Multiple sequence alignment - TraesCS1D01G424700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G424700 chr1D 100.000 7556 0 0 1 7556 478934077 478926522 0.000000e+00 13954.0
1 TraesCS1D01G424700 chr1D 77.169 968 146 57 1911 2826 478913872 478912928 1.890000e-135 494.0
2 TraesCS1D01G424700 chr1D 85.570 298 32 8 1402 1695 478914306 478914016 1.230000e-77 302.0
3 TraesCS1D01G424700 chr1D 85.281 231 23 8 4942 5166 478910779 478910554 2.120000e-55 228.0
4 TraesCS1D01G424700 chr1D 81.226 261 26 10 5709 5946 478910333 478910073 1.000000e-43 189.0
5 TraesCS1D01G424700 chr1D 88.750 80 7 1 1746 1825 155696767 155696844 6.240000e-16 97.1
6 TraesCS1D01G424700 chr1B 93.589 3806 163 31 3217 6972 667015780 667012006 0.000000e+00 5602.0
7 TraesCS1D01G424700 chr1B 91.289 1699 82 24 18 1670 667018875 667017197 0.000000e+00 2257.0
8 TraesCS1D01G424700 chr1B 95.587 1337 53 4 1887 3219 667017198 667015864 0.000000e+00 2137.0
9 TraesCS1D01G424700 chr1B 77.708 794 104 44 3553 4323 666864588 666863845 1.170000e-112 418.0
10 TraesCS1D01G424700 chr1B 85.127 316 30 11 1402 1707 666871219 666870911 2.650000e-79 307.0
11 TraesCS1D01G424700 chr1B 88.017 242 21 5 6962 7198 667012044 667011806 5.770000e-71 279.0
12 TraesCS1D01G424700 chr1B 81.139 281 30 16 1917 2178 666870777 666870501 3.570000e-48 204.0
13 TraesCS1D01G424700 chr1A 96.884 3209 83 12 2037 5235 575155905 575152704 0.000000e+00 5356.0
14 TraesCS1D01G424700 chr1A 89.739 2066 128 33 17 2041 575176562 575174540 0.000000e+00 2564.0
15 TraesCS1D01G424700 chr1A 91.728 1088 49 18 5993 7049 575151860 575150783 0.000000e+00 1472.0
16 TraesCS1D01G424700 chr1A 96.582 673 21 2 5234 5905 575152534 575151863 0.000000e+00 1114.0
17 TraesCS1D01G424700 chr1A 77.282 964 149 53 1917 2830 575124230 575123287 3.150000e-138 503.0
18 TraesCS1D01G424700 chr1A 77.298 903 123 52 3553 4426 575122616 575121767 2.490000e-124 457.0
19 TraesCS1D01G424700 chr1A 93.103 203 9 2 7047 7247 575150472 575150273 7.420000e-75 292.0
20 TraesCS1D01G424700 chr1A 84.052 232 25 8 4942 5166 575121167 575120941 5.940000e-51 213.0
21 TraesCS1D01G424700 chr1A 81.992 261 24 10 5709 5946 575120722 575120462 4.620000e-47 200.0
22 TraesCS1D01G424700 chr1A 87.129 101 10 2 1730 1829 372629781 372629879 2.230000e-20 111.0
23 TraesCS1D01G424700 chr2D 88.254 315 23 12 7246 7556 59634005 59634309 1.550000e-96 364.0
24 TraesCS1D01G424700 chr2A 89.796 294 17 10 7269 7554 20959424 20959712 1.550000e-96 364.0
25 TraesCS1D01G424700 chr2A 85.670 321 23 14 7250 7556 12980159 12979848 4.400000e-82 316.0
26 TraesCS1D01G424700 chr2A 87.129 101 10 2 1730 1829 13024436 13024338 2.230000e-20 111.0
27 TraesCS1D01G424700 chr4D 88.141 312 17 11 7249 7556 359744190 359744485 3.350000e-93 353.0
28 TraesCS1D01G424700 chr4D 87.879 99 9 2 1732 1829 407409797 407409701 6.200000e-21 113.0
29 TraesCS1D01G424700 chr4D 87.000 100 11 1 1730 1829 104194095 104193998 2.230000e-20 111.0
30 TraesCS1D01G424700 chr4D 89.706 68 5 2 1764 1831 434162679 434162744 1.350000e-12 86.1
31 TraesCS1D01G424700 chr7A 87.302 315 25 11 7250 7556 572137946 572137639 5.610000e-91 346.0
32 TraesCS1D01G424700 chr7A 86.687 323 19 17 7250 7556 171260430 171260744 3.380000e-88 337.0
33 TraesCS1D01G424700 chr7A 93.023 172 12 0 6711 6882 6342075 6342246 1.260000e-62 252.0
34 TraesCS1D01G424700 chr3A 86.859 312 25 12 7251 7556 608388246 608388547 1.210000e-87 335.0
35 TraesCS1D01G424700 chr3A 85.209 311 37 8 7250 7556 374358538 374358843 2.050000e-80 311.0
36 TraesCS1D01G424700 chr3A 87.129 101 10 2 1730 1829 523845208 523845110 2.230000e-20 111.0
37 TraesCS1D01G424700 chr3A 87.000 100 10 1 1730 1829 70933328 70933424 8.020000e-20 110.0
38 TraesCS1D01G424700 chr3A 94.595 37 2 0 5601 5637 171035548 171035584 2.940000e-04 58.4
39 TraesCS1D01G424700 chr4A 86.349 315 30 9 7250 7556 620262739 620263048 1.570000e-86 331.0
40 TraesCS1D01G424700 chr4A 91.477 176 13 2 6711 6884 655516804 655516979 2.720000e-59 241.0
41 TraesCS1D01G424700 chr5B 93.413 167 11 0 6711 6877 695754797 695754631 1.630000e-61 248.0
42 TraesCS1D01G424700 chr4B 93.413 167 11 0 6711 6877 546575761 546575595 1.630000e-61 248.0
43 TraesCS1D01G424700 chr4B 93.413 167 11 0 6711 6877 546598128 546597962 1.630000e-61 248.0
44 TraesCS1D01G424700 chr2B 92.398 171 13 0 6711 6881 66770935 66771105 2.110000e-60 244.0
45 TraesCS1D01G424700 chr2B 92.398 171 13 0 6711 6881 748070667 748070497 2.110000e-60 244.0
46 TraesCS1D01G424700 chr2B 85.149 101 15 0 18 118 6375072 6374972 3.730000e-18 104.0
47 TraesCS1D01G424700 chr7D 88.000 100 9 2 1731 1829 309545740 309545643 1.720000e-21 115.0
48 TraesCS1D01G424700 chr7D 86.111 108 11 3 1724 1829 446242879 446242984 6.200000e-21 113.0
49 TraesCS1D01G424700 chr7D 86.139 101 11 2 1730 1829 446242491 446242589 1.040000e-18 106.0
50 TraesCS1D01G424700 chr7D 84.466 103 11 3 1730 1829 520507947 520508047 6.240000e-16 97.1
51 TraesCS1D01G424700 chr6D 87.129 101 10 2 1730 1829 229355804 229355706 2.230000e-20 111.0
52 TraesCS1D01G424700 chr3D 87.500 96 9 2 1735 1829 545048571 545048664 2.880000e-19 108.0
53 TraesCS1D01G424700 chr5D 85.542 83 9 2 1748 1829 173670671 173670591 4.860000e-12 84.2
54 TraesCS1D01G424700 chrUn 89.231 65 6 1 1766 1829 101995667 101995603 6.280000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G424700 chr1D 478926522 478934077 7555 True 13954.00 13954 100.00000 1 7556 1 chr1D.!!$R1 7555
1 TraesCS1D01G424700 chr1D 478910073 478914306 4233 True 303.25 494 82.31150 1402 5946 4 chr1D.!!$R2 4544
2 TraesCS1D01G424700 chr1B 667011806 667018875 7069 True 2568.75 5602 92.12050 18 7198 4 chr1B.!!$R3 7180
3 TraesCS1D01G424700 chr1B 666863845 666864588 743 True 418.00 418 77.70800 3553 4323 1 chr1B.!!$R1 770
4 TraesCS1D01G424700 chr1B 666870501 666871219 718 True 255.50 307 83.13300 1402 2178 2 chr1B.!!$R2 776
5 TraesCS1D01G424700 chr1A 575174540 575176562 2022 True 2564.00 2564 89.73900 17 2041 1 chr1A.!!$R1 2024
6 TraesCS1D01G424700 chr1A 575150273 575155905 5632 True 2058.50 5356 94.57425 2037 7247 4 chr1A.!!$R3 5210
7 TraesCS1D01G424700 chr1A 575120462 575124230 3768 True 343.25 503 80.15600 1917 5946 4 chr1A.!!$R2 4029

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
284 287 0.739462 CAGAACGATAGCCACGCCAA 60.739 55.000 0.00 0.00 42.67 4.52 F
1007 1040 0.178987 TAGGAGAGAGCGATGGGGAC 60.179 60.000 0.00 0.00 0.00 4.46 F
1227 1261 0.318360 GACGATGTCGACACACCACA 60.318 55.000 22.71 0.00 43.02 4.17 F
1229 1263 0.318699 CGATGTCGACACACCACACT 60.319 55.000 22.71 1.23 43.02 3.55 F
2737 2878 0.521735 CTTTCTTTGCAGTACCCGGC 59.478 55.000 0.00 0.00 0.00 6.13 F
2868 3015 4.098894 TGAACCTTCCTATTACCGGAACT 58.901 43.478 9.46 0.00 35.70 3.01 F
4511 5086 1.004927 GTATGTGCCGCAATTCTCGTC 60.005 52.381 0.00 0.00 0.00 4.20 F
5851 6724 2.747989 GTTCGGAAACTCCTGAATTCCC 59.252 50.000 2.27 0.00 39.56 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1529 1588 1.153823 CCCGAACCACTGCTCGTAG 60.154 63.158 0.00 0.0 33.17 3.51 R
2286 2404 3.089284 CAAAGGAACCAATACCACCCTC 58.911 50.000 0.00 0.0 0.00 4.30 R
2964 3161 7.658525 ACACAGTCTCTCAAGATGATAGAAT 57.341 36.000 0.00 0.0 32.49 2.40 R
3233 3516 7.545615 GTGGTCCAGAAATTTTATTAGGCTTTG 59.454 37.037 0.00 0.0 0.00 2.77 R
4511 5086 3.990092 TGCATATCCTACTAGCCAAACG 58.010 45.455 0.00 0.0 0.00 3.60 R
4758 5343 8.267620 TGTGACATCCTCTAATTGTGTTATTG 57.732 34.615 0.00 0.0 0.00 1.90 R
5947 6832 1.098712 GGCGTTTTGTGGGAGTGTCA 61.099 55.000 0.00 0.0 0.00 3.58 R
7338 8581 0.035458 AAACTGAAGGGAGCGTCCAG 59.965 55.000 6.41 0.0 38.64 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 119 3.391665 CTAGCCCTGCCCTCCAACG 62.392 68.421 0.00 0.00 0.00 4.10
141 143 1.137086 CCTATCTTGTCACCACCTCCG 59.863 57.143 0.00 0.00 0.00 4.63
157 159 2.742372 CGGGCCCTGTCAAACTCG 60.742 66.667 22.43 0.00 0.00 4.18
223 226 2.174107 CACGCATGAGCCACAACG 59.826 61.111 0.00 0.00 37.52 4.10
252 255 3.758172 GTGCCCGACACCATTGTT 58.242 55.556 0.00 0.00 44.02 2.83
260 263 1.329292 CGACACCATTGTTTCACGTGT 59.671 47.619 16.51 0.00 40.24 4.49
261 264 2.223157 CGACACCATTGTTTCACGTGTT 60.223 45.455 16.51 0.00 37.77 3.32
284 287 0.739462 CAGAACGATAGCCACGCCAA 60.739 55.000 0.00 0.00 42.67 4.52
303 306 2.675075 CCGCCGGTGACCCAAATT 60.675 61.111 18.79 0.00 0.00 1.82
363 367 2.122167 CGGACGGCTTCCTCTAGCT 61.122 63.158 8.53 0.00 43.25 3.32
443 448 7.954788 TTGTGCCACAAATACTTTAAATTCC 57.045 32.000 8.02 0.00 34.76 3.01
560 566 7.933033 TGTAAACCGAACTCCTTAATAAACTGT 59.067 33.333 0.00 0.00 0.00 3.55
568 574 9.281371 GAACTCCTTAATAAACTGTGGTTTACT 57.719 33.333 3.89 0.00 46.46 2.24
572 578 7.174253 TCCTTAATAAACTGTGGTTTACTGCTG 59.826 37.037 3.89 0.00 46.46 4.41
692 702 5.976458 AGACATTCAGAGATTTCAGACTCC 58.024 41.667 0.00 0.00 34.13 3.85
853 886 3.067833 GTCAAGAAAGAAACGAGGAGGG 58.932 50.000 0.00 0.00 0.00 4.30
855 888 3.583086 TCAAGAAAGAAACGAGGAGGGAT 59.417 43.478 0.00 0.00 0.00 3.85
860 893 2.383855 AGAAACGAGGAGGGATGAGAG 58.616 52.381 0.00 0.00 0.00 3.20
862 895 2.065899 AACGAGGAGGGATGAGAGAG 57.934 55.000 0.00 0.00 0.00 3.20
863 896 1.217916 ACGAGGAGGGATGAGAGAGA 58.782 55.000 0.00 0.00 0.00 3.10
864 897 1.780309 ACGAGGAGGGATGAGAGAGAT 59.220 52.381 0.00 0.00 0.00 2.75
865 898 2.983192 ACGAGGAGGGATGAGAGAGATA 59.017 50.000 0.00 0.00 0.00 1.98
916 949 2.598632 CGGATCGGGCTGCGATTTC 61.599 63.158 0.30 0.00 30.82 2.17
949 982 3.285215 GAGGAGCGTCGGCGGATA 61.285 66.667 13.05 0.00 46.35 2.59
950 983 3.256716 GAGGAGCGTCGGCGGATAG 62.257 68.421 13.05 0.00 46.35 2.08
954 987 4.203076 GCGTCGGCGGATAGGTGT 62.203 66.667 13.05 0.00 38.78 4.16
974 1007 2.123640 CCGGAGAGGGAGGAGACC 60.124 72.222 0.00 0.00 35.97 3.85
985 1018 2.190578 GGAGACCAGCAATCGGGG 59.809 66.667 0.00 0.00 0.00 5.73
1007 1040 0.178987 TAGGAGAGAGCGATGGGGAC 60.179 60.000 0.00 0.00 0.00 4.46
1167 1201 4.282449 TCATAGTCTCTCCCGTCAAAAACA 59.718 41.667 0.00 0.00 0.00 2.83
1227 1261 0.318360 GACGATGTCGACACACCACA 60.318 55.000 22.71 0.00 43.02 4.17
1228 1262 0.596600 ACGATGTCGACACACCACAC 60.597 55.000 22.71 5.72 43.02 3.82
1229 1263 0.318699 CGATGTCGACACACCACACT 60.319 55.000 22.71 1.23 43.02 3.55
1318 1359 6.737254 TCAATCGGGTTTAGAATTTCAGAC 57.263 37.500 0.00 0.00 0.00 3.51
1366 1418 3.813166 TGTCGATTTGAACTGGAAGGAAC 59.187 43.478 0.00 0.00 39.30 3.62
1761 1827 9.914834 TGGGTAAAATTGTGTCTATTATAGCTT 57.085 29.630 0.00 0.00 0.00 3.74
1767 1833 9.899661 AAATTGTGTCTATTATAGCTTACACCA 57.100 29.630 15.45 8.63 37.11 4.17
1768 1834 8.888579 ATTGTGTCTATTATAGCTTACACCAC 57.111 34.615 15.45 6.05 37.11 4.16
1769 1835 7.412853 TGTGTCTATTATAGCTTACACCACA 57.587 36.000 15.45 7.80 37.11 4.17
1770 1836 7.489160 TGTGTCTATTATAGCTTACACCACAG 58.511 38.462 15.45 0.00 37.11 3.66
1771 1837 7.340999 TGTGTCTATTATAGCTTACACCACAGA 59.659 37.037 15.45 1.55 37.11 3.41
1772 1838 8.195436 GTGTCTATTATAGCTTACACCACAGAA 58.805 37.037 9.99 0.00 32.94 3.02
1773 1839 8.195436 TGTCTATTATAGCTTACACCACAGAAC 58.805 37.037 0.00 0.00 0.00 3.01
1774 1840 8.414778 GTCTATTATAGCTTACACCACAGAACT 58.585 37.037 0.00 0.00 0.00 3.01
1775 1841 8.978472 TCTATTATAGCTTACACCACAGAACTT 58.022 33.333 0.00 0.00 0.00 2.66
1851 1925 2.293677 ACTTGGTAGGTAGCGATCGATG 59.706 50.000 21.57 0.00 0.00 3.84
1872 1960 8.367911 TCGATGTTTTCTAATGTATAGATGGCT 58.632 33.333 0.00 0.00 0.00 4.75
1907 1999 2.003937 TTGTGCCCCTTAGTTTTCCC 57.996 50.000 0.00 0.00 0.00 3.97
2107 2216 6.599244 TGATTGACTGGGATTTTGTAGTGATC 59.401 38.462 0.00 0.00 0.00 2.92
2286 2404 5.757886 TGAAGTTAAGCGTTCATTTTCCTG 58.242 37.500 0.00 0.00 0.00 3.86
2737 2878 0.521735 CTTTCTTTGCAGTACCCGGC 59.478 55.000 0.00 0.00 0.00 6.13
2868 3015 4.098894 TGAACCTTCCTATTACCGGAACT 58.901 43.478 9.46 0.00 35.70 3.01
3113 3310 5.656416 TCATGTTTGATCCCAACCTTAATCC 59.344 40.000 0.00 0.00 30.88 3.01
3116 3313 5.656416 TGTTTGATCCCAACCTTAATCCATC 59.344 40.000 3.14 0.00 30.88 3.51
3258 3541 7.310361 CCAAAGCCTAATAAAATTTCTGGACCA 60.310 37.037 0.00 0.00 0.00 4.02
3284 3567 9.569122 ACAGAGGAATACTAAAAAGTTAGCAAA 57.431 29.630 0.00 0.00 40.48 3.68
3428 3714 7.821652 GGAAAAACTTTGTTCCCAAAATTTCA 58.178 30.769 0.00 0.00 38.60 2.69
3444 3730 9.709495 CCAAAATTTCAATTCTAGTGAATCCAA 57.291 29.630 0.00 0.00 41.62 3.53
3633 4000 4.776837 TGTTTGCCCCATTTCATGTATCTT 59.223 37.500 0.00 0.00 0.00 2.40
4020 4405 6.326583 ACAGTTAAGGCTGCCTTCTATGTATA 59.673 38.462 35.40 14.38 43.57 1.47
4371 4893 5.165961 TCCTCTTTTCTCAACCCACTATG 57.834 43.478 0.00 0.00 0.00 2.23
4377 4899 7.918076 TCTTTTCTCAACCCACTATGACTATT 58.082 34.615 0.00 0.00 0.00 1.73
4378 4900 8.383175 TCTTTTCTCAACCCACTATGACTATTT 58.617 33.333 0.00 0.00 0.00 1.40
4448 5012 5.003804 ACAGTAGTTTGGCTTATTGGTCTG 58.996 41.667 0.00 0.00 0.00 3.51
4511 5086 1.004927 GTATGTGCCGCAATTCTCGTC 60.005 52.381 0.00 0.00 0.00 4.20
4758 5343 6.757947 AGGTGCAATTGTAAATAATGCACATC 59.242 34.615 24.86 12.47 41.46 3.06
5182 5813 8.855110 TGTTACACATGGATATTCAAAACAGTT 58.145 29.630 0.00 0.00 0.00 3.16
5305 6146 4.664150 AGTTTACAACCCCACACAATTG 57.336 40.909 3.24 3.24 0.00 2.32
5373 6215 8.041323 TAGAACCTCTCTCAAATAATGGAACAC 58.959 37.037 0.00 0.00 36.95 3.32
5628 6470 8.177663 AGATACATTTGTTTCAGCGTCAATTAG 58.822 33.333 4.38 0.00 0.00 1.73
5697 6559 7.275888 TGCAATTCCTTGTATCCATAATGAC 57.724 36.000 0.00 0.00 34.69 3.06
5851 6724 2.747989 GTTCGGAAACTCCTGAATTCCC 59.252 50.000 2.27 0.00 39.56 3.97
6095 6983 9.492973 CAAAATTTGTTTTCTCTGGGTATGATT 57.507 29.630 0.00 0.00 0.00 2.57
6149 7044 3.204526 AGCACTCAGAGCAGCATAATTC 58.795 45.455 15.67 0.00 0.00 2.17
6155 7050 5.587844 ACTCAGAGCAGCATAATTCGAAATT 59.412 36.000 0.00 0.00 0.00 1.82
6172 7067 4.698304 CGAAATTGCCCTAAACTAAGGACA 59.302 41.667 0.00 0.00 39.15 4.02
6175 7070 3.536956 TGCCCTAAACTAAGGACATCG 57.463 47.619 0.00 0.00 39.15 3.84
6375 7275 5.678583 AGTACCATTCCATGTGAGAAGATG 58.321 41.667 0.00 0.00 0.00 2.90
6480 7381 2.686405 TGCAGCTGTGAATGATCATTCC 59.314 45.455 34.65 27.32 44.93 3.01
6568 7492 4.089361 TCTCCTCTAGTTGCATCAGAACA 58.911 43.478 0.00 0.00 0.00 3.18
6629 7553 8.432013 TGTCTGGATTATCATTAGTATTGCACT 58.568 33.333 0.00 0.00 41.62 4.40
6734 7658 3.063526 CGATGGAGGGGCGATGAT 58.936 61.111 0.00 0.00 0.00 2.45
6738 7662 4.996434 GGAGGGGCGATGATGGCG 62.996 72.222 0.00 0.00 34.76 5.69
6789 7714 3.097614 AGTTGTCGCTAGGTGGTCTATT 58.902 45.455 0.00 0.00 0.00 1.73
6841 7766 3.188254 TGTTCGTTGTACTGCCATGATTG 59.812 43.478 0.00 0.00 0.00 2.67
6853 7778 5.768662 ACTGCCATGATTGAAGATGAATAGG 59.231 40.000 0.00 0.00 0.00 2.57
6860 7785 8.615211 CATGATTGAAGATGAATAGGTCGAAAA 58.385 33.333 0.00 0.00 0.00 2.29
6869 7794 7.970614 AGATGAATAGGTCGAAAATTTTCTTGC 59.029 33.333 24.53 15.27 35.07 4.01
6981 7906 7.283329 GGGATAGAACAGACATTAGATTGGTT 58.717 38.462 0.00 0.00 0.00 3.67
7091 8328 4.081322 AGTTGTCGTCCCTACATGTTTT 57.919 40.909 2.30 0.00 0.00 2.43
7146 8389 3.229697 TCTAGATTCTCATGGGCGAGA 57.770 47.619 0.00 0.00 40.29 4.04
7214 8457 2.699846 TGCCTGGCATCAACTTTTTCTT 59.300 40.909 19.30 0.00 31.71 2.52
7220 8463 6.100404 TGGCATCAACTTTTTCTTTGCTAT 57.900 33.333 0.00 0.00 0.00 2.97
7221 8464 6.523840 TGGCATCAACTTTTTCTTTGCTATT 58.476 32.000 0.00 0.00 0.00 1.73
7222 8465 6.991531 TGGCATCAACTTTTTCTTTGCTATTT 59.008 30.769 0.00 0.00 0.00 1.40
7255 8498 2.296012 GAACGTTTCGGAAGAGCAAC 57.704 50.000 0.46 0.00 43.69 4.17
7256 8499 1.865340 GAACGTTTCGGAAGAGCAACT 59.135 47.619 0.46 0.00 43.69 3.16
7257 8500 2.806608 ACGTTTCGGAAGAGCAACTA 57.193 45.000 0.00 0.00 43.69 2.24
7258 8501 2.673833 ACGTTTCGGAAGAGCAACTAG 58.326 47.619 0.00 0.00 43.69 2.57
7259 8502 2.035576 ACGTTTCGGAAGAGCAACTAGT 59.964 45.455 0.00 0.00 43.69 2.57
7260 8503 3.057734 CGTTTCGGAAGAGCAACTAGTT 58.942 45.455 1.12 1.12 43.69 2.24
7261 8504 4.232221 CGTTTCGGAAGAGCAACTAGTTA 58.768 43.478 8.04 0.00 43.69 2.24
7262 8505 4.682860 CGTTTCGGAAGAGCAACTAGTTAA 59.317 41.667 8.04 0.00 43.69 2.01
7263 8506 5.388164 CGTTTCGGAAGAGCAACTAGTTAAC 60.388 44.000 8.04 3.72 43.69 2.01
7264 8507 3.829948 TCGGAAGAGCAACTAGTTAACG 58.170 45.455 8.04 5.74 34.84 3.18
7265 8508 3.503363 TCGGAAGAGCAACTAGTTAACGA 59.497 43.478 8.04 7.83 34.84 3.85
7266 8509 3.852536 CGGAAGAGCAACTAGTTAACGAG 59.147 47.826 13.50 13.50 0.00 4.18
7267 8510 3.613299 GGAAGAGCAACTAGTTAACGAGC 59.387 47.826 14.82 7.28 0.00 5.03
7268 8511 2.864968 AGAGCAACTAGTTAACGAGCG 58.135 47.619 14.82 8.20 0.00 5.03
7269 8512 1.320852 GAGCAACTAGTTAACGAGCGC 59.679 52.381 14.82 16.38 0.00 5.92
7270 8513 1.067776 AGCAACTAGTTAACGAGCGCT 60.068 47.619 20.45 20.45 0.00 5.92
7271 8514 1.320852 GCAACTAGTTAACGAGCGCTC 59.679 52.381 27.64 27.64 0.00 5.03
7272 8515 1.918609 CAACTAGTTAACGAGCGCTCC 59.081 52.381 30.66 16.60 0.00 4.70
7273 8516 1.461559 ACTAGTTAACGAGCGCTCCT 58.538 50.000 30.66 22.52 0.00 3.69
7274 8517 1.817447 ACTAGTTAACGAGCGCTCCTT 59.183 47.619 30.66 26.03 0.00 3.36
7275 8518 2.159407 ACTAGTTAACGAGCGCTCCTTC 60.159 50.000 30.66 14.44 0.00 3.46
7276 8519 0.456312 AGTTAACGAGCGCTCCTTCG 60.456 55.000 30.66 22.24 0.00 3.79
7277 8520 1.153901 TTAACGAGCGCTCCTTCGG 60.154 57.895 30.66 18.71 0.00 4.30
7278 8521 2.552585 TTAACGAGCGCTCCTTCGGG 62.553 60.000 30.66 17.99 0.00 5.14
7288 8531 3.627266 TCCTTCGGGAGCCTCATAA 57.373 52.632 0.00 0.00 39.58 1.90
7289 8532 1.120530 TCCTTCGGGAGCCTCATAAC 58.879 55.000 0.00 0.00 39.58 1.89
7290 8533 0.249489 CCTTCGGGAGCCTCATAACG 60.249 60.000 0.00 0.00 37.25 3.18
7291 8534 0.744874 CTTCGGGAGCCTCATAACGA 59.255 55.000 0.00 0.00 0.00 3.85
7292 8535 1.341531 CTTCGGGAGCCTCATAACGAT 59.658 52.381 0.00 0.00 0.00 3.73
7293 8536 0.959553 TCGGGAGCCTCATAACGATC 59.040 55.000 0.00 0.00 0.00 3.69
7294 8537 0.673985 CGGGAGCCTCATAACGATCA 59.326 55.000 0.00 0.00 0.00 2.92
7295 8538 1.336332 CGGGAGCCTCATAACGATCAG 60.336 57.143 0.00 0.00 0.00 2.90
7296 8539 1.606737 GGGAGCCTCATAACGATCAGC 60.607 57.143 0.00 0.00 0.00 4.26
7306 8549 3.084579 CGATCAGCGTCACTTGGC 58.915 61.111 0.00 0.00 34.64 4.52
7314 8557 3.482783 GTCACTTGGCGCGCTCTC 61.483 66.667 32.29 15.45 0.00 3.20
7315 8558 3.989787 TCACTTGGCGCGCTCTCA 61.990 61.111 32.29 18.24 0.00 3.27
7316 8559 3.485431 CACTTGGCGCGCTCTCAG 61.485 66.667 32.29 21.96 0.00 3.35
7322 8565 3.934684 GCGCGCTCTCAGCCATTC 61.935 66.667 26.67 0.00 38.18 2.67
7323 8566 3.624300 CGCGCTCTCAGCCATTCG 61.624 66.667 5.56 0.00 38.18 3.34
7324 8567 3.934684 GCGCTCTCAGCCATTCGC 61.935 66.667 0.00 0.00 38.18 4.70
7325 8568 3.267860 CGCTCTCAGCCATTCGCC 61.268 66.667 0.00 0.00 38.18 5.54
7326 8569 2.124983 GCTCTCAGCCATTCGCCA 60.125 61.111 0.00 0.00 38.78 5.69
7327 8570 2.467826 GCTCTCAGCCATTCGCCAC 61.468 63.158 0.00 0.00 38.78 5.01
7328 8571 2.125552 TCTCAGCCATTCGCCACG 60.126 61.111 0.00 0.00 38.78 4.94
7329 8572 2.434884 CTCAGCCATTCGCCACGT 60.435 61.111 0.00 0.00 38.78 4.49
7330 8573 2.741985 TCAGCCATTCGCCACGTG 60.742 61.111 9.08 9.08 38.78 4.49
7331 8574 3.049674 CAGCCATTCGCCACGTGT 61.050 61.111 15.65 0.00 38.78 4.49
7332 8575 2.742372 AGCCATTCGCCACGTGTC 60.742 61.111 15.65 0.00 38.78 3.67
7333 8576 4.147322 GCCATTCGCCACGTGTCG 62.147 66.667 13.61 13.61 0.00 4.35
7334 8577 4.147322 CCATTCGCCACGTGTCGC 62.147 66.667 15.09 10.47 0.00 5.19
7342 8585 4.700365 CACGTGTCGCGCTCTGGA 62.700 66.667 7.58 0.00 46.11 3.86
7343 8586 4.702081 ACGTGTCGCGCTCTGGAC 62.702 66.667 5.56 5.97 46.11 4.02
7351 8594 3.764466 CGCTCTGGACGCTCCCTT 61.764 66.667 2.23 0.00 35.03 3.95
7352 8595 2.185608 GCTCTGGACGCTCCCTTC 59.814 66.667 2.23 0.00 35.03 3.46
7353 8596 2.650116 GCTCTGGACGCTCCCTTCA 61.650 63.158 2.23 0.00 35.03 3.02
7354 8597 1.515020 CTCTGGACGCTCCCTTCAG 59.485 63.158 2.23 0.00 35.03 3.02
7355 8598 1.228894 TCTGGACGCTCCCTTCAGT 60.229 57.895 2.23 0.00 35.03 3.41
7356 8599 0.832135 TCTGGACGCTCCCTTCAGTT 60.832 55.000 2.23 0.00 35.03 3.16
7357 8600 0.035458 CTGGACGCTCCCTTCAGTTT 59.965 55.000 2.23 0.00 35.03 2.66
7358 8601 0.472471 TGGACGCTCCCTTCAGTTTT 59.528 50.000 2.23 0.00 35.03 2.43
7359 8602 1.133915 TGGACGCTCCCTTCAGTTTTT 60.134 47.619 2.23 0.00 35.03 1.94
7360 8603 1.266989 GGACGCTCCCTTCAGTTTTTG 59.733 52.381 0.00 0.00 0.00 2.44
7361 8604 1.947456 GACGCTCCCTTCAGTTTTTGT 59.053 47.619 0.00 0.00 0.00 2.83
7362 8605 2.357952 GACGCTCCCTTCAGTTTTTGTT 59.642 45.455 0.00 0.00 0.00 2.83
7363 8606 2.758423 ACGCTCCCTTCAGTTTTTGTTT 59.242 40.909 0.00 0.00 0.00 2.83
7364 8607 3.194755 ACGCTCCCTTCAGTTTTTGTTTT 59.805 39.130 0.00 0.00 0.00 2.43
7365 8608 4.180817 CGCTCCCTTCAGTTTTTGTTTTT 58.819 39.130 0.00 0.00 0.00 1.94
7383 8626 2.402640 TTTTATTTTTCCGCACGCGT 57.597 40.000 5.58 5.58 37.81 6.01
7384 8627 2.402640 TTTATTTTTCCGCACGCGTT 57.597 40.000 10.22 0.00 37.81 4.84
7385 8628 2.402640 TTATTTTTCCGCACGCGTTT 57.597 40.000 10.22 0.00 37.81 3.60
7386 8629 2.402640 TATTTTTCCGCACGCGTTTT 57.597 40.000 10.22 0.00 37.81 2.43
7387 8630 1.125270 ATTTTTCCGCACGCGTTTTC 58.875 45.000 10.22 0.04 37.81 2.29
7389 8632 2.968330 TTTTCCGCACGCGTTTTCGG 62.968 55.000 28.08 28.08 44.29 4.30
7392 8635 4.659874 CGCACGCGTTTTCGGCTT 62.660 61.111 10.22 0.00 44.29 4.35
7393 8636 2.353030 GCACGCGTTTTCGGCTTT 60.353 55.556 10.22 0.00 44.29 3.51
7394 8637 1.942223 GCACGCGTTTTCGGCTTTT 60.942 52.632 10.22 0.00 44.29 2.27
7395 8638 1.476235 GCACGCGTTTTCGGCTTTTT 61.476 50.000 10.22 0.00 44.29 1.94
7396 8639 1.744374 CACGCGTTTTCGGCTTTTTA 58.256 45.000 10.22 0.00 44.29 1.52
7397 8640 2.312348 CACGCGTTTTCGGCTTTTTAT 58.688 42.857 10.22 0.00 44.29 1.40
7398 8641 3.480894 CACGCGTTTTCGGCTTTTTATA 58.519 40.909 10.22 0.00 44.29 0.98
7399 8642 3.536837 CACGCGTTTTCGGCTTTTTATAG 59.463 43.478 10.22 0.00 44.29 1.31
7400 8643 3.432933 ACGCGTTTTCGGCTTTTTATAGA 59.567 39.130 5.58 0.00 44.29 1.98
7401 8644 3.777161 CGCGTTTTCGGCTTTTTATAGAC 59.223 43.478 0.00 0.00 44.29 2.59
7403 8646 4.328667 CGTTTTCGGCTTTTTATAGACGG 58.671 43.478 0.00 0.00 46.62 4.79
7404 8647 4.143052 CGTTTTCGGCTTTTTATAGACGGT 60.143 41.667 0.00 0.00 46.62 4.83
7405 8648 5.615325 CGTTTTCGGCTTTTTATAGACGGTT 60.615 40.000 0.00 0.00 46.62 4.44
7406 8649 5.945466 TTTCGGCTTTTTATAGACGGTTT 57.055 34.783 0.00 0.00 46.62 3.27
7407 8650 5.945466 TTCGGCTTTTTATAGACGGTTTT 57.055 34.783 0.00 0.00 46.62 2.43
7408 8651 5.945466 TCGGCTTTTTATAGACGGTTTTT 57.055 34.783 0.00 0.00 46.62 1.94
7441 8684 5.512573 TTTTTCGACGTTTTGGTTTTTCC 57.487 34.783 0.00 0.00 0.00 3.13
7442 8685 2.847959 TCGACGTTTTGGTTTTTCCC 57.152 45.000 0.00 0.00 34.77 3.97
7443 8686 1.404748 TCGACGTTTTGGTTTTTCCCC 59.595 47.619 0.00 0.00 34.77 4.81
7444 8687 1.842720 GACGTTTTGGTTTTTCCCCG 58.157 50.000 0.00 0.00 34.77 5.73
7445 8688 0.460722 ACGTTTTGGTTTTTCCCCGG 59.539 50.000 0.00 0.00 34.77 5.73
7446 8689 0.460722 CGTTTTGGTTTTTCCCCGGT 59.539 50.000 0.00 0.00 34.77 5.28
7447 8690 1.536496 CGTTTTGGTTTTTCCCCGGTC 60.536 52.381 0.00 0.00 34.77 4.79
7448 8691 1.758280 GTTTTGGTTTTTCCCCGGTCT 59.242 47.619 0.00 0.00 34.77 3.85
7449 8692 2.162264 TTTGGTTTTTCCCCGGTCTT 57.838 45.000 0.00 0.00 34.77 3.01
7450 8693 1.694844 TTGGTTTTTCCCCGGTCTTC 58.305 50.000 0.00 0.00 34.77 2.87
7451 8694 0.848053 TGGTTTTTCCCCGGTCTTCT 59.152 50.000 0.00 0.00 34.77 2.85
7452 8695 1.215924 TGGTTTTTCCCCGGTCTTCTT 59.784 47.619 0.00 0.00 34.77 2.52
7453 8696 2.442502 TGGTTTTTCCCCGGTCTTCTTA 59.557 45.455 0.00 0.00 34.77 2.10
7454 8697 3.079578 GGTTTTTCCCCGGTCTTCTTAG 58.920 50.000 0.00 0.00 0.00 2.18
7455 8698 2.484742 TTTTCCCCGGTCTTCTTAGC 57.515 50.000 0.00 0.00 0.00 3.09
7456 8699 1.652947 TTTCCCCGGTCTTCTTAGCT 58.347 50.000 0.00 0.00 0.00 3.32
7457 8700 1.652947 TTCCCCGGTCTTCTTAGCTT 58.347 50.000 0.00 0.00 0.00 3.74
7458 8701 1.652947 TCCCCGGTCTTCTTAGCTTT 58.347 50.000 0.00 0.00 0.00 3.51
7459 8702 1.982958 TCCCCGGTCTTCTTAGCTTTT 59.017 47.619 0.00 0.00 0.00 2.27
7460 8703 2.027469 TCCCCGGTCTTCTTAGCTTTTC 60.027 50.000 0.00 0.00 0.00 2.29
7461 8704 2.000447 CCCGGTCTTCTTAGCTTTTCG 59.000 52.381 0.00 0.00 0.00 3.46
7462 8705 2.353406 CCCGGTCTTCTTAGCTTTTCGA 60.353 50.000 0.00 0.00 0.00 3.71
7463 8706 2.666994 CCGGTCTTCTTAGCTTTTCGAC 59.333 50.000 0.00 0.00 0.00 4.20
7464 8707 3.314553 CGGTCTTCTTAGCTTTTCGACA 58.685 45.455 0.00 0.00 0.00 4.35
7465 8708 3.739300 CGGTCTTCTTAGCTTTTCGACAA 59.261 43.478 0.00 0.00 0.00 3.18
7466 8709 4.210537 CGGTCTTCTTAGCTTTTCGACAAA 59.789 41.667 0.00 0.00 0.00 2.83
7467 8710 5.277154 CGGTCTTCTTAGCTTTTCGACAAAA 60.277 40.000 0.00 0.00 0.00 2.44
7468 8711 6.492254 GGTCTTCTTAGCTTTTCGACAAAAA 58.508 36.000 0.00 0.00 35.56 1.94
7469 8712 6.414109 GGTCTTCTTAGCTTTTCGACAAAAAC 59.586 38.462 0.00 0.00 33.34 2.43
7470 8713 6.964934 GTCTTCTTAGCTTTTCGACAAAAACA 59.035 34.615 0.00 0.00 33.34 2.83
7471 8714 6.964934 TCTTCTTAGCTTTTCGACAAAAACAC 59.035 34.615 0.00 0.00 33.34 3.32
7472 8715 5.260140 TCTTAGCTTTTCGACAAAAACACG 58.740 37.500 0.00 0.00 33.34 4.49
7473 8716 3.481112 AGCTTTTCGACAAAAACACGT 57.519 38.095 0.00 0.00 33.34 4.49
7474 8717 3.828786 AGCTTTTCGACAAAAACACGTT 58.171 36.364 0.00 0.00 33.34 3.99
7475 8718 4.231439 AGCTTTTCGACAAAAACACGTTT 58.769 34.783 0.00 0.00 33.34 3.60
7476 8719 4.682401 AGCTTTTCGACAAAAACACGTTTT 59.318 33.333 2.06 2.06 43.88 2.43
7500 8743 3.036577 TTCGCGAGAAGTCACGGT 58.963 55.556 9.59 0.00 46.92 4.83
7501 8744 1.361271 TTCGCGAGAAGTCACGGTT 59.639 52.632 9.59 0.00 46.92 4.44
7502 8745 0.249155 TTCGCGAGAAGTCACGGTTT 60.249 50.000 9.59 0.00 46.92 3.27
7503 8746 0.249155 TCGCGAGAAGTCACGGTTTT 60.249 50.000 3.71 0.00 37.03 2.43
7504 8747 0.580104 CGCGAGAAGTCACGGTTTTT 59.420 50.000 0.00 0.00 0.00 1.94
7505 8748 1.396815 CGCGAGAAGTCACGGTTTTTC 60.397 52.381 0.00 0.00 0.00 2.29
7506 8749 1.865340 GCGAGAAGTCACGGTTTTTCT 59.135 47.619 0.48 0.00 32.87 2.52
7507 8750 2.287103 GCGAGAAGTCACGGTTTTTCTT 59.713 45.455 0.48 0.00 30.49 2.52
7508 8751 3.604085 GCGAGAAGTCACGGTTTTTCTTC 60.604 47.826 0.48 0.00 35.98 2.87
7509 8752 3.059800 CGAGAAGTCACGGTTTTTCTTCC 60.060 47.826 0.00 0.00 36.26 3.46
7510 8753 3.875134 GAGAAGTCACGGTTTTTCTTCCA 59.125 43.478 0.00 0.00 36.26 3.53
7511 8754 3.626217 AGAAGTCACGGTTTTTCTTCCAC 59.374 43.478 0.00 0.00 36.26 4.02
7512 8755 1.937899 AGTCACGGTTTTTCTTCCACG 59.062 47.619 0.00 0.00 0.00 4.94
7513 8756 1.935199 GTCACGGTTTTTCTTCCACGA 59.065 47.619 0.00 0.00 0.00 4.35
7514 8757 2.033151 GTCACGGTTTTTCTTCCACGAG 60.033 50.000 0.00 0.00 0.00 4.18
7515 8758 2.159071 TCACGGTTTTTCTTCCACGAGA 60.159 45.455 0.00 0.00 0.00 4.04
7516 8759 2.610374 CACGGTTTTTCTTCCACGAGAA 59.390 45.455 0.00 0.00 34.00 2.87
7522 8765 3.862124 CTTCCACGAGAAGCACGG 58.138 61.111 6.95 0.00 45.38 4.94
7523 8766 1.006102 CTTCCACGAGAAGCACGGT 60.006 57.895 6.95 0.00 45.38 4.83
7524 8767 0.600255 CTTCCACGAGAAGCACGGTT 60.600 55.000 6.95 0.00 45.38 4.44
7525 8768 0.878523 TTCCACGAGAAGCACGGTTG 60.879 55.000 0.00 0.00 34.93 3.77
7526 8769 1.594293 CCACGAGAAGCACGGTTGT 60.594 57.895 0.00 0.00 34.93 3.32
7537 8780 2.949714 CACGGTTGTGCTTTAGACAG 57.050 50.000 0.00 0.00 39.67 3.51
7538 8781 2.210116 CACGGTTGTGCTTTAGACAGT 58.790 47.619 0.00 0.00 39.67 3.55
7539 8782 2.221055 CACGGTTGTGCTTTAGACAGTC 59.779 50.000 0.00 0.00 39.67 3.51
7540 8783 2.159014 ACGGTTGTGCTTTAGACAGTCA 60.159 45.455 2.66 0.00 0.00 3.41
7541 8784 2.221055 CGGTTGTGCTTTAGACAGTCAC 59.779 50.000 2.66 0.00 0.00 3.67
7542 8785 2.221055 GGTTGTGCTTTAGACAGTCACG 59.779 50.000 2.66 0.00 0.00 4.35
7543 8786 2.148916 TGTGCTTTAGACAGTCACGG 57.851 50.000 2.66 0.00 0.00 4.94
7544 8787 0.790814 GTGCTTTAGACAGTCACGGC 59.209 55.000 2.66 2.42 0.00 5.68
7545 8788 0.320421 TGCTTTAGACAGTCACGGCC 60.320 55.000 2.66 0.00 0.00 6.13
7546 8789 1.352156 GCTTTAGACAGTCACGGCCG 61.352 60.000 26.86 26.86 0.00 6.13
7547 8790 0.038526 CTTTAGACAGTCACGGCCGT 60.039 55.000 28.70 28.70 0.00 5.68
7548 8791 0.319211 TTTAGACAGTCACGGCCGTG 60.319 55.000 45.04 45.04 46.64 4.94
7549 8792 2.758770 TTAGACAGTCACGGCCGTGC 62.759 60.000 45.55 38.06 45.04 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.906879 GCCGGGGCGTGTTTGTTT 61.907 61.111 2.18 0.00 0.00 2.83
10 11 4.650377 GATCTGATGGGCCGGGGC 62.650 72.222 13.01 13.01 41.06 5.80
11 12 2.851102 AGATCTGATGGGCCGGGG 60.851 66.667 2.18 0.00 0.00 5.73
12 13 2.142761 TCAGATCTGATGGGCCGGG 61.143 63.158 21.67 0.00 34.14 5.73
13 14 3.554716 TCAGATCTGATGGGCCGG 58.445 61.111 21.67 0.00 34.14 6.13
60 61 1.153549 GGCCTGAGTTGTCGGCTAG 60.154 63.158 0.00 0.00 40.29 3.42
88 89 3.391382 GGGCTAGCCTGTCGTGGT 61.391 66.667 32.18 0.00 36.10 4.16
91 92 3.775654 GCAGGGCTAGCCTGTCGT 61.776 66.667 32.18 10.19 37.58 4.34
100 101 3.399181 CGTTGGAGGGCAGGGCTA 61.399 66.667 0.00 0.00 0.00 3.93
117 119 1.679032 GGTGGTGACAAGATAGGTGCC 60.679 57.143 0.00 0.00 46.06 5.01
141 143 3.056328 GCGAGTTTGACAGGGCCC 61.056 66.667 16.46 16.46 0.00 5.80
212 215 1.965930 GTGATGGCGTTGTGGCTCA 60.966 57.895 0.00 0.00 45.14 4.26
248 251 0.453793 CTGGGCAACACGTGAAACAA 59.546 50.000 25.01 1.87 34.58 2.83
249 252 0.393132 TCTGGGCAACACGTGAAACA 60.393 50.000 25.01 12.10 34.58 2.83
252 255 1.433053 CGTTCTGGGCAACACGTGAA 61.433 55.000 25.01 0.00 39.74 3.18
260 263 0.392461 GTGGCTATCGTTCTGGGCAA 60.392 55.000 0.00 0.00 36.10 4.52
261 264 1.220749 GTGGCTATCGTTCTGGGCA 59.779 57.895 0.00 0.00 0.00 5.36
293 296 2.555227 GCTCTTCCCTGAATTTGGGTCA 60.555 50.000 14.64 5.22 44.84 4.02
348 352 2.896443 GCAGCTAGAGGAAGCCGT 59.104 61.111 0.00 0.00 43.86 5.68
404 409 1.402325 GCACAATCCTTTGTTACGGGC 60.402 52.381 0.00 0.00 43.57 6.13
405 410 1.201414 GGCACAATCCTTTGTTACGGG 59.799 52.381 0.00 0.00 43.57 5.28
406 411 1.883275 TGGCACAATCCTTTGTTACGG 59.117 47.619 0.00 0.00 43.57 4.02
407 412 2.292016 TGTGGCACAATCCTTTGTTACG 59.708 45.455 19.74 0.00 43.57 3.18
424 429 6.033966 GCCTCGGAATTTAAAGTATTTGTGG 58.966 40.000 0.00 0.00 39.63 4.17
471 476 3.244596 GGCGCCCCTCTATTAAAGAAGAT 60.245 47.826 18.11 0.00 32.46 2.40
481 486 2.189521 CAAACGGCGCCCCTCTAT 59.810 61.111 23.46 0.00 0.00 1.98
579 589 2.318207 ACCCACCCCACTCTAGAGTATT 59.682 50.000 24.75 6.95 40.20 1.89
581 591 1.390287 ACCCACCCCACTCTAGAGTA 58.610 55.000 24.75 0.00 40.20 2.59
582 592 0.492276 AACCCACCCCACTCTAGAGT 59.508 55.000 20.00 20.00 43.61 3.24
583 593 1.657804 AAACCCACCCCACTCTAGAG 58.342 55.000 18.49 18.49 0.00 2.43
585 595 2.971901 AAAAACCCACCCCACTCTAG 57.028 50.000 0.00 0.00 0.00 2.43
605 615 0.690762 GCCACCCTACAAACAGAGGA 59.309 55.000 0.00 0.00 34.46 3.71
615 625 0.247736 CAGTGTCTCTGCCACCCTAC 59.752 60.000 0.00 0.00 37.36 3.18
692 702 2.501610 GGCTAAGGGCGGACTCTG 59.498 66.667 0.00 0.00 42.94 3.35
833 865 2.969950 TCCCTCCTCGTTTCTTTCTTGA 59.030 45.455 0.00 0.00 0.00 3.02
853 886 4.950050 TCGGGCTTTTTATCTCTCTCATC 58.050 43.478 0.00 0.00 0.00 2.92
855 888 4.383118 CCTTCGGGCTTTTTATCTCTCTCA 60.383 45.833 0.00 0.00 0.00 3.27
860 893 4.138487 TCTCCTTCGGGCTTTTTATCTC 57.862 45.455 0.00 0.00 34.44 2.75
862 895 5.238868 GGTATTCTCCTTCGGGCTTTTTATC 59.761 44.000 0.00 0.00 34.44 1.75
863 896 5.131067 GGTATTCTCCTTCGGGCTTTTTAT 58.869 41.667 0.00 0.00 34.44 1.40
864 897 4.019141 TGGTATTCTCCTTCGGGCTTTTTA 60.019 41.667 0.00 0.00 34.44 1.52
865 898 3.245122 TGGTATTCTCCTTCGGGCTTTTT 60.245 43.478 0.00 0.00 34.44 1.94
949 982 0.324460 CTCCCTCTCCGGTTACACCT 60.324 60.000 0.00 0.00 35.66 4.00
950 983 1.328430 CCTCCCTCTCCGGTTACACC 61.328 65.000 0.00 0.00 34.05 4.16
954 987 0.258194 GTCTCCTCCCTCTCCGGTTA 59.742 60.000 0.00 0.00 0.00 2.85
974 1007 0.604780 CTCCTATGCCCCGATTGCTG 60.605 60.000 0.00 0.00 0.00 4.41
985 1018 0.246086 CCCATCGCTCTCTCCTATGC 59.754 60.000 0.00 0.00 0.00 3.14
1050 1083 3.680196 TCCACCCTAGGCTCCGGT 61.680 66.667 2.05 0.00 0.00 5.28
1227 1261 4.699637 TCAATCAAAACACGGTCAGTAGT 58.300 39.130 0.00 0.00 0.00 2.73
1228 1262 5.862924 ATCAATCAAAACACGGTCAGTAG 57.137 39.130 0.00 0.00 0.00 2.57
1229 1263 5.760743 TCAATCAATCAAAACACGGTCAGTA 59.239 36.000 0.00 0.00 0.00 2.74
1529 1588 1.153823 CCCGAACCACTGCTCGTAG 60.154 63.158 0.00 0.00 33.17 3.51
1755 1821 5.228945 ACAAGTTCTGTGGTGTAAGCTAT 57.771 39.130 0.00 0.00 36.69 2.97
1756 1822 4.682778 ACAAGTTCTGTGGTGTAAGCTA 57.317 40.909 0.00 0.00 36.69 3.32
1757 1823 3.560636 ACAAGTTCTGTGGTGTAAGCT 57.439 42.857 0.00 0.00 36.69 3.74
1758 1824 5.744666 TTAACAAGTTCTGTGGTGTAAGC 57.255 39.130 0.00 0.00 38.67 3.09
1759 1825 6.038271 AGCTTTAACAAGTTCTGTGGTGTAAG 59.962 38.462 0.00 0.00 38.67 2.34
1760 1826 5.883673 AGCTTTAACAAGTTCTGTGGTGTAA 59.116 36.000 0.00 0.00 38.67 2.41
1761 1827 5.433526 AGCTTTAACAAGTTCTGTGGTGTA 58.566 37.500 0.00 0.00 38.67 2.90
1762 1828 4.270008 AGCTTTAACAAGTTCTGTGGTGT 58.730 39.130 0.00 0.00 38.67 4.16
1763 1829 4.552767 CGAGCTTTAACAAGTTCTGTGGTG 60.553 45.833 0.00 0.00 37.94 4.17
1764 1830 3.560068 CGAGCTTTAACAAGTTCTGTGGT 59.440 43.478 0.00 0.00 37.94 4.16
1765 1831 3.607078 GCGAGCTTTAACAAGTTCTGTGG 60.607 47.826 0.00 0.00 37.94 4.17
1766 1832 3.248602 AGCGAGCTTTAACAAGTTCTGTG 59.751 43.478 0.00 0.00 37.94 3.66
1767 1833 3.467803 AGCGAGCTTTAACAAGTTCTGT 58.532 40.909 0.00 0.00 37.94 3.41
1768 1834 5.591643 TTAGCGAGCTTTAACAAGTTCTG 57.408 39.130 1.86 0.00 37.94 3.02
1769 1835 5.847670 CTTAGCGAGCTTTAACAAGTTCT 57.152 39.130 1.86 0.00 37.94 3.01
1822 1888 7.226128 CGATCGCTACCTACCAAGTATATATCA 59.774 40.741 0.26 0.00 0.00 2.15
1823 1889 7.440556 TCGATCGCTACCTACCAAGTATATATC 59.559 40.741 11.09 0.00 0.00 1.63
1824 1890 7.278135 TCGATCGCTACCTACCAAGTATATAT 58.722 38.462 11.09 0.00 0.00 0.86
1825 1891 6.643388 TCGATCGCTACCTACCAAGTATATA 58.357 40.000 11.09 0.00 0.00 0.86
1840 1914 9.556030 CTATACATTAGAAAACATCGATCGCTA 57.444 33.333 11.09 1.05 0.00 4.26
1845 1919 9.155975 GCCATCTATACATTAGAAAACATCGAT 57.844 33.333 0.00 0.00 0.00 3.59
1851 1925 9.331282 AGAACAGCCATCTATACATTAGAAAAC 57.669 33.333 0.00 0.00 0.00 2.43
1872 1960 5.105392 GGGGCACAATCATGAAAATAGAACA 60.105 40.000 0.00 0.00 0.00 3.18
1885 1973 3.161866 GGAAAACTAAGGGGCACAATCA 58.838 45.455 0.00 0.00 0.00 2.57
1907 1999 9.352784 TCAACTTTTCTTGCAATAAAATATCCG 57.647 29.630 19.33 11.85 0.00 4.18
2003 2097 7.151308 TGACTTTTGGTAAAACTATGCAATGG 58.849 34.615 0.00 0.00 0.00 3.16
2079 2186 6.375174 CACTACAAAATCCCAGTCAATCATGA 59.625 38.462 0.00 0.00 0.00 3.07
2107 2216 4.056050 GCAACGGTACCTGGATTATACAG 58.944 47.826 10.90 0.00 35.74 2.74
2286 2404 3.089284 CAAAGGAACCAATACCACCCTC 58.911 50.000 0.00 0.00 0.00 4.30
2964 3161 7.658525 ACACAGTCTCTCAAGATGATAGAAT 57.341 36.000 0.00 0.00 32.49 2.40
3233 3516 7.545615 GTGGTCCAGAAATTTTATTAGGCTTTG 59.454 37.037 0.00 0.00 0.00 2.77
3258 3541 9.569122 TTTGCTAACTTTTTAGTATTCCTCTGT 57.431 29.630 0.00 0.00 37.59 3.41
3284 3567 8.449397 CCTGTATTAATTAGATAGACTACGCGT 58.551 37.037 19.17 19.17 0.00 6.01
3348 3631 7.624549 TCTGCTATGGAAATCTTACAACTTCT 58.375 34.615 0.00 0.00 0.00 2.85
4353 4875 8.567285 AAATAGTCATAGTGGGTTGAGAAAAG 57.433 34.615 0.00 0.00 0.00 2.27
4511 5086 3.990092 TGCATATCCTACTAGCCAAACG 58.010 45.455 0.00 0.00 0.00 3.60
4758 5343 8.267620 TGTGACATCCTCTAATTGTGTTATTG 57.732 34.615 0.00 0.00 0.00 1.90
5182 5813 0.326904 AGATGTGGATGAGCCTGGGA 60.327 55.000 0.00 0.00 37.63 4.37
5305 6146 9.196552 GGGTTGCTAGATCAAATTTATATTTGC 57.803 33.333 12.29 2.72 46.61 3.68
5373 6215 2.926200 CAGACATGGAAGTAAGTGCTCG 59.074 50.000 0.00 0.00 0.00 5.03
5628 6470 1.893801 CATACTCCTCCCGTCCCATAC 59.106 57.143 0.00 0.00 0.00 2.39
5851 6724 7.370383 AGTATGGAGTGTTTTATTGCAAACAG 58.630 34.615 1.71 0.00 45.23 3.16
5947 6832 1.098712 GGCGTTTTGTGGGAGTGTCA 61.099 55.000 0.00 0.00 0.00 3.58
6071 6959 9.093458 AGAATCATACCCAGAGAAAACAAATTT 57.907 29.630 0.00 0.00 0.00 1.82
6072 6960 8.655935 AGAATCATACCCAGAGAAAACAAATT 57.344 30.769 0.00 0.00 0.00 1.82
6095 6983 7.062749 TGTAGGAAGCAGTCTTAAAGAAAGA 57.937 36.000 0.00 0.00 42.07 2.52
6149 7044 4.698304 TGTCCTTAGTTTAGGGCAATTTCG 59.302 41.667 0.00 0.00 46.51 3.46
6480 7381 1.206371 CCGTACCCTCTTGTACCCTTG 59.794 57.143 0.00 0.00 38.26 3.61
6568 7492 6.294361 AGCAAAAGGGTTTACTTCAAGTTT 57.706 33.333 0.00 0.00 0.00 2.66
6629 7553 6.912203 TGCAAAACATAGCGCTATTAGTAA 57.088 33.333 27.04 0.84 0.00 2.24
6682 7606 4.394300 GTCCTCCTTGATTTGTCTCACATG 59.606 45.833 0.00 0.00 0.00 3.21
6683 7607 4.566488 GGTCCTCCTTGATTTGTCTCACAT 60.566 45.833 0.00 0.00 0.00 3.21
6815 7740 3.052455 TGGCAGTACAACGAACATCAT 57.948 42.857 0.00 0.00 0.00 2.45
6818 7743 3.052455 TCATGGCAGTACAACGAACAT 57.948 42.857 0.00 0.00 0.00 2.71
6824 7749 5.355071 TCATCTTCAATCATGGCAGTACAAC 59.645 40.000 0.00 0.00 0.00 3.32
6830 7755 5.768662 ACCTATTCATCTTCAATCATGGCAG 59.231 40.000 0.00 0.00 0.00 4.85
6897 7822 5.865085 TGCTTCCACAGACTATTAGTGTTT 58.135 37.500 0.00 0.00 0.00 2.83
6953 7878 3.958147 TCTAATGTCTGTTCTATCCCGCA 59.042 43.478 0.00 0.00 0.00 5.69
6954 7879 4.585955 TCTAATGTCTGTTCTATCCCGC 57.414 45.455 0.00 0.00 0.00 6.13
6955 7880 5.928839 CCAATCTAATGTCTGTTCTATCCCG 59.071 44.000 0.00 0.00 0.00 5.14
6981 7906 7.715249 GCTAATTAAGTGGTCATAGTTCCATGA 59.285 37.037 0.00 0.00 36.09 3.07
7146 8389 3.724738 TCCTTCTAGACCAGAGAGGCTAT 59.275 47.826 0.00 0.00 43.14 2.97
7176 8419 4.162690 ATCTCCGGAAGCACGCCC 62.163 66.667 5.23 0.00 0.00 6.13
7214 8457 3.500982 GCTGTCATTTCGCAAATAGCAA 58.499 40.909 0.00 0.00 46.13 3.91
7220 8463 1.658931 CGTTCGCTGTCATTTCGCAAA 60.659 47.619 0.00 0.00 0.00 3.68
7221 8464 0.110867 CGTTCGCTGTCATTTCGCAA 60.111 50.000 0.00 0.00 0.00 4.85
7222 8465 1.218875 ACGTTCGCTGTCATTTCGCA 61.219 50.000 0.00 0.00 0.00 5.10
7247 8490 3.243336 CGCTCGTTAACTAGTTGCTCTT 58.757 45.455 18.56 0.00 0.00 2.85
7248 8491 2.864968 CGCTCGTTAACTAGTTGCTCT 58.135 47.619 18.56 0.00 0.00 4.09
7249 8492 1.320852 GCGCTCGTTAACTAGTTGCTC 59.679 52.381 18.56 3.86 0.00 4.26
7250 8493 1.067776 AGCGCTCGTTAACTAGTTGCT 60.068 47.619 18.56 17.34 0.00 3.91
7251 8494 1.320852 GAGCGCTCGTTAACTAGTTGC 59.679 52.381 23.61 11.18 0.00 4.17
7252 8495 1.918609 GGAGCGCTCGTTAACTAGTTG 59.081 52.381 29.81 1.62 0.00 3.16
7253 8496 1.817447 AGGAGCGCTCGTTAACTAGTT 59.183 47.619 29.81 13.68 0.00 2.24
7254 8497 1.461559 AGGAGCGCTCGTTAACTAGT 58.538 50.000 29.81 3.95 0.00 2.57
7255 8498 2.452105 GAAGGAGCGCTCGTTAACTAG 58.548 52.381 36.96 3.24 37.75 2.57
7256 8499 1.202110 CGAAGGAGCGCTCGTTAACTA 60.202 52.381 36.96 0.00 37.75 2.24
7257 8500 0.456312 CGAAGGAGCGCTCGTTAACT 60.456 55.000 36.96 23.16 37.75 2.24
7258 8501 1.989163 CGAAGGAGCGCTCGTTAAC 59.011 57.895 36.96 26.47 37.75 2.01
7259 8502 4.470876 CGAAGGAGCGCTCGTTAA 57.529 55.556 36.96 0.00 37.75 2.01
7272 8515 0.744874 TCGTTATGAGGCTCCCGAAG 59.255 55.000 12.86 1.03 0.00 3.79
7273 8516 1.340248 GATCGTTATGAGGCTCCCGAA 59.660 52.381 12.86 0.16 0.00 4.30
7274 8517 0.959553 GATCGTTATGAGGCTCCCGA 59.040 55.000 12.86 14.08 0.00 5.14
7275 8518 0.673985 TGATCGTTATGAGGCTCCCG 59.326 55.000 12.86 9.14 0.00 5.14
7276 8519 1.606737 GCTGATCGTTATGAGGCTCCC 60.607 57.143 12.86 0.00 0.00 4.30
7277 8520 1.789506 GCTGATCGTTATGAGGCTCC 58.210 55.000 12.86 0.00 0.00 4.70
7278 8521 1.413382 CGCTGATCGTTATGAGGCTC 58.587 55.000 7.79 7.79 0.00 4.70
7279 8522 3.577231 CGCTGATCGTTATGAGGCT 57.423 52.632 0.00 0.00 0.00 4.58
7289 8532 2.792290 CGCCAAGTGACGCTGATCG 61.792 63.158 0.00 0.00 45.38 3.69
7290 8533 3.084579 CGCCAAGTGACGCTGATC 58.915 61.111 0.00 0.00 0.00 2.92
7297 8540 3.482783 GAGAGCGCGCCAAGTGAC 61.483 66.667 30.33 10.54 0.00 3.67
7298 8541 3.921767 CTGAGAGCGCGCCAAGTGA 62.922 63.158 30.33 6.19 0.00 3.41
7299 8542 3.485431 CTGAGAGCGCGCCAAGTG 61.485 66.667 30.33 12.20 0.00 3.16
7305 8548 3.934684 GAATGGCTGAGAGCGCGC 61.935 66.667 26.66 26.66 43.62 6.86
7306 8549 3.624300 CGAATGGCTGAGAGCGCG 61.624 66.667 0.00 0.00 43.62 6.86
7307 8550 3.934684 GCGAATGGCTGAGAGCGC 61.935 66.667 0.00 0.00 43.62 5.92
7308 8551 3.267860 GGCGAATGGCTGAGAGCG 61.268 66.667 0.00 0.00 43.62 5.03
7309 8552 2.124983 TGGCGAATGGCTGAGAGC 60.125 61.111 0.00 0.00 42.94 4.09
7310 8553 2.169789 CGTGGCGAATGGCTGAGAG 61.170 63.158 0.00 0.00 42.94 3.20
7311 8554 2.125552 CGTGGCGAATGGCTGAGA 60.126 61.111 0.00 0.00 42.94 3.27
7312 8555 2.434884 ACGTGGCGAATGGCTGAG 60.435 61.111 0.00 0.00 42.94 3.35
7313 8556 2.741985 CACGTGGCGAATGGCTGA 60.742 61.111 7.95 0.00 42.94 4.26
7314 8557 3.027170 GACACGTGGCGAATGGCTG 62.027 63.158 21.57 0.00 42.94 4.85
7315 8558 2.742372 GACACGTGGCGAATGGCT 60.742 61.111 21.57 0.00 42.94 4.75
7325 8568 4.700365 TCCAGAGCGCGACACGTG 62.700 66.667 15.48 15.48 46.11 4.49
7326 8569 4.702081 GTCCAGAGCGCGACACGT 62.702 66.667 12.10 0.00 46.11 4.49
7334 8577 3.708220 GAAGGGAGCGTCCAGAGCG 62.708 68.421 6.41 0.00 38.64 5.03
7335 8578 2.185608 GAAGGGAGCGTCCAGAGC 59.814 66.667 6.41 0.00 38.64 4.09
7336 8579 1.254284 ACTGAAGGGAGCGTCCAGAG 61.254 60.000 0.00 0.00 38.64 3.35
7337 8580 0.832135 AACTGAAGGGAGCGTCCAGA 60.832 55.000 0.00 0.00 38.64 3.86
7338 8581 0.035458 AAACTGAAGGGAGCGTCCAG 59.965 55.000 6.41 0.00 38.64 3.86
7339 8582 0.472471 AAAACTGAAGGGAGCGTCCA 59.528 50.000 6.41 0.00 38.64 4.02
7340 8583 1.266989 CAAAAACTGAAGGGAGCGTCC 59.733 52.381 0.00 0.00 35.23 4.79
7341 8584 1.947456 ACAAAAACTGAAGGGAGCGTC 59.053 47.619 0.00 0.00 0.00 5.19
7342 8585 2.052782 ACAAAAACTGAAGGGAGCGT 57.947 45.000 0.00 0.00 0.00 5.07
7343 8586 3.436700 AAACAAAAACTGAAGGGAGCG 57.563 42.857 0.00 0.00 0.00 5.03
7363 8606 2.728922 ACGCGTGCGGAAAAATAAAAA 58.271 38.095 12.93 0.00 44.69 1.94
7364 8607 2.402640 ACGCGTGCGGAAAAATAAAA 57.597 40.000 12.93 0.00 44.69 1.52
7365 8608 2.402640 AACGCGTGCGGAAAAATAAA 57.597 40.000 14.98 0.00 44.69 1.40
7366 8609 2.402640 AAACGCGTGCGGAAAAATAA 57.597 40.000 14.98 0.00 44.69 1.40
7367 8610 2.308811 GAAAACGCGTGCGGAAAAATA 58.691 42.857 14.98 0.00 44.69 1.40
7368 8611 1.125270 GAAAACGCGTGCGGAAAAAT 58.875 45.000 14.98 0.00 44.69 1.82
7369 8612 1.194896 CGAAAACGCGTGCGGAAAAA 61.195 50.000 14.98 0.00 44.69 1.94
7370 8613 1.651730 CGAAAACGCGTGCGGAAAA 60.652 52.632 14.98 0.00 44.69 2.29
7371 8614 2.052941 CGAAAACGCGTGCGGAAA 60.053 55.556 14.98 0.00 44.69 3.13
7372 8615 4.003011 CCGAAAACGCGTGCGGAA 62.003 61.111 31.93 0.00 46.29 4.30
7375 8618 4.659874 AAGCCGAAAACGCGTGCG 62.660 61.111 14.98 17.33 46.03 5.34
7376 8619 1.476235 AAAAAGCCGAAAACGCGTGC 61.476 50.000 14.98 12.13 0.00 5.34
7377 8620 1.744374 TAAAAAGCCGAAAACGCGTG 58.256 45.000 14.98 0.00 0.00 5.34
7378 8621 2.691984 ATAAAAAGCCGAAAACGCGT 57.308 40.000 5.58 5.58 0.00 6.01
7379 8622 3.777161 GTCTATAAAAAGCCGAAAACGCG 59.223 43.478 3.53 3.53 0.00 6.01
7380 8623 3.777161 CGTCTATAAAAAGCCGAAAACGC 59.223 43.478 0.00 0.00 0.00 4.84
7381 8624 4.143052 ACCGTCTATAAAAAGCCGAAAACG 60.143 41.667 0.00 0.00 0.00 3.60
7382 8625 5.287170 ACCGTCTATAAAAAGCCGAAAAC 57.713 39.130 0.00 0.00 0.00 2.43
7383 8626 5.945466 AACCGTCTATAAAAAGCCGAAAA 57.055 34.783 0.00 0.00 0.00 2.29
7384 8627 5.945466 AAACCGTCTATAAAAAGCCGAAA 57.055 34.783 0.00 0.00 0.00 3.46
7385 8628 5.945466 AAAACCGTCTATAAAAAGCCGAA 57.055 34.783 0.00 0.00 0.00 4.30
7386 8629 5.945466 AAAAACCGTCTATAAAAAGCCGA 57.055 34.783 0.00 0.00 0.00 5.54
7419 8662 4.388165 GGGAAAAACCAAAACGTCGAAAAA 59.612 37.500 0.00 0.00 41.20 1.94
7420 8663 3.925299 GGGAAAAACCAAAACGTCGAAAA 59.075 39.130 0.00 0.00 41.20 2.29
7421 8664 3.509740 GGGAAAAACCAAAACGTCGAAA 58.490 40.909 0.00 0.00 41.20 3.46
7422 8665 2.159268 GGGGAAAAACCAAAACGTCGAA 60.159 45.455 0.00 0.00 41.20 3.71
7423 8666 1.404748 GGGGAAAAACCAAAACGTCGA 59.595 47.619 0.00 0.00 41.20 4.20
7424 8667 1.842720 GGGGAAAAACCAAAACGTCG 58.157 50.000 0.00 0.00 41.20 5.12
7425 8668 1.536496 CCGGGGAAAAACCAAAACGTC 60.536 52.381 0.00 0.00 41.20 4.34
7426 8669 0.460722 CCGGGGAAAAACCAAAACGT 59.539 50.000 0.00 0.00 41.20 3.99
7427 8670 0.460722 ACCGGGGAAAAACCAAAACG 59.539 50.000 6.32 0.00 41.20 3.60
7428 8671 1.758280 AGACCGGGGAAAAACCAAAAC 59.242 47.619 6.32 0.00 41.20 2.43
7429 8672 2.162264 AGACCGGGGAAAAACCAAAA 57.838 45.000 6.32 0.00 41.20 2.44
7430 8673 2.033372 GAAGACCGGGGAAAAACCAAA 58.967 47.619 6.32 0.00 41.20 3.28
7431 8674 1.215924 AGAAGACCGGGGAAAAACCAA 59.784 47.619 6.32 0.00 41.20 3.67
7432 8675 0.848053 AGAAGACCGGGGAAAAACCA 59.152 50.000 6.32 0.00 41.20 3.67
7433 8676 1.991121 AAGAAGACCGGGGAAAAACC 58.009 50.000 6.32 0.00 38.08 3.27
7434 8677 2.486982 GCTAAGAAGACCGGGGAAAAAC 59.513 50.000 6.32 0.00 0.00 2.43
7435 8678 2.374170 AGCTAAGAAGACCGGGGAAAAA 59.626 45.455 6.32 0.00 0.00 1.94
7436 8679 1.982958 AGCTAAGAAGACCGGGGAAAA 59.017 47.619 6.32 0.00 0.00 2.29
7437 8680 1.652947 AGCTAAGAAGACCGGGGAAA 58.347 50.000 6.32 0.00 0.00 3.13
7438 8681 1.652947 AAGCTAAGAAGACCGGGGAA 58.347 50.000 6.32 0.00 0.00 3.97
7439 8682 1.652947 AAAGCTAAGAAGACCGGGGA 58.347 50.000 6.32 0.00 0.00 4.81
7440 8683 2.357075 GAAAAGCTAAGAAGACCGGGG 58.643 52.381 6.32 0.00 0.00 5.73
7441 8684 2.000447 CGAAAAGCTAAGAAGACCGGG 59.000 52.381 6.32 0.00 0.00 5.73
7442 8685 2.666994 GTCGAAAAGCTAAGAAGACCGG 59.333 50.000 0.00 0.00 0.00 5.28
7443 8686 3.314553 TGTCGAAAAGCTAAGAAGACCG 58.685 45.455 0.00 0.00 0.00 4.79
7444 8687 5.668558 TTTGTCGAAAAGCTAAGAAGACC 57.331 39.130 0.00 0.00 0.00 3.85
7445 8688 6.964934 TGTTTTTGTCGAAAAGCTAAGAAGAC 59.035 34.615 0.00 0.00 37.88 3.01
7446 8689 6.964934 GTGTTTTTGTCGAAAAGCTAAGAAGA 59.035 34.615 0.00 0.00 37.88 2.87
7447 8690 6.076092 CGTGTTTTTGTCGAAAAGCTAAGAAG 60.076 38.462 0.00 0.00 37.88 2.85
7448 8691 5.735427 CGTGTTTTTGTCGAAAAGCTAAGAA 59.265 36.000 0.00 0.00 37.88 2.52
7449 8692 5.163834 ACGTGTTTTTGTCGAAAAGCTAAGA 60.164 36.000 0.00 0.00 37.88 2.10
7450 8693 5.025826 ACGTGTTTTTGTCGAAAAGCTAAG 58.974 37.500 0.00 0.00 37.88 2.18
7451 8694 4.972201 ACGTGTTTTTGTCGAAAAGCTAA 58.028 34.783 0.00 0.00 37.88 3.09
7452 8695 4.603231 ACGTGTTTTTGTCGAAAAGCTA 57.397 36.364 0.00 0.00 37.88 3.32
7453 8696 3.481112 ACGTGTTTTTGTCGAAAAGCT 57.519 38.095 0.00 0.00 37.88 3.74
7454 8697 4.555718 AAACGTGTTTTTGTCGAAAAGC 57.444 36.364 0.00 0.00 37.88 3.51
7476 8719 4.191662 GTGACTTCTCGCGAAAGAAAAA 57.808 40.909 26.61 9.33 34.95 1.94
7477 8720 3.854286 GTGACTTCTCGCGAAAGAAAA 57.146 42.857 26.61 14.50 34.95 2.29
7486 8729 1.865340 AGAAAAACCGTGACTTCTCGC 59.135 47.619 0.00 0.00 0.00 5.03
7487 8730 3.059800 GGAAGAAAAACCGTGACTTCTCG 60.060 47.826 0.00 0.00 37.62 4.04
7488 8731 3.875134 TGGAAGAAAAACCGTGACTTCTC 59.125 43.478 0.00 0.00 37.62 2.87
7489 8732 3.626217 GTGGAAGAAAAACCGTGACTTCT 59.374 43.478 0.00 0.00 37.62 2.85
7490 8733 3.545426 CGTGGAAGAAAAACCGTGACTTC 60.545 47.826 0.00 0.00 37.02 3.01
7491 8734 2.353579 CGTGGAAGAAAAACCGTGACTT 59.646 45.455 0.00 0.00 0.00 3.01
7492 8735 1.937899 CGTGGAAGAAAAACCGTGACT 59.062 47.619 0.00 0.00 0.00 3.41
7493 8736 1.935199 TCGTGGAAGAAAAACCGTGAC 59.065 47.619 0.00 0.00 0.00 3.67
7494 8737 2.159071 TCTCGTGGAAGAAAAACCGTGA 60.159 45.455 0.00 0.00 0.00 4.35
7495 8738 2.206750 TCTCGTGGAAGAAAAACCGTG 58.793 47.619 0.00 0.00 0.00 4.94
7496 8739 2.607631 TCTCGTGGAAGAAAAACCGT 57.392 45.000 0.00 0.00 0.00 4.83
7506 8749 0.878523 CAACCGTGCTTCTCGTGGAA 60.879 55.000 0.00 0.00 0.00 3.53
7507 8750 1.300620 CAACCGTGCTTCTCGTGGA 60.301 57.895 0.00 0.00 0.00 4.02
7508 8751 1.594293 ACAACCGTGCTTCTCGTGG 60.594 57.895 0.00 0.00 0.00 4.94
7509 8752 1.564622 CACAACCGTGCTTCTCGTG 59.435 57.895 0.00 0.00 36.06 4.35
7510 8753 4.027755 CACAACCGTGCTTCTCGT 57.972 55.556 0.00 0.00 36.06 4.18
7518 8761 2.210116 ACTGTCTAAAGCACAACCGTG 58.790 47.619 0.00 0.00 46.56 4.94
7519 8762 2.159014 TGACTGTCTAAAGCACAACCGT 60.159 45.455 9.51 0.00 0.00 4.83
7520 8763 2.221055 GTGACTGTCTAAAGCACAACCG 59.779 50.000 9.51 0.00 0.00 4.44
7521 8764 2.221055 CGTGACTGTCTAAAGCACAACC 59.779 50.000 9.51 0.00 0.00 3.77
7522 8765 2.221055 CCGTGACTGTCTAAAGCACAAC 59.779 50.000 9.51 0.00 0.00 3.32
7523 8766 2.479837 CCGTGACTGTCTAAAGCACAA 58.520 47.619 9.51 0.00 0.00 3.33
7524 8767 1.872237 GCCGTGACTGTCTAAAGCACA 60.872 52.381 9.51 0.00 0.00 4.57
7525 8768 0.790814 GCCGTGACTGTCTAAAGCAC 59.209 55.000 9.51 0.00 0.00 4.40
7526 8769 0.320421 GGCCGTGACTGTCTAAAGCA 60.320 55.000 9.51 0.00 0.00 3.91
7527 8770 1.352156 CGGCCGTGACTGTCTAAAGC 61.352 60.000 19.50 6.73 0.00 3.51
7528 8771 0.038526 ACGGCCGTGACTGTCTAAAG 60.039 55.000 33.75 0.00 0.00 1.85
7529 8772 2.043625 ACGGCCGTGACTGTCTAAA 58.956 52.632 33.75 0.00 0.00 1.85
7530 8773 3.767816 ACGGCCGTGACTGTCTAA 58.232 55.556 33.75 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.