Multiple sequence alignment - TraesCS1D01G425600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G425600 chr1D 100.000 5228 0 0 1 5228 479232331 479227104 0.000000e+00 9655
1 TraesCS1D01G425600 chr1D 92.550 349 10 6 160 506 479318469 479318135 2.190000e-133 486
2 TraesCS1D01G425600 chr1A 94.595 1739 61 15 2549 4282 575596241 575594531 0.000000e+00 2660
3 TraesCS1D01G425600 chr1A 94.366 639 30 4 4595 5228 575594262 575593625 0.000000e+00 976
4 TraesCS1D01G425600 chr1A 87.615 654 51 14 1916 2553 575596975 575596336 0.000000e+00 732
5 TraesCS1D01G425600 chr1A 86.220 537 26 11 750 1258 575598022 575597506 5.960000e-149 538
6 TraesCS1D01G425600 chr1A 81.278 454 30 16 1325 1745 575597508 575597077 3.040000e-82 316
7 TraesCS1D01G425600 chr1A 85.135 222 9 9 4288 4508 575594467 575594269 6.860000e-49 206
8 TraesCS1D01G425600 chr1A 83.810 210 17 7 559 751 575598303 575598094 3.220000e-42 183
9 TraesCS1D01G425600 chr1A 82.234 197 17 8 255 437 575598814 575598622 2.520000e-33 154
10 TraesCS1D01G425600 chr1A 93.069 101 7 0 4505 4605 133417454 133417554 1.170000e-31 148
11 TraesCS1D01G425600 chr1B 88.889 2070 110 40 559 2558 667494834 667492815 0.000000e+00 2438
12 TraesCS1D01G425600 chr1B 94.573 866 37 6 2549 3411 667492741 667491883 0.000000e+00 1330
13 TraesCS1D01G425600 chr1B 91.837 833 50 9 3444 4276 667491892 667491078 0.000000e+00 1146
14 TraesCS1D01G425600 chr1B 85.736 652 59 16 211 838 667505369 667504728 0.000000e+00 658
15 TraesCS1D01G425600 chr1B 81.173 324 40 14 255 572 667495432 667495124 1.880000e-59 241
16 TraesCS1D01G425600 chr1B 85.795 176 10 6 537 711 667502231 667502070 6.960000e-39 172
17 TraesCS1D01G425600 chr1B 90.435 115 8 2 4510 4624 47517342 47517453 1.170000e-31 148
18 TraesCS1D01G425600 chr2B 77.049 488 72 25 4598 5053 186285930 186286409 1.450000e-60 244
19 TraesCS1D01G425600 chr2B 92.308 104 6 2 4499 4602 201234362 201234261 4.220000e-31 147
20 TraesCS1D01G425600 chr2B 92.308 104 6 2 4506 4608 440212053 440212155 4.220000e-31 147
21 TraesCS1D01G425600 chr2B 82.500 160 14 6 5078 5223 186286490 186286649 1.530000e-25 128
22 TraesCS1D01G425600 chr2A 76.008 496 66 29 4598 5053 138917294 138916812 1.910000e-49 207
23 TraesCS1D01G425600 chr2A 82.822 163 14 5 5078 5226 138916731 138916569 3.280000e-27 134
24 TraesCS1D01G425600 chr4D 96.774 93 2 1 4506 4598 508008780 508008871 2.520000e-33 154
25 TraesCS1D01G425600 chr6D 91.589 107 7 2 4496 4602 443958504 443958608 4.220000e-31 147
26 TraesCS1D01G425600 chrUn 90.179 112 8 2 4514 4624 335557649 335557758 5.460000e-30 143
27 TraesCS1D01G425600 chr4A 90.826 109 7 2 4517 4624 632934454 632934348 5.460000e-30 143
28 TraesCS1D01G425600 chr3B 90.179 112 8 2 4514 4624 752216473 752216582 5.460000e-30 143
29 TraesCS1D01G425600 chr2D 94.186 86 5 0 5078 5163 132065952 132065867 1.180000e-26 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G425600 chr1D 479227104 479232331 5227 True 9655.000 9655 100.000000 1 5228 1 chr1D.!!$R1 5227
1 TraesCS1D01G425600 chr1A 575593625 575598814 5189 True 720.625 2660 86.906625 255 5228 8 chr1A.!!$R1 4973
2 TraesCS1D01G425600 chr1B 667491078 667495432 4354 True 1288.750 2438 89.118000 255 4276 4 chr1B.!!$R1 4021
3 TraesCS1D01G425600 chr1B 667502070 667505369 3299 True 415.000 658 85.765500 211 838 2 chr1B.!!$R2 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 116 0.109781 CCAGCATTTTTGTCCGGACG 60.110 55.0 28.70 14.75 0.00 4.79 F
921 1373 0.246635 AGCCACATACACAGTCCGTC 59.753 55.0 0.00 0.00 0.00 4.79 F
929 1381 0.669077 ACACAGTCCGTCAGTCACTC 59.331 55.0 0.00 0.00 0.00 3.51 F
930 1382 0.955178 CACAGTCCGTCAGTCACTCT 59.045 55.0 0.00 0.00 0.00 3.24 F
1007 1465 1.146957 GCAGACGCAGAGATGAGCAG 61.147 60.0 0.00 0.00 38.36 4.24 F
2457 4109 1.570803 CCATCTCATTTTTGGGGCCA 58.429 50.0 4.39 0.00 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1209 1685 0.035056 CATTCCCACCACCTGGACTC 60.035 60.000 0.0 0.0 43.95 3.36 R
2760 4598 0.597568 CGAGCCATTGAAGCAAACCA 59.402 50.000 0.0 0.0 0.00 3.67 R
2829 4667 2.356135 CACCATTCTTTACCCTGACCG 58.644 52.381 0.0 0.0 0.00 4.79 R
3477 5319 5.245751 ACAGATTATCCCACTGCTCTCTATG 59.754 44.000 0.0 0.0 35.38 2.23 R
3753 5595 1.234821 TGAATTGTGTTGCGGTCTCC 58.765 50.000 0.0 0.0 0.00 3.71 R
5091 6995 0.107508 TGCCAAGCTGATAGGAGTGC 60.108 55.000 0.0 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 3.557824 GTCCACGCCGACGAATTT 58.442 55.556 0.00 0.00 43.93 1.82
42 43 1.131826 GTCCACGCCGACGAATTTG 59.868 57.895 0.00 0.00 43.93 2.32
43 44 2.030401 TCCACGCCGACGAATTTGG 61.030 57.895 0.00 0.00 43.93 3.28
44 45 2.478746 CACGCCGACGAATTTGGG 59.521 61.111 0.00 0.00 43.93 4.12
45 46 2.031465 ACGCCGACGAATTTGGGT 59.969 55.556 0.00 0.00 43.93 4.51
46 47 2.030958 ACGCCGACGAATTTGGGTC 61.031 57.895 0.00 0.00 43.93 4.46
54 55 3.498082 GACGAATTTGGGTCGAAAATGG 58.502 45.455 0.18 0.00 41.02 3.16
55 56 3.150767 ACGAATTTGGGTCGAAAATGGA 58.849 40.909 0.18 0.00 41.02 3.41
56 57 3.761752 ACGAATTTGGGTCGAAAATGGAT 59.238 39.130 0.18 0.00 41.02 3.41
57 58 4.142469 ACGAATTTGGGTCGAAAATGGATC 60.142 41.667 0.18 0.00 41.02 3.36
58 59 4.682787 GAATTTGGGTCGAAAATGGATCC 58.317 43.478 4.20 4.20 35.15 3.36
59 60 1.745232 TTGGGTCGAAAATGGATCCG 58.255 50.000 7.39 0.00 37.51 4.18
60 61 0.746563 TGGGTCGAAAATGGATCCGC 60.747 55.000 7.39 0.00 37.51 5.54
61 62 1.641677 GGTCGAAAATGGATCCGCG 59.358 57.895 7.39 0.00 0.00 6.46
62 63 1.011131 GTCGAAAATGGATCCGCGC 60.011 57.895 7.39 0.00 0.00 6.86
63 64 2.053116 CGAAAATGGATCCGCGCG 60.053 61.111 25.67 25.67 0.00 6.86
64 65 2.327940 GAAAATGGATCCGCGCGG 59.672 61.111 42.13 42.13 0.00 6.46
80 81 2.767566 GCGGATGCGTTTTGAAAATG 57.232 45.000 8.84 5.53 0.00 2.32
81 82 1.389784 GCGGATGCGTTTTGAAAATGG 59.610 47.619 8.84 0.37 0.00 3.16
82 83 2.671596 CGGATGCGTTTTGAAAATGGT 58.328 42.857 11.43 0.00 0.00 3.55
83 84 3.056304 CGGATGCGTTTTGAAAATGGTT 58.944 40.909 11.43 0.00 0.00 3.67
84 85 3.121113 CGGATGCGTTTTGAAAATGGTTC 59.879 43.478 11.43 0.00 0.00 3.62
85 86 3.121113 GGATGCGTTTTGAAAATGGTTCG 59.879 43.478 11.43 3.05 0.00 3.95
86 87 2.464865 TGCGTTTTGAAAATGGTTCGG 58.535 42.857 11.43 0.00 0.00 4.30
87 88 2.159226 TGCGTTTTGAAAATGGTTCGGT 60.159 40.909 11.43 0.00 0.00 4.69
88 89 2.217620 GCGTTTTGAAAATGGTTCGGTG 59.782 45.455 11.43 0.00 0.00 4.94
89 90 3.696898 CGTTTTGAAAATGGTTCGGTGA 58.303 40.909 1.98 0.00 0.00 4.02
90 91 3.728718 CGTTTTGAAAATGGTTCGGTGAG 59.271 43.478 1.98 0.00 0.00 3.51
91 92 4.678622 GTTTTGAAAATGGTTCGGTGAGT 58.321 39.130 0.00 0.00 0.00 3.41
92 93 4.993029 TTTGAAAATGGTTCGGTGAGTT 57.007 36.364 0.00 0.00 0.00 3.01
93 94 3.980646 TGAAAATGGTTCGGTGAGTTG 57.019 42.857 0.00 0.00 0.00 3.16
94 95 2.621055 TGAAAATGGTTCGGTGAGTTGG 59.379 45.455 0.00 0.00 0.00 3.77
95 96 1.616159 AAATGGTTCGGTGAGTTGGG 58.384 50.000 0.00 0.00 0.00 4.12
96 97 0.893727 AATGGTTCGGTGAGTTGGGC 60.894 55.000 0.00 0.00 0.00 5.36
97 98 2.671963 GGTTCGGTGAGTTGGGCC 60.672 66.667 0.00 0.00 0.00 5.80
98 99 2.112297 GTTCGGTGAGTTGGGCCA 59.888 61.111 0.00 0.00 0.00 5.36
99 100 1.966451 GTTCGGTGAGTTGGGCCAG 60.966 63.158 6.23 0.00 0.00 4.85
100 101 3.842925 TTCGGTGAGTTGGGCCAGC 62.843 63.158 13.09 13.09 0.00 4.85
101 102 4.641645 CGGTGAGTTGGGCCAGCA 62.642 66.667 22.93 12.08 0.00 4.41
102 103 2.036256 GGTGAGTTGGGCCAGCAT 59.964 61.111 22.93 7.57 0.00 3.79
103 104 1.607467 GGTGAGTTGGGCCAGCATT 60.607 57.895 22.93 1.99 0.00 3.56
104 105 1.187567 GGTGAGTTGGGCCAGCATTT 61.188 55.000 22.93 1.16 0.00 2.32
105 106 0.681175 GTGAGTTGGGCCAGCATTTT 59.319 50.000 22.93 0.74 0.00 1.82
106 107 1.070601 GTGAGTTGGGCCAGCATTTTT 59.929 47.619 22.93 0.31 0.00 1.94
107 108 1.070445 TGAGTTGGGCCAGCATTTTTG 59.930 47.619 22.93 0.00 0.00 2.44
108 109 1.070601 GAGTTGGGCCAGCATTTTTGT 59.929 47.619 22.93 0.00 0.00 2.83
109 110 1.070601 AGTTGGGCCAGCATTTTTGTC 59.929 47.619 22.93 0.00 0.00 3.18
110 111 0.396060 TTGGGCCAGCATTTTTGTCC 59.604 50.000 6.23 0.00 0.00 4.02
111 112 1.079888 GGGCCAGCATTTTTGTCCG 60.080 57.895 4.39 0.00 0.00 4.79
112 113 1.079888 GGCCAGCATTTTTGTCCGG 60.080 57.895 0.00 0.00 0.00 5.14
113 114 1.531739 GGCCAGCATTTTTGTCCGGA 61.532 55.000 0.00 0.00 0.00 5.14
114 115 0.388520 GCCAGCATTTTTGTCCGGAC 60.389 55.000 28.17 28.17 0.00 4.79
115 116 0.109781 CCAGCATTTTTGTCCGGACG 60.110 55.000 28.70 14.75 0.00 4.79
116 117 0.591170 CAGCATTTTTGTCCGGACGT 59.409 50.000 28.70 9.97 0.00 4.34
117 118 1.001815 CAGCATTTTTGTCCGGACGTT 60.002 47.619 28.70 9.19 0.00 3.99
118 119 1.001815 AGCATTTTTGTCCGGACGTTG 60.002 47.619 28.70 20.29 0.00 4.10
119 120 1.002251 GCATTTTTGTCCGGACGTTGA 60.002 47.619 28.70 15.55 0.00 3.18
120 121 2.646250 CATTTTTGTCCGGACGTTGAC 58.354 47.619 28.70 5.90 0.00 3.18
121 122 0.651551 TTTTTGTCCGGACGTTGACG 59.348 50.000 28.70 1.41 46.33 4.35
128 129 4.668118 GGACGTTGACGGGCGGAA 62.668 66.667 8.52 0.00 44.95 4.30
129 130 2.433664 GACGTTGACGGGCGGAAT 60.434 61.111 8.52 0.00 44.95 3.01
130 131 2.736682 GACGTTGACGGGCGGAATG 61.737 63.158 8.52 0.00 44.95 2.67
131 132 2.433491 CGTTGACGGGCGGAATGA 60.433 61.111 0.00 0.00 35.37 2.57
132 133 1.813753 CGTTGACGGGCGGAATGAT 60.814 57.895 0.00 0.00 35.37 2.45
133 134 1.366111 CGTTGACGGGCGGAATGATT 61.366 55.000 0.00 0.00 35.37 2.57
134 135 0.377203 GTTGACGGGCGGAATGATTC 59.623 55.000 0.00 0.00 0.00 2.52
135 136 1.087202 TTGACGGGCGGAATGATTCG 61.087 55.000 0.00 0.00 0.00 3.34
141 142 3.261951 CGGAATGATTCGCCGCGT 61.262 61.111 13.39 0.00 38.46 6.01
142 143 2.808958 CGGAATGATTCGCCGCGTT 61.809 57.895 13.39 1.34 38.46 4.84
143 144 1.297598 GGAATGATTCGCCGCGTTG 60.298 57.895 13.39 0.00 0.00 4.10
144 145 1.297598 GAATGATTCGCCGCGTTGG 60.298 57.895 13.39 0.00 42.50 3.77
145 146 1.701545 GAATGATTCGCCGCGTTGGA 61.702 55.000 13.39 0.00 42.00 3.53
146 147 1.705337 AATGATTCGCCGCGTTGGAG 61.705 55.000 13.39 0.00 42.00 3.86
147 148 2.813908 GATTCGCCGCGTTGGAGT 60.814 61.111 13.39 0.00 42.00 3.85
148 149 2.358247 ATTCGCCGCGTTGGAGTT 60.358 55.556 13.39 0.00 42.00 3.01
149 150 2.563086 GATTCGCCGCGTTGGAGTTG 62.563 60.000 13.39 0.00 42.00 3.16
152 153 3.660111 GCCGCGTTGGAGTTGCTT 61.660 61.111 4.92 0.00 42.00 3.91
153 154 3.030652 CCGCGTTGGAGTTGCTTT 58.969 55.556 4.92 0.00 42.00 3.51
154 155 1.358759 CCGCGTTGGAGTTGCTTTT 59.641 52.632 4.92 0.00 42.00 2.27
155 156 0.248866 CCGCGTTGGAGTTGCTTTTT 60.249 50.000 4.92 0.00 42.00 1.94
156 157 1.002251 CCGCGTTGGAGTTGCTTTTTA 60.002 47.619 4.92 0.00 42.00 1.52
157 158 2.351350 CCGCGTTGGAGTTGCTTTTTAT 60.351 45.455 4.92 0.00 42.00 1.40
158 159 3.120130 CCGCGTTGGAGTTGCTTTTTATA 60.120 43.478 4.92 0.00 42.00 0.98
159 160 4.468643 CGCGTTGGAGTTGCTTTTTATAA 58.531 39.130 0.00 0.00 0.00 0.98
160 161 4.912766 CGCGTTGGAGTTGCTTTTTATAAA 59.087 37.500 0.00 0.00 0.00 1.40
161 162 5.164225 CGCGTTGGAGTTGCTTTTTATAAAC 60.164 40.000 0.00 0.00 0.00 2.01
162 163 5.164225 GCGTTGGAGTTGCTTTTTATAAACG 60.164 40.000 0.00 0.00 39.55 3.60
163 164 5.910723 CGTTGGAGTTGCTTTTTATAAACGT 59.089 36.000 0.00 0.00 33.84 3.99
164 165 6.085849 CGTTGGAGTTGCTTTTTATAAACGTC 59.914 38.462 0.00 0.00 33.84 4.34
165 166 6.004408 TGGAGTTGCTTTTTATAAACGTCC 57.996 37.500 0.00 0.00 0.00 4.79
166 167 5.766174 TGGAGTTGCTTTTTATAAACGTCCT 59.234 36.000 0.00 0.00 0.00 3.85
167 168 6.084277 GGAGTTGCTTTTTATAAACGTCCTG 58.916 40.000 0.00 0.00 0.00 3.86
168 169 5.458015 AGTTGCTTTTTATAAACGTCCTGC 58.542 37.500 0.00 0.00 0.00 4.85
169 170 5.009210 AGTTGCTTTTTATAAACGTCCTGCA 59.991 36.000 0.00 0.58 0.00 4.41
170 171 5.637006 TGCTTTTTATAAACGTCCTGCAT 57.363 34.783 0.00 0.00 0.00 3.96
171 172 6.019779 TGCTTTTTATAAACGTCCTGCATT 57.980 33.333 0.00 0.00 0.00 3.56
172 173 6.451393 TGCTTTTTATAAACGTCCTGCATTT 58.549 32.000 0.00 0.00 0.00 2.32
173 174 7.594714 TGCTTTTTATAAACGTCCTGCATTTA 58.405 30.769 0.00 0.00 0.00 1.40
174 175 7.753132 TGCTTTTTATAAACGTCCTGCATTTAG 59.247 33.333 0.00 0.00 0.00 1.85
175 176 7.220108 GCTTTTTATAAACGTCCTGCATTTAGG 59.780 37.037 0.00 0.00 39.29 2.69
176 177 7.925043 TTTTATAAACGTCCTGCATTTAGGA 57.075 32.000 0.00 0.00 44.44 2.94
192 193 0.831307 AGGAATTCCTGCGTACCTCC 59.169 55.000 26.52 0.00 46.55 4.30
193 194 0.529992 GGAATTCCTGCGTACCTCCG 60.530 60.000 17.73 0.00 0.00 4.63
194 195 0.529992 GAATTCCTGCGTACCTCCGG 60.530 60.000 0.00 0.00 0.00 5.14
195 196 1.262640 AATTCCTGCGTACCTCCGGT 61.263 55.000 0.00 0.00 40.16 5.28
196 197 1.956629 ATTCCTGCGTACCTCCGGTG 61.957 60.000 0.00 0.00 36.19 4.94
197 198 4.814294 CCTGCGTACCTCCGGTGC 62.814 72.222 0.00 0.00 36.19 5.01
198 199 4.063967 CTGCGTACCTCCGGTGCA 62.064 66.667 0.00 2.77 38.20 4.57
199 200 3.583276 CTGCGTACCTCCGGTGCAA 62.583 63.158 0.00 0.00 38.20 4.08
200 201 3.116531 GCGTACCTCCGGTGCAAC 61.117 66.667 0.00 0.00 38.20 4.17
219 220 4.923281 GCAACCAAGCTATAAACCAAACAG 59.077 41.667 0.00 0.00 0.00 3.16
262 263 1.935873 CGAGGGATATGCATATTGCCG 59.064 52.381 20.00 15.96 44.23 5.69
283 284 3.462021 GTGATCATTGCTCAGGTAGGTC 58.538 50.000 0.00 0.00 0.00 3.85
354 360 3.250744 CACAGGAAGCATGCATGAAAAG 58.749 45.455 30.64 15.28 0.00 2.27
356 362 3.057033 ACAGGAAGCATGCATGAAAAGAC 60.057 43.478 30.64 11.13 0.00 3.01
359 365 2.649331 AGCATGCATGAAAAGACTGC 57.351 45.000 30.64 12.99 36.45 4.40
377 383 1.016130 GCCGATCCACACACAGTCAG 61.016 60.000 0.00 0.00 0.00 3.51
384 390 1.502231 CACACACAGTCAGGTGCTAC 58.498 55.000 0.00 0.00 42.55 3.58
410 425 4.261155 CGAACTTGTGGTCACATTGATTGT 60.261 41.667 4.53 0.00 41.52 2.71
414 429 4.764679 TGTGGTCACATTGATTGTAAGC 57.235 40.909 0.00 0.00 36.57 3.09
467 491 4.812091 AGAAAACCAACCGCAAATAAAACC 59.188 37.500 0.00 0.00 0.00 3.27
540 569 8.898761 TCTCATTTTGTCTTTGCACTAAACTAA 58.101 29.630 0.00 0.00 0.00 2.24
547 576 4.458989 TCTTTGCACTAAACTAATGCCAGG 59.541 41.667 0.00 0.00 38.63 4.45
628 986 4.463186 ACAGGTAGGCTACATTATCGATCC 59.537 45.833 24.96 4.80 0.00 3.36
645 1003 3.618594 CGATCCGACACATTTCTTCATGT 59.381 43.478 0.00 0.00 37.93 3.21
694 1059 6.192360 CGATTCTCACGAAAAGAACAAAAGT 58.808 36.000 0.00 0.00 35.68 2.66
696 1061 7.318205 CGATTCTCACGAAAAGAACAAAAGTAC 59.682 37.037 0.00 0.00 35.68 2.73
782 1225 1.916273 ATGCACGTGACCCAGGGTA 60.916 57.895 22.23 0.00 35.25 3.69
807 1257 1.549203 CACCAGAACCCCTTCCATTG 58.451 55.000 0.00 0.00 0.00 2.82
818 1268 3.309410 CCCCTTCCATTGTCTCCATTCTT 60.309 47.826 0.00 0.00 0.00 2.52
882 1334 3.662759 TGGCTATTTAAACCCCTCCAG 57.337 47.619 0.00 0.00 0.00 3.86
917 1369 3.403038 ACTCAAAGCCACATACACAGTC 58.597 45.455 0.00 0.00 0.00 3.51
918 1370 2.744202 CTCAAAGCCACATACACAGTCC 59.256 50.000 0.00 0.00 0.00 3.85
919 1371 1.464608 CAAAGCCACATACACAGTCCG 59.535 52.381 0.00 0.00 0.00 4.79
921 1373 0.246635 AGCCACATACACAGTCCGTC 59.753 55.000 0.00 0.00 0.00 4.79
923 1375 1.996292 CCACATACACAGTCCGTCAG 58.004 55.000 0.00 0.00 0.00 3.51
926 1378 2.030274 CACATACACAGTCCGTCAGTCA 60.030 50.000 0.00 0.00 0.00 3.41
927 1379 2.030185 ACATACACAGTCCGTCAGTCAC 60.030 50.000 0.00 0.00 0.00 3.67
928 1380 1.977056 TACACAGTCCGTCAGTCACT 58.023 50.000 0.00 0.00 0.00 3.41
929 1381 0.669077 ACACAGTCCGTCAGTCACTC 59.331 55.000 0.00 0.00 0.00 3.51
930 1382 0.955178 CACAGTCCGTCAGTCACTCT 59.045 55.000 0.00 0.00 0.00 3.24
931 1383 2.152016 CACAGTCCGTCAGTCACTCTA 58.848 52.381 0.00 0.00 0.00 2.43
932 1384 2.750166 CACAGTCCGTCAGTCACTCTAT 59.250 50.000 0.00 0.00 0.00 1.98
933 1385 3.011119 ACAGTCCGTCAGTCACTCTATC 58.989 50.000 0.00 0.00 0.00 2.08
934 1386 2.356382 CAGTCCGTCAGTCACTCTATCC 59.644 54.545 0.00 0.00 0.00 2.59
935 1387 1.677052 GTCCGTCAGTCACTCTATCCC 59.323 57.143 0.00 0.00 0.00 3.85
939 1391 1.410882 GTCAGTCACTCTATCCCCTGC 59.589 57.143 0.00 0.00 0.00 4.85
1007 1465 1.146957 GCAGACGCAGAGATGAGCAG 61.147 60.000 0.00 0.00 38.36 4.24
1037 1495 2.259818 CCTGCTGCTCGTCGTCTT 59.740 61.111 0.00 0.00 0.00 3.01
1241 1717 3.507924 GAATGGCCATGCGTCGCA 61.508 61.111 24.05 24.05 44.86 5.10
1248 1724 3.250323 CATGCGTCGCAGTCTCCG 61.250 66.667 25.78 5.69 43.65 4.63
1259 1735 4.778143 GTCTCCGCCACCGCCATT 62.778 66.667 0.00 0.00 0.00 3.16
1278 1754 3.663176 CTGCCACCACAAGCACCG 61.663 66.667 0.00 0.00 34.68 4.94
1519 1995 7.219484 ACAATTTTCAAGTTAGTATGCTGCT 57.781 32.000 0.00 0.00 0.00 4.24
1732 2247 5.011533 ACTCATCATGCTGGATTCTAGTACC 59.988 44.000 0.00 0.00 0.00 3.34
1733 2248 4.021981 TCATCATGCTGGATTCTAGTACCG 60.022 45.833 0.00 0.00 0.00 4.02
1734 2249 3.296854 TCATGCTGGATTCTAGTACCGT 58.703 45.455 0.00 0.00 0.00 4.83
1735 2250 4.466827 TCATGCTGGATTCTAGTACCGTA 58.533 43.478 0.00 0.00 0.00 4.02
1910 2434 6.268566 CAGGAAAAGAATTATAAGTGCCAGC 58.731 40.000 0.00 0.00 0.00 4.85
1934 2458 2.468532 AACTCAAGTTTTGCGGTTCG 57.531 45.000 0.00 0.00 33.93 3.95
2183 3783 5.186198 AGAAGTTATGTCTTGTACCCATGC 58.814 41.667 0.00 0.00 0.00 4.06
2206 3841 2.414481 CCGATCACAATAGCATAGCAGC 59.586 50.000 0.00 0.00 0.00 5.25
2439 4091 2.613506 CGAGTTCGTTGTTGGCCCC 61.614 63.158 0.00 0.00 34.11 5.80
2450 4102 2.618794 TGTTGGCCCCATCTCATTTTT 58.381 42.857 0.00 0.00 0.00 1.94
2457 4109 1.570803 CCATCTCATTTTTGGGGCCA 58.429 50.000 4.39 0.00 0.00 5.36
2503 4155 7.743116 TTCCAGGTAACATTACTCCTAATCA 57.257 36.000 2.00 0.00 41.41 2.57
2526 4180 8.208718 TCACAAAGCATATATACACCAGAAAC 57.791 34.615 0.00 0.00 0.00 2.78
2531 4185 8.807948 AAGCATATATACACCAGAAACAAGTT 57.192 30.769 0.00 0.00 0.00 2.66
2536 4190 2.561569 ACACCAGAAACAAGTTCTCCG 58.438 47.619 0.00 0.00 45.25 4.63
2579 4415 6.705825 ACAAAAATATTCTGTTTGGAGGTTGC 59.294 34.615 13.16 0.00 36.72 4.17
2616 4452 5.448654 TGAAGCTCTACAATATGCCCAATT 58.551 37.500 0.00 0.00 0.00 2.32
2696 4534 3.636300 AGCAGTGCTGGTTTTAAATGTCA 59.364 39.130 18.98 0.00 38.24 3.58
2829 4667 3.146066 TCAAGGCAGTGGTGTCATAAAC 58.854 45.455 0.00 0.00 0.00 2.01
3410 5252 5.484715 TGATGCAAGTAGTTAGGTGTTACC 58.515 41.667 0.00 0.00 38.99 2.85
3490 5332 7.459795 TCCAGATATAACATAGAGAGCAGTG 57.540 40.000 0.00 0.00 0.00 3.66
3753 5595 4.222124 AGACTTGGCAGGTAACCATAAG 57.778 45.455 0.82 0.00 36.96 1.73
3765 5607 0.981183 ACCATAAGGAGACCGCAACA 59.019 50.000 0.00 0.00 38.69 3.33
3768 5610 2.422597 CATAAGGAGACCGCAACACAA 58.577 47.619 0.00 0.00 0.00 3.33
3852 5694 4.270153 TCAGGGCTGGTCCAGGGT 62.270 66.667 20.72 0.00 36.21 4.34
3864 5706 3.013648 TGGTCCAGGGTATAAGGTTCTCT 59.986 47.826 0.00 0.00 0.00 3.10
3891 5733 2.700371 ACACATGTCAGAGGTTCAGACA 59.300 45.455 0.00 6.74 44.90 3.41
3894 5736 1.788229 TGTCAGAGGTTCAGACACCA 58.212 50.000 0.86 0.00 37.87 4.17
3909 5751 5.189539 TCAGACACCAATCATGATAGACCAA 59.810 40.000 9.04 0.00 0.00 3.67
4244 6086 2.419297 GCTGAAACTCCATGGACGATCT 60.419 50.000 11.44 0.00 0.00 2.75
4250 6092 0.326143 TCCATGGACGATCTGGGGAA 60.326 55.000 11.44 0.00 0.00 3.97
4284 6126 8.204160 GCCTGGTGTGAATATATATACAGCATA 58.796 37.037 21.96 8.39 46.37 3.14
4339 6239 4.130118 AGCTGAAACACGAGAAGAAACAT 58.870 39.130 0.00 0.00 0.00 2.71
4439 6340 5.352846 GCACTGCCACCTTTTAAAAGAAAAA 59.647 36.000 26.11 9.11 38.28 1.94
4461 6362 4.527509 AAGCCACATCTATATGTCTCCG 57.472 45.455 0.00 0.00 44.70 4.63
4519 6420 9.609346 ACACTACACAATTACATAAGTATTCCC 57.391 33.333 0.00 0.00 0.00 3.97
4520 6421 9.832445 CACTACACAATTACATAAGTATTCCCT 57.168 33.333 0.00 0.00 0.00 4.20
4523 6424 6.990349 ACACAATTACATAAGTATTCCCTCCG 59.010 38.462 0.00 0.00 0.00 4.63
4524 6425 6.990349 CACAATTACATAAGTATTCCCTCCGT 59.010 38.462 0.00 0.00 0.00 4.69
4525 6426 8.145767 CACAATTACATAAGTATTCCCTCCGTA 58.854 37.037 0.00 0.00 0.00 4.02
4526 6427 8.707449 ACAATTACATAAGTATTCCCTCCGTAA 58.293 33.333 0.00 0.00 0.00 3.18
4527 6428 9.550406 CAATTACATAAGTATTCCCTCCGTAAA 57.450 33.333 0.00 0.00 0.00 2.01
4528 6429 9.551734 AATTACATAAGTATTCCCTCCGTAAAC 57.448 33.333 0.00 0.00 0.00 2.01
4529 6430 6.803366 ACATAAGTATTCCCTCCGTAAACT 57.197 37.500 0.00 0.00 0.00 2.66
4530 6431 7.902920 ACATAAGTATTCCCTCCGTAAACTA 57.097 36.000 0.00 0.00 0.00 2.24
4531 6432 8.310122 ACATAAGTATTCCCTCCGTAAACTAA 57.690 34.615 0.00 0.00 0.00 2.24
4532 6433 8.931568 ACATAAGTATTCCCTCCGTAAACTAAT 58.068 33.333 0.00 0.00 0.00 1.73
4540 6441 9.993454 ATTCCCTCCGTAAACTAATATAAGAAC 57.007 33.333 0.00 0.00 0.00 3.01
4541 6442 7.651808 TCCCTCCGTAAACTAATATAAGAACG 58.348 38.462 0.00 0.00 0.00 3.95
4542 6443 7.285401 TCCCTCCGTAAACTAATATAAGAACGT 59.715 37.037 0.00 0.00 0.00 3.99
4543 6444 7.922811 CCCTCCGTAAACTAATATAAGAACGTT 59.077 37.037 0.00 0.00 0.00 3.99
4544 6445 9.305925 CCTCCGTAAACTAATATAAGAACGTTT 57.694 33.333 0.46 0.00 0.00 3.60
4561 6462 9.978044 AAGAACGTTTAGATCACTACTTTAGTT 57.022 29.630 0.46 0.00 36.76 2.24
4571 6472 9.733219 AGATCACTACTTTAGTTATCTAAACGC 57.267 33.333 7.85 0.00 43.99 4.84
4572 6473 9.733219 GATCACTACTTTAGTTATCTAAACGCT 57.267 33.333 2.47 0.00 40.05 5.07
4573 6474 9.733219 ATCACTACTTTAGTTATCTAAACGCTC 57.267 33.333 2.47 0.00 40.05 5.03
4574 6475 8.954350 TCACTACTTTAGTTATCTAAACGCTCT 58.046 33.333 2.47 0.00 40.05 4.09
4575 6476 9.570488 CACTACTTTAGTTATCTAAACGCTCTT 57.430 33.333 2.47 0.00 40.05 2.85
4592 6493 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
4593 6494 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
4594 6495 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
4595 6496 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
4596 6497 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
4641 6542 5.235850 ACAATTACAGTGTGGTACCATCA 57.764 39.130 19.72 14.89 0.00 3.07
4760 6661 0.315886 TCAAAGAGCCAAGCGTACGA 59.684 50.000 21.65 0.00 0.00 3.43
4761 6662 0.438830 CAAAGAGCCAAGCGTACGAC 59.561 55.000 21.65 10.59 0.00 4.34
4795 6696 9.248291 TGTGTCAGAAATGAAAGCTAAAAATTC 57.752 29.630 0.00 0.00 0.00 2.17
4840 6741 6.061441 TCACATTATAATTGGCTCCGTTGAT 58.939 36.000 0.00 0.00 0.00 2.57
4910 6811 2.671070 GCAAACTGCGGGTGATTAAAGG 60.671 50.000 0.00 0.00 31.71 3.11
4916 6817 2.297597 TGCGGGTGATTAAAGGGTTTTG 59.702 45.455 0.00 0.00 0.00 2.44
4920 6821 4.038162 CGGGTGATTAAAGGGTTTTGACAA 59.962 41.667 0.00 0.00 0.00 3.18
4923 6824 6.014584 GGGTGATTAAAGGGTTTTGACAAGAT 60.015 38.462 0.00 0.00 0.00 2.40
4984 6888 1.680338 AAGATGGCGAAGGTAATGGC 58.320 50.000 0.00 0.00 0.00 4.40
4985 6889 0.179018 AGATGGCGAAGGTAATGGCC 60.179 55.000 0.00 0.00 45.76 5.36
5061 6965 3.809832 TGAACTGCTTTACACTCTTCAGC 59.190 43.478 0.00 0.00 0.00 4.26
5076 6980 0.606401 TCAGCTTAACCTGGCAGTGC 60.606 55.000 14.43 6.55 33.64 4.40
5077 6981 0.890542 CAGCTTAACCTGGCAGTGCA 60.891 55.000 18.61 2.11 0.00 4.57
5078 6982 0.890996 AGCTTAACCTGGCAGTGCAC 60.891 55.000 18.61 9.40 0.00 4.57
5091 6995 1.741706 CAGTGCACCAGCTATCAAAGG 59.258 52.381 14.63 0.00 42.74 3.11
5145 7050 1.109323 AACCTTGCAGGCCACAACTC 61.109 55.000 5.01 0.00 39.63 3.01
5177 7082 1.203001 TGGGTCTGGGGAAAACACATC 60.203 52.381 0.00 0.00 0.00 3.06
5219 7124 3.134081 TGATTCCCACCGGAGAACTAATC 59.866 47.826 9.46 9.93 40.10 1.75
5223 7128 1.200519 CACCGGAGAACTAATCCCCA 58.799 55.000 9.46 0.00 32.86 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.131826 CAAATTCGTCGGCGTGGAC 59.868 57.895 10.18 0.00 39.49 4.02
25 26 2.030401 CCAAATTCGTCGGCGTGGA 61.030 57.895 10.18 2.24 39.49 4.02
26 27 2.478746 CCAAATTCGTCGGCGTGG 59.521 61.111 10.18 5.73 39.49 4.94
27 28 2.235536 GACCCAAATTCGTCGGCGTG 62.236 60.000 10.18 0.00 39.49 5.34
28 29 2.030958 GACCCAAATTCGTCGGCGT 61.031 57.895 10.18 0.00 39.49 5.68
29 30 2.782615 GACCCAAATTCGTCGGCG 59.217 61.111 1.15 1.15 39.92 6.46
30 31 2.782615 CGACCCAAATTCGTCGGC 59.217 61.111 12.43 0.00 46.21 5.54
33 34 3.189702 TCCATTTTCGACCCAAATTCGTC 59.810 43.478 0.00 0.00 37.73 4.20
34 35 3.150767 TCCATTTTCGACCCAAATTCGT 58.849 40.909 0.00 0.00 37.73 3.85
35 36 3.840890 TCCATTTTCGACCCAAATTCG 57.159 42.857 0.00 0.00 37.85 3.34
36 37 4.682787 GGATCCATTTTCGACCCAAATTC 58.317 43.478 6.95 0.00 0.00 2.17
37 38 3.130340 CGGATCCATTTTCGACCCAAATT 59.870 43.478 13.41 0.00 0.00 1.82
38 39 2.687935 CGGATCCATTTTCGACCCAAAT 59.312 45.455 13.41 0.00 0.00 2.32
39 40 2.088423 CGGATCCATTTTCGACCCAAA 58.912 47.619 13.41 0.00 0.00 3.28
40 41 1.745232 CGGATCCATTTTCGACCCAA 58.255 50.000 13.41 0.00 0.00 4.12
41 42 0.746563 GCGGATCCATTTTCGACCCA 60.747 55.000 13.41 0.00 0.00 4.51
42 43 1.772063 CGCGGATCCATTTTCGACCC 61.772 60.000 13.41 0.00 0.00 4.46
43 44 1.641677 CGCGGATCCATTTTCGACC 59.358 57.895 13.41 0.00 0.00 4.79
44 45 1.011131 GCGCGGATCCATTTTCGAC 60.011 57.895 13.41 0.49 0.00 4.20
45 46 2.521771 CGCGCGGATCCATTTTCGA 61.522 57.895 24.84 0.00 0.00 3.71
46 47 2.053116 CGCGCGGATCCATTTTCG 60.053 61.111 24.84 7.67 0.00 3.46
47 48 2.177580 TCCGCGCGGATCCATTTTC 61.178 57.895 45.37 0.00 39.76 2.29
48 49 2.124901 TCCGCGCGGATCCATTTT 60.125 55.556 45.37 0.00 39.76 1.82
61 62 1.389784 CCATTTTCAAAACGCATCCGC 59.610 47.619 0.00 0.00 38.22 5.54
62 63 2.671596 ACCATTTTCAAAACGCATCCG 58.328 42.857 0.00 0.00 41.14 4.18
63 64 3.121113 CGAACCATTTTCAAAACGCATCC 59.879 43.478 0.00 0.00 0.00 3.51
64 65 3.121113 CCGAACCATTTTCAAAACGCATC 59.879 43.478 0.00 0.00 0.00 3.91
65 66 3.056304 CCGAACCATTTTCAAAACGCAT 58.944 40.909 0.00 0.00 0.00 4.73
66 67 2.159226 ACCGAACCATTTTCAAAACGCA 60.159 40.909 0.00 0.00 0.00 5.24
67 68 2.217620 CACCGAACCATTTTCAAAACGC 59.782 45.455 0.00 0.00 0.00 4.84
68 69 3.696898 TCACCGAACCATTTTCAAAACG 58.303 40.909 0.00 0.00 0.00 3.60
69 70 4.678622 ACTCACCGAACCATTTTCAAAAC 58.321 39.130 0.00 0.00 0.00 2.43
70 71 4.993029 ACTCACCGAACCATTTTCAAAA 57.007 36.364 0.00 0.00 0.00 2.44
71 72 4.440802 CCAACTCACCGAACCATTTTCAAA 60.441 41.667 0.00 0.00 0.00 2.69
72 73 3.067461 CCAACTCACCGAACCATTTTCAA 59.933 43.478 0.00 0.00 0.00 2.69
73 74 2.621055 CCAACTCACCGAACCATTTTCA 59.379 45.455 0.00 0.00 0.00 2.69
74 75 2.030274 CCCAACTCACCGAACCATTTTC 60.030 50.000 0.00 0.00 0.00 2.29
75 76 1.960689 CCCAACTCACCGAACCATTTT 59.039 47.619 0.00 0.00 0.00 1.82
76 77 1.616159 CCCAACTCACCGAACCATTT 58.384 50.000 0.00 0.00 0.00 2.32
77 78 0.893727 GCCCAACTCACCGAACCATT 60.894 55.000 0.00 0.00 0.00 3.16
78 79 1.303317 GCCCAACTCACCGAACCAT 60.303 57.895 0.00 0.00 0.00 3.55
79 80 2.112297 GCCCAACTCACCGAACCA 59.888 61.111 0.00 0.00 0.00 3.67
80 81 2.671963 GGCCCAACTCACCGAACC 60.672 66.667 0.00 0.00 0.00 3.62
81 82 1.966451 CTGGCCCAACTCACCGAAC 60.966 63.158 0.00 0.00 0.00 3.95
82 83 2.429930 CTGGCCCAACTCACCGAA 59.570 61.111 0.00 0.00 0.00 4.30
83 84 4.329545 GCTGGCCCAACTCACCGA 62.330 66.667 0.00 0.00 0.00 4.69
84 85 3.925630 ATGCTGGCCCAACTCACCG 62.926 63.158 0.00 0.00 0.00 4.94
85 86 1.187567 AAATGCTGGCCCAACTCACC 61.188 55.000 0.00 0.00 0.00 4.02
86 87 0.681175 AAAATGCTGGCCCAACTCAC 59.319 50.000 0.00 0.00 0.00 3.51
87 88 1.070445 CAAAAATGCTGGCCCAACTCA 59.930 47.619 0.00 0.00 0.00 3.41
88 89 1.070601 ACAAAAATGCTGGCCCAACTC 59.929 47.619 0.00 0.00 0.00 3.01
89 90 1.070601 GACAAAAATGCTGGCCCAACT 59.929 47.619 0.00 0.00 0.00 3.16
90 91 1.511850 GACAAAAATGCTGGCCCAAC 58.488 50.000 0.00 0.00 0.00 3.77
91 92 0.396060 GGACAAAAATGCTGGCCCAA 59.604 50.000 0.00 0.00 35.74 4.12
92 93 1.814772 CGGACAAAAATGCTGGCCCA 61.815 55.000 0.00 0.00 38.98 5.36
93 94 1.079888 CGGACAAAAATGCTGGCCC 60.080 57.895 0.00 0.00 38.98 5.80
94 95 1.079888 CCGGACAAAAATGCTGGCC 60.080 57.895 0.00 0.00 38.77 5.36
95 96 0.388520 GTCCGGACAAAAATGCTGGC 60.389 55.000 29.75 0.00 0.00 4.85
96 97 0.109781 CGTCCGGACAAAAATGCTGG 60.110 55.000 32.80 9.78 0.00 4.85
97 98 0.591170 ACGTCCGGACAAAAATGCTG 59.409 50.000 32.80 16.06 0.00 4.41
98 99 1.001815 CAACGTCCGGACAAAAATGCT 60.002 47.619 32.80 5.20 0.00 3.79
99 100 1.002251 TCAACGTCCGGACAAAAATGC 60.002 47.619 32.80 4.81 0.00 3.56
100 101 2.646250 GTCAACGTCCGGACAAAAATG 58.354 47.619 32.80 21.65 34.22 2.32
101 102 1.262151 CGTCAACGTCCGGACAAAAAT 59.738 47.619 32.80 11.65 33.66 1.82
102 103 0.651551 CGTCAACGTCCGGACAAAAA 59.348 50.000 32.80 13.51 33.66 1.94
103 104 2.299562 CGTCAACGTCCGGACAAAA 58.700 52.632 32.80 13.14 33.66 2.44
104 105 4.015578 CGTCAACGTCCGGACAAA 57.984 55.556 32.80 12.79 33.66 2.83
111 112 3.945304 ATTCCGCCCGTCAACGTCC 62.945 63.158 1.48 0.00 37.74 4.79
112 113 2.433664 ATTCCGCCCGTCAACGTC 60.434 61.111 1.48 0.00 37.74 4.34
113 114 2.515996 ATCATTCCGCCCGTCAACGT 62.516 55.000 1.48 0.00 37.74 3.99
114 115 1.366111 AATCATTCCGCCCGTCAACG 61.366 55.000 0.00 0.00 39.44 4.10
115 116 0.377203 GAATCATTCCGCCCGTCAAC 59.623 55.000 0.00 0.00 0.00 3.18
116 117 1.087202 CGAATCATTCCGCCCGTCAA 61.087 55.000 0.00 0.00 0.00 3.18
117 118 1.520564 CGAATCATTCCGCCCGTCA 60.521 57.895 0.00 0.00 0.00 4.35
118 119 2.882366 GCGAATCATTCCGCCCGTC 61.882 63.158 0.00 0.00 45.06 4.79
119 120 2.895372 GCGAATCATTCCGCCCGT 60.895 61.111 0.00 0.00 45.06 5.28
124 125 2.808958 AACGCGGCGAATCATTCCG 61.809 57.895 30.94 4.09 45.46 4.30
125 126 1.297598 CAACGCGGCGAATCATTCC 60.298 57.895 30.94 0.00 0.00 3.01
126 127 1.297598 CCAACGCGGCGAATCATTC 60.298 57.895 30.94 0.00 0.00 2.67
127 128 1.705337 CTCCAACGCGGCGAATCATT 61.705 55.000 30.94 9.57 33.14 2.57
128 129 2.125310 TCCAACGCGGCGAATCAT 60.125 55.556 30.94 2.30 33.14 2.45
129 130 2.813474 CTCCAACGCGGCGAATCA 60.813 61.111 30.94 8.93 33.14 2.57
130 131 2.388232 AACTCCAACGCGGCGAATC 61.388 57.895 30.94 0.00 33.14 2.52
131 132 2.358247 AACTCCAACGCGGCGAAT 60.358 55.556 30.94 14.53 33.14 3.34
132 133 3.342627 CAACTCCAACGCGGCGAA 61.343 61.111 30.94 10.13 33.14 4.70
135 136 2.677573 AAAAGCAACTCCAACGCGGC 62.678 55.000 12.47 0.36 33.14 6.53
136 137 0.248866 AAAAAGCAACTCCAACGCGG 60.249 50.000 12.47 0.00 0.00 6.46
137 138 2.392933 TAAAAAGCAACTCCAACGCG 57.607 45.000 3.53 3.53 0.00 6.01
138 139 5.164225 CGTTTATAAAAAGCAACTCCAACGC 60.164 40.000 0.00 0.00 0.00 4.84
139 140 5.910723 ACGTTTATAAAAAGCAACTCCAACG 59.089 36.000 0.00 0.00 39.26 4.10
140 141 6.361481 GGACGTTTATAAAAAGCAACTCCAAC 59.639 38.462 0.00 0.00 0.00 3.77
141 142 6.263617 AGGACGTTTATAAAAAGCAACTCCAA 59.736 34.615 0.00 0.00 0.00 3.53
142 143 5.766174 AGGACGTTTATAAAAAGCAACTCCA 59.234 36.000 0.00 0.00 0.00 3.86
143 144 6.084277 CAGGACGTTTATAAAAAGCAACTCC 58.916 40.000 0.00 1.42 0.00 3.85
144 145 5.567915 GCAGGACGTTTATAAAAAGCAACTC 59.432 40.000 0.00 0.00 0.00 3.01
145 146 5.009210 TGCAGGACGTTTATAAAAAGCAACT 59.991 36.000 0.00 0.00 0.00 3.16
146 147 5.216648 TGCAGGACGTTTATAAAAAGCAAC 58.783 37.500 0.00 0.00 0.00 4.17
147 148 5.440234 TGCAGGACGTTTATAAAAAGCAA 57.560 34.783 0.00 0.00 0.00 3.91
148 149 5.637006 ATGCAGGACGTTTATAAAAAGCA 57.363 34.783 0.00 5.01 0.00 3.91
149 150 6.944557 AAATGCAGGACGTTTATAAAAAGC 57.055 33.333 0.00 0.00 35.68 3.51
150 151 8.455682 TCCTAAATGCAGGACGTTTATAAAAAG 58.544 33.333 0.00 0.17 39.89 2.27
151 152 8.338072 TCCTAAATGCAGGACGTTTATAAAAA 57.662 30.769 0.00 0.00 39.89 1.94
152 153 7.925043 TCCTAAATGCAGGACGTTTATAAAA 57.075 32.000 0.00 0.00 39.89 1.52
153 154 7.925043 TTCCTAAATGCAGGACGTTTATAAA 57.075 32.000 0.00 0.00 44.56 1.40
154 155 8.514330 AATTCCTAAATGCAGGACGTTTATAA 57.486 30.769 0.00 0.00 44.56 0.98
155 156 7.227910 GGAATTCCTAAATGCAGGACGTTTATA 59.772 37.037 17.73 0.00 44.56 0.98
156 157 6.039382 GGAATTCCTAAATGCAGGACGTTTAT 59.961 38.462 17.73 0.00 44.56 1.40
157 158 5.355910 GGAATTCCTAAATGCAGGACGTTTA 59.644 40.000 17.73 0.00 44.56 2.01
158 159 4.157840 GGAATTCCTAAATGCAGGACGTTT 59.842 41.667 17.73 0.00 44.56 3.60
159 160 3.694566 GGAATTCCTAAATGCAGGACGTT 59.305 43.478 17.73 0.00 44.56 3.99
160 161 3.054361 AGGAATTCCTAAATGCAGGACGT 60.054 43.478 25.99 0.00 46.48 4.34
161 162 3.313526 CAGGAATTCCTAAATGCAGGACG 59.686 47.826 26.61 6.19 46.65 4.79
162 163 3.067320 GCAGGAATTCCTAAATGCAGGAC 59.933 47.826 26.61 5.08 46.65 3.85
163 164 3.290710 GCAGGAATTCCTAAATGCAGGA 58.709 45.455 26.61 0.00 46.65 3.86
164 165 2.033801 CGCAGGAATTCCTAAATGCAGG 59.966 50.000 26.61 12.69 46.65 4.85
165 166 2.684881 ACGCAGGAATTCCTAAATGCAG 59.315 45.455 26.61 21.14 46.65 4.41
166 167 2.722094 ACGCAGGAATTCCTAAATGCA 58.278 42.857 26.61 0.00 46.65 3.96
167 168 3.003378 GGTACGCAGGAATTCCTAAATGC 59.997 47.826 26.61 23.36 46.65 3.56
168 169 4.451900 AGGTACGCAGGAATTCCTAAATG 58.548 43.478 26.61 16.03 46.65 2.32
169 170 4.444449 GGAGGTACGCAGGAATTCCTAAAT 60.444 45.833 26.61 16.14 46.65 1.40
170 171 3.118519 GGAGGTACGCAGGAATTCCTAAA 60.119 47.826 26.61 9.61 46.65 1.85
171 172 2.433239 GGAGGTACGCAGGAATTCCTAA 59.567 50.000 26.61 9.97 46.65 2.69
172 173 2.037144 GGAGGTACGCAGGAATTCCTA 58.963 52.381 26.61 8.71 46.65 2.94
174 175 0.529992 CGGAGGTACGCAGGAATTCC 60.530 60.000 17.31 17.31 0.00 3.01
175 176 2.973420 CGGAGGTACGCAGGAATTC 58.027 57.895 0.00 0.00 0.00 2.17
189 190 0.392998 ATAGCTTGGTTGCACCGGAG 60.393 55.000 9.46 0.00 42.58 4.63
190 191 0.906066 TATAGCTTGGTTGCACCGGA 59.094 50.000 9.46 0.00 42.58 5.14
191 192 1.745232 TTATAGCTTGGTTGCACCGG 58.255 50.000 0.00 0.00 42.58 5.28
192 193 2.159435 GGTTTATAGCTTGGTTGCACCG 60.159 50.000 0.00 0.00 42.58 4.94
193 194 2.823154 TGGTTTATAGCTTGGTTGCACC 59.177 45.455 0.00 0.00 39.22 5.01
194 195 4.513198 TTGGTTTATAGCTTGGTTGCAC 57.487 40.909 0.00 0.00 34.99 4.57
195 196 4.342378 TGTTTGGTTTATAGCTTGGTTGCA 59.658 37.500 0.00 0.00 34.99 4.08
196 197 4.877282 TGTTTGGTTTATAGCTTGGTTGC 58.123 39.130 0.00 0.00 0.00 4.17
197 198 6.325919 TCTGTTTGGTTTATAGCTTGGTTG 57.674 37.500 0.00 0.00 0.00 3.77
198 199 5.476945 CCTCTGTTTGGTTTATAGCTTGGTT 59.523 40.000 0.00 0.00 0.00 3.67
199 200 5.010282 CCTCTGTTTGGTTTATAGCTTGGT 58.990 41.667 0.00 0.00 0.00 3.67
200 201 5.253330 TCCTCTGTTTGGTTTATAGCTTGG 58.747 41.667 0.00 0.00 0.00 3.61
201 202 6.817765 TTCCTCTGTTTGGTTTATAGCTTG 57.182 37.500 0.00 0.00 0.00 4.01
202 203 7.669722 TCAATTCCTCTGTTTGGTTTATAGCTT 59.330 33.333 0.00 0.00 0.00 3.74
203 204 7.175104 TCAATTCCTCTGTTTGGTTTATAGCT 58.825 34.615 0.00 0.00 0.00 3.32
204 205 7.391148 TCAATTCCTCTGTTTGGTTTATAGC 57.609 36.000 0.00 0.00 0.00 2.97
205 206 9.793252 CATTCAATTCCTCTGTTTGGTTTATAG 57.207 33.333 0.00 0.00 0.00 1.31
206 207 8.250332 GCATTCAATTCCTCTGTTTGGTTTATA 58.750 33.333 0.00 0.00 0.00 0.98
207 208 7.099120 GCATTCAATTCCTCTGTTTGGTTTAT 58.901 34.615 0.00 0.00 0.00 1.40
208 209 6.454795 GCATTCAATTCCTCTGTTTGGTTTA 58.545 36.000 0.00 0.00 0.00 2.01
209 210 5.299949 GCATTCAATTCCTCTGTTTGGTTT 58.700 37.500 0.00 0.00 0.00 3.27
219 220 0.305922 CTCGCGGCATTCAATTCCTC 59.694 55.000 6.13 0.00 0.00 3.71
240 241 1.328680 GCAATATGCATATCCCTCGCG 59.671 52.381 19.35 0.00 44.26 5.87
262 263 3.462021 GACCTACCTGAGCAATGATCAC 58.538 50.000 0.00 0.00 0.00 3.06
283 284 1.269309 CCGCTCTTCTTCAGGATACCG 60.269 57.143 0.00 0.00 37.17 4.02
354 360 1.005037 TGTGTGTGGATCGGCAGTC 60.005 57.895 0.00 0.00 0.00 3.51
356 362 1.004560 ACTGTGTGTGGATCGGCAG 60.005 57.895 0.00 0.00 0.00 4.85
359 365 0.390340 CCTGACTGTGTGTGGATCGG 60.390 60.000 0.00 0.00 0.00 4.18
384 390 1.593196 ATGTGACCACAAGTTCGGTG 58.407 50.000 6.95 0.00 45.41 4.94
410 425 5.187772 TCAGAGTATTCTTTGGAGCAGCTTA 59.812 40.000 0.00 0.00 0.00 3.09
414 429 4.825422 TGTCAGAGTATTCTTTGGAGCAG 58.175 43.478 0.00 0.00 0.00 4.24
467 491 0.617413 ACCTGTCTCCTTGCTCCATG 59.383 55.000 0.00 0.00 0.00 3.66
540 569 0.107214 CCATTCGTACCACCTGGCAT 60.107 55.000 0.00 0.00 39.32 4.40
547 576 3.004862 CCTTTGTACCCATTCGTACCAC 58.995 50.000 0.00 0.00 38.26 4.16
628 986 8.141835 TCCATTATACATGAAGAAATGTGTCG 57.858 34.615 0.00 0.00 40.93 4.35
712 1082 1.563435 CCTCGCAACTGCACAGAGTG 61.563 60.000 4.31 3.46 42.21 3.51
782 1225 3.580319 GGGGTTCTGGTGGGTGCT 61.580 66.667 0.00 0.00 0.00 4.40
807 1257 2.087646 GCTGGGACAAAGAATGGAGAC 58.912 52.381 0.00 0.00 38.70 3.36
818 1268 0.321671 CTTCTTCGAGGCTGGGACAA 59.678 55.000 0.00 0.00 38.70 3.18
860 1312 3.954258 CTGGAGGGGTTTAAATAGCCAAG 59.046 47.826 0.00 0.00 37.42 3.61
882 1334 1.064825 TTGAGTCTGGGGAGGGAAAC 58.935 55.000 0.00 0.00 0.00 2.78
917 1369 1.033574 GGGGATAGAGTGACTGACGG 58.966 60.000 0.00 0.00 0.00 4.79
918 1370 1.678627 CAGGGGATAGAGTGACTGACG 59.321 57.143 0.00 0.00 0.00 4.35
919 1371 1.410882 GCAGGGGATAGAGTGACTGAC 59.589 57.143 0.00 0.00 0.00 3.51
921 1373 0.755686 GGCAGGGGATAGAGTGACTG 59.244 60.000 0.00 0.00 0.00 3.51
923 1375 0.755686 CAGGCAGGGGATAGAGTGAC 59.244 60.000 0.00 0.00 0.00 3.67
926 1378 0.399233 GTCCAGGCAGGGGATAGAGT 60.399 60.000 0.00 0.00 36.67 3.24
927 1379 0.399091 TGTCCAGGCAGGGGATAGAG 60.399 60.000 0.00 0.00 36.67 2.43
928 1380 0.691078 GTGTCCAGGCAGGGGATAGA 60.691 60.000 0.00 0.00 36.67 1.98
929 1381 0.692419 AGTGTCCAGGCAGGGGATAG 60.692 60.000 0.00 0.00 36.67 2.08
930 1382 0.982852 CAGTGTCCAGGCAGGGGATA 60.983 60.000 0.00 0.00 36.67 2.59
931 1383 2.125912 AGTGTCCAGGCAGGGGAT 59.874 61.111 0.00 0.00 36.67 3.85
932 1384 2.930019 CAGTGTCCAGGCAGGGGA 60.930 66.667 0.00 0.00 38.24 4.81
933 1385 4.729918 GCAGTGTCCAGGCAGGGG 62.730 72.222 0.00 0.00 38.24 4.79
934 1386 4.729918 GGCAGTGTCCAGGCAGGG 62.730 72.222 0.00 0.00 38.24 4.45
935 1387 3.278072 ATGGCAGTGTCCAGGCAGG 62.278 63.158 11.20 0.00 43.80 4.85
939 1391 0.545171 AGATGATGGCAGTGTCCAGG 59.455 55.000 11.20 0.00 39.89 4.45
1007 1465 4.500116 GCAGGACGGCGAGACCTC 62.500 72.222 16.62 0.00 43.03 3.85
1037 1495 2.263852 CGGAGCTCAGAGCAAGCA 59.736 61.111 24.64 0.00 45.56 3.91
1088 1546 2.045536 CCCTGTTCTGCCTCCAGC 60.046 66.667 0.00 0.00 39.00 4.85
1110 1568 3.907474 TCCTTCTGAACATGGTGGTAGAA 59.093 43.478 0.00 0.00 0.00 2.10
1113 1571 4.506625 CCTTTCCTTCTGAACATGGTGGTA 60.507 45.833 0.00 0.00 31.05 3.25
1209 1685 0.035056 CATTCCCACCACCTGGACTC 60.035 60.000 0.00 0.00 43.95 3.36
1224 1700 3.459378 CTGCGACGCATGGCCATTC 62.459 63.158 24.71 11.14 38.13 2.67
1259 1735 3.218470 GTGCTTGTGGTGGCAGCA 61.218 61.111 16.56 16.56 39.22 4.41
1444 1920 3.625313 GGAAGCAGAGTATTTTCAGAGGC 59.375 47.826 0.00 0.00 0.00 4.70
1519 1995 4.837860 ACTAATTTTGGCAAGATTGTCCCA 59.162 37.500 22.17 4.85 30.03 4.37
1679 2193 5.068198 ACATATGCCCAATCATGTGAGAAAC 59.932 40.000 1.58 0.00 37.65 2.78
1732 2247 8.365647 ACTCATAGACCCCAATTAAATACTACG 58.634 37.037 0.00 0.00 0.00 3.51
1845 2369 5.734498 GCACGTATAAAATGTCTTGCAAGAG 59.266 40.000 29.13 15.25 35.32 2.85
1910 2434 3.769536 ACCGCAAAACTTGAGTTTCTTG 58.230 40.909 9.37 6.73 46.47 3.02
2183 3783 3.392882 TGCTATGCTATTGTGATCGGTG 58.607 45.455 0.00 0.00 0.00 4.94
2206 3841 5.351465 ACTCCATAGCATTGTTTACTGAACG 59.649 40.000 0.00 0.00 41.29 3.95
2371 4023 3.282157 CACCTTGCACGCTGCTGT 61.282 61.111 10.54 0.00 45.31 4.40
2394 4046 1.412387 GTGGTACAAGAACCGTCGAC 58.588 55.000 5.18 5.18 44.16 4.20
2439 4091 3.008266 AGTTTGGCCCCAAAAATGAGATG 59.992 43.478 13.65 0.00 45.86 2.90
2450 4102 3.233231 GCTTGCAGTTTGGCCCCA 61.233 61.111 0.00 0.00 0.00 4.96
2457 4109 7.341769 TGGAATATAATGTTAGGCTTGCAGTTT 59.658 33.333 0.00 0.00 0.00 2.66
2503 4155 8.574251 TTGTTTCTGGTGTATATATGCTTTGT 57.426 30.769 2.37 0.00 0.00 2.83
2531 4185 3.893200 TGAGTTCCTTCAAGTAACGGAGA 59.107 43.478 0.00 0.00 0.00 3.71
2536 4190 8.926715 ATTTTTGTTGAGTTCCTTCAAGTAAC 57.073 30.769 0.00 0.00 37.72 2.50
2579 4415 4.630111 AGAGCTTCAGAGAGTTTCAGTTG 58.370 43.478 0.00 0.00 0.00 3.16
2616 4452 3.523157 TGGAATGTAGCCAAGGAATCTGA 59.477 43.478 0.00 0.00 31.13 3.27
2696 4534 6.211184 TCCATCCAGCTACAAAATGAAAACAT 59.789 34.615 0.00 0.00 0.00 2.71
2760 4598 0.597568 CGAGCCATTGAAGCAAACCA 59.402 50.000 0.00 0.00 0.00 3.67
2829 4667 2.356135 CACCATTCTTTACCCTGACCG 58.644 52.381 0.00 0.00 0.00 4.79
3477 5319 5.245751 ACAGATTATCCCACTGCTCTCTATG 59.754 44.000 0.00 0.00 35.38 2.23
3753 5595 1.234821 TGAATTGTGTTGCGGTCTCC 58.765 50.000 0.00 0.00 0.00 3.71
3787 5629 8.311109 AGTGTGATTGGATATATGTATGCGTAA 58.689 33.333 0.00 0.00 31.84 3.18
3790 5632 7.436376 CCTAGTGTGATTGGATATATGTATGCG 59.564 40.741 0.00 0.00 31.84 4.73
3891 5733 7.935755 CAGTAGAATTGGTCTATCATGATTGGT 59.064 37.037 14.65 0.00 41.00 3.67
3894 5736 6.648310 CGCAGTAGAATTGGTCTATCATGATT 59.352 38.462 14.65 0.00 41.00 2.57
3909 5751 3.994392 ACGATGTTTTGTCGCAGTAGAAT 59.006 39.130 0.00 0.00 42.56 2.40
4244 6086 0.251742 CCAGGCACAAGAATTCCCCA 60.252 55.000 0.65 0.00 0.00 4.96
4250 6092 2.363306 TTCACACCAGGCACAAGAAT 57.637 45.000 0.00 0.00 0.00 2.40
4284 6126 8.229253 ACACATGCATCATACATCACTATTTT 57.771 30.769 0.00 0.00 0.00 1.82
4286 6128 7.605309 CCTACACATGCATCATACATCACTATT 59.395 37.037 0.00 0.00 0.00 1.73
4371 6271 6.274579 AGATATCGCTGCATTATCAGATCTG 58.725 40.000 17.07 17.07 36.19 2.90
4378 6278 9.578439 TGCATATATAGATATCGCTGCATTATC 57.422 33.333 0.00 5.66 32.60 1.75
4379 6279 9.933723 TTGCATATATAGATATCGCTGCATTAT 57.066 29.630 13.55 0.00 35.08 1.28
4380 6280 9.762933 TTTGCATATATAGATATCGCTGCATTA 57.237 29.630 13.55 0.00 35.08 1.90
4381 6281 8.667076 TTTGCATATATAGATATCGCTGCATT 57.333 30.769 13.55 0.00 35.08 3.56
4382 6282 7.387122 CCTTTGCATATATAGATATCGCTGCAT 59.613 37.037 13.55 0.00 35.08 3.96
4383 6283 6.703165 CCTTTGCATATATAGATATCGCTGCA 59.297 38.462 0.00 10.61 34.17 4.41
4384 6284 6.347240 GCCTTTGCATATATAGATATCGCTGC 60.347 42.308 0.00 2.81 37.47 5.25
4385 6285 6.146837 GGCCTTTGCATATATAGATATCGCTG 59.853 42.308 0.00 0.00 40.13 5.18
4386 6286 6.183361 TGGCCTTTGCATATATAGATATCGCT 60.183 38.462 3.32 0.00 40.13 4.93
4387 6287 5.991606 TGGCCTTTGCATATATAGATATCGC 59.008 40.000 3.32 5.40 40.13 4.58
4388 6288 6.648310 CCTGGCCTTTGCATATATAGATATCG 59.352 42.308 3.32 0.00 40.13 2.92
4439 6340 4.588951 TCGGAGACATATAGATGTGGCTTT 59.411 41.667 7.92 0.00 46.64 3.51
4443 6344 3.119316 GCCTCGGAGACATATAGATGTGG 60.119 52.174 7.92 2.90 46.64 4.17
4461 6362 4.390264 ACCAACTTGTCTAAAGAAGCCTC 58.610 43.478 0.00 0.00 28.90 4.70
4501 6402 9.550406 TTTACGGAGGGAATACTTATGTAATTG 57.450 33.333 0.00 0.00 31.80 2.32
4504 6405 8.310122 AGTTTACGGAGGGAATACTTATGTAA 57.690 34.615 0.00 0.00 31.80 2.41
4515 6416 8.137437 CGTTCTTATATTAGTTTACGGAGGGAA 58.863 37.037 0.00 0.00 0.00 3.97
4517 6418 7.428826 ACGTTCTTATATTAGTTTACGGAGGG 58.571 38.462 13.71 0.00 32.54 4.30
4518 6419 8.862550 AACGTTCTTATATTAGTTTACGGAGG 57.137 34.615 0.00 0.00 32.54 4.30
4535 6436 9.978044 AACTAAAGTAGTGATCTAAACGTTCTT 57.022 29.630 0.00 0.00 39.39 2.52
4546 6447 9.733219 AGCGTTTAGATAACTAAAGTAGTGATC 57.267 33.333 5.51 5.03 45.42 2.92
4547 6448 9.733219 GAGCGTTTAGATAACTAAAGTAGTGAT 57.267 33.333 5.51 0.00 45.42 3.06
4548 6449 8.954350 AGAGCGTTTAGATAACTAAAGTAGTGA 58.046 33.333 5.51 0.00 45.42 3.41
4549 6450 9.570488 AAGAGCGTTTAGATAACTAAAGTAGTG 57.430 33.333 5.51 0.00 45.42 2.74
4566 6467 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
4567 6468 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
4568 6469 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
4569 6470 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
4570 6471 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
4585 6486 9.275572 ACCAATAAAATTACTACTCCCTCTGTA 57.724 33.333 0.00 0.00 0.00 2.74
4586 6487 8.047310 CACCAATAAAATTACTACTCCCTCTGT 58.953 37.037 0.00 0.00 0.00 3.41
4587 6488 8.265055 TCACCAATAAAATTACTACTCCCTCTG 58.735 37.037 0.00 0.00 0.00 3.35
4588 6489 8.388656 TCACCAATAAAATTACTACTCCCTCT 57.611 34.615 0.00 0.00 0.00 3.69
4589 6490 9.628500 AATCACCAATAAAATTACTACTCCCTC 57.372 33.333 0.00 0.00 0.00 4.30
4590 6491 9.990868 AAATCACCAATAAAATTACTACTCCCT 57.009 29.630 0.00 0.00 0.00 4.20
4626 6527 3.126001 ACTTGTGATGGTACCACACTG 57.874 47.619 30.52 26.25 43.37 3.66
4627 6528 3.135712 TGAACTTGTGATGGTACCACACT 59.864 43.478 30.52 19.54 43.37 3.55
4628 6529 3.250040 GTGAACTTGTGATGGTACCACAC 59.750 47.826 27.21 27.21 43.37 3.82
4641 6542 5.339008 TGACTACTCAGTTGTGAACTTGT 57.661 39.130 0.00 0.00 40.46 3.16
4760 6661 4.269183 TCATTTCTGACACACCAGTTTGT 58.731 39.130 0.00 0.00 35.71 2.83
4761 6662 4.898829 TCATTTCTGACACACCAGTTTG 57.101 40.909 0.00 0.00 35.71 2.93
4795 6696 7.977904 TGTGATGAATTAAATGTAGAGCACTG 58.022 34.615 0.00 0.00 0.00 3.66
4833 6734 1.195448 GCAGTCAAGTCACATCAACGG 59.805 52.381 0.00 0.00 0.00 4.44
4834 6735 1.866601 TGCAGTCAAGTCACATCAACG 59.133 47.619 0.00 0.00 0.00 4.10
4840 6741 5.826601 TTATGTTTTGCAGTCAAGTCACA 57.173 34.783 0.00 0.00 33.12 3.58
4874 6775 4.438744 GCAGTTTGCACTTTACAGTTCAGT 60.439 41.667 0.00 0.00 44.26 3.41
4883 6784 0.665835 CACCCGCAGTTTGCACTTTA 59.334 50.000 1.69 0.00 45.36 1.85
4890 6791 2.094752 CCCTTTAATCACCCGCAGTTTG 60.095 50.000 0.00 0.00 0.00 2.93
4910 6811 3.575965 AATCGCCATCTTGTCAAAACC 57.424 42.857 0.00 0.00 0.00 3.27
4916 6817 4.632153 AGGTATGTAATCGCCATCTTGTC 58.368 43.478 0.00 0.00 0.00 3.18
4920 6821 6.605471 TTGATAGGTATGTAATCGCCATCT 57.395 37.500 0.00 0.00 0.00 2.90
4923 6824 6.353404 TGATTGATAGGTATGTAATCGCCA 57.647 37.500 0.00 0.00 32.01 5.69
4957 6858 1.676916 CCTTCGCCATCTTTGCTCTCA 60.677 52.381 0.00 0.00 0.00 3.27
5054 6958 1.699634 ACTGCCAGGTTAAGCTGAAGA 59.300 47.619 31.19 15.54 0.00 2.87
5061 6965 0.537143 TGGTGCACTGCCAGGTTAAG 60.537 55.000 17.98 0.00 0.00 1.85
5076 6980 2.012673 GAGTGCCTTTGATAGCTGGTG 58.987 52.381 0.00 0.00 0.00 4.17
5077 6981 1.065126 GGAGTGCCTTTGATAGCTGGT 60.065 52.381 0.00 0.00 0.00 4.00
5078 6982 1.211457 AGGAGTGCCTTTGATAGCTGG 59.789 52.381 0.00 0.00 43.90 4.85
5091 6995 0.107508 TGCCAAGCTGATAGGAGTGC 60.108 55.000 0.00 0.00 0.00 4.40
5145 7050 0.392193 CAGACCCAAGGTGCTGCTAG 60.392 60.000 0.00 0.00 35.25 3.42
5177 7082 0.607217 TGTGCTCATTGGCTGGAGTG 60.607 55.000 0.00 0.00 33.66 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.