Multiple sequence alignment - TraesCS1D01G425100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G425100 chr1D 100.000 3320 0 0 1 3320 479102029 479105348 0.000000e+00 6131
1 TraesCS1D01G425100 chr1A 90.379 977 51 18 342 1298 575383808 575384761 0.000000e+00 1243
2 TraesCS1D01G425100 chr1A 87.963 1080 65 31 2146 3197 575385455 575386497 0.000000e+00 1214
3 TraesCS1D01G425100 chr1A 93.027 674 39 5 1399 2068 575384788 575385457 0.000000e+00 977
4 TraesCS1D01G425100 chr1A 94.355 124 5 2 3198 3320 575386536 575386658 4.370000e-44 189
5 TraesCS1D01G425100 chr1B 89.111 900 63 17 419 1298 667262204 667263088 0.000000e+00 1086
6 TraesCS1D01G425100 chr1B 93.520 679 32 4 1399 2069 667263114 667263788 0.000000e+00 1000
7 TraesCS1D01G425100 chr1B 89.027 802 61 10 2146 2933 667263788 667264576 0.000000e+00 968
8 TraesCS1D01G425100 chr1B 80.729 384 40 21 2960 3320 667264574 667264946 5.460000e-68 268
9 TraesCS1D01G425100 chr7D 93.466 352 17 5 1 346 135378964 135378613 4.910000e-143 518
10 TraesCS1D01G425100 chr7D 89.444 360 27 8 1 354 607583428 607583782 8.450000e-121 444
11 TraesCS1D01G425100 chr7D 88.701 177 15 4 1865 2040 205730074 205730246 9.330000e-51 211
12 TraesCS1D01G425100 chr7D 78.529 340 58 8 2198 2528 205730313 205730646 3.360000e-50 209
13 TraesCS1D01G425100 chr7D 91.954 87 3 3 2064 2149 613452306 613452389 5.820000e-23 119
14 TraesCS1D01G425100 chr5D 92.571 350 18 4 1 345 545975919 545976265 2.300000e-136 496
15 TraesCS1D01G425100 chr5D 90.217 92 3 5 2067 2154 428386499 428386588 7.530000e-22 115
16 TraesCS1D01G425100 chr2D 92.286 350 21 4 1 344 374124999 374124650 2.980000e-135 492
17 TraesCS1D01G425100 chr2D 91.884 345 23 4 1 341 594645307 594645650 8.330000e-131 477
18 TraesCS1D01G425100 chr3D 91.837 343 21 4 1 339 500626201 500626540 3.880000e-129 472
19 TraesCS1D01G425100 chr6A 90.652 353 28 4 1 349 107467180 107467531 6.490000e-127 464
20 TraesCS1D01G425100 chr4D 90.113 354 26 6 1 346 19174638 19174990 5.050000e-123 451
21 TraesCS1D01G425100 chr4D 93.333 90 2 3 2061 2147 303843465 303843553 2.690000e-26 130
22 TraesCS1D01G425100 chr2A 89.356 357 26 6 1 349 266630447 266630799 3.930000e-119 438
23 TraesCS1D01G425100 chr7A 89.266 177 14 4 1865 2040 218234044 218234216 2.010000e-52 217
24 TraesCS1D01G425100 chr7A 78.235 340 59 8 2198 2528 218234283 218234616 1.560000e-48 204
25 TraesCS1D01G425100 chr7A 94.048 84 3 2 2066 2148 513573797 513573879 3.480000e-25 126
26 TraesCS1D01G425100 chr7A 93.023 86 2 3 2065 2147 290616049 290616133 4.500000e-24 122
27 TraesCS1D01G425100 chr7B 88.701 177 15 4 1865 2040 196390189 196390017 9.330000e-51 211
28 TraesCS1D01G425100 chr7B 78.443 334 57 9 2204 2528 196389944 196389617 1.560000e-48 204
29 TraesCS1D01G425100 chr2B 92.857 84 4 2 2065 2147 655996549 655996631 1.620000e-23 121
30 TraesCS1D01G425100 chr2B 89.583 96 6 4 2065 2157 350306689 350306783 5.820000e-23 119
31 TraesCS1D01G425100 chr3B 90.217 92 6 3 2065 2153 380679548 380679457 2.090000e-22 117
32 TraesCS1D01G425100 chr4A 88.660 97 8 3 2054 2147 589013028 589013124 7.530000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G425100 chr1D 479102029 479105348 3319 False 6131.00 6131 100.00000 1 3320 1 chr1D.!!$F1 3319
1 TraesCS1D01G425100 chr1A 575383808 575386658 2850 False 905.75 1243 91.43100 342 3320 4 chr1A.!!$F1 2978
2 TraesCS1D01G425100 chr1B 667262204 667264946 2742 False 830.50 1086 88.09675 419 3320 4 chr1B.!!$F1 2901
3 TraesCS1D01G425100 chr7D 205730074 205730646 572 False 210.00 211 83.61500 1865 2528 2 chr7D.!!$F3 663
4 TraesCS1D01G425100 chr7A 218234044 218234616 572 False 210.50 217 83.75050 1865 2528 2 chr7A.!!$F3 663
5 TraesCS1D01G425100 chr7B 196389617 196390189 572 True 207.50 211 83.57200 1865 2528 2 chr7B.!!$R1 663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 182 0.036294 CGTGGGGGAGGACTTTTCTC 60.036 60.0 0.0 0.0 0.0 2.87 F
2079 2111 0.103208 CATGCTACTCACTCCGTCCC 59.897 60.0 0.0 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2130 2162 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.0 0.0 0.0 0.0 4.12 R
3116 3223 1.702182 TGGAATTGCACAGCCAAAGA 58.298 45.0 0.0 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.659440 TTTTTGAAGCAGGTTCTTCTTGT 57.341 34.783 13.45 0.00 42.15 3.16
29 30 6.767524 TTTTTGAAGCAGGTTCTTCTTGTA 57.232 33.333 13.45 0.00 42.15 2.41
30 31 5.751243 TTTGAAGCAGGTTCTTCTTGTAC 57.249 39.130 13.45 0.00 42.15 2.90
31 32 4.689612 TGAAGCAGGTTCTTCTTGTACT 57.310 40.909 13.45 0.00 42.15 2.73
32 33 5.036117 TGAAGCAGGTTCTTCTTGTACTT 57.964 39.130 13.45 0.00 42.15 2.24
33 34 5.437060 TGAAGCAGGTTCTTCTTGTACTTT 58.563 37.500 13.45 0.00 42.15 2.66
34 35 5.296780 TGAAGCAGGTTCTTCTTGTACTTTG 59.703 40.000 13.45 0.00 42.15 2.77
35 36 4.137543 AGCAGGTTCTTCTTGTACTTTGG 58.862 43.478 0.00 0.00 0.00 3.28
36 37 3.253432 GCAGGTTCTTCTTGTACTTTGGG 59.747 47.826 0.00 0.00 0.00 4.12
37 38 3.821033 CAGGTTCTTCTTGTACTTTGGGG 59.179 47.826 0.00 0.00 0.00 4.96
38 39 2.557056 GGTTCTTCTTGTACTTTGGGGC 59.443 50.000 0.00 0.00 0.00 5.80
39 40 3.487372 GTTCTTCTTGTACTTTGGGGCT 58.513 45.455 0.00 0.00 0.00 5.19
40 41 3.140325 TCTTCTTGTACTTTGGGGCTG 57.860 47.619 0.00 0.00 0.00 4.85
41 42 1.541588 CTTCTTGTACTTTGGGGCTGC 59.458 52.381 0.00 0.00 0.00 5.25
42 43 0.476338 TCTTGTACTTTGGGGCTGCA 59.524 50.000 0.50 0.00 0.00 4.41
43 44 1.133637 TCTTGTACTTTGGGGCTGCAA 60.134 47.619 0.50 0.00 0.00 4.08
44 45 1.895131 CTTGTACTTTGGGGCTGCAAT 59.105 47.619 0.50 0.00 0.00 3.56
45 46 1.255882 TGTACTTTGGGGCTGCAATG 58.744 50.000 0.50 0.00 0.00 2.82
46 47 0.532115 GTACTTTGGGGCTGCAATGG 59.468 55.000 0.50 0.00 0.00 3.16
47 48 1.257055 TACTTTGGGGCTGCAATGGC 61.257 55.000 0.50 0.00 41.68 4.40
54 55 4.789075 GCTGCAATGGCCGCTGTG 62.789 66.667 0.47 0.00 45.53 3.66
55 56 3.367743 CTGCAATGGCCGCTGTGT 61.368 61.111 0.00 0.00 40.13 3.72
56 57 2.033294 TGCAATGGCCGCTGTGTA 59.967 55.556 0.00 0.00 40.13 2.90
57 58 1.985447 CTGCAATGGCCGCTGTGTAG 61.985 60.000 0.00 0.00 40.13 2.74
58 59 2.764314 GCAATGGCCGCTGTGTAGG 61.764 63.158 0.00 0.00 0.00 3.18
59 60 1.078497 CAATGGCCGCTGTGTAGGA 60.078 57.895 0.00 0.00 0.00 2.94
60 61 1.091771 CAATGGCCGCTGTGTAGGAG 61.092 60.000 0.00 0.00 0.00 3.69
61 62 2.257409 AATGGCCGCTGTGTAGGAGG 62.257 60.000 0.00 0.00 0.00 4.30
62 63 3.075005 GGCCGCTGTGTAGGAGGA 61.075 66.667 0.00 0.00 0.00 3.71
63 64 2.656069 GGCCGCTGTGTAGGAGGAA 61.656 63.158 0.00 0.00 0.00 3.36
64 65 1.153549 GCCGCTGTGTAGGAGGAAG 60.154 63.158 0.00 0.00 0.00 3.46
65 66 1.605058 GCCGCTGTGTAGGAGGAAGA 61.605 60.000 0.00 0.00 0.00 2.87
66 67 0.895530 CCGCTGTGTAGGAGGAAGAA 59.104 55.000 0.00 0.00 0.00 2.52
67 68 1.134965 CCGCTGTGTAGGAGGAAGAAG 60.135 57.143 0.00 0.00 0.00 2.85
68 69 1.134965 CGCTGTGTAGGAGGAAGAAGG 60.135 57.143 0.00 0.00 0.00 3.46
69 70 1.208293 GCTGTGTAGGAGGAAGAAGGG 59.792 57.143 0.00 0.00 0.00 3.95
70 71 1.208293 CTGTGTAGGAGGAAGAAGGGC 59.792 57.143 0.00 0.00 0.00 5.19
71 72 0.542333 GTGTAGGAGGAAGAAGGGCC 59.458 60.000 0.00 0.00 0.00 5.80
72 73 0.417841 TGTAGGAGGAAGAAGGGCCT 59.582 55.000 0.00 0.00 37.18 5.19
73 74 1.203440 TGTAGGAGGAAGAAGGGCCTT 60.203 52.381 21.09 21.09 33.84 4.35
74 75 1.210722 GTAGGAGGAAGAAGGGCCTTG 59.789 57.143 26.47 0.00 33.84 3.61
75 76 1.210885 AGGAGGAAGAAGGGCCTTGG 61.211 60.000 26.47 0.00 33.84 3.61
76 77 1.208165 GGAGGAAGAAGGGCCTTGGA 61.208 60.000 26.47 0.00 33.84 3.53
77 78 0.922626 GAGGAAGAAGGGCCTTGGAT 59.077 55.000 26.47 9.29 33.84 3.41
78 79 0.922626 AGGAAGAAGGGCCTTGGATC 59.077 55.000 26.47 17.58 0.00 3.36
79 80 0.106469 GGAAGAAGGGCCTTGGATCC 60.106 60.000 26.47 22.34 0.00 3.36
80 81 0.106469 GAAGAAGGGCCTTGGATCCC 60.106 60.000 26.47 8.01 42.94 3.85
84 85 3.761182 GGGCCTTGGATCCCTTCT 58.239 61.111 9.90 0.00 39.46 2.85
85 86 2.010900 GGGCCTTGGATCCCTTCTT 58.989 57.895 9.90 0.00 39.46 2.52
86 87 0.336392 GGGCCTTGGATCCCTTCTTT 59.664 55.000 9.90 0.00 39.46 2.52
87 88 1.686428 GGGCCTTGGATCCCTTCTTTC 60.686 57.143 9.90 0.00 39.46 2.62
88 89 1.383523 GCCTTGGATCCCTTCTTTCG 58.616 55.000 9.90 0.00 0.00 3.46
89 90 1.340114 GCCTTGGATCCCTTCTTTCGT 60.340 52.381 9.90 0.00 0.00 3.85
90 91 2.359900 CCTTGGATCCCTTCTTTCGTG 58.640 52.381 9.90 0.00 0.00 4.35
91 92 2.359900 CTTGGATCCCTTCTTTCGTGG 58.640 52.381 9.90 0.00 0.00 4.94
92 93 0.618458 TGGATCCCTTCTTTCGTGGG 59.382 55.000 9.90 0.00 42.20 4.61
101 102 3.849563 TTCTTTCGTGGGAAGGAAGAA 57.150 42.857 0.00 0.00 41.59 2.52
102 103 3.402628 TCTTTCGTGGGAAGGAAGAAG 57.597 47.619 0.00 0.00 35.58 2.85
103 104 2.038557 TCTTTCGTGGGAAGGAAGAAGG 59.961 50.000 0.00 0.00 35.58 3.46
104 105 1.724545 TTCGTGGGAAGGAAGAAGGA 58.275 50.000 0.00 0.00 0.00 3.36
105 106 1.724545 TCGTGGGAAGGAAGAAGGAA 58.275 50.000 0.00 0.00 0.00 3.36
106 107 1.346722 TCGTGGGAAGGAAGAAGGAAC 59.653 52.381 0.00 0.00 0.00 3.62
107 108 1.610886 CGTGGGAAGGAAGAAGGAACC 60.611 57.143 0.00 0.00 0.00 3.62
108 109 0.690762 TGGGAAGGAAGAAGGAACCG 59.309 55.000 0.00 0.00 0.00 4.44
109 110 0.691332 GGGAAGGAAGAAGGAACCGT 59.309 55.000 0.00 0.00 0.00 4.83
110 111 1.610886 GGGAAGGAAGAAGGAACCGTG 60.611 57.143 0.00 0.00 0.00 4.94
111 112 1.610886 GGAAGGAAGAAGGAACCGTGG 60.611 57.143 0.00 0.00 0.00 4.94
112 113 1.071857 GAAGGAAGAAGGAACCGTGGT 59.928 52.381 0.00 0.00 0.00 4.16
113 114 0.396811 AGGAAGAAGGAACCGTGGTG 59.603 55.000 0.00 0.00 0.00 4.17
114 115 0.605589 GGAAGAAGGAACCGTGGTGG 60.606 60.000 0.00 0.00 46.41 4.61
115 116 1.228154 AAGAAGGAACCGTGGTGGC 60.228 57.895 0.00 0.00 43.94 5.01
116 117 1.990160 AAGAAGGAACCGTGGTGGCA 61.990 55.000 0.00 0.00 43.94 4.92
117 118 1.303317 GAAGGAACCGTGGTGGCAT 60.303 57.895 0.00 0.00 43.94 4.40
118 119 1.586154 GAAGGAACCGTGGTGGCATG 61.586 60.000 0.00 0.00 43.94 4.06
119 120 3.061848 GGAACCGTGGTGGCATGG 61.062 66.667 0.00 0.00 43.94 3.66
120 121 3.061848 GAACCGTGGTGGCATGGG 61.062 66.667 0.00 0.00 43.94 4.00
121 122 4.676951 AACCGTGGTGGCATGGGG 62.677 66.667 0.00 0.00 43.94 4.96
148 149 3.470888 CGTGGGAGGGCTGGGTAG 61.471 72.222 0.00 0.00 0.00 3.18
149 150 3.090532 GTGGGAGGGCTGGGTAGG 61.091 72.222 0.00 0.00 0.00 3.18
150 151 3.622263 TGGGAGGGCTGGGTAGGT 61.622 66.667 0.00 0.00 0.00 3.08
151 152 2.258225 TGGGAGGGCTGGGTAGGTA 61.258 63.158 0.00 0.00 0.00 3.08
152 153 1.765255 GGGAGGGCTGGGTAGGTAC 60.765 68.421 0.00 0.00 0.00 3.34
153 154 1.002533 GGAGGGCTGGGTAGGTACA 59.997 63.158 0.00 0.00 0.00 2.90
154 155 1.049289 GGAGGGCTGGGTAGGTACAG 61.049 65.000 0.00 0.00 37.76 2.74
159 160 1.522569 CTGGGTAGGTACAGCTGGC 59.477 63.158 19.93 10.34 0.00 4.85
160 161 1.972660 CTGGGTAGGTACAGCTGGCC 61.973 65.000 19.93 19.06 0.00 5.36
161 162 1.993391 GGGTAGGTACAGCTGGCCA 60.993 63.158 25.02 4.71 0.00 5.36
162 163 1.221021 GGTAGGTACAGCTGGCCAC 59.779 63.158 25.02 20.11 0.00 5.01
163 164 1.153628 GTAGGTACAGCTGGCCACG 60.154 63.158 25.02 0.00 0.00 4.94
164 165 1.608336 TAGGTACAGCTGGCCACGT 60.608 57.895 25.02 18.86 0.00 4.49
165 166 1.884075 TAGGTACAGCTGGCCACGTG 61.884 60.000 25.02 9.08 0.00 4.49
166 167 2.742372 GTACAGCTGGCCACGTGG 60.742 66.667 30.66 30.66 38.53 4.94
167 168 4.015406 TACAGCTGGCCACGTGGG 62.015 66.667 34.58 19.86 40.85 4.61
176 177 2.928396 CCACGTGGGGGAGGACTT 60.928 66.667 27.57 0.00 0.00 3.01
177 178 2.526046 CCACGTGGGGGAGGACTTT 61.526 63.158 27.57 0.00 0.00 2.66
178 179 1.454539 CACGTGGGGGAGGACTTTT 59.545 57.895 7.95 0.00 0.00 2.27
179 180 0.605589 CACGTGGGGGAGGACTTTTC 60.606 60.000 7.95 0.00 0.00 2.29
180 181 0.767060 ACGTGGGGGAGGACTTTTCT 60.767 55.000 0.00 0.00 0.00 2.52
181 182 0.036294 CGTGGGGGAGGACTTTTCTC 60.036 60.000 0.00 0.00 0.00 2.87
182 183 1.363246 GTGGGGGAGGACTTTTCTCT 58.637 55.000 0.00 0.00 0.00 3.10
183 184 1.279558 GTGGGGGAGGACTTTTCTCTC 59.720 57.143 0.00 0.00 0.00 3.20
184 185 0.537653 GGGGGAGGACTTTTCTCTCG 59.462 60.000 0.00 0.00 32.71 4.04
185 186 1.268066 GGGGAGGACTTTTCTCTCGT 58.732 55.000 0.00 0.00 32.71 4.18
186 187 1.624312 GGGGAGGACTTTTCTCTCGTT 59.376 52.381 0.00 0.00 32.71 3.85
187 188 2.353903 GGGGAGGACTTTTCTCTCGTTC 60.354 54.545 0.00 0.00 32.71 3.95
188 189 2.563620 GGGAGGACTTTTCTCTCGTTCT 59.436 50.000 0.00 0.00 0.00 3.01
189 190 3.580731 GGAGGACTTTTCTCTCGTTCTG 58.419 50.000 0.00 0.00 0.00 3.02
190 191 3.006003 GGAGGACTTTTCTCTCGTTCTGT 59.994 47.826 0.00 0.00 0.00 3.41
191 192 4.501743 GGAGGACTTTTCTCTCGTTCTGTT 60.502 45.833 0.00 0.00 0.00 3.16
192 193 5.024785 AGGACTTTTCTCTCGTTCTGTTT 57.975 39.130 0.00 0.00 0.00 2.83
193 194 4.811557 AGGACTTTTCTCTCGTTCTGTTTG 59.188 41.667 0.00 0.00 0.00 2.93
194 195 4.519147 GACTTTTCTCTCGTTCTGTTTGC 58.481 43.478 0.00 0.00 0.00 3.68
195 196 3.001330 ACTTTTCTCTCGTTCTGTTTGCG 59.999 43.478 0.00 0.00 0.00 4.85
196 197 0.859232 TTCTCTCGTTCTGTTTGCGC 59.141 50.000 0.00 0.00 0.00 6.09
197 198 0.249280 TCTCTCGTTCTGTTTGCGCA 60.249 50.000 5.66 5.66 0.00 6.09
198 199 0.792640 CTCTCGTTCTGTTTGCGCAT 59.207 50.000 12.75 0.00 0.00 4.73
199 200 1.992667 CTCTCGTTCTGTTTGCGCATA 59.007 47.619 12.75 2.60 0.00 3.14
200 201 2.604914 CTCTCGTTCTGTTTGCGCATAT 59.395 45.455 12.75 0.00 0.00 1.78
201 202 2.603110 TCTCGTTCTGTTTGCGCATATC 59.397 45.455 12.75 5.41 0.00 1.63
202 203 1.323235 TCGTTCTGTTTGCGCATATCG 59.677 47.619 12.75 9.88 42.12 2.92
212 213 3.755404 GCATATCGCGAGTAGCCG 58.245 61.111 16.66 0.44 44.76 5.52
221 222 2.427740 GAGTAGCCGCTCGATCGC 60.428 66.667 11.09 0.00 0.00 4.58
239 240 3.223589 GCGGGTTGGTGCTTGGTT 61.224 61.111 0.00 0.00 0.00 3.67
240 241 2.791868 GCGGGTTGGTGCTTGGTTT 61.792 57.895 0.00 0.00 0.00 3.27
241 242 1.362355 CGGGTTGGTGCTTGGTTTC 59.638 57.895 0.00 0.00 0.00 2.78
242 243 1.745890 GGGTTGGTGCTTGGTTTCC 59.254 57.895 0.00 0.00 0.00 3.13
243 244 0.759060 GGGTTGGTGCTTGGTTTCCT 60.759 55.000 0.00 0.00 0.00 3.36
244 245 1.119684 GGTTGGTGCTTGGTTTCCTT 58.880 50.000 0.00 0.00 0.00 3.36
245 246 1.484653 GGTTGGTGCTTGGTTTCCTTT 59.515 47.619 0.00 0.00 0.00 3.11
246 247 2.093181 GGTTGGTGCTTGGTTTCCTTTT 60.093 45.455 0.00 0.00 0.00 2.27
247 248 3.194861 GTTGGTGCTTGGTTTCCTTTTC 58.805 45.455 0.00 0.00 0.00 2.29
248 249 2.745968 TGGTGCTTGGTTTCCTTTTCT 58.254 42.857 0.00 0.00 0.00 2.52
249 250 2.430332 TGGTGCTTGGTTTCCTTTTCTG 59.570 45.455 0.00 0.00 0.00 3.02
250 251 2.693074 GGTGCTTGGTTTCCTTTTCTGA 59.307 45.455 0.00 0.00 0.00 3.27
251 252 3.132111 GGTGCTTGGTTTCCTTTTCTGAA 59.868 43.478 0.00 0.00 0.00 3.02
252 253 4.363138 GTGCTTGGTTTCCTTTTCTGAAG 58.637 43.478 0.00 0.00 0.00 3.02
253 254 3.181476 TGCTTGGTTTCCTTTTCTGAAGC 60.181 43.478 0.00 0.00 36.06 3.86
254 255 3.181476 GCTTGGTTTCCTTTTCTGAAGCA 60.181 43.478 0.00 0.00 35.68 3.91
255 256 4.363138 CTTGGTTTCCTTTTCTGAAGCAC 58.637 43.478 0.00 0.00 30.25 4.40
256 257 2.357637 TGGTTTCCTTTTCTGAAGCACG 59.642 45.455 0.00 0.00 0.00 5.34
257 258 2.287608 GGTTTCCTTTTCTGAAGCACGG 60.288 50.000 0.00 0.00 0.00 4.94
258 259 1.604604 TTCCTTTTCTGAAGCACGGG 58.395 50.000 0.00 0.00 0.00 5.28
259 260 0.762418 TCCTTTTCTGAAGCACGGGA 59.238 50.000 0.00 0.00 0.00 5.14
260 261 0.875059 CCTTTTCTGAAGCACGGGAC 59.125 55.000 0.00 0.00 0.00 4.46
261 262 0.875059 CTTTTCTGAAGCACGGGACC 59.125 55.000 0.00 0.00 0.00 4.46
262 263 0.882927 TTTTCTGAAGCACGGGACCG 60.883 55.000 9.56 9.56 46.03 4.79
263 264 3.876589 TTCTGAAGCACGGGACCGC 62.877 63.158 11.21 0.00 44.19 5.68
283 284 3.319018 GGGGGACAGGTACTTAGCT 57.681 57.895 0.00 0.00 34.60 3.32
284 285 1.581223 GGGGGACAGGTACTTAGCTT 58.419 55.000 0.00 0.00 34.60 3.74
285 286 1.914108 GGGGGACAGGTACTTAGCTTT 59.086 52.381 0.00 0.00 34.60 3.51
286 287 2.307980 GGGGGACAGGTACTTAGCTTTT 59.692 50.000 0.00 0.00 34.60 2.27
287 288 3.607741 GGGGACAGGTACTTAGCTTTTC 58.392 50.000 0.00 0.00 34.60 2.29
288 289 3.008704 GGGGACAGGTACTTAGCTTTTCA 59.991 47.826 0.00 0.00 34.60 2.69
289 290 4.254492 GGGACAGGTACTTAGCTTTTCAG 58.746 47.826 0.00 0.00 34.60 3.02
290 291 4.254492 GGACAGGTACTTAGCTTTTCAGG 58.746 47.826 0.00 0.00 34.60 3.86
291 292 3.676093 ACAGGTACTTAGCTTTTCAGGC 58.324 45.455 0.00 0.00 34.60 4.85
292 293 3.010420 CAGGTACTTAGCTTTTCAGGCC 58.990 50.000 0.00 0.00 34.60 5.19
293 294 2.007608 GGTACTTAGCTTTTCAGGCCG 58.992 52.381 0.00 0.00 0.00 6.13
294 295 2.007608 GTACTTAGCTTTTCAGGCCGG 58.992 52.381 0.00 0.00 0.00 6.13
295 296 0.960861 ACTTAGCTTTTCAGGCCGGC 60.961 55.000 21.18 21.18 0.00 6.13
296 297 1.657751 CTTAGCTTTTCAGGCCGGCC 61.658 60.000 39.29 39.29 0.00 6.13
297 298 3.969250 TAGCTTTTCAGGCCGGCCG 62.969 63.158 38.88 31.40 41.95 6.13
309 310 4.457496 CGGCCGCTCCATCACACT 62.457 66.667 14.67 0.00 34.01 3.55
310 311 2.900273 GGCCGCTCCATCACACTA 59.100 61.111 0.00 0.00 34.01 2.74
311 312 1.227380 GGCCGCTCCATCACACTAG 60.227 63.158 0.00 0.00 34.01 2.57
312 313 1.517832 GCCGCTCCATCACACTAGT 59.482 57.895 0.00 0.00 0.00 2.57
314 315 0.179100 CCGCTCCATCACACTAGTGG 60.179 60.000 26.12 15.10 45.91 4.00
315 316 0.179100 CGCTCCATCACACTAGTGGG 60.179 60.000 26.12 23.10 45.91 4.61
316 317 0.462759 GCTCCATCACACTAGTGGGC 60.463 60.000 26.12 13.66 45.91 5.36
317 318 0.904649 CTCCATCACACTAGTGGGCA 59.095 55.000 26.12 13.00 45.91 5.36
318 319 0.904649 TCCATCACACTAGTGGGCAG 59.095 55.000 26.12 16.94 45.91 4.85
319 320 0.745845 CCATCACACTAGTGGGCAGC 60.746 60.000 26.12 0.00 45.91 5.25
320 321 0.745845 CATCACACTAGTGGGCAGCC 60.746 60.000 26.12 1.26 45.91 4.85
321 322 2.244117 ATCACACTAGTGGGCAGCCG 62.244 60.000 26.12 6.24 45.91 5.52
322 323 3.706373 ACACTAGTGGGCAGCCGG 61.706 66.667 26.12 0.00 34.19 6.13
338 339 4.814294 GGCCGCCCACTAGACGTG 62.814 72.222 0.00 0.00 43.41 4.49
339 340 4.065281 GCCGCCCACTAGACGTGT 62.065 66.667 0.00 0.00 42.20 4.49
340 341 2.181021 CCGCCCACTAGACGTGTC 59.819 66.667 0.00 0.00 42.20 3.67
341 342 2.341101 CCGCCCACTAGACGTGTCT 61.341 63.158 7.77 7.77 42.20 3.41
342 343 1.028330 CCGCCCACTAGACGTGTCTA 61.028 60.000 9.25 9.25 42.20 2.59
343 344 0.806868 CGCCCACTAGACGTGTCTAA 59.193 55.000 10.68 0.00 41.22 2.10
344 345 1.200716 CGCCCACTAGACGTGTCTAAA 59.799 52.381 10.68 0.00 41.22 1.85
345 346 2.352030 CGCCCACTAGACGTGTCTAAAA 60.352 50.000 10.68 0.00 41.22 1.52
346 347 3.656559 GCCCACTAGACGTGTCTAAAAA 58.343 45.455 10.68 0.00 41.22 1.94
371 372 7.406799 AATGCCTTCACAAAATTTTAGAACG 57.593 32.000 2.44 6.53 0.00 3.95
376 377 7.271438 GCCTTCACAAAATTTTAGAACGATCTC 59.729 37.037 2.44 0.00 37.10 2.75
396 397 0.253327 ACTTTGGATCGGAGGGAAGC 59.747 55.000 0.00 0.00 0.00 3.86
404 405 3.433740 GGATCGGAGGGAAGCAATTTACT 60.434 47.826 0.00 0.00 0.00 2.24
408 409 4.457949 TCGGAGGGAAGCAATTTACTTTTC 59.542 41.667 0.00 0.00 0.00 2.29
642 644 2.359975 GCTTCGGGACCAAGTGGG 60.360 66.667 1.69 0.00 44.81 4.61
908 915 3.393941 GTGATGAGGATGATCCCTTCCTT 59.606 47.826 8.08 0.00 44.30 3.36
918 925 0.905357 TCCCTTCCTTGTAGCTCTGC 59.095 55.000 0.00 0.00 0.00 4.26
985 993 2.829043 TTCTGACGCGACGGAATGGG 62.829 60.000 25.16 1.13 31.33 4.00
1059 1078 0.322187 GCATACCGGTGGTCCTGTTT 60.322 55.000 19.93 0.00 37.09 2.83
1074 1093 2.875296 CTGTTTCCCAGGTCCAAATCA 58.125 47.619 0.00 0.00 37.54 2.57
1116 1135 1.712977 CGCAGCTTCTGAATGCCCTC 61.713 60.000 9.66 0.51 36.60 4.30
1191 1210 9.678260 AGCTTGTACATTTCTAATTCTTCAGAT 57.322 29.630 0.00 0.00 0.00 2.90
1199 1218 9.393512 CATTTCTAATTCTTCAGATGAGAAGGT 57.606 33.333 4.11 0.00 44.01 3.50
1250 1271 4.704540 TCCGGTTGTCAAATGCTTTCATAT 59.295 37.500 0.00 0.00 31.46 1.78
1259 1280 8.186163 TGTCAAATGCTTTCATATCATGTTCTC 58.814 33.333 0.00 0.00 31.46 2.87
1271 1292 7.763071 TCATATCATGTTCTCAAGTCAGTGAAG 59.237 37.037 0.00 0.00 0.00 3.02
1298 1320 7.458409 AATTTGATAGATGACACACAAGCTT 57.542 32.000 0.00 0.00 0.00 3.74
1299 1321 8.565896 AATTTGATAGATGACACACAAGCTTA 57.434 30.769 0.00 0.00 0.00 3.09
1300 1322 6.968131 TTGATAGATGACACACAAGCTTAC 57.032 37.500 0.00 0.00 0.00 2.34
1301 1323 6.036577 TGATAGATGACACACAAGCTTACA 57.963 37.500 0.00 0.00 0.00 2.41
1302 1324 5.869344 TGATAGATGACACACAAGCTTACAC 59.131 40.000 0.00 0.00 0.00 2.90
1303 1325 4.071961 AGATGACACACAAGCTTACACA 57.928 40.909 0.00 0.00 0.00 3.72
1304 1326 4.450976 AGATGACACACAAGCTTACACAA 58.549 39.130 0.00 0.00 0.00 3.33
1305 1327 4.512944 AGATGACACACAAGCTTACACAAG 59.487 41.667 0.00 0.00 34.66 3.16
1341 1364 2.606725 CTCTTCTAGCCGCATGAACTTG 59.393 50.000 0.00 0.00 0.00 3.16
1342 1365 2.028112 TCTTCTAGCCGCATGAACTTGT 60.028 45.455 0.00 0.00 0.00 3.16
1343 1366 1.725641 TCTAGCCGCATGAACTTGTG 58.274 50.000 0.00 0.00 0.00 3.33
1344 1367 1.001974 TCTAGCCGCATGAACTTGTGT 59.998 47.619 0.00 0.00 0.00 3.72
1345 1368 1.806542 CTAGCCGCATGAACTTGTGTT 59.193 47.619 0.00 0.00 39.42 3.32
1346 1369 0.311790 AGCCGCATGAACTTGTGTTG 59.688 50.000 0.00 0.00 36.39 3.33
1347 1370 0.310543 GCCGCATGAACTTGTGTTGA 59.689 50.000 0.00 0.00 36.39 3.18
1348 1371 1.925946 GCCGCATGAACTTGTGTTGAC 60.926 52.381 0.00 0.00 36.39 3.18
1349 1372 1.333308 CCGCATGAACTTGTGTTGACA 59.667 47.619 0.00 0.00 36.39 3.58
1350 1373 2.223456 CCGCATGAACTTGTGTTGACAA 60.223 45.455 0.00 0.00 39.88 3.18
1351 1374 3.433709 CGCATGAACTTGTGTTGACAAA 58.566 40.909 0.00 0.00 41.62 2.83
1352 1375 4.043750 CGCATGAACTTGTGTTGACAAAT 58.956 39.130 0.00 0.00 41.62 2.32
1353 1376 4.503734 CGCATGAACTTGTGTTGACAAATT 59.496 37.500 0.00 0.00 41.62 1.82
1354 1377 5.005586 CGCATGAACTTGTGTTGACAAATTT 59.994 36.000 0.00 0.00 41.62 1.82
1355 1378 6.186785 GCATGAACTTGTGTTGACAAATTTG 58.813 36.000 16.67 16.67 41.62 2.32
1356 1379 6.707711 CATGAACTTGTGTTGACAAATTTGG 58.292 36.000 21.74 4.79 41.62 3.28
1357 1380 4.629200 TGAACTTGTGTTGACAAATTTGGC 59.371 37.500 21.74 19.79 41.62 4.52
1358 1381 4.470334 ACTTGTGTTGACAAATTTGGCT 57.530 36.364 24.13 3.15 41.62 4.75
1359 1382 5.590530 ACTTGTGTTGACAAATTTGGCTA 57.409 34.783 24.13 14.76 41.62 3.93
1360 1383 5.348164 ACTTGTGTTGACAAATTTGGCTAC 58.652 37.500 25.83 25.83 41.62 3.58
1361 1384 4.991153 TGTGTTGACAAATTTGGCTACA 57.009 36.364 29.68 29.68 46.83 2.74
1365 1388 6.019779 TGTTGACAAATTTGGCTACATACC 57.980 37.500 29.68 10.68 44.79 2.73
1366 1389 4.955925 TGACAAATTTGGCTACATACCG 57.044 40.909 24.13 0.00 37.03 4.02
1367 1390 4.580868 TGACAAATTTGGCTACATACCGA 58.419 39.130 24.13 0.00 37.03 4.69
1368 1391 5.004448 TGACAAATTTGGCTACATACCGAA 58.996 37.500 24.13 0.00 37.03 4.30
1369 1392 5.473846 TGACAAATTTGGCTACATACCGAAA 59.526 36.000 24.13 0.00 37.03 3.46
1370 1393 6.151985 TGACAAATTTGGCTACATACCGAAAT 59.848 34.615 24.13 0.00 37.03 2.17
1371 1394 6.560711 ACAAATTTGGCTACATACCGAAATC 58.439 36.000 21.74 0.00 34.22 2.17
1372 1395 5.767816 AATTTGGCTACATACCGAAATCC 57.232 39.130 0.00 0.00 34.22 3.01
1373 1396 3.916359 TTGGCTACATACCGAAATCCA 57.084 42.857 0.00 0.00 0.00 3.41
1374 1397 3.188159 TGGCTACATACCGAAATCCAC 57.812 47.619 0.00 0.00 0.00 4.02
1375 1398 2.769663 TGGCTACATACCGAAATCCACT 59.230 45.455 0.00 0.00 0.00 4.00
1376 1399 3.131396 GGCTACATACCGAAATCCACTG 58.869 50.000 0.00 0.00 0.00 3.66
1377 1400 2.544267 GCTACATACCGAAATCCACTGC 59.456 50.000 0.00 0.00 0.00 4.40
1378 1401 2.779755 ACATACCGAAATCCACTGCA 57.220 45.000 0.00 0.00 0.00 4.41
1379 1402 3.281727 ACATACCGAAATCCACTGCAT 57.718 42.857 0.00 0.00 0.00 3.96
1380 1403 3.620488 ACATACCGAAATCCACTGCATT 58.380 40.909 0.00 0.00 0.00 3.56
1381 1404 3.627577 ACATACCGAAATCCACTGCATTC 59.372 43.478 0.00 0.00 0.00 2.67
1382 1405 2.198827 ACCGAAATCCACTGCATTCA 57.801 45.000 0.00 0.00 0.00 2.57
1383 1406 2.513753 ACCGAAATCCACTGCATTCAA 58.486 42.857 0.00 0.00 0.00 2.69
1384 1407 2.228822 ACCGAAATCCACTGCATTCAAC 59.771 45.455 0.00 0.00 0.00 3.18
1385 1408 2.489329 CCGAAATCCACTGCATTCAACT 59.511 45.455 0.00 0.00 0.00 3.16
1386 1409 3.057315 CCGAAATCCACTGCATTCAACTT 60.057 43.478 0.00 0.00 0.00 2.66
1387 1410 4.549458 CGAAATCCACTGCATTCAACTTT 58.451 39.130 0.00 0.00 0.00 2.66
1388 1411 4.383649 CGAAATCCACTGCATTCAACTTTG 59.616 41.667 0.00 0.00 0.00 2.77
1389 1412 2.798976 TCCACTGCATTCAACTTTGC 57.201 45.000 0.00 0.00 39.33 3.68
1390 1413 2.309613 TCCACTGCATTCAACTTTGCT 58.690 42.857 0.00 0.00 39.60 3.91
1391 1414 3.485394 TCCACTGCATTCAACTTTGCTA 58.515 40.909 0.00 0.00 39.60 3.49
1392 1415 4.081406 TCCACTGCATTCAACTTTGCTAT 58.919 39.130 0.00 0.00 39.60 2.97
1393 1416 4.082625 TCCACTGCATTCAACTTTGCTATG 60.083 41.667 0.00 0.00 39.60 2.23
1394 1417 4.321452 CCACTGCATTCAACTTTGCTATGT 60.321 41.667 0.00 0.00 39.60 2.29
1395 1418 5.106197 CCACTGCATTCAACTTTGCTATGTA 60.106 40.000 0.00 0.00 39.60 2.29
1396 1419 6.025896 CACTGCATTCAACTTTGCTATGTAG 58.974 40.000 14.49 14.49 39.60 2.74
1397 1420 5.707298 ACTGCATTCAACTTTGCTATGTAGT 59.293 36.000 15.31 15.31 39.02 2.73
1398 1421 6.878923 ACTGCATTCAACTTTGCTATGTAGTA 59.121 34.615 17.58 0.00 40.36 1.82
1399 1422 7.072177 TGCATTCAACTTTGCTATGTAGTAC 57.928 36.000 0.00 0.00 39.60 2.73
1400 1423 6.878923 TGCATTCAACTTTGCTATGTAGTACT 59.121 34.615 0.00 0.00 39.60 2.73
1401 1424 7.390440 TGCATTCAACTTTGCTATGTAGTACTT 59.610 33.333 0.00 0.00 39.60 2.24
1411 1434 0.688487 TGTAGTACTTGGTGCCACCC 59.312 55.000 12.25 0.00 37.50 4.61
1432 1455 1.032014 TGTGCTTCAGTTTGCCCTTC 58.968 50.000 0.00 0.00 0.00 3.46
1456 1479 5.394005 CCAAGTGTGAAGGTTTTGTGATTCA 60.394 40.000 0.00 0.00 0.00 2.57
1491 1514 0.523757 GTCTCGTCTTAGCTCACGGC 60.524 60.000 11.59 0.00 42.19 5.68
1562 1585 4.141688 GCTGGTTACCTGAAGCTTATACCT 60.142 45.833 12.54 0.00 36.45 3.08
1607 1630 7.482169 TCCCAGATCCATACTGAATATACAC 57.518 40.000 0.00 0.00 37.54 2.90
1692 1715 2.262915 CGTCTGGAGCCAGGTGTC 59.737 66.667 16.06 4.74 43.75 3.67
1704 1727 2.292292 GCCAGGTGTCGTATGTTTTGTT 59.708 45.455 0.00 0.00 0.00 2.83
1735 1758 3.214328 TCAGTTCAGCACTTCCTTTTCC 58.786 45.455 0.00 0.00 30.92 3.13
1800 1823 6.779117 AGCAGATAATGTCGATTTGTTTGAG 58.221 36.000 0.00 0.00 0.00 3.02
1801 1824 6.595326 AGCAGATAATGTCGATTTGTTTGAGA 59.405 34.615 0.00 0.00 0.00 3.27
1830 1853 0.988063 TGGCTGCAACAGTACCCATA 59.012 50.000 0.50 0.00 33.43 2.74
1834 1857 2.555199 CTGCAACAGTACCCATAGCTC 58.445 52.381 0.00 0.00 0.00 4.09
1837 1860 2.939103 GCAACAGTACCCATAGCTCTTG 59.061 50.000 0.00 0.00 0.00 3.02
1910 1942 4.202182 CCAACCATTTGCAGATATTCAGGG 60.202 45.833 0.00 0.00 0.00 4.45
1985 2017 1.302832 GGTTGTGCCTGTGCTAGCT 60.303 57.895 17.23 0.00 38.71 3.32
2069 2101 1.484240 AGGTTCCTCTGCATGCTACTC 59.516 52.381 20.33 3.05 0.00 2.59
2070 2102 1.208052 GGTTCCTCTGCATGCTACTCA 59.792 52.381 20.33 0.00 0.00 3.41
2071 2103 2.275318 GTTCCTCTGCATGCTACTCAC 58.725 52.381 20.33 5.07 0.00 3.51
2072 2104 1.857965 TCCTCTGCATGCTACTCACT 58.142 50.000 20.33 0.00 0.00 3.41
2073 2105 1.753649 TCCTCTGCATGCTACTCACTC 59.246 52.381 20.33 0.00 0.00 3.51
2074 2106 1.202510 CCTCTGCATGCTACTCACTCC 60.203 57.143 20.33 0.00 0.00 3.85
2075 2107 0.457443 TCTGCATGCTACTCACTCCG 59.543 55.000 20.33 0.00 0.00 4.63
2076 2108 0.174389 CTGCATGCTACTCACTCCGT 59.826 55.000 20.33 0.00 0.00 4.69
2077 2109 0.173481 TGCATGCTACTCACTCCGTC 59.827 55.000 20.33 0.00 0.00 4.79
2078 2110 0.528684 GCATGCTACTCACTCCGTCC 60.529 60.000 11.37 0.00 0.00 4.79
2079 2111 0.103208 CATGCTACTCACTCCGTCCC 59.897 60.000 0.00 0.00 0.00 4.46
2080 2112 0.324368 ATGCTACTCACTCCGTCCCA 60.324 55.000 0.00 0.00 0.00 4.37
2081 2113 0.541063 TGCTACTCACTCCGTCCCAA 60.541 55.000 0.00 0.00 0.00 4.12
2082 2114 0.606604 GCTACTCACTCCGTCCCAAA 59.393 55.000 0.00 0.00 0.00 3.28
2083 2115 1.001633 GCTACTCACTCCGTCCCAAAA 59.998 52.381 0.00 0.00 0.00 2.44
2084 2116 2.354805 GCTACTCACTCCGTCCCAAAAT 60.355 50.000 0.00 0.00 0.00 1.82
2085 2117 3.118884 GCTACTCACTCCGTCCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
2086 2118 4.622220 GCTACTCACTCCGTCCCAAAATAA 60.622 45.833 0.00 0.00 0.00 1.40
2087 2119 3.939066 ACTCACTCCGTCCCAAAATAAG 58.061 45.455 0.00 0.00 0.00 1.73
2088 2120 3.326880 ACTCACTCCGTCCCAAAATAAGT 59.673 43.478 0.00 0.00 0.00 2.24
2089 2121 3.670625 TCACTCCGTCCCAAAATAAGTG 58.329 45.455 0.00 0.00 35.20 3.16
2090 2122 3.071892 TCACTCCGTCCCAAAATAAGTGT 59.928 43.478 0.00 0.00 35.37 3.55
2091 2123 3.435671 CACTCCGTCCCAAAATAAGTGTC 59.564 47.826 0.00 0.00 0.00 3.67
2092 2124 3.326880 ACTCCGTCCCAAAATAAGTGTCT 59.673 43.478 0.00 0.00 0.00 3.41
2093 2125 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2094 2126 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2095 2127 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2096 2128 4.154195 CCGTCCCAAAATAAGTGTCTCAAG 59.846 45.833 0.00 0.00 0.00 3.02
2097 2129 4.378459 CGTCCCAAAATAAGTGTCTCAAGC 60.378 45.833 0.00 0.00 0.00 4.01
2098 2130 4.762251 GTCCCAAAATAAGTGTCTCAAGCT 59.238 41.667 0.00 0.00 0.00 3.74
2099 2131 5.241728 GTCCCAAAATAAGTGTCTCAAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
2100 2132 6.430000 GTCCCAAAATAAGTGTCTCAAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
2101 2133 6.655003 TCCCAAAATAAGTGTCTCAAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
2102 2134 6.431234 CCCAAAATAAGTGTCTCAAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
2103 2135 7.606456 CCCAAAATAAGTGTCTCAAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
2104 2136 8.443937 CCAAAATAAGTGTCTCAAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
2105 2137 8.988934 CAAAATAAGTGTCTCAAGCTTAGTACA 58.011 33.333 0.00 0.36 0.00 2.90
2106 2138 9.555727 AAAATAAGTGTCTCAAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
2107 2139 9.726438 AAATAAGTGTCTCAAGCTTAGTACAAT 57.274 29.630 0.00 0.00 0.00 2.71
2110 2142 7.469537 AGTGTCTCAAGCTTAGTACAATAGT 57.530 36.000 0.00 0.00 0.00 2.12
2111 2143 8.577048 AGTGTCTCAAGCTTAGTACAATAGTA 57.423 34.615 0.00 0.00 0.00 1.82
2126 2158 8.813643 GTACAATAGTACAAAGTGAGACACTT 57.186 34.615 10.73 10.73 46.31 3.16
2137 2169 4.315803 AGTGAGACACTTATTTTGGGACG 58.684 43.478 0.00 0.00 42.59 4.79
2138 2170 3.435671 GTGAGACACTTATTTTGGGACGG 59.564 47.826 0.00 0.00 0.00 4.79
2139 2171 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2140 2172 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2141 2173 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2142 2174 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2143 2175 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2144 2176 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2145 2177 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2150 2182 0.396695 TGGGACGGAGGGAGTACATC 60.397 60.000 0.00 0.00 0.00 3.06
2161 2193 5.992217 GGAGGGAGTACATCATTGTGTTATC 59.008 44.000 0.00 0.00 36.53 1.75
2163 2195 4.750098 GGGAGTACATCATTGTGTTATCCG 59.250 45.833 0.00 0.00 36.83 4.18
2226 2287 3.005261 AGGAGCATCATGTCTATGTCGAC 59.995 47.826 9.11 9.11 36.25 4.20
2304 2365 5.308237 ACTTATCAGAACTCAGACAAACCCT 59.692 40.000 0.00 0.00 0.00 4.34
2405 2475 2.358898 CCAAGGCATGGGAGTTAATTCG 59.641 50.000 0.00 0.00 46.27 3.34
2407 2477 1.212935 AGGCATGGGAGTTAATTCGCT 59.787 47.619 14.66 0.35 0.00 4.93
2430 2500 5.741388 ATGTTTGTCTGACTGAGTGAAAC 57.259 39.130 9.51 10.10 0.00 2.78
2457 2527 5.163269 CCTGTCTGATAATCTGGTCCATGAA 60.163 44.000 0.00 0.00 0.00 2.57
2458 2528 6.312141 TGTCTGATAATCTGGTCCATGAAA 57.688 37.500 0.00 0.00 0.00 2.69
2459 2529 6.115446 TGTCTGATAATCTGGTCCATGAAAC 58.885 40.000 0.00 0.00 0.00 2.78
2460 2530 6.115446 GTCTGATAATCTGGTCCATGAAACA 58.885 40.000 0.00 0.00 0.00 2.83
2461 2531 6.769822 GTCTGATAATCTGGTCCATGAAACAT 59.230 38.462 0.00 0.00 0.00 2.71
2465 2535 5.818136 AATCTGGTCCATGAAACATAACG 57.182 39.130 0.00 0.00 0.00 3.18
2472 2542 5.445010 GGTCCATGAAACATAACGTAACGTC 60.445 44.000 0.00 0.00 39.99 4.34
2484 2554 1.589803 GTAACGTCCACCTTGCACTT 58.410 50.000 0.00 0.00 0.00 3.16
2552 2623 7.697291 GCTTTCATTTGCAAACTTTTCAATGAA 59.303 29.630 15.41 14.35 0.00 2.57
2567 2638 4.006989 TCAATGAACAATCCACTAACCGG 58.993 43.478 0.00 0.00 0.00 5.28
2578 2649 1.300697 CTAACCGGCCCTCGCATAC 60.301 63.158 0.00 0.00 37.59 2.39
2661 2734 5.463286 TGCTGTTTGACATGCTTCTTTATG 58.537 37.500 0.00 0.00 0.00 1.90
2693 2766 1.416401 GAGAAGGGGATGGTGCGAATA 59.584 52.381 0.00 0.00 0.00 1.75
2759 2832 1.754234 GATGAGCGGGTGGCCATTT 60.754 57.895 9.72 0.00 45.17 2.32
2828 2901 5.122239 TCAATGCCTACATTTCTCTGTTTCG 59.878 40.000 0.00 0.00 44.21 3.46
2865 2969 7.573627 CATCTTTAGCATGATGACATACACAG 58.426 38.462 0.00 0.00 41.69 3.66
2871 2975 4.447054 GCATGATGACATACACAGACTAGC 59.553 45.833 0.00 0.00 35.09 3.42
2892 2997 3.490348 CCCAGTGGAAGATTTCAGTTGT 58.510 45.455 11.95 0.00 0.00 3.32
2957 3063 6.803154 AGTTACTTGTATGAAAGCCAACTC 57.197 37.500 0.00 0.00 33.66 3.01
2962 3068 3.420893 TGTATGAAAGCCAACTCCCTTG 58.579 45.455 0.00 0.00 0.00 3.61
2974 3080 2.945456 ACTCCCTTGGGTCAAACTTTC 58.055 47.619 5.51 0.00 0.00 2.62
3019 3125 3.866651 ACTTCAACTTGATGGATCCTCG 58.133 45.455 14.23 0.00 0.00 4.63
3095 3202 7.330946 GCCTTTTGTACAAACTTTTCCCATATC 59.669 37.037 20.43 0.00 0.00 1.63
3097 3204 9.981114 CTTTTGTACAAACTTTTCCCATATCTT 57.019 29.630 20.43 0.00 0.00 2.40
3099 3206 9.757227 TTTGTACAAACTTTTCCCATATCTTTG 57.243 29.630 17.01 0.00 0.00 2.77
3100 3207 7.891561 TGTACAAACTTTTCCCATATCTTTGG 58.108 34.615 0.00 0.00 36.46 3.28
3101 3208 5.793817 ACAAACTTTTCCCATATCTTTGGC 58.206 37.500 0.00 0.00 35.29 4.52
3102 3209 5.543790 ACAAACTTTTCCCATATCTTTGGCT 59.456 36.000 0.00 0.00 35.29 4.75
3103 3210 5.665916 AACTTTTCCCATATCTTTGGCTG 57.334 39.130 0.00 0.00 35.29 4.85
3104 3211 3.448660 ACTTTTCCCATATCTTTGGCTGC 59.551 43.478 0.00 0.00 35.29 5.25
3105 3212 1.679139 TTCCCATATCTTTGGCTGCG 58.321 50.000 0.00 0.00 35.29 5.18
3106 3213 0.819259 TCCCATATCTTTGGCTGCGC 60.819 55.000 0.00 0.00 35.29 6.09
3107 3214 1.102809 CCCATATCTTTGGCTGCGCA 61.103 55.000 10.98 10.98 35.29 6.09
3108 3215 0.740149 CCATATCTTTGGCTGCGCAA 59.260 50.000 13.05 0.00 0.00 4.85
3109 3216 1.338973 CCATATCTTTGGCTGCGCAAT 59.661 47.619 13.05 2.07 0.00 3.56
3110 3217 2.223876 CCATATCTTTGGCTGCGCAATT 60.224 45.455 13.05 0.00 0.00 2.32
3111 3218 2.849880 TATCTTTGGCTGCGCAATTC 57.150 45.000 13.05 4.31 0.00 2.17
3112 3219 0.174162 ATCTTTGGCTGCGCAATTCC 59.826 50.000 13.05 13.69 0.00 3.01
3113 3220 1.177895 TCTTTGGCTGCGCAATTCCA 61.178 50.000 13.05 16.31 0.00 3.53
3114 3221 0.108520 CTTTGGCTGCGCAATTCCAT 60.109 50.000 21.44 0.00 0.00 3.41
3115 3222 1.134753 CTTTGGCTGCGCAATTCCATA 59.865 47.619 21.44 16.88 0.00 2.74
3116 3223 1.401761 TTGGCTGCGCAATTCCATAT 58.598 45.000 21.44 0.00 0.00 1.78
3117 3224 0.953727 TGGCTGCGCAATTCCATATC 59.046 50.000 13.05 0.00 0.00 1.63
3118 3225 1.242076 GGCTGCGCAATTCCATATCT 58.758 50.000 13.05 0.00 0.00 1.98
3119 3226 1.610522 GGCTGCGCAATTCCATATCTT 59.389 47.619 13.05 0.00 0.00 2.40
3120 3227 2.035066 GGCTGCGCAATTCCATATCTTT 59.965 45.455 13.05 0.00 0.00 2.52
3121 3228 3.047796 GCTGCGCAATTCCATATCTTTG 58.952 45.455 13.05 0.00 0.00 2.77
3122 3229 3.635331 CTGCGCAATTCCATATCTTTGG 58.365 45.455 13.05 0.00 38.18 3.28
3123 3230 2.223782 TGCGCAATTCCATATCTTTGGC 60.224 45.455 8.16 0.00 36.66 4.52
3124 3231 2.035066 GCGCAATTCCATATCTTTGGCT 59.965 45.455 0.30 0.00 36.66 4.75
3125 3232 3.635331 CGCAATTCCATATCTTTGGCTG 58.365 45.455 0.00 0.00 36.66 4.85
3254 3399 4.537015 GACTCACCAATTGCACAAACTAC 58.463 43.478 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.659440 ACAAGAAGAACCTGCTTCAAAAA 57.341 34.783 0.00 0.00 45.21 1.94
7 8 5.885912 AGTACAAGAAGAACCTGCTTCAAAA 59.114 36.000 0.00 0.00 45.21 2.44
9 10 5.036117 AGTACAAGAAGAACCTGCTTCAA 57.964 39.130 0.00 0.00 45.21 2.69
10 11 4.689612 AGTACAAGAAGAACCTGCTTCA 57.310 40.909 0.00 0.00 45.21 3.02
11 12 5.278022 CCAAAGTACAAGAAGAACCTGCTTC 60.278 44.000 0.00 0.00 43.57 3.86
12 13 4.580580 CCAAAGTACAAGAAGAACCTGCTT 59.419 41.667 0.00 0.00 27.46 3.91
13 14 4.137543 CCAAAGTACAAGAAGAACCTGCT 58.862 43.478 0.00 0.00 0.00 4.24
14 15 3.253432 CCCAAAGTACAAGAAGAACCTGC 59.747 47.826 0.00 0.00 0.00 4.85
15 16 3.821033 CCCCAAAGTACAAGAAGAACCTG 59.179 47.826 0.00 0.00 0.00 4.00
16 17 3.750922 GCCCCAAAGTACAAGAAGAACCT 60.751 47.826 0.00 0.00 0.00 3.50
17 18 2.557056 GCCCCAAAGTACAAGAAGAACC 59.443 50.000 0.00 0.00 0.00 3.62
18 19 3.253432 CAGCCCCAAAGTACAAGAAGAAC 59.747 47.826 0.00 0.00 0.00 3.01
19 20 3.486383 CAGCCCCAAAGTACAAGAAGAA 58.514 45.455 0.00 0.00 0.00 2.52
20 21 2.814097 GCAGCCCCAAAGTACAAGAAGA 60.814 50.000 0.00 0.00 0.00 2.87
21 22 1.541588 GCAGCCCCAAAGTACAAGAAG 59.458 52.381 0.00 0.00 0.00 2.85
22 23 1.133637 TGCAGCCCCAAAGTACAAGAA 60.134 47.619 0.00 0.00 0.00 2.52
23 24 0.476338 TGCAGCCCCAAAGTACAAGA 59.524 50.000 0.00 0.00 0.00 3.02
24 25 1.327303 TTGCAGCCCCAAAGTACAAG 58.673 50.000 0.00 0.00 0.00 3.16
25 26 1.617850 CATTGCAGCCCCAAAGTACAA 59.382 47.619 0.00 0.00 0.00 2.41
26 27 1.255882 CATTGCAGCCCCAAAGTACA 58.744 50.000 0.00 0.00 0.00 2.90
27 28 0.532115 CCATTGCAGCCCCAAAGTAC 59.468 55.000 0.00 0.00 0.00 2.73
28 29 1.257055 GCCATTGCAGCCCCAAAGTA 61.257 55.000 0.00 0.00 37.47 2.24
29 30 2.586293 GCCATTGCAGCCCCAAAGT 61.586 57.895 0.00 0.00 37.47 2.66
30 31 2.266689 GCCATTGCAGCCCCAAAG 59.733 61.111 0.00 0.00 37.47 2.77
31 32 3.320830 GGCCATTGCAGCCCCAAA 61.321 61.111 4.10 0.00 45.16 3.28
38 39 1.985447 CTACACAGCGGCCATTGCAG 61.985 60.000 2.24 0.00 40.13 4.41
39 40 2.033294 TACACAGCGGCCATTGCA 59.967 55.556 2.24 0.00 40.13 4.08
40 41 2.764314 CCTACACAGCGGCCATTGC 61.764 63.158 2.24 0.00 0.00 3.56
41 42 1.078497 TCCTACACAGCGGCCATTG 60.078 57.895 2.24 2.13 0.00 2.82
42 43 1.221840 CTCCTACACAGCGGCCATT 59.778 57.895 2.24 0.00 0.00 3.16
43 44 2.735772 CCTCCTACACAGCGGCCAT 61.736 63.158 2.24 0.00 0.00 4.40
44 45 3.390521 CCTCCTACACAGCGGCCA 61.391 66.667 2.24 0.00 0.00 5.36
45 46 2.579684 CTTCCTCCTACACAGCGGCC 62.580 65.000 0.00 0.00 0.00 6.13
46 47 1.153549 CTTCCTCCTACACAGCGGC 60.154 63.158 0.00 0.00 0.00 6.53
47 48 0.895530 TTCTTCCTCCTACACAGCGG 59.104 55.000 0.00 0.00 0.00 5.52
48 49 1.134965 CCTTCTTCCTCCTACACAGCG 60.135 57.143 0.00 0.00 0.00 5.18
49 50 1.208293 CCCTTCTTCCTCCTACACAGC 59.792 57.143 0.00 0.00 0.00 4.40
50 51 1.208293 GCCCTTCTTCCTCCTACACAG 59.792 57.143 0.00 0.00 0.00 3.66
51 52 1.276622 GCCCTTCTTCCTCCTACACA 58.723 55.000 0.00 0.00 0.00 3.72
52 53 0.542333 GGCCCTTCTTCCTCCTACAC 59.458 60.000 0.00 0.00 0.00 2.90
53 54 0.417841 AGGCCCTTCTTCCTCCTACA 59.582 55.000 0.00 0.00 0.00 2.74
54 55 1.210722 CAAGGCCCTTCTTCCTCCTAC 59.789 57.143 0.00 0.00 0.00 3.18
55 56 1.584724 CAAGGCCCTTCTTCCTCCTA 58.415 55.000 0.00 0.00 0.00 2.94
56 57 1.210885 CCAAGGCCCTTCTTCCTCCT 61.211 60.000 0.00 0.00 0.00 3.69
57 58 1.208165 TCCAAGGCCCTTCTTCCTCC 61.208 60.000 0.00 0.00 0.00 4.30
58 59 0.922626 ATCCAAGGCCCTTCTTCCTC 59.077 55.000 0.00 0.00 0.00 3.71
59 60 0.922626 GATCCAAGGCCCTTCTTCCT 59.077 55.000 0.00 0.00 0.00 3.36
60 61 0.106469 GGATCCAAGGCCCTTCTTCC 60.106 60.000 6.95 0.00 0.00 3.46
61 62 0.106469 GGGATCCAAGGCCCTTCTTC 60.106 60.000 15.23 0.00 41.31 2.87
62 63 2.010900 GGGATCCAAGGCCCTTCTT 58.989 57.895 15.23 0.00 41.31 2.52
63 64 3.761182 GGGATCCAAGGCCCTTCT 58.239 61.111 15.23 0.00 41.31 2.85
67 68 0.336392 AAAGAAGGGATCCAAGGCCC 59.664 55.000 15.23 0.00 45.04 5.80
68 69 1.769026 GAAAGAAGGGATCCAAGGCC 58.231 55.000 15.23 0.00 0.00 5.19
69 70 1.340114 ACGAAAGAAGGGATCCAAGGC 60.340 52.381 15.23 0.00 0.00 4.35
70 71 2.359900 CACGAAAGAAGGGATCCAAGG 58.640 52.381 15.23 0.00 0.00 3.61
71 72 2.359900 CCACGAAAGAAGGGATCCAAG 58.640 52.381 15.23 0.00 0.00 3.61
72 73 2.489938 CCACGAAAGAAGGGATCCAA 57.510 50.000 15.23 0.00 0.00 3.53
80 81 3.402628 TCTTCCTTCCCACGAAAGAAG 57.597 47.619 5.29 5.29 43.55 2.85
81 82 3.496160 CCTTCTTCCTTCCCACGAAAGAA 60.496 47.826 0.00 0.00 29.74 2.52
82 83 2.038557 CCTTCTTCCTTCCCACGAAAGA 59.961 50.000 0.00 0.00 0.00 2.52
83 84 2.038557 TCCTTCTTCCTTCCCACGAAAG 59.961 50.000 0.00 0.00 0.00 2.62
84 85 2.051692 TCCTTCTTCCTTCCCACGAAA 58.948 47.619 0.00 0.00 0.00 3.46
85 86 1.724545 TCCTTCTTCCTTCCCACGAA 58.275 50.000 0.00 0.00 0.00 3.85
86 87 1.346722 GTTCCTTCTTCCTTCCCACGA 59.653 52.381 0.00 0.00 0.00 4.35
87 88 1.610886 GGTTCCTTCTTCCTTCCCACG 60.611 57.143 0.00 0.00 0.00 4.94
88 89 1.610886 CGGTTCCTTCTTCCTTCCCAC 60.611 57.143 0.00 0.00 0.00 4.61
89 90 0.690762 CGGTTCCTTCTTCCTTCCCA 59.309 55.000 0.00 0.00 0.00 4.37
90 91 0.691332 ACGGTTCCTTCTTCCTTCCC 59.309 55.000 0.00 0.00 0.00 3.97
91 92 1.610886 CCACGGTTCCTTCTTCCTTCC 60.611 57.143 0.00 0.00 0.00 3.46
92 93 1.071857 ACCACGGTTCCTTCTTCCTTC 59.928 52.381 0.00 0.00 0.00 3.46
93 94 1.137697 ACCACGGTTCCTTCTTCCTT 58.862 50.000 0.00 0.00 0.00 3.36
94 95 0.396811 CACCACGGTTCCTTCTTCCT 59.603 55.000 0.00 0.00 0.00 3.36
95 96 0.605589 CCACCACGGTTCCTTCTTCC 60.606 60.000 0.00 0.00 0.00 3.46
96 97 1.235281 GCCACCACGGTTCCTTCTTC 61.235 60.000 0.00 0.00 36.97 2.87
97 98 1.228154 GCCACCACGGTTCCTTCTT 60.228 57.895 0.00 0.00 36.97 2.52
98 99 1.779061 ATGCCACCACGGTTCCTTCT 61.779 55.000 0.00 0.00 36.97 2.85
99 100 1.303317 ATGCCACCACGGTTCCTTC 60.303 57.895 0.00 0.00 36.97 3.46
100 101 1.603455 CATGCCACCACGGTTCCTT 60.603 57.895 0.00 0.00 36.97 3.36
101 102 2.034066 CATGCCACCACGGTTCCT 59.966 61.111 0.00 0.00 36.97 3.36
102 103 3.061848 CCATGCCACCACGGTTCC 61.062 66.667 0.00 0.00 36.97 3.62
103 104 3.061848 CCCATGCCACCACGGTTC 61.062 66.667 0.00 0.00 36.97 3.62
104 105 4.676951 CCCCATGCCACCACGGTT 62.677 66.667 0.00 0.00 36.97 4.44
131 132 3.470888 CTACCCAGCCCTCCCACG 61.471 72.222 0.00 0.00 0.00 4.94
132 133 2.540842 TACCTACCCAGCCCTCCCAC 62.541 65.000 0.00 0.00 0.00 4.61
133 134 2.258225 TACCTACCCAGCCCTCCCA 61.258 63.158 0.00 0.00 0.00 4.37
134 135 1.765255 GTACCTACCCAGCCCTCCC 60.765 68.421 0.00 0.00 0.00 4.30
135 136 1.002533 TGTACCTACCCAGCCCTCC 59.997 63.158 0.00 0.00 0.00 4.30
136 137 1.687297 GCTGTACCTACCCAGCCCTC 61.687 65.000 0.24 0.00 46.55 4.30
137 138 1.689582 GCTGTACCTACCCAGCCCT 60.690 63.158 0.24 0.00 46.55 5.19
138 139 2.908796 GCTGTACCTACCCAGCCC 59.091 66.667 0.24 0.00 46.55 5.19
141 142 1.522569 GCCAGCTGTACCTACCCAG 59.477 63.158 13.81 0.00 0.00 4.45
142 143 1.993391 GGCCAGCTGTACCTACCCA 60.993 63.158 13.81 0.00 0.00 4.51
143 144 1.993391 TGGCCAGCTGTACCTACCC 60.993 63.158 20.31 7.13 0.00 3.69
144 145 1.221021 GTGGCCAGCTGTACCTACC 59.779 63.158 20.31 9.55 0.00 3.18
145 146 1.153628 CGTGGCCAGCTGTACCTAC 60.154 63.158 20.31 15.63 0.00 3.18
146 147 1.608336 ACGTGGCCAGCTGTACCTA 60.608 57.895 20.31 7.53 0.00 3.08
147 148 2.923035 ACGTGGCCAGCTGTACCT 60.923 61.111 20.31 1.84 0.00 3.08
148 149 2.742372 CACGTGGCCAGCTGTACC 60.742 66.667 5.11 14.26 0.00 3.34
149 150 2.742372 CCACGTGGCCAGCTGTAC 60.742 66.667 24.02 7.87 0.00 2.90
150 151 4.015406 CCCACGTGGCCAGCTGTA 62.015 66.667 29.75 0.00 0.00 2.74
159 160 2.064242 AAAAGTCCTCCCCCACGTGG 62.064 60.000 28.26 28.26 0.00 4.94
160 161 0.605589 GAAAAGTCCTCCCCCACGTG 60.606 60.000 9.08 9.08 0.00 4.49
161 162 0.767060 AGAAAAGTCCTCCCCCACGT 60.767 55.000 0.00 0.00 0.00 4.49
162 163 0.036294 GAGAAAAGTCCTCCCCCACG 60.036 60.000 0.00 0.00 0.00 4.94
163 164 1.279558 GAGAGAAAAGTCCTCCCCCAC 59.720 57.143 0.00 0.00 0.00 4.61
164 165 1.657804 GAGAGAAAAGTCCTCCCCCA 58.342 55.000 0.00 0.00 0.00 4.96
165 166 0.537653 CGAGAGAAAAGTCCTCCCCC 59.462 60.000 0.00 0.00 0.00 5.40
166 167 1.268066 ACGAGAGAAAAGTCCTCCCC 58.732 55.000 0.00 0.00 0.00 4.81
167 168 2.563620 AGAACGAGAGAAAAGTCCTCCC 59.436 50.000 0.00 0.00 0.00 4.30
168 169 3.006003 ACAGAACGAGAGAAAAGTCCTCC 59.994 47.826 0.00 0.00 0.00 4.30
169 170 4.245845 ACAGAACGAGAGAAAAGTCCTC 57.754 45.455 0.00 0.00 0.00 3.71
170 171 4.674281 AACAGAACGAGAGAAAAGTCCT 57.326 40.909 0.00 0.00 0.00 3.85
171 172 4.552961 GCAAACAGAACGAGAGAAAAGTCC 60.553 45.833 0.00 0.00 0.00 3.85
172 173 4.519147 GCAAACAGAACGAGAGAAAAGTC 58.481 43.478 0.00 0.00 0.00 3.01
173 174 3.001330 CGCAAACAGAACGAGAGAAAAGT 59.999 43.478 0.00 0.00 0.00 2.66
174 175 3.535860 CGCAAACAGAACGAGAGAAAAG 58.464 45.455 0.00 0.00 0.00 2.27
175 176 2.286184 GCGCAAACAGAACGAGAGAAAA 60.286 45.455 0.30 0.00 0.00 2.29
176 177 1.260561 GCGCAAACAGAACGAGAGAAA 59.739 47.619 0.30 0.00 0.00 2.52
177 178 0.859232 GCGCAAACAGAACGAGAGAA 59.141 50.000 0.30 0.00 0.00 2.87
178 179 0.249280 TGCGCAAACAGAACGAGAGA 60.249 50.000 8.16 0.00 0.00 3.10
179 180 0.792640 ATGCGCAAACAGAACGAGAG 59.207 50.000 17.11 0.00 0.00 3.20
180 181 2.073117 TATGCGCAAACAGAACGAGA 57.927 45.000 17.11 0.00 0.00 4.04
181 182 2.595188 CGATATGCGCAAACAGAACGAG 60.595 50.000 17.11 0.00 0.00 4.18
182 183 1.323235 CGATATGCGCAAACAGAACGA 59.677 47.619 17.11 0.00 0.00 3.85
183 184 1.718504 CGATATGCGCAAACAGAACG 58.281 50.000 17.11 9.98 0.00 3.95
195 196 2.437343 GCGGCTACTCGCGATATGC 61.437 63.158 10.36 13.86 46.23 3.14
196 197 3.755404 GCGGCTACTCGCGATATG 58.245 61.111 10.36 0.00 46.23 1.78
204 205 2.427740 GCGATCGAGCGGCTACTC 60.428 66.667 25.73 2.43 0.00 2.59
222 223 2.693250 GAAACCAAGCACCAACCCGC 62.693 60.000 0.00 0.00 0.00 6.13
223 224 1.362355 GAAACCAAGCACCAACCCG 59.638 57.895 0.00 0.00 0.00 5.28
224 225 0.759060 AGGAAACCAAGCACCAACCC 60.759 55.000 0.00 0.00 0.00 4.11
225 226 1.119684 AAGGAAACCAAGCACCAACC 58.880 50.000 0.00 0.00 0.00 3.77
226 227 2.979814 AAAGGAAACCAAGCACCAAC 57.020 45.000 0.00 0.00 0.00 3.77
227 228 3.103742 AGAAAAGGAAACCAAGCACCAA 58.896 40.909 0.00 0.00 0.00 3.67
228 229 2.430332 CAGAAAAGGAAACCAAGCACCA 59.570 45.455 0.00 0.00 0.00 4.17
229 230 2.693074 TCAGAAAAGGAAACCAAGCACC 59.307 45.455 0.00 0.00 0.00 5.01
230 231 4.363138 CTTCAGAAAAGGAAACCAAGCAC 58.637 43.478 0.00 0.00 0.00 4.40
231 232 3.181476 GCTTCAGAAAAGGAAACCAAGCA 60.181 43.478 0.00 0.00 35.99 3.91
232 233 3.181476 TGCTTCAGAAAAGGAAACCAAGC 60.181 43.478 0.00 0.00 36.39 4.01
233 234 4.363138 GTGCTTCAGAAAAGGAAACCAAG 58.637 43.478 0.00 0.00 0.00 3.61
234 235 3.181491 CGTGCTTCAGAAAAGGAAACCAA 60.181 43.478 0.00 0.00 0.00 3.67
235 236 2.357637 CGTGCTTCAGAAAAGGAAACCA 59.642 45.455 0.00 0.00 0.00 3.67
236 237 2.287608 CCGTGCTTCAGAAAAGGAAACC 60.288 50.000 0.00 0.00 0.00 3.27
237 238 2.287608 CCCGTGCTTCAGAAAAGGAAAC 60.288 50.000 0.00 0.00 0.00 2.78
238 239 1.953686 CCCGTGCTTCAGAAAAGGAAA 59.046 47.619 0.00 0.00 0.00 3.13
239 240 1.142060 TCCCGTGCTTCAGAAAAGGAA 59.858 47.619 0.00 0.00 0.00 3.36
240 241 0.762418 TCCCGTGCTTCAGAAAAGGA 59.238 50.000 0.00 0.00 0.00 3.36
241 242 0.875059 GTCCCGTGCTTCAGAAAAGG 59.125 55.000 0.00 0.00 0.00 3.11
242 243 0.875059 GGTCCCGTGCTTCAGAAAAG 59.125 55.000 0.00 0.00 0.00 2.27
243 244 0.882927 CGGTCCCGTGCTTCAGAAAA 60.883 55.000 0.00 0.00 34.35 2.29
244 245 1.301401 CGGTCCCGTGCTTCAGAAA 60.301 57.895 0.00 0.00 34.35 2.52
245 246 2.342279 CGGTCCCGTGCTTCAGAA 59.658 61.111 0.00 0.00 34.35 3.02
246 247 4.373116 GCGGTCCCGTGCTTCAGA 62.373 66.667 7.66 0.00 42.09 3.27
265 266 1.581223 AAGCTAAGTACCTGTCCCCC 58.419 55.000 0.00 0.00 0.00 5.40
266 267 3.008704 TGAAAAGCTAAGTACCTGTCCCC 59.991 47.826 0.00 0.00 0.00 4.81
267 268 4.254492 CTGAAAAGCTAAGTACCTGTCCC 58.746 47.826 0.00 0.00 0.00 4.46
268 269 4.254492 CCTGAAAAGCTAAGTACCTGTCC 58.746 47.826 0.00 0.00 0.00 4.02
269 270 3.685272 GCCTGAAAAGCTAAGTACCTGTC 59.315 47.826 0.00 0.00 0.00 3.51
270 271 3.559384 GGCCTGAAAAGCTAAGTACCTGT 60.559 47.826 0.00 0.00 0.00 4.00
271 272 3.010420 GGCCTGAAAAGCTAAGTACCTG 58.990 50.000 0.00 0.00 0.00 4.00
272 273 2.354805 CGGCCTGAAAAGCTAAGTACCT 60.355 50.000 0.00 0.00 0.00 3.08
273 274 2.007608 CGGCCTGAAAAGCTAAGTACC 58.992 52.381 0.00 0.00 0.00 3.34
274 275 2.007608 CCGGCCTGAAAAGCTAAGTAC 58.992 52.381 0.00 0.00 0.00 2.73
275 276 1.677820 GCCGGCCTGAAAAGCTAAGTA 60.678 52.381 18.11 0.00 0.00 2.24
276 277 0.960861 GCCGGCCTGAAAAGCTAAGT 60.961 55.000 18.11 0.00 0.00 2.24
277 278 1.657751 GGCCGGCCTGAAAAGCTAAG 61.658 60.000 38.76 0.00 0.00 2.18
278 279 1.677633 GGCCGGCCTGAAAAGCTAA 60.678 57.895 38.76 0.00 0.00 3.09
279 280 2.045340 GGCCGGCCTGAAAAGCTA 60.045 61.111 38.76 0.00 0.00 3.32
292 293 2.960957 CTAGTGTGATGGAGCGGCCG 62.961 65.000 24.05 24.05 40.66 6.13
293 294 1.227380 CTAGTGTGATGGAGCGGCC 60.227 63.158 0.00 0.00 37.10 6.13
294 295 0.807667 CACTAGTGTGATGGAGCGGC 60.808 60.000 15.06 0.00 46.55 6.53
295 296 0.179100 CCACTAGTGTGATGGAGCGG 60.179 60.000 21.18 0.00 46.55 5.52
296 297 0.179100 CCCACTAGTGTGATGGAGCG 60.179 60.000 21.18 2.82 46.55 5.03
297 298 0.462759 GCCCACTAGTGTGATGGAGC 60.463 60.000 21.18 7.82 46.55 4.70
298 299 0.904649 TGCCCACTAGTGTGATGGAG 59.095 55.000 21.18 4.24 46.55 3.86
299 300 0.904649 CTGCCCACTAGTGTGATGGA 59.095 55.000 21.18 7.41 46.55 3.41
300 301 0.745845 GCTGCCCACTAGTGTGATGG 60.746 60.000 21.18 15.50 46.55 3.51
301 302 0.745845 GGCTGCCCACTAGTGTGATG 60.746 60.000 21.18 9.86 46.55 3.07
302 303 1.604378 GGCTGCCCACTAGTGTGAT 59.396 57.895 21.18 0.00 46.55 3.06
303 304 2.942796 CGGCTGCCCACTAGTGTGA 61.943 63.158 21.18 4.06 46.55 3.58
304 305 2.434884 CGGCTGCCCACTAGTGTG 60.435 66.667 21.18 11.65 43.45 3.82
305 306 3.706373 CCGGCTGCCCACTAGTGT 61.706 66.667 21.18 0.00 0.00 3.55
321 322 4.814294 CACGTCTAGTGGGCGGCC 62.814 72.222 23.42 23.42 46.77 6.13
345 346 8.334632 CGTTCTAAAATTTTGTGAAGGCATTTT 58.665 29.630 13.76 0.00 32.95 1.82
346 347 7.708752 TCGTTCTAAAATTTTGTGAAGGCATTT 59.291 29.630 22.25 0.00 0.00 2.32
347 348 7.206687 TCGTTCTAAAATTTTGTGAAGGCATT 58.793 30.769 22.25 0.00 0.00 3.56
371 372 2.224161 CCCTCCGATCCAAAGTGAGATC 60.224 54.545 0.00 0.00 36.38 2.75
376 377 2.014068 GCTTCCCTCCGATCCAAAGTG 61.014 57.143 0.00 0.00 0.00 3.16
396 397 2.977169 CCACGCCACGAAAAGTAAATTG 59.023 45.455 0.00 0.00 0.00 2.32
404 405 4.454847 TGATTTTATACCACGCCACGAAAA 59.545 37.500 0.00 0.00 0.00 2.29
408 409 2.673862 TGTGATTTTATACCACGCCACG 59.326 45.455 0.00 0.00 33.78 4.94
908 915 1.381872 GGGGGAGAGCAGAGCTACA 60.382 63.158 0.00 0.00 39.88 2.74
937 944 0.392998 CCAATCCCCACTTCACCTCG 60.393 60.000 0.00 0.00 0.00 4.63
985 993 0.309922 CGCATCCTGCAACATCCATC 59.690 55.000 0.00 0.00 45.36 3.51
1028 1047 4.899239 GTATGCCGCTCAGCCGCT 62.899 66.667 11.43 0.02 34.21 5.52
1059 1078 1.299648 CGCTGATTTGGACCTGGGA 59.700 57.895 0.00 0.00 0.00 4.37
1098 1117 0.679002 TGAGGGCATTCAGAAGCTGC 60.679 55.000 0.63 0.63 35.16 5.25
1116 1135 1.750778 ACAACAGAGCCAACAAACCTG 59.249 47.619 0.00 0.00 0.00 4.00
1191 1210 5.481824 AGTCAATACACTGATGACCTTCTCA 59.518 40.000 1.81 0.00 43.46 3.27
1199 1218 5.745312 AGTGGAAGTCAATACACTGATGA 57.255 39.130 0.00 0.00 42.14 2.92
1211 1232 2.701951 ACCGGACTAAAAGTGGAAGTCA 59.298 45.455 9.46 0.00 41.15 3.41
1250 1271 5.535753 TCTTCACTGACTTGAGAACATGA 57.464 39.130 0.00 0.00 0.00 3.07
1271 1292 8.834465 AGCTTGTGTGTCATCTATCAAATTATC 58.166 33.333 0.00 0.00 0.00 1.75
1299 1321 9.429359 GAAGAGCAACATATATATAGCTTGTGT 57.571 33.333 14.20 0.00 31.61 3.72
1300 1322 9.650539 AGAAGAGCAACATATATATAGCTTGTG 57.349 33.333 14.20 0.00 31.61 3.33
1341 1364 5.861787 GGTATGTAGCCAAATTTGTCAACAC 59.138 40.000 16.73 7.77 0.00 3.32
1342 1365 5.335269 CGGTATGTAGCCAAATTTGTCAACA 60.335 40.000 16.73 15.73 0.00 3.33
1343 1366 5.092781 CGGTATGTAGCCAAATTTGTCAAC 58.907 41.667 16.73 11.17 0.00 3.18
1344 1367 5.004448 TCGGTATGTAGCCAAATTTGTCAA 58.996 37.500 16.73 0.00 0.00 3.18
1345 1368 4.580868 TCGGTATGTAGCCAAATTTGTCA 58.419 39.130 16.73 10.30 0.00 3.58
1346 1369 5.554822 TTCGGTATGTAGCCAAATTTGTC 57.445 39.130 16.73 4.08 0.00 3.18
1347 1370 5.968528 TTTCGGTATGTAGCCAAATTTGT 57.031 34.783 16.73 2.12 0.00 2.83
1348 1371 5.977129 GGATTTCGGTATGTAGCCAAATTTG 59.023 40.000 11.40 11.40 0.00 2.32
1349 1372 5.654650 TGGATTTCGGTATGTAGCCAAATTT 59.345 36.000 0.00 0.00 0.00 1.82
1350 1373 5.067283 GTGGATTTCGGTATGTAGCCAAATT 59.933 40.000 0.00 0.00 0.00 1.82
1351 1374 4.578928 GTGGATTTCGGTATGTAGCCAAAT 59.421 41.667 0.00 0.00 0.00 2.32
1352 1375 3.942748 GTGGATTTCGGTATGTAGCCAAA 59.057 43.478 0.00 0.00 0.00 3.28
1353 1376 3.199071 AGTGGATTTCGGTATGTAGCCAA 59.801 43.478 0.00 0.00 0.00 4.52
1354 1377 2.769663 AGTGGATTTCGGTATGTAGCCA 59.230 45.455 0.00 0.00 0.00 4.75
1355 1378 3.131396 CAGTGGATTTCGGTATGTAGCC 58.869 50.000 0.00 0.00 0.00 3.93
1356 1379 2.544267 GCAGTGGATTTCGGTATGTAGC 59.456 50.000 0.00 0.00 0.00 3.58
1357 1380 3.792401 TGCAGTGGATTTCGGTATGTAG 58.208 45.455 0.00 0.00 0.00 2.74
1358 1381 3.897141 TGCAGTGGATTTCGGTATGTA 57.103 42.857 0.00 0.00 0.00 2.29
1359 1382 2.779755 TGCAGTGGATTTCGGTATGT 57.220 45.000 0.00 0.00 0.00 2.29
1360 1383 3.627123 TGAATGCAGTGGATTTCGGTATG 59.373 43.478 11.49 0.00 0.00 2.39
1361 1384 3.884895 TGAATGCAGTGGATTTCGGTAT 58.115 40.909 11.49 0.00 0.00 2.73
1362 1385 3.342377 TGAATGCAGTGGATTTCGGTA 57.658 42.857 11.49 0.00 0.00 4.02
1363 1386 2.198827 TGAATGCAGTGGATTTCGGT 57.801 45.000 11.49 0.00 0.00 4.69
1364 1387 2.489329 AGTTGAATGCAGTGGATTTCGG 59.511 45.455 11.49 0.00 0.00 4.30
1365 1388 3.837213 AGTTGAATGCAGTGGATTTCG 57.163 42.857 11.49 0.00 0.00 3.46
1366 1389 4.151157 GCAAAGTTGAATGCAGTGGATTTC 59.849 41.667 11.49 5.73 42.12 2.17
1367 1390 4.060205 GCAAAGTTGAATGCAGTGGATTT 58.940 39.130 11.49 0.00 42.12 2.17
1368 1391 3.322828 AGCAAAGTTGAATGCAGTGGATT 59.677 39.130 9.92 9.92 44.95 3.01
1369 1392 2.895404 AGCAAAGTTGAATGCAGTGGAT 59.105 40.909 0.00 0.00 44.95 3.41
1370 1393 2.309613 AGCAAAGTTGAATGCAGTGGA 58.690 42.857 0.00 0.00 44.95 4.02
1371 1394 2.806608 AGCAAAGTTGAATGCAGTGG 57.193 45.000 0.00 0.00 44.95 4.00
1372 1395 4.801891 ACATAGCAAAGTTGAATGCAGTG 58.198 39.130 0.00 2.12 44.95 3.66
1373 1396 5.707298 ACTACATAGCAAAGTTGAATGCAGT 59.293 36.000 0.00 0.00 44.95 4.40
1374 1397 6.187125 ACTACATAGCAAAGTTGAATGCAG 57.813 37.500 0.00 1.38 44.95 4.41
1375 1398 6.878923 AGTACTACATAGCAAAGTTGAATGCA 59.121 34.615 0.00 0.00 44.95 3.96
1376 1399 7.308782 AGTACTACATAGCAAAGTTGAATGC 57.691 36.000 0.00 0.00 42.87 3.56
1377 1400 8.177663 CCAAGTACTACATAGCAAAGTTGAATG 58.822 37.037 0.00 0.92 32.59 2.67
1378 1401 7.883311 ACCAAGTACTACATAGCAAAGTTGAAT 59.117 33.333 0.00 0.00 0.00 2.57
1379 1402 7.172532 CACCAAGTACTACATAGCAAAGTTGAA 59.827 37.037 0.00 0.00 0.00 2.69
1380 1403 6.649141 CACCAAGTACTACATAGCAAAGTTGA 59.351 38.462 0.00 0.00 0.00 3.18
1381 1404 6.620733 GCACCAAGTACTACATAGCAAAGTTG 60.621 42.308 0.00 0.00 0.00 3.16
1382 1405 5.411669 GCACCAAGTACTACATAGCAAAGTT 59.588 40.000 0.00 0.00 0.00 2.66
1383 1406 4.935808 GCACCAAGTACTACATAGCAAAGT 59.064 41.667 0.00 0.00 0.00 2.66
1384 1407 4.332819 GGCACCAAGTACTACATAGCAAAG 59.667 45.833 0.00 0.00 0.00 2.77
1385 1408 4.258543 GGCACCAAGTACTACATAGCAAA 58.741 43.478 0.00 0.00 0.00 3.68
1386 1409 3.262151 TGGCACCAAGTACTACATAGCAA 59.738 43.478 0.00 0.00 0.00 3.91
1387 1410 2.835156 TGGCACCAAGTACTACATAGCA 59.165 45.455 0.00 0.00 0.00 3.49
1388 1411 3.195661 GTGGCACCAAGTACTACATAGC 58.804 50.000 6.29 0.00 0.00 2.97
1389 1412 3.431766 GGGTGGCACCAAGTACTACATAG 60.432 52.174 35.69 0.00 41.02 2.23
1390 1413 2.502538 GGGTGGCACCAAGTACTACATA 59.497 50.000 35.69 0.00 41.02 2.29
1391 1414 1.280998 GGGTGGCACCAAGTACTACAT 59.719 52.381 35.69 0.00 41.02 2.29
1392 1415 0.688487 GGGTGGCACCAAGTACTACA 59.312 55.000 35.69 0.00 41.02 2.74
1393 1416 0.390735 CGGGTGGCACCAAGTACTAC 60.391 60.000 35.69 16.12 41.02 2.73
1394 1417 0.832983 ACGGGTGGCACCAAGTACTA 60.833 55.000 35.69 0.00 41.02 1.82
1395 1418 2.144738 ACGGGTGGCACCAAGTACT 61.145 57.895 35.69 12.28 41.02 2.73
1396 1419 1.964373 CACGGGTGGCACCAAGTAC 60.964 63.158 35.69 18.28 41.02 2.73
1397 1420 2.428187 CACGGGTGGCACCAAGTA 59.572 61.111 35.69 0.00 41.02 2.24
1398 1421 3.804329 ACACGGGTGGCACCAAGT 61.804 61.111 35.69 29.90 41.02 3.16
1399 1422 3.286751 CACACGGGTGGCACCAAG 61.287 66.667 35.69 29.27 41.02 3.61
1411 1434 1.008538 GGGCAAACTGAAGCACACG 60.009 57.895 0.00 0.00 33.42 4.49
1432 1455 4.654091 ATCACAAAACCTTCACACTTGG 57.346 40.909 0.00 0.00 0.00 3.61
1456 1479 4.783621 ACACCCTGCGCGCATCAT 62.784 61.111 36.48 19.72 0.00 2.45
1491 1514 4.588899 TCCCTGTTTCACAATAGACATGG 58.411 43.478 0.00 0.00 31.55 3.66
1562 1585 3.461773 GCCTGGACTAGCTCGCCA 61.462 66.667 0.00 0.00 0.00 5.69
1692 1715 9.498307 ACTGAAAAGTTCTAAACAAAACATACG 57.502 29.630 0.00 0.00 0.00 3.06
1704 1727 6.038271 GGAAGTGCTGAACTGAAAAGTTCTAA 59.962 38.462 16.99 3.29 45.98 2.10
1742 1765 4.271049 TGCGAATAATAGCTCTTGCACTTC 59.729 41.667 0.00 0.00 42.74 3.01
1818 1841 4.910458 AACAAGAGCTATGGGTACTGTT 57.090 40.909 4.21 2.72 0.00 3.16
1830 1853 3.149981 GGAGGCTAAACAAACAAGAGCT 58.850 45.455 0.00 0.00 33.57 4.09
1834 1857 4.278170 TCATGTGGAGGCTAAACAAACAAG 59.722 41.667 5.90 0.00 0.00 3.16
1837 1860 4.846779 TTCATGTGGAGGCTAAACAAAC 57.153 40.909 5.90 0.00 0.00 2.93
1888 1918 4.738541 GCCCTGAATATCTGCAAATGGTTG 60.739 45.833 0.00 0.00 37.83 3.77
1910 1942 0.528249 CCACAAAGTGCACAGTTGGC 60.528 55.000 27.18 0.00 31.34 4.52
1985 2017 4.711399 CCAATTGCTCTGGAGTATCATCA 58.289 43.478 0.00 0.00 35.85 3.07
2071 2103 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2072 2104 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2073 2105 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2074 2106 4.378459 GCTTGAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
2075 2107 4.762251 AGCTTGAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
2076 2108 4.985538 AGCTTGAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
2077 2109 5.712152 AAGCTTGAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
2078 2110 7.440523 ACTAAGCTTGAGACACTTATTTTGG 57.559 36.000 9.86 0.00 0.00 3.28
2079 2111 8.988934 TGTACTAAGCTTGAGACACTTATTTTG 58.011 33.333 9.86 0.00 0.00 2.44
2080 2112 9.555727 TTGTACTAAGCTTGAGACACTTATTTT 57.444 29.630 9.86 0.00 0.00 1.82
2081 2113 9.726438 ATTGTACTAAGCTTGAGACACTTATTT 57.274 29.630 9.86 0.00 0.00 1.40
2084 2116 9.021807 ACTATTGTACTAAGCTTGAGACACTTA 57.978 33.333 9.86 4.28 0.00 2.24
2085 2117 7.897864 ACTATTGTACTAAGCTTGAGACACTT 58.102 34.615 9.86 3.40 0.00 3.16
2086 2118 7.469537 ACTATTGTACTAAGCTTGAGACACT 57.530 36.000 9.86 6.85 0.00 3.55
2087 2119 8.242053 TGTACTATTGTACTAAGCTTGAGACAC 58.758 37.037 9.86 7.18 46.70 3.67
2088 2120 8.344446 TGTACTATTGTACTAAGCTTGAGACA 57.656 34.615 9.86 7.12 46.70 3.41
2089 2121 9.635520 TTTGTACTATTGTACTAAGCTTGAGAC 57.364 33.333 9.86 4.39 46.70 3.36
2090 2122 9.856488 CTTTGTACTATTGTACTAAGCTTGAGA 57.144 33.333 21.09 0.00 46.60 3.27
2098 2130 9.903682 GTGTCTCACTTTGTACTATTGTACTAA 57.096 33.333 16.61 14.19 46.70 2.24
2099 2131 9.293404 AGTGTCTCACTTTGTACTATTGTACTA 57.707 33.333 16.61 8.02 42.59 1.82
2100 2132 8.179509 AGTGTCTCACTTTGTACTATTGTACT 57.820 34.615 16.61 0.00 42.59 2.73
2116 2148 3.435671 CCGTCCCAAAATAAGTGTCTCAC 59.564 47.826 0.00 0.00 34.10 3.51
2117 2149 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2118 2150 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2119 2151 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2120 2152 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2121 2153 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2122 2154 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2123 2155 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2124 2156 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2125 2157 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2126 2158 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2127 2159 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2128 2160 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2129 2161 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
2130 2162 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
2131 2163 0.396695 GATGTACTCCCTCCGTCCCA 60.397 60.000 0.00 0.00 0.00 4.37
2132 2164 0.396695 TGATGTACTCCCTCCGTCCC 60.397 60.000 0.00 0.00 0.00 4.46
2133 2165 1.705873 ATGATGTACTCCCTCCGTCC 58.294 55.000 0.00 0.00 0.00 4.79
2134 2166 2.431057 ACAATGATGTACTCCCTCCGTC 59.569 50.000 0.00 0.00 38.24 4.79
2135 2167 2.168521 CACAATGATGTACTCCCTCCGT 59.831 50.000 0.00 0.00 37.82 4.69
2136 2168 2.168521 ACACAATGATGTACTCCCTCCG 59.831 50.000 0.00 0.00 37.82 4.63
2137 2169 3.914426 ACACAATGATGTACTCCCTCC 57.086 47.619 0.00 0.00 37.82 4.30
2138 2170 5.992217 GGATAACACAATGATGTACTCCCTC 59.008 44.000 0.00 0.00 37.82 4.30
2139 2171 5.453339 CGGATAACACAATGATGTACTCCCT 60.453 44.000 0.00 0.00 37.82 4.20
2140 2172 4.750098 CGGATAACACAATGATGTACTCCC 59.250 45.833 0.00 0.00 37.82 4.30
2141 2173 4.211374 GCGGATAACACAATGATGTACTCC 59.789 45.833 0.00 0.00 37.82 3.85
2142 2174 4.808895 TGCGGATAACACAATGATGTACTC 59.191 41.667 0.00 0.00 37.82 2.59
2143 2175 4.765273 TGCGGATAACACAATGATGTACT 58.235 39.130 0.00 0.00 37.82 2.73
2144 2176 5.478233 TTGCGGATAACACAATGATGTAC 57.522 39.130 0.00 0.00 37.82 2.90
2145 2177 6.542005 AGAATTGCGGATAACACAATGATGTA 59.458 34.615 0.00 0.00 37.82 2.29
2150 2182 5.682862 GCTAAGAATTGCGGATAACACAATG 59.317 40.000 0.00 0.00 34.38 2.82
2161 2193 0.810648 TTGGCAGCTAAGAATTGCGG 59.189 50.000 0.00 0.00 38.69 5.69
2163 2195 1.821136 AGGTTGGCAGCTAAGAATTGC 59.179 47.619 0.24 0.00 37.11 3.56
2304 2365 2.493035 CACCATTAGGCGTATGCATCA 58.507 47.619 0.19 0.00 45.35 3.07
2405 2475 4.560128 TCACTCAGTCAGACAAACATAGC 58.440 43.478 2.66 0.00 0.00 2.97
2407 2477 6.345298 TGTTTCACTCAGTCAGACAAACATA 58.655 36.000 2.66 0.00 34.72 2.29
2430 2500 4.080919 TGGACCAGATTATCAGACAGGTTG 60.081 45.833 0.00 0.00 0.00 3.77
2457 2527 3.665745 AGGTGGACGTTACGTTATGTT 57.334 42.857 12.82 0.00 41.37 2.71
2458 2528 3.319755 CAAGGTGGACGTTACGTTATGT 58.680 45.455 12.82 0.00 41.37 2.29
2459 2529 2.093152 GCAAGGTGGACGTTACGTTATG 59.907 50.000 12.82 6.52 41.37 1.90
2460 2530 2.288948 TGCAAGGTGGACGTTACGTTAT 60.289 45.455 12.82 0.00 41.37 1.89
2461 2531 1.068281 TGCAAGGTGGACGTTACGTTA 59.932 47.619 12.82 1.47 41.37 3.18
2465 2535 1.589803 AAGTGCAAGGTGGACGTTAC 58.410 50.000 0.00 0.00 43.86 2.50
2472 2542 0.030638 CGGAACAAAGTGCAAGGTGG 59.969 55.000 0.00 0.00 0.00 4.61
2552 2623 1.205460 AGGGCCGGTTAGTGGATTGT 61.205 55.000 1.90 0.00 0.00 2.71
2567 2638 1.598130 GATGTGGGTATGCGAGGGC 60.598 63.158 0.00 0.00 40.52 5.19
2578 2649 3.423539 TGAACAAAGGAGAGATGTGGG 57.576 47.619 0.00 0.00 0.00 4.61
2580 2651 6.564709 TCATTTGAACAAAGGAGAGATGTG 57.435 37.500 9.93 0.00 36.36 3.21
2661 2734 2.178106 TCCCCTTCTCTATCCCTCTCAC 59.822 54.545 0.00 0.00 0.00 3.51
2775 2848 0.830444 TCTGCGATAGGGGCGGTAAT 60.830 55.000 0.00 0.00 37.99 1.89
2828 2901 8.315391 TCATGCTAAAGATGCAGTATATGTTC 57.685 34.615 0.00 0.00 44.04 3.18
2865 2969 3.055094 TGAAATCTTCCACTGGGCTAGTC 60.055 47.826 0.00 0.00 37.60 2.59
2871 2975 3.490348 ACAACTGAAATCTTCCACTGGG 58.510 45.455 0.00 0.00 0.00 4.45
2906 3011 8.370493 AGAAGAATATCGGATGTGTTTATGTG 57.630 34.615 0.00 0.00 0.00 3.21
2957 3063 3.031013 ACTTGAAAGTTTGACCCAAGGG 58.969 45.455 15.36 2.91 38.70 3.95
2974 3080 9.730420 AGTTACAGTTATGCTAAACAAAACTTG 57.270 29.630 4.86 0.00 30.37 3.16
2989 3095 9.167311 GATCCATCAAGTTGAAGTTACAGTTAT 57.833 33.333 10.14 0.00 0.00 1.89
2990 3096 7.606456 GGATCCATCAAGTTGAAGTTACAGTTA 59.394 37.037 10.14 0.00 0.00 2.24
2991 3097 6.431234 GGATCCATCAAGTTGAAGTTACAGTT 59.569 38.462 10.14 0.00 0.00 3.16
2992 3098 5.940470 GGATCCATCAAGTTGAAGTTACAGT 59.060 40.000 10.14 0.00 0.00 3.55
2993 3099 6.176183 AGGATCCATCAAGTTGAAGTTACAG 58.824 40.000 15.82 0.00 0.00 2.74
3101 3208 3.635331 CCAAAGATATGGAATTGCGCAG 58.365 45.455 11.31 0.00 43.54 5.18
3102 3209 2.223782 GCCAAAGATATGGAATTGCGCA 60.224 45.455 5.66 5.66 43.54 6.09
3103 3210 2.035066 AGCCAAAGATATGGAATTGCGC 59.965 45.455 0.00 0.00 43.54 6.09
3104 3211 3.067180 ACAGCCAAAGATATGGAATTGCG 59.933 43.478 0.00 0.00 43.54 4.85
3105 3212 4.365723 CACAGCCAAAGATATGGAATTGC 58.634 43.478 0.00 0.00 43.54 3.56
3106 3213 4.142116 TGCACAGCCAAAGATATGGAATTG 60.142 41.667 0.00 0.00 43.54 2.32
3107 3214 4.025360 TGCACAGCCAAAGATATGGAATT 58.975 39.130 0.00 0.00 43.54 2.17
3108 3215 3.634504 TGCACAGCCAAAGATATGGAAT 58.365 40.909 0.00 0.00 43.54 3.01
3109 3216 3.084536 TGCACAGCCAAAGATATGGAA 57.915 42.857 0.00 0.00 43.54 3.53
3110 3217 2.804986 TGCACAGCCAAAGATATGGA 57.195 45.000 0.00 0.00 43.54 3.41
3111 3218 4.365723 GAATTGCACAGCCAAAGATATGG 58.634 43.478 0.00 0.00 43.70 2.74
3112 3219 4.142116 TGGAATTGCACAGCCAAAGATATG 60.142 41.667 0.00 0.00 0.00 1.78
3113 3220 4.025360 TGGAATTGCACAGCCAAAGATAT 58.975 39.130 0.00 0.00 0.00 1.63
3114 3221 3.429492 TGGAATTGCACAGCCAAAGATA 58.571 40.909 0.00 0.00 0.00 1.98
3115 3222 2.250031 TGGAATTGCACAGCCAAAGAT 58.750 42.857 0.00 0.00 0.00 2.40
3116 3223 1.702182 TGGAATTGCACAGCCAAAGA 58.298 45.000 0.00 0.00 0.00 2.52
3117 3224 2.754946 ATGGAATTGCACAGCCAAAG 57.245 45.000 0.12 0.00 33.51 2.77
3118 3225 4.025360 AGATATGGAATTGCACAGCCAAA 58.975 39.130 0.12 0.00 33.51 3.28
3119 3226 3.634504 AGATATGGAATTGCACAGCCAA 58.365 40.909 0.12 0.00 33.51 4.52
3120 3227 3.301794 AGATATGGAATTGCACAGCCA 57.698 42.857 0.12 3.37 34.45 4.75
3121 3228 4.365723 CAAAGATATGGAATTGCACAGCC 58.634 43.478 0.12 0.00 0.00 4.85
3122 3229 4.365723 CCAAAGATATGGAATTGCACAGC 58.634 43.478 0.12 0.00 43.54 4.40
3123 3230 4.098960 AGCCAAAGATATGGAATTGCACAG 59.901 41.667 0.12 0.00 43.54 3.66
3124 3231 4.025360 AGCCAAAGATATGGAATTGCACA 58.975 39.130 0.12 0.00 43.54 4.57
3125 3232 4.365723 CAGCCAAAGATATGGAATTGCAC 58.634 43.478 0.12 0.00 43.54 4.57
3254 3399 3.602483 AGGCAATGCAAAAAGGCTAATG 58.398 40.909 7.79 0.00 34.91 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.