTGTAACCT 58.722 41.667 0.00 0.00 0.00 3.50
2803 3186 5.128827 TCCTAGTGATTAGCCTTGTAACCTG 59.871 44.000 0.00 0.00 0.00 4.00
2818 3204 1.299648 CCTGAAGGCGTTGGATCCA 59.700 57.895 11.44 11.44 0.00 3.41
2820 3206 0.745845 CTGAAGGCGTTGGATCCAGG 60.746 60.000 15.53 12.26 0.00 4.45
2823 3209 0.112412 AAGGCGTTGGATCCAGGTTT 59.888 50.000 15.53 7.55 0.00 3.27
2824 3210 0.988832 AGGCGTTGGATCCAGGTTTA 59.011 50.000 15.53 0.00 0.00 2.01
2825 3211 1.564348 AGGCGTTGGATCCAGGTTTAT 59.436 47.619 15.53 0.00 0.00 1.40
2829 3215 4.399934 GGCGTTGGATCCAGGTTTATTTTA 59.600 41.667 15.53 0.00 0.00 1.52
2830 3216 5.068591 GGCGTTGGATCCAGGTTTATTTTAT 59.931 40.000 15.53 0.00 0.00 1.40
2841 3227 7.280205 TCCAGGTTTATTTTATCGCTTCTTCTC 59.720 37.037 0.00 0.00 0.00 2.87
2848 3234 7.792374 ATTTTATCGCTTCTTCTCTAATGCA 57.208 32.000 0.00 0.00 0.00 3.96
2855 3241 7.157347 TCGCTTCTTCTCTAATGCAATGATAT 58.843 34.615 0.00 0.00 0.00 1.63
2857 3243 7.022384 GCTTCTTCTCTAATGCAATGATATGC 58.978 38.462 0.00 0.00 46.58 3.14
2878 3264 2.908688 TGCTTATGCGCATTCTAGGA 57.091 45.000 30.42 20.52 43.34 2.94
2879 3265 3.192541 TGCTTATGCGCATTCTAGGAA 57.807 42.857 30.42 14.44 43.34 3.36
2880 3266 2.872245 TGCTTATGCGCATTCTAGGAAC 59.128 45.455 30.42 10.14 43.34 3.62
2881 3267 3.134458 GCTTATGCGCATTCTAGGAACT 58.866 45.455 30.42 2.58 46.37 3.01
2882 3268 3.185391 GCTTATGCGCATTCTAGGAACTC 59.815 47.826 30.42 6.89 41.75 3.01
2883 3269 2.988010 ATGCGCATTCTAGGAACTCA 57.012 45.000 19.28 0.00 41.75 3.41
2884 3270 2.010145 TGCGCATTCTAGGAACTCAC 57.990 50.000 5.66 0.00 41.75 3.51
2885 3271 1.275010 TGCGCATTCTAGGAACTCACA 59.725 47.619 5.66 0.00 41.75 3.58
2886 3272 2.289382 TGCGCATTCTAGGAACTCACAA 60.289 45.455 5.66 0.00 41.75 3.33
2887 3273 2.349886 GCGCATTCTAGGAACTCACAAG 59.650 50.000 0.30 0.00 41.75 3.16
2888 3274 3.589988 CGCATTCTAGGAACTCACAAGT 58.410 45.455 0.00 0.00 41.75 3.16
2890 3276 4.452455 CGCATTCTAGGAACTCACAAGTTT 59.548 41.667 0.00 0.00 45.80 2.66
2891 3277 5.049405 CGCATTCTAGGAACTCACAAGTTTT 60.049 40.000 0.00 0.00 45.80 2.43
2892 3278 6.147164 CGCATTCTAGGAACTCACAAGTTTTA 59.853 38.462 0.00 0.00 45.80 1.52
2893 3279 7.307751 CGCATTCTAGGAACTCACAAGTTTTAA 60.308 37.037 0.00 0.00 45.80 1.52
2894 3280 7.803659 GCATTCTAGGAACTCACAAGTTTTAAC 59.196 37.037 0.00 0.00 45.80 2.01
2895 3281 9.057089 CATTCTAGGAACTCACAAGTTTTAACT 57.943 33.333 0.00 0.00 45.80 2.24
2896 3282 9.628500 ATTCTAGGAACTCACAAGTTTTAACTT 57.372 29.630 2.10 2.10 45.80 2.66
2897 3283 9.457436 TTCTAGGAACTCACAAGTTTTAACTTT 57.543 29.630 5.16 0.00 45.80 2.66
2898 3284 9.457436 TCTAGGAACTCACAAGTTTTAACTTTT 57.543 29.630 5.16 0.00 45.80 2.27
2919 3305 5.873146 TTTTTCGAGGGTAAATGGGTTTT 57.127 34.783 0.00 0.00 0.00 2.43
2920 3306 6.973460 TTTTTCGAGGGTAAATGGGTTTTA 57.027 33.333 0.00 0.00 0.00 1.52
2921 3307 7.541916 TTTTTCGAGGGTAAATGGGTTTTAT 57.458 32.000 0.00 0.00 32.56 1.40
2922 3308 7.541916 TTTTCGAGGGTAAATGGGTTTTATT 57.458 32.000 0.00 0.00 32.56 1.40
2923 3309 7.541916 TTTCGAGGGTAAATGGGTTTTATTT 57.458 32.000 0.00 0.00 32.56 1.40
2924 3310 6.762702 TCGAGGGTAAATGGGTTTTATTTC 57.237 37.500 0.00 0.00 32.56 2.17
2925 3311 6.246919 TCGAGGGTAAATGGGTTTTATTTCA 58.753 36.000 0.00 0.00 32.56 2.69
2926 3312 6.893005 TCGAGGGTAAATGGGTTTTATTTCAT 59.107 34.615 0.00 0.00 32.56 2.57
2927 3313 8.053963 TCGAGGGTAAATGGGTTTTATTTCATA 58.946 33.333 0.00 0.00 32.56 2.15
2928 3314 8.688151 CGAGGGTAAATGGGTTTTATTTCATAA 58.312 33.333 0.00 0.00 32.56 1.90
2929 3315 9.811995 GAGGGTAAATGGGTTTTATTTCATAAC 57.188 33.333 0.00 0.00 32.56 1.89
2930 3316 8.764558 AGGGTAAATGGGTTTTATTTCATAACC 58.235 33.333 0.00 0.00 40.44 2.85
2931 3317 7.707464 GGGTAAATGGGTTTTATTTCATAACCG 59.293 37.037 0.00 0.00 41.75 4.44
2932 3318 8.252417 GGTAAATGGGTTTTATTTCATAACCGT 58.748 33.333 0.00 0.00 41.75 4.83
2952 3338 5.718649 CGTAGGATTACAATCAAGTGTGG 57.281 43.478 4.45 0.00 37.15 4.17
2953 3339 4.570772 CGTAGGATTACAATCAAGTGTGGG 59.429 45.833 4.45 0.00 37.15 4.61
2954 3340 4.927267 AGGATTACAATCAAGTGTGGGA 57.073 40.909 4.45 0.00 37.15 4.37
2955 3341 5.255397 AGGATTACAATCAAGTGTGGGAA 57.745 39.130 4.45 0.00 37.15 3.97
2956 3342 5.256474 AGGATTACAATCAAGTGTGGGAAG 58.744 41.667 4.45 0.00 37.15 3.46
2957 3343 5.010282 GGATTACAATCAAGTGTGGGAAGT 58.990 41.667 4.45 0.00 37.15 3.01
2958 3344 5.106157 GGATTACAATCAAGTGTGGGAAGTG 60.106 44.000 4.45 0.00 37.15 3.16
2959 3345 1.956477 ACAATCAAGTGTGGGAAGTGC 59.044 47.619 0.00 0.00 0.00 4.40
2960 3346 1.270550 CAATCAAGTGTGGGAAGTGCC 59.729 52.381 0.00 0.00 0.00 5.01
2961 3347 0.773644 ATCAAGTGTGGGAAGTGCCT 59.226 50.000 0.00 0.00 36.66 4.75
2962 3348 0.550914 TCAAGTGTGGGAAGTGCCTT 59.449 50.000 0.00 0.00 36.66 4.35
2963 3349 0.670162 CAAGTGTGGGAAGTGCCTTG 59.330 55.000 0.00 0.00 36.66 3.61
2964 3350 0.550914 AAGTGTGGGAAGTGCCTTGA 59.449 50.000 0.00 0.00 36.66 3.02
2965 3351 0.773644 AGTGTGGGAAGTGCCTTGAT 59.226 50.000 0.00 0.00 36.66 2.57
2966 3352 1.985159 AGTGTGGGAAGTGCCTTGATA 59.015 47.619 0.00 0.00 36.66 2.15
2967 3353 2.578021 AGTGTGGGAAGTGCCTTGATAT 59.422 45.455 0.00 0.00 36.66 1.63
2968 3354 3.780294 AGTGTGGGAAGTGCCTTGATATA 59.220 43.478 0.00 0.00 36.66 0.86
2969 3355 4.413520 AGTGTGGGAAGTGCCTTGATATAT 59.586 41.667 0.00 0.00 36.66 0.86
2970 3356 4.516698 GTGTGGGAAGTGCCTTGATATATG 59.483 45.833 0.00 0.00 36.66 1.78
2971 3357 4.074970 GTGGGAAGTGCCTTGATATATGG 58.925 47.826 0.00 0.00 36.66 2.74
2972 3358 3.721575 TGGGAAGTGCCTTGATATATGGT 59.278 43.478 0.00 0.00 36.66 3.55
2973 3359 4.074970 GGGAAGTGCCTTGATATATGGTG 58.925 47.826 0.00 0.00 36.66 4.17
2974 3360 4.074970 GGAAGTGCCTTGATATATGGTGG 58.925 47.826 0.00 0.00 0.00 4.61
2975 3361 4.446311 GGAAGTGCCTTGATATATGGTGGT 60.446 45.833 0.00 0.00 0.00 4.16
2976 3362 4.796110 AGTGCCTTGATATATGGTGGTT 57.204 40.909 0.00 0.00 0.00 3.67
2977 3363 4.718961 AGTGCCTTGATATATGGTGGTTC 58.281 43.478 0.00 0.00 0.00 3.62
2978 3364 4.413520 AGTGCCTTGATATATGGTGGTTCT 59.586 41.667 0.00 0.00 0.00 3.01
2979 3365 4.757149 GTGCCTTGATATATGGTGGTTCTC 59.243 45.833 0.00 0.00 0.00 2.87
2980 3366 4.660303 TGCCTTGATATATGGTGGTTCTCT 59.340 41.667 0.00 0.00 0.00 3.10
2981 3367 4.999950 GCCTTGATATATGGTGGTTCTCTG 59.000 45.833 0.00 0.00 0.00 3.35
2982 3368 5.455326 GCCTTGATATATGGTGGTTCTCTGT 60.455 44.000 0.00 0.00 0.00 3.41
2983 3369 5.994054 CCTTGATATATGGTGGTTCTCTGTG 59.006 44.000 0.00 0.00 0.00 3.66
2984 3370 6.408548 CCTTGATATATGGTGGTTCTCTGTGT 60.409 42.308 0.00 0.00 0.00 3.72
2985 3371 7.202001 CCTTGATATATGGTGGTTCTCTGTGTA 60.202 40.741 0.00 0.00 0.00 2.90
2986 3372 7.290110 TGATATATGGTGGTTCTCTGTGTAG 57.710 40.000 0.00 0.00 0.00 2.74
2987 3373 2.770164 ATGGTGGTTCTCTGTGTAGC 57.230 50.000 0.00 0.00 0.00 3.58
2988 3374 0.685097 TGGTGGTTCTCTGTGTAGCC 59.315 55.000 0.00 0.00 0.00 3.93
2989 3375 0.685097 GGTGGTTCTCTGTGTAGCCA 59.315 55.000 0.00 0.00 0.00 4.75
2990 3376 1.279271 GGTGGTTCTCTGTGTAGCCAT 59.721 52.381 0.00 0.00 0.00 4.40
2991 3377 2.500098 GGTGGTTCTCTGTGTAGCCATA 59.500 50.000 0.00 0.00 0.00 2.74
2992 3378 3.134804 GGTGGTTCTCTGTGTAGCCATAT 59.865 47.826 0.00 0.00 0.00 1.78
2993 3379 4.372656 GTGGTTCTCTGTGTAGCCATATC 58.627 47.826 0.00 0.00 0.00 1.63
2994 3380 3.068165 TGGTTCTCTGTGTAGCCATATCG 59.932 47.826 0.00 0.00 0.00 2.92
2995 3381 3.053455 GTTCTCTGTGTAGCCATATCGC 58.947 50.000 0.00 0.00 0.00 4.58
2996 3382 2.306847 TCTCTGTGTAGCCATATCGCA 58.693 47.619 0.00 0.00 0.00 5.10
2997 3383 2.034685 TCTCTGTGTAGCCATATCGCAC 59.965 50.000 0.00 0.00 0.00 5.34
2998 3384 2.031870 TCTGTGTAGCCATATCGCACT 58.968 47.619 0.00 0.00 0.00 4.40
2999 3385 3.219281 TCTGTGTAGCCATATCGCACTA 58.781 45.455 0.00 0.00 0.00 2.74
3000 3386 3.004419 TCTGTGTAGCCATATCGCACTAC 59.996 47.826 0.00 0.00 36.40 2.73
3001 3387 2.287368 TGTGTAGCCATATCGCACTACG 60.287 50.000 0.00 0.00 45.62 3.51
3015 3401 4.761910 GCACTACGATTGTACATCACTG 57.238 45.455 0.00 0.00 0.00 3.66
3016 3402 3.551890 GCACTACGATTGTACATCACTGG 59.448 47.826 0.00 0.00 0.00 4.00
3017 3403 4.744570 CACTACGATTGTACATCACTGGT 58.255 43.478 0.00 0.00 0.00 4.00
3018 3404 4.798907 CACTACGATTGTACATCACTGGTC 59.201 45.833 0.00 0.00 0.00 4.02
3019 3405 3.953712 ACGATTGTACATCACTGGTCA 57.046 42.857 0.00 0.00 0.00 4.02
3020 3406 4.265904 ACGATTGTACATCACTGGTCAA 57.734 40.909 0.00 0.00 0.00 3.18
3021 3407 4.832248 ACGATTGTACATCACTGGTCAAT 58.168 39.130 0.00 0.00 34.71 2.57
3022 3408 5.245531 ACGATTGTACATCACTGGTCAATT 58.754 37.500 0.00 0.00 33.33 2.32
3023 3409 5.705441 ACGATTGTACATCACTGGTCAATTT 59.295 36.000 0.00 0.00 33.33 1.82
3024 3410 6.023435 CGATTGTACATCACTGGTCAATTTG 58.977 40.000 0.00 0.00 33.33 2.32
3025 3411 4.764679 TGTACATCACTGGTCAATTTGC 57.235 40.909 0.00 0.00 0.00 3.68
3026 3412 4.397420 TGTACATCACTGGTCAATTTGCT 58.603 39.130 0.00 0.00 0.00 3.91
3027 3413 5.555966 TGTACATCACTGGTCAATTTGCTA 58.444 37.500 0.00 0.00 0.00 3.49
3028 3414 6.179756 TGTACATCACTGGTCAATTTGCTAT 58.820 36.000 0.00 0.00 0.00 2.97
3029 3415 5.824904 ACATCACTGGTCAATTTGCTATC 57.175 39.130 0.00 0.00 0.00 2.08
3030 3416 5.503927 ACATCACTGGTCAATTTGCTATCT 58.496 37.500 0.00 0.00 0.00 1.98
3031 3417 5.948162 ACATCACTGGTCAATTTGCTATCTT 59.052 36.000 0.00 0.00 0.00 2.40
3032 3418 7.112122 ACATCACTGGTCAATTTGCTATCTTA 58.888 34.615 0.00 0.00 0.00 2.10
3033 3419 7.776969 ACATCACTGGTCAATTTGCTATCTTAT 59.223 33.333 0.00 0.00 0.00 1.73
3034 3420 8.627403 CATCACTGGTCAATTTGCTATCTTATT 58.373 33.333 0.00 0.00 0.00 1.40
3035 3421 8.579850 TCACTGGTCAATTTGCTATCTTATTT 57.420 30.769 0.00 0.00 0.00 1.40
3036 3422 9.023962 TCACTGGTCAATTTGCTATCTTATTTT 57.976 29.630 0.00 0.00 0.00 1.82
3037 3423 9.079833 CACTGGTCAATTTGCTATCTTATTTTG 57.920 33.333 0.00 0.00 0.00 2.44
3038 3424 8.806146 ACTGGTCAATTTGCTATCTTATTTTGT 58.194 29.630 0.00 0.00 0.00 2.83
3039 3425 9.643693 CTGGTCAATTTGCTATCTTATTTTGTT 57.356 29.630 0.00 0.00 0.00 2.83
3040 3426 9.638239 TGGTCAATTTGCTATCTTATTTTGTTC 57.362 29.630 0.00 0.00 0.00 3.18
3041 3427 9.638239 GGTCAATTTGCTATCTTATTTTGTTCA 57.362 29.630 0.00 0.00 0.00 3.18
3058 3444 8.792830 TTTTGTTCATGTCTTATCTCCTAAGG 57.207 34.615 0.00 0.00 37.91 2.69
3059 3445 7.733773 TTGTTCATGTCTTATCTCCTAAGGA 57.266 36.000 0.00 0.00 37.91 3.36
3060 3446 7.733773 TGTTCATGTCTTATCTCCTAAGGAA 57.266 36.000 0.00 0.00 37.91 3.36
3061 3447 8.324191 TGTTCATGTCTTATCTCCTAAGGAAT 57.676 34.615 0.00 0.00 37.91 3.01
3062 3448 9.434275 TGTTCATGTCTTATCTCCTAAGGAATA 57.566 33.333 0.00 0.00 37.91 1.75
3068 3454 8.925338 TGTCTTATCTCCTAAGGAATAAACTCC 58.075 37.037 0.00 0.00 37.91 3.85
3069 3455 8.925338 GTCTTATCTCCTAAGGAATAAACTCCA 58.075 37.037 0.00 0.00 37.91 3.86
3070 3456 9.676129 TCTTATCTCCTAAGGAATAAACTCCAT 57.324 33.333 0.00 0.00 37.91 3.41
3074 3460 9.997172 ATCTCCTAAGGAATAAACTCCATTTTT 57.003 29.630 0.00 0.00 38.02 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
215 494 1.245376 CCGGGCCTAGCTAGCTACTC 61.245 65.000 20.67 10.99 0.00 2.59
354 640 2.159612 TGTCATATATAGCGACGGCGAC 60.160 50.000 18.90 5.74 46.35 5.19
355 641 2.078392 TGTCATATATAGCGACGGCGA 58.922 47.619 18.90 0.00 46.35 5.54
356 642 2.174764 GTGTCATATATAGCGACGGCG 58.825 52.381 6.12 6.12 46.35 6.46
390 682 2.644992 GTTGGGAAACTGCCTGCG 59.355 61.111 0.00 0.00 0.00 5.18
503 802 0.319986 GCTTATCCCGGAGCTACAGC 60.320 60.000 0.73 0.00 42.49 4.40
504 803 0.039074 CGCTTATCCCGGAGCTACAG 60.039 60.000 0.73 0.00 36.76 2.74
611 910 3.437795 CTTGGCTCCGCTTGGCTG 61.438 66.667 0.00 0.00 0.00 4.85
612 911 3.640407 TCTTGGCTCCGCTTGGCT 61.640 61.111 0.00 0.00 0.00 4.75
613 912 3.435186 GTCTTGGCTCCGCTTGGC 61.435 66.667 0.00 0.00 0.00 4.52
620 919 0.615331 TGGATGACAGTCTTGGCTCC 59.385 55.000 1.31 1.66 33.02 4.70
867 1166 1.340568 GGAGTGGTAGTAATCGAGGCC 59.659 57.143 0.00 0.00 0.00 5.19
907 1206 1.544982 CCATCCATCTCATCTGGTGCC 60.545 57.143 0.00 0.00 35.19 5.01
913 1212 4.448720 TTTGCATCCATCCATCTCATCT 57.551 40.909 0.00 0.00 0.00 2.90
914 1213 5.010933 AGATTTGCATCCATCCATCTCATC 58.989 41.667 0.00 0.00 0.00 2.92
915 1214 4.999310 AGATTTGCATCCATCCATCTCAT 58.001 39.130 0.00 0.00 0.00 2.90
916 1215 4.448720 AGATTTGCATCCATCCATCTCA 57.551 40.909 0.00 0.00 0.00 3.27
917 1216 6.657966 TGATTAGATTTGCATCCATCCATCTC 59.342 38.462 0.00 0.00 0.00 2.75
997 1299 1.846007 AGTGGTGAGCTACTGGAGAG 58.154 55.000 0.00 0.00 35.02 3.20
998 1300 2.946341 GCTAGTGGTGAGCTACTGGAGA 60.946 54.545 2.18 0.00 36.95 3.71
999 1301 1.407258 GCTAGTGGTGAGCTACTGGAG 59.593 57.143 2.18 0.00 36.95 3.86
1000 1302 1.475403 GCTAGTGGTGAGCTACTGGA 58.525 55.000 2.18 0.00 36.95 3.86
1016 1318 0.967887 AGCCGAGCAGAGTGAAGCTA 60.968 55.000 0.00 0.00 42.04 3.32
1092 1396 4.271291 GGGCGCTCTGTTATTTAAAGAGAG 59.729 45.833 7.64 7.37 39.91 3.20
1195 1508 2.599578 CACTGGCCCTTGCTGCTT 60.600 61.111 0.00 0.00 37.74 3.91
1217 1530 3.673599 GGCAGTTTCCTCAGCCAC 58.326 61.111 0.00 0.00 46.26 5.01
1221 1534 1.546476 ACGAGTAGGCAGTTTCCTCAG 59.454 52.381 0.00 0.00 37.66 3.35
1222 1535 1.629043 ACGAGTAGGCAGTTTCCTCA 58.371 50.000 0.00 0.00 37.66 3.86
1228 1541 0.445436 CGTCGTACGAGTAGGCAGTT 59.555 55.000 20.18 0.00 46.05 3.16
1229 1542 0.390340 TCGTCGTACGAGTAGGCAGT 60.390 55.000 20.18 0.00 46.73 4.40
1540 1853 3.697747 TGTACCTTGGGTCCGCGG 61.698 66.667 22.12 22.12 37.09 6.46
1557 1870 1.202952 TGGGCGAGGGTAAATGTTTGT 60.203 47.619 0.00 0.00 0.00 2.83
1558 1871 1.540267 TGGGCGAGGGTAAATGTTTG 58.460 50.000 0.00 0.00 0.00 2.93
1559 1872 2.099405 CATGGGCGAGGGTAAATGTTT 58.901 47.619 0.00 0.00 0.00 2.83
1560 1873 1.762708 CATGGGCGAGGGTAAATGTT 58.237 50.000 0.00 0.00 0.00 2.71
1561 1874 0.751643 GCATGGGCGAGGGTAAATGT 60.752 55.000 0.00 0.00 0.00 2.71
1592 1906 0.718343 CAGCTACTTGAAGAGCGCAC 59.282 55.000 11.47 2.25 43.72 5.34
1593 1907 1.016130 GCAGCTACTTGAAGAGCGCA 61.016 55.000 11.47 0.00 43.72 6.09
1597 1911 2.159234 GCAGTTGCAGCTACTTGAAGAG 59.841 50.000 6.78 0.00 41.59 2.85
1602 1916 2.238353 ACGCAGTTGCAGCTACTTG 58.762 52.632 6.78 5.70 37.78 3.16
1603 1917 4.779475 ACGCAGTTGCAGCTACTT 57.221 50.000 6.78 0.00 37.78 2.24
1617 1931 3.163594 CAACGAAGATCAATCCAAACGC 58.836 45.455 0.00 0.00 0.00 4.84
1618 1932 3.163594 GCAACGAAGATCAATCCAAACG 58.836 45.455 0.00 0.00 0.00 3.60
1619 1933 3.057596 TGGCAACGAAGATCAATCCAAAC 60.058 43.478 0.00 0.00 42.51 2.93
1620 1934 3.153130 TGGCAACGAAGATCAATCCAAA 58.847 40.909 0.00 0.00 42.51 3.28
1624 1938 5.008019 ACATACATGGCAACGAAGATCAATC 59.992 40.000 0.00 0.00 42.51 2.67
1625 1939 4.883585 ACATACATGGCAACGAAGATCAAT 59.116 37.500 0.00 0.00 42.51 2.57
1629 1943 2.355756 GCACATACATGGCAACGAAGAT 59.644 45.455 0.00 0.00 42.51 2.40
1630 1944 1.737236 GCACATACATGGCAACGAAGA 59.263 47.619 0.00 0.00 42.51 2.87
1631 1945 1.468127 TGCACATACATGGCAACGAAG 59.532 47.619 0.00 0.00 42.51 3.79
1632 1946 1.528129 TGCACATACATGGCAACGAA 58.472 45.000 0.00 0.00 42.51 3.85
1633 1947 1.748950 ATGCACATACATGGCAACGA 58.251 45.000 0.00 0.00 37.46 3.85
1634 1948 2.186891 CAATGCACATACATGGCAACG 58.813 47.619 0.00 0.00 37.46 4.10
1635 1949 3.119388 AGACAATGCACATACATGGCAAC 60.119 43.478 0.00 3.68 37.46 4.17
1636 1950 3.090790 AGACAATGCACATACATGGCAA 58.909 40.909 0.00 0.00 37.46 4.52
1637 1951 2.424246 CAGACAATGCACATACATGGCA 59.576 45.455 0.00 0.00 37.99 4.92
1638 1952 2.424601 ACAGACAATGCACATACATGGC 59.575 45.455 0.00 0.00 0.00 4.40
1639 1953 3.242511 CGACAGACAATGCACATACATGG 60.243 47.826 0.00 0.00 0.00 3.66
1640 1954 3.786489 GCGACAGACAATGCACATACATG 60.786 47.826 0.00 0.00 0.00 3.21
1641 1955 2.352651 GCGACAGACAATGCACATACAT 59.647 45.455 0.00 0.00 0.00 2.29
1642 1956 1.731709 GCGACAGACAATGCACATACA 59.268 47.619 0.00 0.00 0.00 2.29
1643 1957 1.731709 TGCGACAGACAATGCACATAC 59.268 47.619 0.00 0.00 31.31 2.39
1644 1958 2.001872 CTGCGACAGACAATGCACATA 58.998 47.619 0.00 0.00 32.44 2.29
1645 1959 0.800631 CTGCGACAGACAATGCACAT 59.199 50.000 0.00 0.00 32.44 3.21
1646 1960 0.532640 ACTGCGACAGACAATGCACA 60.533 50.000 12.77 0.00 35.18 4.57
1647 1961 0.164647 GACTGCGACAGACAATGCAC 59.835 55.000 12.77 0.00 35.18 4.57
1648 1962 1.284297 CGACTGCGACAGACAATGCA 61.284 55.000 12.77 0.00 40.82 3.96
1649 1963 1.417592 CGACTGCGACAGACAATGC 59.582 57.895 12.77 0.00 40.82 3.56
1650 1964 1.417592 GCGACTGCGACAGACAATG 59.582 57.895 12.77 0.00 40.82 2.82
1651 1965 3.862124 GCGACTGCGACAGACAAT 58.138 55.556 12.77 0.00 40.82 2.71
1679 1993 3.039202 CTTGAACCGGATGCCGCAC 62.039 63.158 9.46 0.00 46.86 5.34
1689 2003 0.737715 CGCTCCTCCTTCTTGAACCG 60.738 60.000 0.00 0.00 0.00 4.44
1907 2224 5.568392 ACTAGCTAGTTGTACTGGTACACT 58.432 41.667 20.95 13.93 44.81 3.55
1961 2278 2.469516 CGCGTTCCATGCCCTAACC 61.470 63.158 0.00 0.00 0.00 2.85
2125 2444 7.717568 ACAAGGCATGTACTAGTACTTCATAG 58.282 38.462 28.56 17.05 41.63 2.23
2126 2445 7.655521 ACAAGGCATGTACTAGTACTTCATA 57.344 36.000 28.56 12.50 41.63 2.15
2128 2447 5.995565 ACAAGGCATGTACTAGTACTTCA 57.004 39.130 28.56 13.23 41.63 3.02
2129 2448 6.872020 TGAAACAAGGCATGTACTAGTACTTC 59.128 38.462 28.56 20.65 42.99 3.01
2130 2449 6.765403 TGAAACAAGGCATGTACTAGTACTT 58.235 36.000 28.56 21.53 42.99 2.24
2131 2450 6.014499 ACTGAAACAAGGCATGTACTAGTACT 60.014 38.462 28.56 14.70 42.99 2.73
2132 2451 6.164176 ACTGAAACAAGGCATGTACTAGTAC 58.836 40.000 23.58 23.58 42.99 2.73
2133 2452 6.354794 ACTGAAACAAGGCATGTACTAGTA 57.645 37.500 0.00 0.00 42.99 1.82
2145 2464 1.402787 AGGGTGCAACTGAAACAAGG 58.597 50.000 0.00 0.00 36.74 3.61
2221 2556 6.901265 TTTATATATAAAACGGGGCGAAAGC 58.099 36.000 14.26 0.00 41.85 3.51
2222 2557 7.019418 GCTTTATATATAAAACGGGGCGAAAG 58.981 38.462 16.69 5.83 32.39 2.62
2223 2558 6.485984 TGCTTTATATATAAAACGGGGCGAAA 59.514 34.615 16.69 1.77 32.39 3.46
2224 2559 5.996513 TGCTTTATATATAAAACGGGGCGAA 59.003 36.000 16.69 2.32 32.39 4.70
2225 2560 5.409214 GTGCTTTATATATAAAACGGGGCGA 59.591 40.000 16.69 6.81 32.39 5.54
2226 2561 5.391203 GGTGCTTTATATATAAAACGGGGCG 60.391 44.000 16.69 6.67 32.39 6.13
2227 2562 5.391203 CGGTGCTTTATATATAAAACGGGGC 60.391 44.000 16.69 15.63 32.39 5.80
2228 2563 5.933463 TCGGTGCTTTATATATAAAACGGGG 59.067 40.000 16.69 7.83 32.39 5.73
2229 2564 7.332430 TGATCGGTGCTTTATATATAAAACGGG 59.668 37.037 16.69 8.13 32.39 5.28
2230 2565 8.246908 TGATCGGTGCTTTATATATAAAACGG 57.753 34.615 16.69 15.78 32.39 4.44
2240 2575 8.279800 CGAATGTTTAATGATCGGTGCTTTATA 58.720 33.333 0.00 0.00 0.00 0.98
2241 2576 7.132213 CGAATGTTTAATGATCGGTGCTTTAT 58.868 34.615 0.00 0.00 0.00 1.40
2242 2577 6.457663 CCGAATGTTTAATGATCGGTGCTTTA 60.458 38.462 4.45 0.00 45.96 1.85
2243 2578 5.331902 CGAATGTTTAATGATCGGTGCTTT 58.668 37.500 0.00 0.00 0.00 3.51
2244 2579 4.201910 CCGAATGTTTAATGATCGGTGCTT 60.202 41.667 4.45 0.00 45.96 3.91
2245 2580 3.312421 CCGAATGTTTAATGATCGGTGCT 59.688 43.478 4.45 0.00 45.96 4.40
2246 2581 3.617669 CCGAATGTTTAATGATCGGTGC 58.382 45.455 4.45 0.00 45.96 5.01
2250 2585 7.215568 GTGTTTGTACCGAATGTTTAATGATCG 59.784 37.037 0.00 0.00 0.00 3.69
2251 2586 8.018520 TGTGTTTGTACCGAATGTTTAATGATC 58.981 33.333 0.00 0.00 0.00 2.92
2252 2587 7.806014 GTGTGTTTGTACCGAATGTTTAATGAT 59.194 33.333 0.00 0.00 0.00 2.45
2253 2588 7.133513 GTGTGTTTGTACCGAATGTTTAATGA 58.866 34.615 0.00 0.00 0.00 2.57
2254 2589 6.085718 CGTGTGTTTGTACCGAATGTTTAATG 59.914 38.462 0.00 0.00 0.00 1.90
2255 2590 6.018098 TCGTGTGTTTGTACCGAATGTTTAAT 60.018 34.615 0.00 0.00 0.00 1.40
2256 2591 5.292834 TCGTGTGTTTGTACCGAATGTTTAA 59.707 36.000 0.00 0.00 0.00 1.52
2257 2592 4.807834 TCGTGTGTTTGTACCGAATGTTTA 59.192 37.500 0.00 0.00 0.00 2.01
2258 2593 3.622163 TCGTGTGTTTGTACCGAATGTTT 59.378 39.130 0.00 0.00 0.00 2.83
2259 2594 3.001533 GTCGTGTGTTTGTACCGAATGTT 59.998 43.478 0.00 0.00 0.00 2.71
2260 2595 2.540931 GTCGTGTGTTTGTACCGAATGT 59.459 45.455 0.00 0.00 0.00 2.71
2261 2596 2.540516 TGTCGTGTGTTTGTACCGAATG 59.459 45.455 0.00 0.00 0.00 2.67
2262 2597 2.540931 GTGTCGTGTGTTTGTACCGAAT 59.459 45.455 0.00 0.00 0.00 3.34
2263 2598 1.925847 GTGTCGTGTGTTTGTACCGAA 59.074 47.619 0.00 0.00 0.00 4.30
2264 2599 1.558741 GTGTCGTGTGTTTGTACCGA 58.441 50.000 0.00 0.00 0.00 4.69
2265 2600 0.578211 GGTGTCGTGTGTTTGTACCG 59.422 55.000 0.00 0.00 0.00 4.02
2266 2601 0.578211 CGGTGTCGTGTGTTTGTACC 59.422 55.000 0.00 0.00 0.00 3.34
2267 2602 0.042794 GCGGTGTCGTGTGTTTGTAC 60.043 55.000 0.00 0.00 38.89 2.90
2268 2603 0.459759 TGCGGTGTCGTGTGTTTGTA 60.460 50.000 0.00 0.00 38.89 2.41
2269 2604 1.092921 ATGCGGTGTCGTGTGTTTGT 61.093 50.000 0.00 0.00 38.89 2.83
2270 2605 0.028770 AATGCGGTGTCGTGTGTTTG 59.971 50.000 0.00 0.00 38.89 2.93
2271 2606 0.306533 GAATGCGGTGTCGTGTGTTT 59.693 50.000 0.00 0.00 38.89 2.83
2272 2607 0.812014 TGAATGCGGTGTCGTGTGTT 60.812 50.000 0.00 0.00 38.89 3.32
2273 2608 0.602638 ATGAATGCGGTGTCGTGTGT 60.603 50.000 0.00 0.00 38.89 3.72
2274 2609 1.355005 TATGAATGCGGTGTCGTGTG 58.645 50.000 0.00 0.00 38.89 3.82
2275 2610 1.999735 CTTATGAATGCGGTGTCGTGT 59.000 47.619 0.00 0.00 38.89 4.49
2276 2611 1.999735 ACTTATGAATGCGGTGTCGTG 59.000 47.619 0.00 0.00 38.89 4.35
2277 2612 2.380084 ACTTATGAATGCGGTGTCGT 57.620 45.000 0.00 0.00 38.89 4.34
2278 2613 3.740044 AAACTTATGAATGCGGTGTCG 57.260 42.857 0.00 0.00 39.81 4.35
2279 2614 6.608610 ACTTAAAACTTATGAATGCGGTGTC 58.391 36.000 0.00 0.00 0.00 3.67
2280 2615 6.349033 GGACTTAAAACTTATGAATGCGGTGT 60.349 38.462 0.00 0.00 0.00 4.16
2281 2616 6.027749 GGACTTAAAACTTATGAATGCGGTG 58.972 40.000 0.00 0.00 0.00 4.94
2282 2617 5.163794 CGGACTTAAAACTTATGAATGCGGT 60.164 40.000 0.00 0.00 0.00 5.68
2283 2618 5.064198 TCGGACTTAAAACTTATGAATGCGG 59.936 40.000 0.00 0.00 0.00 5.69
2284 2619 6.102006 TCGGACTTAAAACTTATGAATGCG 57.898 37.500 0.00 0.00 0.00 4.73
2285 2620 6.469275 GCTTCGGACTTAAAACTTATGAATGC 59.531 38.462 0.00 0.00 0.00 3.56
2286 2621 7.693951 CAGCTTCGGACTTAAAACTTATGAATG 59.306 37.037 0.00 0.00 0.00 2.67
2287 2622 7.606456 TCAGCTTCGGACTTAAAACTTATGAAT 59.394 33.333 0.00 0.00 0.00 2.57
2288 2623 6.932400 TCAGCTTCGGACTTAAAACTTATGAA 59.068 34.615 0.00 0.00 0.00 2.57
2289 2624 6.367969 GTCAGCTTCGGACTTAAAACTTATGA 59.632 38.462 0.00 0.00 32.54 2.15
2292 2627 5.603596 TGTCAGCTTCGGACTTAAAACTTA 58.396 37.500 4.51 0.00 36.26 2.24
2351 2686 1.379527 AAATTTCCCCGCGAGATCAC 58.620 50.000 8.23 0.00 0.00 3.06
2358 2693 0.389296 GGACCAAAAATTTCCCCGCG 60.389 55.000 0.00 0.00 0.00 6.46
2360 2695 1.068125 GTCGGACCAAAAATTTCCCCG 60.068 52.381 0.00 0.00 37.08 5.73
2443 2784 1.495878 CATCGGAATTCCTCGAGCAG 58.504 55.000 22.05 5.00 38.83 4.24
2466 2807 3.733960 CGACACCGACTCGAGCCA 61.734 66.667 13.61 0.00 38.22 4.75
2470 2811 2.046988 TAGCCGACACCGACTCGA 60.047 61.111 0.00 0.00 38.22 4.04
2514 2855 2.346803 GCCAACGATGATGTACACTGT 58.653 47.619 0.00 0.00 0.00 3.55
2517 2858 0.026285 GCGCCAACGATGATGTACAC 59.974 55.000 0.00 0.00 43.93 2.90
2537 2916 1.703438 TAAGGCGTCGTCGAGAGAGC 61.703 60.000 6.17 0.00 43.49 4.09
2544 2923 3.749936 CCTAGATAAGGCGTCGTCG 57.250 57.895 0.00 0.00 38.97 5.12
2613 2993 1.445582 CACGGAGCAACGTACCCTC 60.446 63.158 5.38 0.00 46.75 4.30
2614 2994 1.751349 AACACGGAGCAACGTACCCT 61.751 55.000 5.38 0.00 46.75 4.34
2628 3008 0.944311 CAAGACCCGAGGACAACACG 60.944 60.000 0.00 0.00 0.00 4.49
2668 3049 0.604578 ACCAGCATCACAACCAATGC 59.395 50.000 0.00 0.00 46.84 3.56
2670 3051 1.619827 CCAACCAGCATCACAACCAAT 59.380 47.619 0.00 0.00 0.00 3.16
2681 3062 1.102809 CACAGAGCAACCAACCAGCA 61.103 55.000 0.00 0.00 0.00 4.41
2714 3096 2.648059 AGACTAACCTCATGCCAATGC 58.352 47.619 0.00 0.00 33.47 3.56
2730 3112 4.096382 CACAAAACAAGCAACACCTAGACT 59.904 41.667 0.00 0.00 0.00 3.24
2748 3130 1.608109 CACAGCACAGCATACCACAAA 59.392 47.619 0.00 0.00 0.00 2.83
2759 3141 0.886043 TTAGCAGCCACACAGCACAG 60.886 55.000 0.00 0.00 32.10 3.66
2764 3147 2.169352 ACTAGGATTAGCAGCCACACAG 59.831 50.000 0.00 0.00 0.00 3.66
2793 3176 1.535462 CCAACGCCTTCAGGTTACAAG 59.465 52.381 0.00 0.00 37.57 3.16
2801 3184 0.745845 CCTGGATCCAACGCCTTCAG 60.746 60.000 17.00 0.03 0.00 3.02
2802 3185 1.299648 CCTGGATCCAACGCCTTCA 59.700 57.895 17.00 0.00 0.00 3.02
2803 3186 0.322546 AACCTGGATCCAACGCCTTC 60.323 55.000 17.00 0.00 0.00 3.46
2818 3204 9.886132 TTAGAGAAGAAGCGATAAAATAAACCT 57.114 29.630 0.00 0.00 0.00 3.50
2823 3209 8.887036 TGCATTAGAGAAGAAGCGATAAAATA 57.113 30.769 0.00 0.00 0.00 1.40
2824 3210 7.792374 TGCATTAGAGAAGAAGCGATAAAAT 57.208 32.000 0.00 0.00 0.00 1.82
2825 3211 7.609760 TTGCATTAGAGAAGAAGCGATAAAA 57.390 32.000 0.00 0.00 0.00 1.52
2829 3215 5.363101 TCATTGCATTAGAGAAGAAGCGAT 58.637 37.500 0.00 0.00 0.00 4.58
2830 3216 4.758688 TCATTGCATTAGAGAAGAAGCGA 58.241 39.130 0.00 0.00 0.00 4.93
2897 3283 5.873146 AAAACCCATTTACCCTCGAAAAA 57.127 34.783 0.00 0.00 0.00 1.94
2898 3284 7.541916 AATAAAACCCATTTACCCTCGAAAA 57.458 32.000 0.00 0.00 36.35 2.29
2899 3285 7.232941 TGAAATAAAACCCATTTACCCTCGAAA 59.767 33.333 0.00 0.00 36.35 3.46
2900 3286 6.720288 TGAAATAAAACCCATTTACCCTCGAA 59.280 34.615 0.00 0.00 36.35 3.71
2901 3287 6.246919 TGAAATAAAACCCATTTACCCTCGA 58.753 36.000 0.00 0.00 36.35 4.04
2902 3288 6.518208 TGAAATAAAACCCATTTACCCTCG 57.482 37.500 0.00 0.00 36.35 4.63
2903 3289 9.811995 GTTATGAAATAAAACCCATTTACCCTC 57.188 33.333 0.00 0.00 41.12 4.30
2904 3290 8.764558 GGTTATGAAATAAAACCCATTTACCCT 58.235 33.333 0.00 0.00 41.12 4.34
2905 3291 7.707464 CGGTTATGAAATAAAACCCATTTACCC 59.293 37.037 0.00 0.00 41.12 3.69
2906 3292 8.252417 ACGGTTATGAAATAAAACCCATTTACC 58.748 33.333 0.00 0.00 41.12 2.85
2909 3295 8.471609 CCTACGGTTATGAAATAAAACCCATTT 58.528 33.333 0.00 0.00 41.12 2.32
2910 3296 7.835181 TCCTACGGTTATGAAATAAAACCCATT 59.165 33.333 0.00 0.00 41.12 3.16
2911 3297 7.348033 TCCTACGGTTATGAAATAAAACCCAT 58.652 34.615 0.00 0.00 41.12 4.00
2912 3298 6.719301 TCCTACGGTTATGAAATAAAACCCA 58.281 36.000 0.00 0.00 41.12 4.51
2913 3299 7.812690 ATCCTACGGTTATGAAATAAAACCC 57.187 36.000 0.00 0.00 41.12 4.11
2920 3306 9.621629 TTGATTGTAATCCTACGGTTATGAAAT 57.378 29.630 2.41 0.00 34.50 2.17
2921 3307 9.104965 CTTGATTGTAATCCTACGGTTATGAAA 57.895 33.333 2.41 0.00 34.50 2.69
2922 3308 8.262227 ACTTGATTGTAATCCTACGGTTATGAA 58.738 33.333 2.41 0.00 34.50 2.57
2923 3309 7.709182 CACTTGATTGTAATCCTACGGTTATGA 59.291 37.037 2.41 0.00 34.50 2.15
2924 3310 7.494625 ACACTTGATTGTAATCCTACGGTTATG 59.505 37.037 2.41 0.00 34.50 1.90
2925 3311 7.494625 CACACTTGATTGTAATCCTACGGTTAT 59.505 37.037 2.41 0.00 34.50 1.89
2926 3312 6.814644 CACACTTGATTGTAATCCTACGGTTA 59.185 38.462 2.41 0.00 34.50 2.85
2927 3313 5.642063 CACACTTGATTGTAATCCTACGGTT 59.358 40.000 2.41 0.00 34.50 4.44
2928 3314 5.175859 CACACTTGATTGTAATCCTACGGT 58.824 41.667 2.41 0.00 34.50 4.83
2929 3315 4.570772 CCACACTTGATTGTAATCCTACGG 59.429 45.833 2.41 0.00 34.50 4.02
2930 3316 4.570772 CCCACACTTGATTGTAATCCTACG 59.429 45.833 2.41 0.00 34.50 3.51
2931 3317 5.741011 TCCCACACTTGATTGTAATCCTAC 58.259 41.667 2.41 0.00 34.50 3.18
2932 3318 6.012858 ACTTCCCACACTTGATTGTAATCCTA 60.013 38.462 2.41 0.00 34.50 2.94
2933 3319 4.927267 TCCCACACTTGATTGTAATCCT 57.073 40.909 2.41 0.00 34.50 3.24
2934 3320 5.010282 ACTTCCCACACTTGATTGTAATCC 58.990 41.667 2.41 0.00 34.50 3.01
2935 3321 5.619981 GCACTTCCCACACTTGATTGTAATC 60.620 44.000 0.00 0.00 35.97 1.75
2936 3322 4.218417 GCACTTCCCACACTTGATTGTAAT 59.782 41.667 0.00 0.00 0.00 1.89
2937 3323 3.568007 GCACTTCCCACACTTGATTGTAA 59.432 43.478 0.00 0.00 0.00 2.41
2938 3324 3.146066 GCACTTCCCACACTTGATTGTA 58.854 45.455 0.00 0.00 0.00 2.41
2939 3325 1.956477 GCACTTCCCACACTTGATTGT 59.044 47.619 0.00 0.00 0.00 2.71
2940 3326 1.270550 GGCACTTCCCACACTTGATTG 59.729 52.381 0.00 0.00 0.00 2.67
2941 3327 1.145738 AGGCACTTCCCACACTTGATT 59.854 47.619 0.00 0.00 27.25 2.57
2942 3328 0.773644 AGGCACTTCCCACACTTGAT 59.226 50.000 0.00 0.00 27.25 2.57
2943 3329 2.230664 AGGCACTTCCCACACTTGA 58.769 52.632 0.00 0.00 27.25 3.02
2944 3330 4.907457 AGGCACTTCCCACACTTG 57.093 55.556 0.00 0.00 27.25 3.16
2956 3342 4.718961 AGAACCACCATATATCAAGGCAC 58.281 43.478 0.00 0.00 0.00 5.01
2957 3343 4.660303 AGAGAACCACCATATATCAAGGCA 59.340 41.667 0.00 0.00 0.00 4.75
2958 3344 4.999950 CAGAGAACCACCATATATCAAGGC 59.000 45.833 0.00 0.00 0.00 4.35
2959 3345 5.994054 CACAGAGAACCACCATATATCAAGG 59.006 44.000 0.00 0.00 0.00 3.61
2960 3346 6.586344 ACACAGAGAACCACCATATATCAAG 58.414 40.000 0.00 0.00 0.00 3.02
2961 3347 6.560003 ACACAGAGAACCACCATATATCAA 57.440 37.500 0.00 0.00 0.00 2.57
2962 3348 6.239317 GCTACACAGAGAACCACCATATATCA 60.239 42.308 0.00 0.00 0.00 2.15
2963 3349 6.159988 GCTACACAGAGAACCACCATATATC 58.840 44.000 0.00 0.00 0.00 1.63
2964 3350 5.012148 GGCTACACAGAGAACCACCATATAT 59.988 44.000 0.00 0.00 0.00 0.86
2965 3351 4.344102 GGCTACACAGAGAACCACCATATA 59.656 45.833 0.00 0.00 0.00 0.86
2966 3352 3.134804 GGCTACACAGAGAACCACCATAT 59.865 47.826 0.00 0.00 0.00 1.78
2967 3353 2.500098 GGCTACACAGAGAACCACCATA 59.500 50.000 0.00 0.00 0.00 2.74
2968 3354 1.279271 GGCTACACAGAGAACCACCAT 59.721 52.381 0.00 0.00 0.00 3.55
2969 3355 0.685097 GGCTACACAGAGAACCACCA 59.315 55.000 0.00 0.00 0.00 4.17
2970 3356 0.685097 TGGCTACACAGAGAACCACC 59.315 55.000 0.00 0.00 0.00 4.61
2971 3357 2.770164 ATGGCTACACAGAGAACCAC 57.230 50.000 0.00 0.00 0.00 4.16
2972 3358 3.068165 CGATATGGCTACACAGAGAACCA 59.932 47.826 0.00 0.00 0.00 3.67
2973 3359 3.643763 CGATATGGCTACACAGAGAACC 58.356 50.000 0.00 0.00 0.00 3.62
2974 3360 3.053455 GCGATATGGCTACACAGAGAAC 58.947 50.000 1.96 0.00 0.00 3.01
2975 3361 2.693074 TGCGATATGGCTACACAGAGAA 59.307 45.455 11.22 0.00 0.00 2.87
2976 3362 2.034685 GTGCGATATGGCTACACAGAGA 59.965 50.000 11.22 0.00 0.00 3.10
2977 3363 2.035193 AGTGCGATATGGCTACACAGAG 59.965 50.000 11.22 0.00 33.69 3.35
2978 3364 2.031870 AGTGCGATATGGCTACACAGA 58.968 47.619 11.22 0.00 33.69 3.41
2979 3365 2.515926 AGTGCGATATGGCTACACAG 57.484 50.000 11.22 0.00 33.69 3.66
2980 3366 2.287368 CGTAGTGCGATATGGCTACACA 60.287 50.000 11.22 0.00 44.77 3.72
2981 3367 2.031420 TCGTAGTGCGATATGGCTACAC 60.031 50.000 11.22 1.15 45.68 2.90
2982 3368 2.223745 TCGTAGTGCGATATGGCTACA 58.776 47.619 11.22 0.00 45.68 2.74
2983 3369 2.983402 TCGTAGTGCGATATGGCTAC 57.017 50.000 11.22 7.55 45.68 3.58
2993 3379 3.240631 CAGTGATGTACAATCGTAGTGCG 59.759 47.826 0.00 0.00 43.01 5.34
2994 3380 3.551890 CCAGTGATGTACAATCGTAGTGC 59.448 47.826 0.00 0.00 0.00 4.40
2995 3381 4.744570 ACCAGTGATGTACAATCGTAGTG 58.255 43.478 0.00 0.00 0.00 2.74
2996 3382 4.461431 TGACCAGTGATGTACAATCGTAGT 59.539 41.667 0.00 0.00 0.00 2.73
2997 3383 4.993905 TGACCAGTGATGTACAATCGTAG 58.006 43.478 0.00 0.00 0.00 3.51
2998 3384 5.394224 TTGACCAGTGATGTACAATCGTA 57.606 39.130 0.00 0.00 0.00 3.43
2999 3385 3.953712 TGACCAGTGATGTACAATCGT 57.046 42.857 0.00 0.00 0.00 3.73
3000 3386 5.801350 AATTGACCAGTGATGTACAATCG 57.199 39.130 0.00 0.00 0.00 3.34
3001 3387 5.801947 GCAAATTGACCAGTGATGTACAATC 59.198 40.000 0.00 0.00 0.00 2.67
3002 3388 5.477984 AGCAAATTGACCAGTGATGTACAAT 59.522 36.000 0.00 0.00 0.00 2.71
3003 3389 4.826733 AGCAAATTGACCAGTGATGTACAA 59.173 37.500 0.00 0.00 0.00 2.41
3004 3390 4.397420 AGCAAATTGACCAGTGATGTACA 58.603 39.130 0.00 0.00 0.00 2.90
3005 3391 6.540189 AGATAGCAAATTGACCAGTGATGTAC 59.460 38.462 0.00 0.00 0.00 2.90
3006 3392 6.653020 AGATAGCAAATTGACCAGTGATGTA 58.347 36.000 0.00 0.00 0.00 2.29
3007 3393 5.503927 AGATAGCAAATTGACCAGTGATGT 58.496 37.500 0.00 0.00 0.00 3.06
3008 3394 6.446781 AAGATAGCAAATTGACCAGTGATG 57.553 37.500 0.00 0.00 0.00 3.07
3009 3395 8.757982 AATAAGATAGCAAATTGACCAGTGAT 57.242 30.769 0.00 0.00 0.00 3.06
3010 3396 8.579850 AAATAAGATAGCAAATTGACCAGTGA 57.420 30.769 0.00 0.00 0.00 3.41
3011 3397 9.079833 CAAAATAAGATAGCAAATTGACCAGTG 57.920 33.333 0.00 0.00 0.00 3.66
3012 3398 8.806146 ACAAAATAAGATAGCAAATTGACCAGT 58.194 29.630 0.00 0.00 0.00 4.00
3013 3399 9.643693 AACAAAATAAGATAGCAAATTGACCAG 57.356 29.630 0.00 0.00 0.00 4.00
3014 3400 9.638239 GAACAAAATAAGATAGCAAATTGACCA 57.362 29.630 0.00 0.00 0.00 4.02
3015 3401 9.638239 TGAACAAAATAAGATAGCAAATTGACC 57.362 29.630 0.00 0.00 0.00 4.02
3032 3418 9.401058 CCTTAGGAGATAAGACATGAACAAAAT 57.599 33.333 0.00 0.00 43.17 1.82
3033 3419 8.602424 TCCTTAGGAGATAAGACATGAACAAAA 58.398 33.333 0.00 0.00 43.17 2.44
3034 3420 8.146053 TCCTTAGGAGATAAGACATGAACAAA 57.854 34.615 0.00 0.00 43.17 2.83
3035 3421 7.733773 TCCTTAGGAGATAAGACATGAACAA 57.266 36.000 0.00 0.00 43.17 2.83
3036 3422 7.733773 TTCCTTAGGAGATAAGACATGAACA 57.266 36.000 0.00 0.00 43.17 3.18
3042 3428 8.925338 GGAGTTTATTCCTTAGGAGATAAGACA 58.075 37.037 0.00 0.00 43.17 3.41
3043 3429 8.925338 TGGAGTTTATTCCTTAGGAGATAAGAC 58.075 37.037 0.00 9.37 43.17 3.01
3044 3430 9.676129 ATGGAGTTTATTCCTTAGGAGATAAGA 57.324 33.333 0.00 0.00 43.17 2.10
3048 3434 9.997172 AAAAATGGAGTTTATTCCTTAGGAGAT 57.003 29.630 0.00 1.48 38.12 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.