Multiple sequence alignment - TraesCS1D01G424500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G424500 chr1D 100.000 2426 0 0 1 2426 478821055 478818630 0.000000e+00 4481
1 TraesCS1D01G424500 chr1A 92.941 680 20 11 980 1635 574938541 574937866 0.000000e+00 965
2 TraesCS1D01G424500 chr1A 82.268 970 105 38 1 938 574939474 574938540 0.000000e+00 776
3 TraesCS1D01G424500 chr1B 92.384 604 22 11 989 1572 666826691 666826092 0.000000e+00 839
4 TraesCS1D01G424500 chr1B 85.536 560 33 15 1883 2426 666826096 666825569 2.120000e-150 542
5 TraesCS1D01G424500 chr1B 83.333 462 43 21 501 938 666827144 666826693 1.750000e-106 396


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G424500 chr1D 478818630 478821055 2425 True 4481.000000 4481 100.000000 1 2426 1 chr1D.!!$R1 2425
1 TraesCS1D01G424500 chr1A 574937866 574939474 1608 True 870.500000 965 87.604500 1 1635 2 chr1A.!!$R1 1634
2 TraesCS1D01G424500 chr1B 666825569 666827144 1575 True 592.333333 839 87.084333 501 2426 3 chr1B.!!$R1 1925

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
986 1039 0.185901 AGCAAGGAAGGCCACAAGAA 59.814 50.0 5.01 0.0 36.29 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2196 2282 0.309922 ACTCTGACCGTACGTGTGTG 59.69 55.0 15.21 0.29 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 148 7.806409 TCCACATACATTATCAGGAAACATG 57.194 36.000 0.00 0.00 0.00 3.21
150 151 7.255695 CCACATACATTATCAGGAAACATGCAT 60.256 37.037 0.00 0.00 0.00 3.96
252 253 7.846485 ACATAACATTTTTAAACGCCACAAAG 58.154 30.769 0.00 0.00 0.00 2.77
256 257 7.546778 ACATTTTTAAACGCCACAAAGATTT 57.453 28.000 0.00 0.00 0.00 2.17
258 259 8.454894 ACATTTTTAAACGCCACAAAGATTTTT 58.545 25.926 0.00 0.00 0.00 1.94
293 295 4.412207 GGTAATGTTTCCATCAAAGCGAC 58.588 43.478 0.00 0.00 0.00 5.19
294 296 2.900122 ATGTTTCCATCAAAGCGACG 57.100 45.000 0.00 0.00 0.00 5.12
299 301 1.428448 TCCATCAAAGCGACGTTCAG 58.572 50.000 0.00 0.00 0.00 3.02
304 306 3.313274 TCAAAGCGACGTTCAGTTTTC 57.687 42.857 0.00 0.00 0.00 2.29
309 311 2.046313 GCGACGTTCAGTTTTCGAGTA 58.954 47.619 0.00 0.00 0.00 2.59
313 315 3.650139 ACGTTCAGTTTTCGAGTAGCAT 58.350 40.909 0.00 0.00 0.00 3.79
315 317 3.428870 CGTTCAGTTTTCGAGTAGCATGT 59.571 43.478 0.00 0.00 0.00 3.21
316 318 4.084537 CGTTCAGTTTTCGAGTAGCATGTT 60.085 41.667 0.00 0.00 0.00 2.71
318 320 6.183360 CGTTCAGTTTTCGAGTAGCATGTTAT 60.183 38.462 0.00 0.00 0.00 1.89
320 322 8.818057 GTTCAGTTTTCGAGTAGCATGTTATAT 58.182 33.333 0.00 0.00 0.00 0.86
467 472 7.009999 CACATTTTGTAAAGCTGTGCTAACAAA 59.990 33.333 19.73 19.73 44.77 2.83
469 474 6.879188 TTTGTAAAGCTGTGCTAACAAAAC 57.121 33.333 20.60 5.43 44.17 2.43
470 475 5.828299 TGTAAAGCTGTGCTAACAAAACT 57.172 34.783 0.00 0.00 38.25 2.66
630 644 0.956633 AAGTCACGTTCTGTAGGCGA 59.043 50.000 0.00 0.00 0.00 5.54
631 645 0.522180 AGTCACGTTCTGTAGGCGAG 59.478 55.000 0.00 0.00 0.00 5.03
632 646 0.456312 GTCACGTTCTGTAGGCGAGG 60.456 60.000 0.00 0.00 0.00 4.63
634 648 2.579787 CGTTCTGTAGGCGAGGCG 60.580 66.667 0.00 0.00 0.00 5.52
636 650 1.805945 GTTCTGTAGGCGAGGCGTG 60.806 63.158 0.00 0.00 0.00 5.34
637 651 3.642778 TTCTGTAGGCGAGGCGTGC 62.643 63.158 0.00 0.00 0.00 5.34
654 668 4.208686 CGCCTCGCAGTAGGACCC 62.209 72.222 1.03 0.00 39.15 4.46
655 669 3.851128 GCCTCGCAGTAGGACCCC 61.851 72.222 1.03 0.00 39.15 4.95
656 670 2.363795 CCTCGCAGTAGGACCCCA 60.364 66.667 0.00 0.00 39.15 4.96
657 671 1.987855 CCTCGCAGTAGGACCCCAA 60.988 63.158 0.00 0.00 39.15 4.12
658 672 1.218316 CTCGCAGTAGGACCCCAAC 59.782 63.158 0.00 0.00 0.00 3.77
659 673 2.125673 CGCAGTAGGACCCCAACG 60.126 66.667 0.00 0.00 0.00 4.10
660 674 2.267961 GCAGTAGGACCCCAACGG 59.732 66.667 0.00 0.00 37.81 4.44
668 682 4.941309 ACCCCAACGGCGGTGAAC 62.941 66.667 29.07 0.00 33.26 3.18
717 761 2.104331 CGCGCCCGTCTAGATGTT 59.896 61.111 11.03 0.00 0.00 2.71
800 844 2.021457 GCACTCTCTAGACTCCTCCAC 58.979 57.143 0.00 0.00 0.00 4.02
910 962 2.089349 GCGCGACTCAGAGTTCCAC 61.089 63.158 12.10 0.00 0.00 4.02
912 964 0.730834 CGCGACTCAGAGTTCCACAG 60.731 60.000 0.00 0.00 0.00 3.66
914 967 1.667467 GCGACTCAGAGTTCCACAGAC 60.667 57.143 4.05 0.00 0.00 3.51
929 982 1.202698 ACAGACCAACAACAGGAGAGC 60.203 52.381 0.00 0.00 0.00 4.09
930 983 1.071385 CAGACCAACAACAGGAGAGCT 59.929 52.381 0.00 0.00 0.00 4.09
931 984 1.346068 AGACCAACAACAGGAGAGCTC 59.654 52.381 5.27 5.27 0.00 4.09
945 998 3.488573 GCTCAGCTCAGCTCAAGC 58.511 61.111 13.51 13.51 36.40 4.01
946 999 1.375652 GCTCAGCTCAGCTCAAGCA 60.376 57.895 20.98 0.14 41.37 3.91
947 1000 1.363145 GCTCAGCTCAGCTCAAGCAG 61.363 60.000 20.98 11.02 41.37 4.24
974 1027 3.691342 CCGACCGACCAGCAAGGA 61.691 66.667 1.83 0.00 41.22 3.36
975 1028 2.342279 CGACCGACCAGCAAGGAA 59.658 61.111 1.83 0.00 41.22 3.36
976 1029 1.738099 CGACCGACCAGCAAGGAAG 60.738 63.158 1.83 0.00 41.22 3.46
977 1030 1.376037 GACCGACCAGCAAGGAAGG 60.376 63.158 1.83 7.10 41.22 3.46
978 1031 2.747855 CCGACCAGCAAGGAAGGC 60.748 66.667 1.83 0.00 41.22 4.35
979 1032 2.747855 CGACCAGCAAGGAAGGCC 60.748 66.667 0.00 0.00 41.22 5.19
980 1033 2.436109 GACCAGCAAGGAAGGCCA 59.564 61.111 5.01 0.00 41.22 5.36
981 1034 1.973812 GACCAGCAAGGAAGGCCAC 60.974 63.158 5.01 0.00 41.22 5.01
982 1035 2.115910 CCAGCAAGGAAGGCCACA 59.884 61.111 5.01 0.00 41.22 4.17
983 1036 1.531365 CCAGCAAGGAAGGCCACAA 60.531 57.895 5.01 0.00 41.22 3.33
984 1037 1.530013 CCAGCAAGGAAGGCCACAAG 61.530 60.000 5.01 0.00 41.22 3.16
985 1038 0.538057 CAGCAAGGAAGGCCACAAGA 60.538 55.000 5.01 0.00 36.29 3.02
986 1039 0.185901 AGCAAGGAAGGCCACAAGAA 59.814 50.000 5.01 0.00 36.29 2.52
987 1040 0.600057 GCAAGGAAGGCCACAAGAAG 59.400 55.000 5.01 0.00 36.29 2.85
1446 1518 2.471607 CTGATCGTGTGCGTGTGC 59.528 61.111 0.00 0.00 43.20 4.57
1590 1676 3.581770 TCTGTCAGATCATCATCATCCCC 59.418 47.826 0.00 0.00 0.00 4.81
1593 1679 2.910977 TCAGATCATCATCATCCCCTGG 59.089 50.000 0.00 0.00 0.00 4.45
1599 1685 3.136443 TCATCATCATCCCCTGGTGTTAC 59.864 47.826 0.00 0.00 37.26 2.50
1612 1698 3.670625 TGGTGTTACCTTATGTGTCAGC 58.329 45.455 0.00 0.00 39.58 4.26
1628 1714 3.080319 GTCAGCAGCTTTCCTCTGATTT 58.920 45.455 0.00 0.00 37.81 2.17
1630 1716 3.008813 TCAGCAGCTTTCCTCTGATTTCT 59.991 43.478 0.00 0.00 33.54 2.52
1635 1721 5.821995 GCAGCTTTCCTCTGATTTCTTCTAT 59.178 40.000 0.00 0.00 33.54 1.98
1636 1722 6.989169 GCAGCTTTCCTCTGATTTCTTCTATA 59.011 38.462 0.00 0.00 33.54 1.31
1637 1723 7.042119 GCAGCTTTCCTCTGATTTCTTCTATAC 60.042 40.741 0.00 0.00 33.54 1.47
1638 1724 7.984050 CAGCTTTCCTCTGATTTCTTCTATACA 59.016 37.037 0.00 0.00 33.54 2.29
1639 1725 8.713036 AGCTTTCCTCTGATTTCTTCTATACAT 58.287 33.333 0.00 0.00 0.00 2.29
1640 1726 8.772705 GCTTTCCTCTGATTTCTTCTATACATG 58.227 37.037 0.00 0.00 0.00 3.21
1641 1727 9.270640 CTTTCCTCTGATTTCTTCTATACATGG 57.729 37.037 0.00 0.00 0.00 3.66
1642 1728 7.921041 TCCTCTGATTTCTTCTATACATGGT 57.079 36.000 0.00 0.00 0.00 3.55
1643 1729 9.434275 TTCCTCTGATTTCTTCTATACATGGTA 57.566 33.333 0.00 0.00 0.00 3.25
1644 1730 9.434275 TCCTCTGATTTCTTCTATACATGGTAA 57.566 33.333 0.00 0.00 0.00 2.85
1649 1735 9.625747 TGATTTCTTCTATACATGGTAATTGCA 57.374 29.630 0.00 0.00 0.00 4.08
1652 1738 8.800370 TTCTTCTATACATGGTAATTGCAACA 57.200 30.769 0.00 0.00 0.00 3.33
1653 1739 8.437360 TCTTCTATACATGGTAATTGCAACAG 57.563 34.615 0.00 0.00 0.00 3.16
1654 1740 7.498900 TCTTCTATACATGGTAATTGCAACAGG 59.501 37.037 0.00 0.00 0.00 4.00
1655 1741 4.654091 ATACATGGTAATTGCAACAGGC 57.346 40.909 0.00 0.00 45.13 4.85
1656 1742 1.550072 ACATGGTAATTGCAACAGGCC 59.450 47.619 0.00 0.00 43.89 5.19
1657 1743 1.549620 CATGGTAATTGCAACAGGCCA 59.450 47.619 5.01 8.79 43.89 5.36
1658 1744 1.709578 TGGTAATTGCAACAGGCCAA 58.290 45.000 5.01 0.00 43.89 4.52
1659 1745 2.042464 TGGTAATTGCAACAGGCCAAA 58.958 42.857 5.01 0.00 43.89 3.28
1660 1746 2.636893 TGGTAATTGCAACAGGCCAAAT 59.363 40.909 5.01 0.00 43.89 2.32
1661 1747 3.834813 TGGTAATTGCAACAGGCCAAATA 59.165 39.130 5.01 0.00 43.89 1.40
1662 1748 4.284490 TGGTAATTGCAACAGGCCAAATAA 59.716 37.500 5.01 0.00 43.89 1.40
1663 1749 5.221722 TGGTAATTGCAACAGGCCAAATAAA 60.222 36.000 5.01 0.00 43.89 1.40
1664 1750 5.879777 GGTAATTGCAACAGGCCAAATAAAT 59.120 36.000 5.01 0.00 43.89 1.40
1665 1751 7.044798 GGTAATTGCAACAGGCCAAATAAATA 58.955 34.615 5.01 0.00 43.89 1.40
1666 1752 7.550906 GGTAATTGCAACAGGCCAAATAAATAA 59.449 33.333 5.01 0.00 43.89 1.40
1667 1753 7.992754 AATTGCAACAGGCCAAATAAATAAA 57.007 28.000 5.01 0.00 43.89 1.40
1668 1754 8.578448 AATTGCAACAGGCCAAATAAATAAAT 57.422 26.923 5.01 0.00 43.89 1.40
1669 1755 7.992754 TTGCAACAGGCCAAATAAATAAATT 57.007 28.000 5.01 0.00 43.89 1.82
1670 1756 7.375106 TGCAACAGGCCAAATAAATAAATTG 57.625 32.000 5.01 0.00 43.89 2.32
1671 1757 6.128063 TGCAACAGGCCAAATAAATAAATTGC 60.128 34.615 5.01 4.59 43.89 3.56
1672 1758 6.128063 GCAACAGGCCAAATAAATAAATTGCA 60.128 34.615 5.01 0.00 37.92 4.08
1673 1759 7.574592 GCAACAGGCCAAATAAATAAATTGCAA 60.575 33.333 5.01 0.00 37.92 4.08
1674 1760 7.992754 ACAGGCCAAATAAATAAATTGCAAA 57.007 28.000 5.01 0.00 0.00 3.68
1675 1761 8.042944 ACAGGCCAAATAAATAAATTGCAAAG 57.957 30.769 5.01 0.00 0.00 2.77
1676 1762 7.665145 ACAGGCCAAATAAATAAATTGCAAAGT 59.335 29.630 5.01 0.00 0.00 2.66
1677 1763 9.160496 CAGGCCAAATAAATAAATTGCAAAGTA 57.840 29.630 5.01 0.00 0.00 2.24
1678 1764 9.732130 AGGCCAAATAAATAAATTGCAAAGTAA 57.268 25.926 5.01 0.00 0.00 2.24
1695 1781 9.462174 TGCAAAGTAATAACAGTGAGAAAATTG 57.538 29.630 0.00 0.00 0.00 2.32
1696 1782 8.915654 GCAAAGTAATAACAGTGAGAAAATTGG 58.084 33.333 0.00 0.00 0.00 3.16
1697 1783 9.410556 CAAAGTAATAACAGTGAGAAAATTGGG 57.589 33.333 0.00 0.00 0.00 4.12
1698 1784 8.706322 AAGTAATAACAGTGAGAAAATTGGGT 57.294 30.769 0.00 0.00 0.00 4.51
1699 1785 8.110860 AGTAATAACAGTGAGAAAATTGGGTG 57.889 34.615 0.00 0.00 0.00 4.61
1700 1786 6.976934 AATAACAGTGAGAAAATTGGGTGT 57.023 33.333 0.00 0.00 0.00 4.16
1701 1787 4.654091 AACAGTGAGAAAATTGGGTGTG 57.346 40.909 0.00 0.00 0.00 3.82
1702 1788 2.362077 ACAGTGAGAAAATTGGGTGTGC 59.638 45.455 0.00 0.00 0.00 4.57
1703 1789 2.361757 CAGTGAGAAAATTGGGTGTGCA 59.638 45.455 0.00 0.00 0.00 4.57
1704 1790 3.030291 AGTGAGAAAATTGGGTGTGCAA 58.970 40.909 0.00 0.00 0.00 4.08
1705 1791 3.068590 AGTGAGAAAATTGGGTGTGCAAG 59.931 43.478 0.00 0.00 0.00 4.01
1706 1792 3.068024 GTGAGAAAATTGGGTGTGCAAGA 59.932 43.478 0.00 0.00 0.00 3.02
1707 1793 3.068024 TGAGAAAATTGGGTGTGCAAGAC 59.932 43.478 0.00 0.00 0.00 3.01
1708 1794 3.030291 AGAAAATTGGGTGTGCAAGACA 58.970 40.909 0.00 0.00 0.00 3.41
1709 1795 3.642848 AGAAAATTGGGTGTGCAAGACAT 59.357 39.130 0.00 0.00 36.78 3.06
1710 1796 4.101430 AGAAAATTGGGTGTGCAAGACATT 59.899 37.500 0.00 0.00 36.78 2.71
1711 1797 4.420522 AAATTGGGTGTGCAAGACATTT 57.579 36.364 0.00 0.00 36.78 2.32
1712 1798 4.420522 AATTGGGTGTGCAAGACATTTT 57.579 36.364 0.00 0.00 36.78 1.82
1713 1799 3.451141 TTGGGTGTGCAAGACATTTTC 57.549 42.857 0.00 0.00 36.78 2.29
1714 1800 1.336440 TGGGTGTGCAAGACATTTTCG 59.664 47.619 0.00 0.00 36.78 3.46
1715 1801 1.606668 GGGTGTGCAAGACATTTTCGA 59.393 47.619 0.00 0.00 36.78 3.71
1716 1802 2.228822 GGGTGTGCAAGACATTTTCGAT 59.771 45.455 0.00 0.00 36.78 3.59
1717 1803 3.492313 GGTGTGCAAGACATTTTCGATC 58.508 45.455 0.00 0.00 36.78 3.69
1718 1804 3.058293 GGTGTGCAAGACATTTTCGATCA 60.058 43.478 0.00 0.00 36.78 2.92
1719 1805 4.153986 GTGTGCAAGACATTTTCGATCAG 58.846 43.478 0.00 0.00 36.78 2.90
1720 1806 4.064388 TGTGCAAGACATTTTCGATCAGA 58.936 39.130 0.00 0.00 0.00 3.27
1721 1807 4.696877 TGTGCAAGACATTTTCGATCAGAT 59.303 37.500 0.00 0.00 0.00 2.90
1722 1808 5.163824 TGTGCAAGACATTTTCGATCAGATC 60.164 40.000 0.00 0.00 0.00 2.75
1723 1809 4.937015 TGCAAGACATTTTCGATCAGATCA 59.063 37.500 11.12 0.00 0.00 2.92
1724 1810 5.412286 TGCAAGACATTTTCGATCAGATCAA 59.588 36.000 11.12 1.80 0.00 2.57
1725 1811 5.964168 GCAAGACATTTTCGATCAGATCAAG 59.036 40.000 11.12 0.00 0.00 3.02
1726 1812 6.183360 GCAAGACATTTTCGATCAGATCAAGA 60.183 38.462 11.12 0.00 0.00 3.02
1727 1813 7.624974 GCAAGACATTTTCGATCAGATCAAGAA 60.625 37.037 11.12 4.19 0.00 2.52
1728 1814 7.912056 AGACATTTTCGATCAGATCAAGAAA 57.088 32.000 11.12 9.67 0.00 2.52
1729 1815 8.327941 AGACATTTTCGATCAGATCAAGAAAA 57.672 30.769 20.00 20.00 42.50 2.29
1730 1816 8.954350 AGACATTTTCGATCAGATCAAGAAAAT 58.046 29.630 21.70 21.70 46.21 1.82
1732 1818 9.994432 ACATTTTCGATCAGATCAAGAAAATAC 57.006 29.630 24.32 0.00 44.61 1.89
1733 1819 9.151752 CATTTTCGATCAGATCAAGAAAATACG 57.848 33.333 24.32 16.15 44.61 3.06
1734 1820 7.827819 TTTCGATCAGATCAAGAAAATACGT 57.172 32.000 11.12 0.00 0.00 3.57
1735 1821 6.812481 TCGATCAGATCAAGAAAATACGTG 57.188 37.500 11.12 0.00 0.00 4.49
1736 1822 5.232202 TCGATCAGATCAAGAAAATACGTGC 59.768 40.000 11.12 0.00 0.00 5.34
1737 1823 5.005682 CGATCAGATCAAGAAAATACGTGCA 59.994 40.000 11.12 0.00 0.00 4.57
1738 1824 5.784750 TCAGATCAAGAAAATACGTGCAG 57.215 39.130 0.00 0.00 0.00 4.41
1739 1825 5.237815 TCAGATCAAGAAAATACGTGCAGT 58.762 37.500 0.00 0.00 0.00 4.40
1740 1826 5.120674 TCAGATCAAGAAAATACGTGCAGTG 59.879 40.000 0.00 0.00 0.00 3.66
1741 1827 3.536158 TCAAGAAAATACGTGCAGTGC 57.464 42.857 8.58 8.58 0.00 4.40
1742 1828 2.875317 TCAAGAAAATACGTGCAGTGCA 59.125 40.909 15.37 15.37 35.60 4.57
1743 1829 3.058983 TCAAGAAAATACGTGCAGTGCAG 60.059 43.478 20.42 14.97 40.08 4.41
1744 1830 2.766313 AGAAAATACGTGCAGTGCAGA 58.234 42.857 20.42 7.45 40.08 4.26
1745 1831 3.138304 AGAAAATACGTGCAGTGCAGAA 58.862 40.909 20.42 7.28 40.08 3.02
1746 1832 3.187227 AGAAAATACGTGCAGTGCAGAAG 59.813 43.478 20.42 15.35 40.08 2.85
1747 1833 0.798776 AATACGTGCAGTGCAGAAGC 59.201 50.000 20.42 5.63 40.08 3.86
1758 1844 2.851798 GCAGAAGCAGAGGAACCAG 58.148 57.895 0.00 0.00 41.58 4.00
1759 1845 0.322975 GCAGAAGCAGAGGAACCAGA 59.677 55.000 0.00 0.00 41.58 3.86
1760 1846 1.065564 GCAGAAGCAGAGGAACCAGAT 60.066 52.381 0.00 0.00 41.58 2.90
1761 1847 2.617532 GCAGAAGCAGAGGAACCAGATT 60.618 50.000 0.00 0.00 41.58 2.40
1762 1848 3.008330 CAGAAGCAGAGGAACCAGATTG 58.992 50.000 0.00 0.00 0.00 2.67
1763 1849 1.742268 GAAGCAGAGGAACCAGATTGC 59.258 52.381 0.00 0.00 0.00 3.56
1764 1850 0.990374 AGCAGAGGAACCAGATTGCT 59.010 50.000 0.00 0.00 42.62 3.91
1765 1851 1.093159 GCAGAGGAACCAGATTGCTG 58.907 55.000 0.00 0.00 39.46 4.41
1766 1852 1.339438 GCAGAGGAACCAGATTGCTGA 60.339 52.381 0.00 0.00 45.17 4.26
1767 1853 2.354259 CAGAGGAACCAGATTGCTGAC 58.646 52.381 0.00 0.00 45.17 3.51
1768 1854 1.280421 AGAGGAACCAGATTGCTGACC 59.720 52.381 0.00 0.00 45.17 4.02
1769 1855 1.280421 GAGGAACCAGATTGCTGACCT 59.720 52.381 0.00 0.00 45.17 3.85
1770 1856 1.004044 AGGAACCAGATTGCTGACCTG 59.996 52.381 0.00 0.00 45.17 4.00
1771 1857 1.003580 GGAACCAGATTGCTGACCTGA 59.996 52.381 0.00 0.00 45.17 3.86
1772 1858 2.553028 GGAACCAGATTGCTGACCTGAA 60.553 50.000 0.00 0.00 45.17 3.02
1773 1859 3.350833 GAACCAGATTGCTGACCTGAAT 58.649 45.455 0.00 0.00 45.17 2.57
1774 1860 4.517285 GAACCAGATTGCTGACCTGAATA 58.483 43.478 0.00 0.00 45.17 1.75
1775 1861 4.785346 ACCAGATTGCTGACCTGAATAT 57.215 40.909 0.00 0.00 45.17 1.28
1776 1862 4.458397 ACCAGATTGCTGACCTGAATATG 58.542 43.478 0.00 0.00 45.17 1.78
1777 1863 4.164796 ACCAGATTGCTGACCTGAATATGA 59.835 41.667 0.00 0.00 45.17 2.15
1778 1864 5.163120 ACCAGATTGCTGACCTGAATATGAT 60.163 40.000 0.00 0.00 45.17 2.45
1779 1865 6.043590 ACCAGATTGCTGACCTGAATATGATA 59.956 38.462 0.00 0.00 45.17 2.15
1780 1866 7.110810 CCAGATTGCTGACCTGAATATGATAT 58.889 38.462 0.00 0.00 45.17 1.63
1781 1867 7.065923 CCAGATTGCTGACCTGAATATGATATG 59.934 40.741 0.00 0.00 45.17 1.78
1782 1868 7.822822 CAGATTGCTGACCTGAATATGATATGA 59.177 37.037 0.00 0.00 45.17 2.15
1783 1869 8.380867 AGATTGCTGACCTGAATATGATATGAA 58.619 33.333 0.00 0.00 0.00 2.57
1784 1870 9.175312 GATTGCTGACCTGAATATGATATGAAT 57.825 33.333 0.00 0.00 0.00 2.57
1786 1872 9.662947 TTGCTGACCTGAATATGATATGAATAG 57.337 33.333 0.00 0.00 0.00 1.73
1787 1873 8.262933 TGCTGACCTGAATATGATATGAATAGG 58.737 37.037 0.00 0.00 0.00 2.57
1788 1874 8.481314 GCTGACCTGAATATGATATGAATAGGA 58.519 37.037 9.88 0.00 0.00 2.94
1790 1876 8.985922 TGACCTGAATATGATATGAATAGGAGG 58.014 37.037 9.88 0.00 0.00 4.30
1791 1877 9.206690 GACCTGAATATGATATGAATAGGAGGA 57.793 37.037 9.88 0.00 0.00 3.71
1792 1878 9.741198 ACCTGAATATGATATGAATAGGAGGAT 57.259 33.333 9.88 0.00 0.00 3.24
1793 1879 9.999660 CCTGAATATGATATGAATAGGAGGATG 57.000 37.037 0.00 0.00 0.00 3.51
1800 1886 8.676397 TGATATGAATAGGAGGATGATTCACT 57.324 34.615 0.00 0.00 41.17 3.41
1801 1887 9.109246 TGATATGAATAGGAGGATGATTCACTT 57.891 33.333 0.00 0.00 41.17 3.16
1802 1888 9.381033 GATATGAATAGGAGGATGATTCACTTG 57.619 37.037 0.00 0.00 41.17 3.16
1803 1889 6.566079 TGAATAGGAGGATGATTCACTTGT 57.434 37.500 0.00 0.00 35.26 3.16
1804 1890 7.675161 TGAATAGGAGGATGATTCACTTGTA 57.325 36.000 0.00 0.00 35.26 2.41
1805 1891 8.089625 TGAATAGGAGGATGATTCACTTGTAA 57.910 34.615 0.00 0.00 35.26 2.41
1806 1892 7.987458 TGAATAGGAGGATGATTCACTTGTAAC 59.013 37.037 0.00 0.00 35.26 2.50
1807 1893 4.759782 AGGAGGATGATTCACTTGTAACG 58.240 43.478 0.00 0.00 0.00 3.18
1808 1894 4.223032 AGGAGGATGATTCACTTGTAACGT 59.777 41.667 0.00 0.00 0.00 3.99
1809 1895 5.421056 AGGAGGATGATTCACTTGTAACGTA 59.579 40.000 0.00 0.00 0.00 3.57
1810 1896 6.098409 AGGAGGATGATTCACTTGTAACGTAT 59.902 38.462 0.00 0.00 0.00 3.06
1811 1897 7.287005 AGGAGGATGATTCACTTGTAACGTATA 59.713 37.037 0.00 0.00 0.00 1.47
1812 1898 7.924412 GGAGGATGATTCACTTGTAACGTATAA 59.076 37.037 0.00 0.00 0.00 0.98
1813 1899 8.873215 AGGATGATTCACTTGTAACGTATAAG 57.127 34.615 0.00 0.00 33.68 1.73
1814 1900 8.692710 AGGATGATTCACTTGTAACGTATAAGA 58.307 33.333 11.76 0.00 32.11 2.10
1815 1901 9.477484 GGATGATTCACTTGTAACGTATAAGAT 57.523 33.333 11.76 0.00 32.11 2.40
1818 1904 8.600625 TGATTCACTTGTAACGTATAAGATTGC 58.399 33.333 11.76 0.00 32.11 3.56
1819 1905 8.718102 ATTCACTTGTAACGTATAAGATTGCT 57.282 30.769 11.76 0.00 32.11 3.91
1820 1906 7.520119 TCACTTGTAACGTATAAGATTGCTG 57.480 36.000 11.76 2.18 32.11 4.41
1821 1907 7.317390 TCACTTGTAACGTATAAGATTGCTGA 58.683 34.615 11.76 4.01 32.11 4.26
1822 1908 7.274904 TCACTTGTAACGTATAAGATTGCTGAC 59.725 37.037 11.76 0.00 32.11 3.51
1823 1909 6.534079 ACTTGTAACGTATAAGATTGCTGACC 59.466 38.462 11.76 0.00 32.11 4.02
1824 1910 6.216801 TGTAACGTATAAGATTGCTGACCT 57.783 37.500 0.00 0.00 0.00 3.85
1825 1911 6.040247 TGTAACGTATAAGATTGCTGACCTG 58.960 40.000 0.00 0.00 0.00 4.00
1826 1912 5.339008 AACGTATAAGATTGCTGACCTGA 57.661 39.130 0.00 0.00 0.00 3.86
1827 1913 5.339008 ACGTATAAGATTGCTGACCTGAA 57.661 39.130 0.00 0.00 0.00 3.02
1828 1914 5.918608 ACGTATAAGATTGCTGACCTGAAT 58.081 37.500 0.00 0.00 0.00 2.57
1829 1915 7.050970 ACGTATAAGATTGCTGACCTGAATA 57.949 36.000 0.00 0.00 0.00 1.75
1830 1916 7.671302 ACGTATAAGATTGCTGACCTGAATAT 58.329 34.615 0.00 0.00 0.00 1.28
1831 1917 7.600375 ACGTATAAGATTGCTGACCTGAATATG 59.400 37.037 0.00 0.00 0.00 1.78
1832 1918 7.814587 CGTATAAGATTGCTGACCTGAATATGA 59.185 37.037 0.00 0.00 0.00 2.15
1833 1919 9.494271 GTATAAGATTGCTGACCTGAATATGAA 57.506 33.333 0.00 0.00 0.00 2.57
1836 1922 8.618702 AAGATTGCTGACCTGAATATGAATAG 57.381 34.615 0.00 0.00 0.00 1.73
1837 1923 7.166851 AGATTGCTGACCTGAATATGAATAGG 58.833 38.462 0.00 0.00 36.39 2.57
1838 1924 6.499106 TTGCTGACCTGAATATGAATAGGA 57.501 37.500 0.00 0.00 34.42 2.94
1839 1925 6.106648 TGCTGACCTGAATATGAATAGGAG 57.893 41.667 0.00 0.00 34.42 3.69
1840 1926 5.012458 TGCTGACCTGAATATGAATAGGAGG 59.988 44.000 0.00 0.00 34.42 4.30
1841 1927 5.247110 GCTGACCTGAATATGAATAGGAGGA 59.753 44.000 0.00 0.00 34.42 3.71
1842 1928 6.672266 TGACCTGAATATGAATAGGAGGAC 57.328 41.667 0.00 0.00 34.42 3.85
1843 1929 6.385443 TGACCTGAATATGAATAGGAGGACT 58.615 40.000 0.00 0.00 34.42 3.85
1844 1930 6.846505 TGACCTGAATATGAATAGGAGGACTT 59.153 38.462 0.00 0.00 34.42 3.01
1845 1931 7.072263 ACCTGAATATGAATAGGAGGACTTG 57.928 40.000 0.00 0.00 34.42 3.16
1846 1932 6.617371 ACCTGAATATGAATAGGAGGACTTGT 59.383 38.462 0.00 0.00 34.42 3.16
1847 1933 7.789831 ACCTGAATATGAATAGGAGGACTTGTA 59.210 37.037 0.00 0.00 34.42 2.41
1848 1934 8.651389 CCTGAATATGAATAGGAGGACTTGTAA 58.349 37.037 0.00 0.00 31.91 2.41
1849 1935 9.482627 CTGAATATGAATAGGAGGACTTGTAAC 57.517 37.037 0.00 0.00 0.00 2.50
1850 1936 8.141909 TGAATATGAATAGGAGGACTTGTAACG 58.858 37.037 0.00 0.00 0.00 3.18
1851 1937 5.934402 ATGAATAGGAGGACTTGTAACGT 57.066 39.130 0.00 0.00 0.00 3.99
1852 1938 8.701908 ATATGAATAGGAGGACTTGTAACGTA 57.298 34.615 0.00 0.00 0.00 3.57
1853 1939 7.598759 ATGAATAGGAGGACTTGTAACGTAT 57.401 36.000 0.00 0.00 0.00 3.06
1854 1940 6.802608 TGAATAGGAGGACTTGTAACGTATG 58.197 40.000 0.00 0.00 0.00 2.39
1855 1941 6.604396 TGAATAGGAGGACTTGTAACGTATGA 59.396 38.462 0.00 0.00 0.00 2.15
1856 1942 4.715527 AGGAGGACTTGTAACGTATGAC 57.284 45.455 0.00 0.00 0.00 3.06
1857 1943 4.342359 AGGAGGACTTGTAACGTATGACT 58.658 43.478 0.00 0.00 0.00 3.41
1858 1944 4.771054 AGGAGGACTTGTAACGTATGACTT 59.229 41.667 0.00 0.00 0.00 3.01
1859 1945 4.863131 GGAGGACTTGTAACGTATGACTTG 59.137 45.833 0.00 0.00 0.00 3.16
1860 1946 5.464030 AGGACTTGTAACGTATGACTTGT 57.536 39.130 0.00 0.00 0.00 3.16
1861 1947 5.227908 AGGACTTGTAACGTATGACTTGTG 58.772 41.667 0.00 0.00 0.00 3.33
1862 1948 4.986659 GGACTTGTAACGTATGACTTGTGT 59.013 41.667 0.00 0.00 0.00 3.72
1863 1949 5.118203 GGACTTGTAACGTATGACTTGTGTC 59.882 44.000 0.00 0.00 43.20 3.67
1864 1950 5.839621 ACTTGTAACGTATGACTTGTGTCT 58.160 37.500 0.00 0.00 43.29 3.41
1865 1951 5.690409 ACTTGTAACGTATGACTTGTGTCTG 59.310 40.000 0.00 0.00 43.29 3.51
1866 1952 3.985279 TGTAACGTATGACTTGTGTCTGC 59.015 43.478 0.00 0.00 43.29 4.26
1867 1953 2.812358 ACGTATGACTTGTGTCTGCA 57.188 45.000 0.00 0.00 43.29 4.41
1868 1954 2.677199 ACGTATGACTTGTGTCTGCAG 58.323 47.619 7.63 7.63 43.29 4.41
1869 1955 1.995484 CGTATGACTTGTGTCTGCAGG 59.005 52.381 15.13 0.00 43.29 4.85
1870 1956 2.352715 CGTATGACTTGTGTCTGCAGGA 60.353 50.000 15.13 0.00 43.29 3.86
1871 1957 2.936919 ATGACTTGTGTCTGCAGGAA 57.063 45.000 15.13 0.00 43.29 3.36
1872 1958 1.953559 TGACTTGTGTCTGCAGGAAC 58.046 50.000 15.13 12.94 43.29 3.62
1873 1959 1.209261 TGACTTGTGTCTGCAGGAACA 59.791 47.619 15.13 15.46 43.29 3.18
1874 1960 1.869767 GACTTGTGTCTGCAGGAACAG 59.130 52.381 15.13 13.53 39.94 3.16
1875 1961 1.486310 ACTTGTGTCTGCAGGAACAGA 59.514 47.619 15.13 7.62 44.32 3.41
1876 1962 2.141517 CTTGTGTCTGCAGGAACAGAG 58.858 52.381 15.13 13.37 47.00 3.35
1877 1963 1.123077 TGTGTCTGCAGGAACAGAGT 58.877 50.000 15.13 0.00 47.00 3.24
1878 1964 1.486310 TGTGTCTGCAGGAACAGAGTT 59.514 47.619 15.13 0.00 47.00 3.01
1879 1965 2.092968 TGTGTCTGCAGGAACAGAGTTT 60.093 45.455 15.13 0.00 47.00 2.66
1880 1966 2.289002 GTGTCTGCAGGAACAGAGTTTG 59.711 50.000 15.13 0.00 47.00 2.93
1881 1967 2.092968 TGTCTGCAGGAACAGAGTTTGT 60.093 45.455 15.13 0.00 47.00 2.83
1913 1999 3.565307 TCCTCCACTGATTTTGTGCTTT 58.435 40.909 0.00 0.00 34.38 3.51
1928 2014 4.973168 TGTGCTTTGATGTCTTAAGGAGT 58.027 39.130 1.85 0.00 0.00 3.85
1933 2019 5.121454 GCTTTGATGTCTTAAGGAGTGAGTG 59.879 44.000 1.85 0.00 0.00 3.51
1964 2050 4.193334 GATTTCAAGCGGCGGCCC 62.193 66.667 14.55 6.41 41.24 5.80
1975 2061 4.382320 GCGGCCCCAACACTACGA 62.382 66.667 0.00 0.00 0.00 3.43
1979 2065 2.288025 GCCCCAACACTACGAGGGA 61.288 63.158 0.00 0.00 44.30 4.20
1981 2067 0.909623 CCCCAACACTACGAGGGAAT 59.090 55.000 0.00 0.00 44.30 3.01
1982 2068 1.406887 CCCCAACACTACGAGGGAATG 60.407 57.143 0.00 0.00 44.30 2.67
1985 2071 1.278127 CAACACTACGAGGGAATGGGT 59.722 52.381 0.00 0.00 0.00 4.51
1986 2072 2.498481 CAACACTACGAGGGAATGGGTA 59.502 50.000 0.00 0.00 0.00 3.69
1987 2073 2.823959 ACACTACGAGGGAATGGGTAA 58.176 47.619 0.00 0.00 0.00 2.85
1988 2074 3.381335 ACACTACGAGGGAATGGGTAAT 58.619 45.455 0.00 0.00 0.00 1.89
1989 2075 4.549668 ACACTACGAGGGAATGGGTAATA 58.450 43.478 0.00 0.00 0.00 0.98
1990 2076 4.343239 ACACTACGAGGGAATGGGTAATAC 59.657 45.833 0.00 0.00 0.00 1.89
1991 2077 3.899980 ACTACGAGGGAATGGGTAATACC 59.100 47.826 0.00 0.00 37.60 2.73
1992 2078 3.056201 ACGAGGGAATGGGTAATACCT 57.944 47.619 9.58 0.00 38.64 3.08
1993 2079 4.203342 ACGAGGGAATGGGTAATACCTA 57.797 45.455 9.58 3.28 38.64 3.08
1994 2080 4.559726 ACGAGGGAATGGGTAATACCTAA 58.440 43.478 9.58 0.00 38.64 2.69
1995 2081 4.970640 ACGAGGGAATGGGTAATACCTAAA 59.029 41.667 9.58 0.00 38.64 1.85
1996 2082 5.429435 ACGAGGGAATGGGTAATACCTAAAA 59.571 40.000 9.58 0.00 38.64 1.52
1997 2083 5.995897 CGAGGGAATGGGTAATACCTAAAAG 59.004 44.000 9.58 0.00 38.64 2.27
1998 2084 6.408891 CGAGGGAATGGGTAATACCTAAAAGT 60.409 42.308 9.58 0.00 38.64 2.66
2003 2089 4.591929 TGGGTAATACCTAAAAGTGTGCC 58.408 43.478 9.58 0.00 38.64 5.01
2021 2107 2.020694 GCCAACAGCCAGAGCATACAT 61.021 52.381 0.00 0.00 43.56 2.29
2030 2116 3.683847 GCCAGAGCATACATGGAACTCTT 60.684 47.826 10.44 0.00 35.57 2.85
2031 2117 3.875727 CCAGAGCATACATGGAACTCTTG 59.124 47.826 10.44 4.94 35.57 3.02
2033 2119 4.809958 CAGAGCATACATGGAACTCTTGAG 59.190 45.833 10.44 0.00 35.57 3.02
2041 2127 4.285517 ACATGGAACTCTTGAGTGTCTGAT 59.714 41.667 3.87 0.00 0.00 2.90
2141 2227 9.958180 TGTCTAGGAATGAGATAATTTTGTTCA 57.042 29.630 0.00 0.00 0.00 3.18
2151 2237 9.076781 TGAGATAATTTTGTTCAGAATTCCACA 57.923 29.630 0.65 0.14 0.00 4.17
2153 2239 9.865321 AGATAATTTTGTTCAGAATTCCACATG 57.135 29.630 0.65 0.00 0.00 3.21
2154 2240 9.090692 GATAATTTTGTTCAGAATTCCACATGG 57.909 33.333 0.65 0.00 0.00 3.66
2155 2241 3.940209 TTGTTCAGAATTCCACATGGC 57.060 42.857 0.65 0.00 34.44 4.40
2196 2282 3.136626 AGGTTAACCATATCCACAGAGGC 59.863 47.826 26.26 0.00 38.89 4.70
2197 2283 3.118038 GGTTAACCATATCCACAGAGGCA 60.118 47.826 20.12 0.00 34.69 4.75
2198 2284 2.717639 AACCATATCCACAGAGGCAC 57.282 50.000 0.00 0.00 37.29 5.01
2199 2285 1.583556 ACCATATCCACAGAGGCACA 58.416 50.000 0.00 0.00 37.29 4.57
2203 2289 0.246360 TATCCACAGAGGCACACACG 59.754 55.000 0.00 0.00 37.29 4.49
2204 2290 1.758440 ATCCACAGAGGCACACACGT 61.758 55.000 0.00 0.00 37.29 4.49
2215 2301 0.309922 CACACACGTACGGTCAGAGT 59.690 55.000 21.06 8.19 0.00 3.24
2224 2310 3.306703 CGTACGGTCAGAGTAGAGTTCTC 59.693 52.174 7.57 0.00 0.00 2.87
2226 2312 4.023726 ACGGTCAGAGTAGAGTTCTCTT 57.976 45.455 7.66 0.00 39.84 2.85
2227 2313 4.004982 ACGGTCAGAGTAGAGTTCTCTTC 58.995 47.826 7.66 3.23 39.84 2.87
2228 2314 4.004314 CGGTCAGAGTAGAGTTCTCTTCA 58.996 47.826 7.66 0.00 39.84 3.02
2230 2316 5.220777 CGGTCAGAGTAGAGTTCTCTTCATC 60.221 48.000 7.66 4.58 39.84 2.92
2237 2327 4.888326 AGAGTTCTCTTCATCAGCACTT 57.112 40.909 0.00 0.00 0.00 3.16
2240 2330 2.105006 TCTCTTCATCAGCACTTGGC 57.895 50.000 0.00 0.00 45.30 4.52
2337 2435 3.914860 GGGGGATGGGGAGAGATAA 57.085 57.895 0.00 0.00 0.00 1.75
2375 2477 1.176527 CCAACGCAATGTGATCCCTT 58.823 50.000 0.00 0.00 0.00 3.95
2394 2496 7.947782 TCCCTTCCAAGATATTAAGTGGTAT 57.052 36.000 0.00 0.00 32.68 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 125 6.039605 TGCATGTTTCCTGATAATGTATGTGG 59.960 38.462 0.00 0.00 0.00 4.17
135 136 8.701908 ACAGAAATATATGCATGTTTCCTGAT 57.298 30.769 20.80 5.37 41.00 2.90
219 220 9.182933 GCGTTTAAAAATGTTATGTACAAGGAA 57.817 29.630 0.00 0.00 40.89 3.36
220 221 7.808856 GGCGTTTAAAAATGTTATGTACAAGGA 59.191 33.333 0.00 0.00 40.89 3.36
259 260 5.623174 GAAACATTACCGCGTTTCAAAAA 57.377 34.783 4.92 0.00 46.57 1.94
277 278 2.032377 TGAACGTCGCTTTGATGGAAAC 60.032 45.455 0.00 0.00 37.96 2.78
293 295 3.428870 ACATGCTACTCGAAAACTGAACG 59.571 43.478 0.00 0.00 0.00 3.95
294 296 4.992381 ACATGCTACTCGAAAACTGAAC 57.008 40.909 0.00 0.00 0.00 3.18
377 380 7.211966 TCCGGTTTTCCAAAAATTTATACGA 57.788 32.000 0.00 0.00 40.70 3.43
431 435 9.906660 CAGCTTTACAAAATGTGGATAACTTTA 57.093 29.630 0.00 0.00 0.00 1.85
441 445 5.976534 TGTTAGCACAGCTTTACAAAATGTG 59.023 36.000 12.20 12.20 43.18 3.21
447 451 6.202516 AGTTTTGTTAGCACAGCTTTACAA 57.797 33.333 12.36 12.36 40.44 2.41
449 453 7.520119 AAAAGTTTTGTTAGCACAGCTTTAC 57.480 32.000 7.72 0.00 40.44 2.01
572 584 0.549469 TCATGCTGGCATCATCTGGT 59.451 50.000 4.98 0.00 33.90 4.00
573 585 1.202770 TCTCATGCTGGCATCATCTGG 60.203 52.381 4.98 0.00 33.90 3.86
637 651 4.208686 GGGTCCTACTGCGAGGCG 62.209 72.222 0.00 0.00 36.45 5.52
638 652 3.851128 GGGGTCCTACTGCGAGGC 61.851 72.222 0.00 0.00 36.45 4.70
640 654 1.218316 GTTGGGGTCCTACTGCGAG 59.782 63.158 0.00 0.00 0.00 5.03
641 655 2.642254 CGTTGGGGTCCTACTGCGA 61.642 63.158 0.00 0.00 0.00 5.10
642 656 2.125673 CGTTGGGGTCCTACTGCG 60.126 66.667 0.00 0.00 0.00 5.18
643 657 2.267961 CCGTTGGGGTCCTACTGC 59.732 66.667 0.00 0.00 0.00 4.40
645 659 3.387947 CGCCGTTGGGGTCCTACT 61.388 66.667 0.00 0.00 38.44 2.57
646 660 4.462280 CCGCCGTTGGGGTCCTAC 62.462 72.222 0.00 0.00 39.68 3.18
654 668 3.708734 GACGTTCACCGCCGTTGG 61.709 66.667 0.00 0.00 41.42 3.77
655 669 4.054455 CGACGTTCACCGCCGTTG 62.054 66.667 0.00 0.00 37.67 4.10
668 682 1.200474 AATATGCTCGTGACGCGACG 61.200 55.000 15.93 14.47 45.68 5.12
910 962 1.071385 AGCTCTCCTGTTGTTGGTCTG 59.929 52.381 0.00 0.00 0.00 3.51
912 964 1.070758 TGAGCTCTCCTGTTGTTGGTC 59.929 52.381 16.19 0.00 0.00 4.02
914 967 1.805869 CTGAGCTCTCCTGTTGTTGG 58.194 55.000 16.19 0.00 0.00 3.77
929 982 1.363145 GCTGCTTGAGCTGAGCTGAG 61.363 60.000 13.71 10.98 45.21 3.35
930 983 1.375652 GCTGCTTGAGCTGAGCTGA 60.376 57.895 13.71 0.00 45.21 4.26
931 984 3.179481 GCTGCTTGAGCTGAGCTG 58.821 61.111 13.71 16.77 45.21 4.24
957 1010 3.234630 TTCCTTGCTGGTCGGTCGG 62.235 63.158 0.00 0.00 37.07 4.79
958 1011 1.738099 CTTCCTTGCTGGTCGGTCG 60.738 63.158 0.00 0.00 37.07 4.79
959 1012 1.376037 CCTTCCTTGCTGGTCGGTC 60.376 63.158 0.00 0.00 37.07 4.79
960 1013 2.750350 CCTTCCTTGCTGGTCGGT 59.250 61.111 0.00 0.00 37.07 4.69
961 1014 2.747855 GCCTTCCTTGCTGGTCGG 60.748 66.667 0.00 0.00 37.07 4.79
962 1015 2.747855 GGCCTTCCTTGCTGGTCG 60.748 66.667 0.00 0.00 37.07 4.79
963 1016 1.973812 GTGGCCTTCCTTGCTGGTC 60.974 63.158 3.32 0.00 37.07 4.02
964 1017 2.116125 GTGGCCTTCCTTGCTGGT 59.884 61.111 3.32 0.00 37.07 4.00
965 1018 1.530013 CTTGTGGCCTTCCTTGCTGG 61.530 60.000 3.32 0.00 37.10 4.85
966 1019 0.538057 TCTTGTGGCCTTCCTTGCTG 60.538 55.000 3.32 0.00 0.00 4.41
967 1020 0.185901 TTCTTGTGGCCTTCCTTGCT 59.814 50.000 3.32 0.00 0.00 3.91
968 1021 0.600057 CTTCTTGTGGCCTTCCTTGC 59.400 55.000 3.32 0.00 0.00 4.01
969 1022 2.276732 TCTTCTTGTGGCCTTCCTTG 57.723 50.000 3.32 0.00 0.00 3.61
970 1023 2.443255 TCTTCTTCTTGTGGCCTTCCTT 59.557 45.455 3.32 0.00 0.00 3.36
971 1024 2.057922 TCTTCTTCTTGTGGCCTTCCT 58.942 47.619 3.32 0.00 0.00 3.36
972 1025 2.568623 TCTTCTTCTTGTGGCCTTCC 57.431 50.000 3.32 0.00 0.00 3.46
973 1026 2.751806 CCATCTTCTTCTTGTGGCCTTC 59.248 50.000 3.32 0.00 0.00 3.46
974 1027 2.800250 CCATCTTCTTCTTGTGGCCTT 58.200 47.619 3.32 0.00 0.00 4.35
975 1028 2.503895 CCATCTTCTTCTTGTGGCCT 57.496 50.000 3.32 0.00 0.00 5.19
978 1031 0.449388 GCGCCATCTTCTTCTTGTGG 59.551 55.000 0.00 0.00 0.00 4.17
979 1032 1.135859 GTGCGCCATCTTCTTCTTGTG 60.136 52.381 4.18 0.00 0.00 3.33
980 1033 1.160137 GTGCGCCATCTTCTTCTTGT 58.840 50.000 4.18 0.00 0.00 3.16
981 1034 1.159285 TGTGCGCCATCTTCTTCTTG 58.841 50.000 4.18 0.00 0.00 3.02
982 1035 1.741706 CATGTGCGCCATCTTCTTCTT 59.258 47.619 4.18 0.00 0.00 2.52
983 1036 1.376543 CATGTGCGCCATCTTCTTCT 58.623 50.000 4.18 0.00 0.00 2.85
984 1037 0.248377 GCATGTGCGCCATCTTCTTC 60.248 55.000 4.18 0.00 0.00 2.87
985 1038 1.805254 GCATGTGCGCCATCTTCTT 59.195 52.632 4.18 0.00 0.00 2.52
986 1039 3.506108 GCATGTGCGCCATCTTCT 58.494 55.556 4.18 0.00 0.00 2.85
1318 1380 3.450115 CCCGACGACCACCTCCTC 61.450 72.222 0.00 0.00 0.00 3.71
1410 1472 1.544825 GCTCCTACTGCTGGTGGTCA 61.545 60.000 0.00 0.00 0.00 4.02
1446 1518 2.160013 GGAAACGAAGATCAACACGACG 60.160 50.000 0.00 0.00 0.00 5.12
1504 1586 8.689972 ACTTCCAGGCTTGATTATTATCTTTTG 58.310 33.333 0.00 0.00 0.00 2.44
1506 1588 7.286316 CCACTTCCAGGCTTGATTATTATCTTT 59.714 37.037 0.00 0.00 0.00 2.52
1523 1605 4.223923 AGAGGTTAACTGATCCACTTCCAG 59.776 45.833 5.42 0.00 0.00 3.86
1590 1676 3.684788 GCTGACACATAAGGTAACACCAG 59.315 47.826 0.00 0.00 41.95 4.00
1593 1679 3.125316 GCTGCTGACACATAAGGTAACAC 59.875 47.826 0.00 0.00 41.41 3.32
1599 1685 2.421424 GGAAAGCTGCTGACACATAAGG 59.579 50.000 1.35 0.00 0.00 2.69
1612 1698 7.984050 TGTATAGAAGAAATCAGAGGAAAGCTG 59.016 37.037 0.00 0.00 34.71 4.24
1628 1714 7.498900 CCTGTTGCAATTACCATGTATAGAAGA 59.501 37.037 0.59 0.00 0.00 2.87
1630 1716 6.039270 GCCTGTTGCAATTACCATGTATAGAA 59.961 38.462 0.59 0.00 40.77 2.10
1635 1721 2.757868 GGCCTGTTGCAATTACCATGTA 59.242 45.455 0.59 0.00 43.89 2.29
1636 1722 1.550072 GGCCTGTTGCAATTACCATGT 59.450 47.619 0.59 0.00 43.89 3.21
1637 1723 1.549620 TGGCCTGTTGCAATTACCATG 59.450 47.619 0.59 0.00 43.89 3.66
1638 1724 1.935799 TGGCCTGTTGCAATTACCAT 58.064 45.000 0.59 0.00 43.89 3.55
1639 1725 1.709578 TTGGCCTGTTGCAATTACCA 58.290 45.000 0.59 5.87 43.89 3.25
1640 1726 2.829741 TTTGGCCTGTTGCAATTACC 57.170 45.000 0.59 3.01 43.89 2.85
1641 1727 6.983474 ATTTATTTGGCCTGTTGCAATTAC 57.017 33.333 0.59 0.00 43.89 1.89
1642 1728 9.678260 ATTTATTTATTTGGCCTGTTGCAATTA 57.322 25.926 0.59 0.00 43.89 1.40
1643 1729 7.992754 TTTATTTATTTGGCCTGTTGCAATT 57.007 28.000 0.59 0.00 43.89 2.32
1644 1730 8.460428 CAATTTATTTATTTGGCCTGTTGCAAT 58.540 29.630 0.59 0.00 43.89 3.56
1645 1731 7.574592 GCAATTTATTTATTTGGCCTGTTGCAA 60.575 33.333 3.32 0.00 43.89 4.08
1646 1732 6.128063 GCAATTTATTTATTTGGCCTGTTGCA 60.128 34.615 3.32 0.00 43.89 4.08
1647 1733 6.128063 TGCAATTTATTTATTTGGCCTGTTGC 60.128 34.615 3.32 0.00 37.97 4.17
1648 1734 7.375106 TGCAATTTATTTATTTGGCCTGTTG 57.625 32.000 3.32 0.00 0.00 3.33
1649 1735 7.992754 TTGCAATTTATTTATTTGGCCTGTT 57.007 28.000 3.32 0.00 0.00 3.16
1650 1736 7.665145 ACTTTGCAATTTATTTATTTGGCCTGT 59.335 29.630 3.32 0.00 0.00 4.00
1651 1737 8.042944 ACTTTGCAATTTATTTATTTGGCCTG 57.957 30.769 3.32 0.00 0.00 4.85
1652 1738 9.732130 TTACTTTGCAATTTATTTATTTGGCCT 57.268 25.926 3.32 0.00 0.00 5.19
1669 1755 9.462174 CAATTTTCTCACTGTTATTACTTTGCA 57.538 29.630 0.00 0.00 0.00 4.08
1670 1756 8.915654 CCAATTTTCTCACTGTTATTACTTTGC 58.084 33.333 0.00 0.00 0.00 3.68
1671 1757 9.410556 CCCAATTTTCTCACTGTTATTACTTTG 57.589 33.333 0.00 0.00 0.00 2.77
1672 1758 9.143155 ACCCAATTTTCTCACTGTTATTACTTT 57.857 29.630 0.00 0.00 0.00 2.66
1673 1759 8.576442 CACCCAATTTTCTCACTGTTATTACTT 58.424 33.333 0.00 0.00 0.00 2.24
1674 1760 7.724061 ACACCCAATTTTCTCACTGTTATTACT 59.276 33.333 0.00 0.00 0.00 2.24
1675 1761 7.807907 CACACCCAATTTTCTCACTGTTATTAC 59.192 37.037 0.00 0.00 0.00 1.89
1676 1762 7.523052 GCACACCCAATTTTCTCACTGTTATTA 60.523 37.037 0.00 0.00 0.00 0.98
1677 1763 6.738453 GCACACCCAATTTTCTCACTGTTATT 60.738 38.462 0.00 0.00 0.00 1.40
1678 1764 5.278957 GCACACCCAATTTTCTCACTGTTAT 60.279 40.000 0.00 0.00 0.00 1.89
1679 1765 4.037446 GCACACCCAATTTTCTCACTGTTA 59.963 41.667 0.00 0.00 0.00 2.41
1680 1766 3.181476 GCACACCCAATTTTCTCACTGTT 60.181 43.478 0.00 0.00 0.00 3.16
1681 1767 2.362077 GCACACCCAATTTTCTCACTGT 59.638 45.455 0.00 0.00 0.00 3.55
1682 1768 2.361757 TGCACACCCAATTTTCTCACTG 59.638 45.455 0.00 0.00 0.00 3.66
1683 1769 2.665165 TGCACACCCAATTTTCTCACT 58.335 42.857 0.00 0.00 0.00 3.41
1684 1770 3.068024 TCTTGCACACCCAATTTTCTCAC 59.932 43.478 0.00 0.00 0.00 3.51
1685 1771 3.068024 GTCTTGCACACCCAATTTTCTCA 59.932 43.478 0.00 0.00 0.00 3.27
1686 1772 3.068024 TGTCTTGCACACCCAATTTTCTC 59.932 43.478 0.00 0.00 0.00 2.87
1687 1773 3.030291 TGTCTTGCACACCCAATTTTCT 58.970 40.909 0.00 0.00 0.00 2.52
1688 1774 3.451141 TGTCTTGCACACCCAATTTTC 57.549 42.857 0.00 0.00 0.00 2.29
1689 1775 4.420522 AATGTCTTGCACACCCAATTTT 57.579 36.364 0.00 0.00 38.04 1.82
1690 1776 4.420522 AAATGTCTTGCACACCCAATTT 57.579 36.364 0.00 0.00 38.04 1.82
1691 1777 4.379652 GAAAATGTCTTGCACACCCAATT 58.620 39.130 0.00 0.00 38.04 2.32
1692 1778 3.552684 CGAAAATGTCTTGCACACCCAAT 60.553 43.478 0.00 0.00 38.04 3.16
1693 1779 2.223688 CGAAAATGTCTTGCACACCCAA 60.224 45.455 0.00 0.00 38.04 4.12
1694 1780 1.336440 CGAAAATGTCTTGCACACCCA 59.664 47.619 0.00 0.00 38.04 4.51
1695 1781 1.606668 TCGAAAATGTCTTGCACACCC 59.393 47.619 0.00 0.00 38.04 4.61
1696 1782 3.058293 TGATCGAAAATGTCTTGCACACC 60.058 43.478 0.00 0.00 38.04 4.16
1697 1783 4.083855 TCTGATCGAAAATGTCTTGCACAC 60.084 41.667 0.00 0.00 38.04 3.82
1698 1784 4.064388 TCTGATCGAAAATGTCTTGCACA 58.936 39.130 0.00 0.00 40.18 4.57
1699 1785 4.668576 TCTGATCGAAAATGTCTTGCAC 57.331 40.909 0.00 0.00 0.00 4.57
1700 1786 4.937015 TGATCTGATCGAAAATGTCTTGCA 59.063 37.500 12.65 0.00 0.00 4.08
1701 1787 5.475273 TGATCTGATCGAAAATGTCTTGC 57.525 39.130 12.65 0.00 0.00 4.01
1702 1788 7.299787 TCTTGATCTGATCGAAAATGTCTTG 57.700 36.000 12.65 0.00 0.00 3.02
1703 1789 7.912056 TTCTTGATCTGATCGAAAATGTCTT 57.088 32.000 12.65 0.00 0.00 3.01
1704 1790 7.912056 TTTCTTGATCTGATCGAAAATGTCT 57.088 32.000 12.65 0.00 0.00 3.41
1706 1792 9.994432 GTATTTTCTTGATCTGATCGAAAATGT 57.006 29.630 30.83 20.89 38.54 2.71
1707 1793 9.151752 CGTATTTTCTTGATCTGATCGAAAATG 57.848 33.333 30.83 21.59 38.54 2.32
1708 1794 8.883731 ACGTATTTTCTTGATCTGATCGAAAAT 58.116 29.630 28.72 28.72 39.89 1.82
1709 1795 8.168626 CACGTATTTTCTTGATCTGATCGAAAA 58.831 33.333 23.40 23.40 35.02 2.29
1710 1796 7.674008 GCACGTATTTTCTTGATCTGATCGAAA 60.674 37.037 12.65 13.05 0.00 3.46
1711 1797 6.237835 GCACGTATTTTCTTGATCTGATCGAA 60.238 38.462 12.65 8.22 0.00 3.71
1712 1798 5.232202 GCACGTATTTTCTTGATCTGATCGA 59.768 40.000 12.65 10.01 0.00 3.59
1713 1799 5.005682 TGCACGTATTTTCTTGATCTGATCG 59.994 40.000 12.65 0.15 0.00 3.69
1714 1800 6.036517 ACTGCACGTATTTTCTTGATCTGATC 59.963 38.462 10.72 10.72 0.00 2.92
1715 1801 5.877012 ACTGCACGTATTTTCTTGATCTGAT 59.123 36.000 0.00 0.00 0.00 2.90
1716 1802 5.120674 CACTGCACGTATTTTCTTGATCTGA 59.879 40.000 0.00 0.00 0.00 3.27
1717 1803 5.319139 CACTGCACGTATTTTCTTGATCTG 58.681 41.667 0.00 0.00 0.00 2.90
1718 1804 4.142816 GCACTGCACGTATTTTCTTGATCT 60.143 41.667 0.00 0.00 0.00 2.75
1719 1805 4.091424 GCACTGCACGTATTTTCTTGATC 58.909 43.478 0.00 0.00 0.00 2.92
1720 1806 3.501828 TGCACTGCACGTATTTTCTTGAT 59.498 39.130 0.00 0.00 31.71 2.57
1721 1807 2.875317 TGCACTGCACGTATTTTCTTGA 59.125 40.909 0.00 0.00 31.71 3.02
1722 1808 3.058983 TCTGCACTGCACGTATTTTCTTG 60.059 43.478 0.00 0.00 33.79 3.02
1723 1809 3.138304 TCTGCACTGCACGTATTTTCTT 58.862 40.909 0.00 0.00 33.79 2.52
1724 1810 2.766313 TCTGCACTGCACGTATTTTCT 58.234 42.857 0.00 0.00 33.79 2.52
1725 1811 3.482786 CTTCTGCACTGCACGTATTTTC 58.517 45.455 0.00 0.00 33.79 2.29
1726 1812 2.350772 GCTTCTGCACTGCACGTATTTT 60.351 45.455 0.00 0.00 39.41 1.82
1727 1813 1.197721 GCTTCTGCACTGCACGTATTT 59.802 47.619 0.00 0.00 39.41 1.40
1728 1814 0.798776 GCTTCTGCACTGCACGTATT 59.201 50.000 0.00 0.00 39.41 1.89
1729 1815 0.320683 TGCTTCTGCACTGCACGTAT 60.321 50.000 0.00 0.00 45.31 3.06
1730 1816 0.945743 CTGCTTCTGCACTGCACGTA 60.946 55.000 0.00 0.00 45.31 3.57
1731 1817 2.203056 TGCTTCTGCACTGCACGT 60.203 55.556 0.00 0.00 45.31 4.49
1732 1818 1.898459 CTCTGCTTCTGCACTGCACG 61.898 60.000 0.00 0.00 45.31 5.34
1733 1819 1.575576 CCTCTGCTTCTGCACTGCAC 61.576 60.000 0.00 0.00 45.31 4.57
1734 1820 1.302271 CCTCTGCTTCTGCACTGCA 60.302 57.895 3.11 3.11 45.31 4.41
1735 1821 0.604780 TTCCTCTGCTTCTGCACTGC 60.605 55.000 0.00 0.00 45.31 4.40
1736 1822 1.155042 GTTCCTCTGCTTCTGCACTG 58.845 55.000 0.00 0.00 45.31 3.66
1737 1823 0.036022 GGTTCCTCTGCTTCTGCACT 59.964 55.000 0.00 0.00 45.31 4.40
1738 1824 0.250467 TGGTTCCTCTGCTTCTGCAC 60.250 55.000 0.00 0.00 45.31 4.57
1740 1826 0.322975 TCTGGTTCCTCTGCTTCTGC 59.677 55.000 0.00 0.00 40.20 4.26
1741 1827 3.008330 CAATCTGGTTCCTCTGCTTCTG 58.992 50.000 0.00 0.00 0.00 3.02
1742 1828 2.617532 GCAATCTGGTTCCTCTGCTTCT 60.618 50.000 0.00 0.00 0.00 2.85
1743 1829 1.742268 GCAATCTGGTTCCTCTGCTTC 59.258 52.381 0.00 0.00 0.00 3.86
1744 1830 1.353694 AGCAATCTGGTTCCTCTGCTT 59.646 47.619 0.00 0.00 36.79 3.91
1745 1831 0.990374 AGCAATCTGGTTCCTCTGCT 59.010 50.000 0.00 0.00 35.38 4.24
1746 1832 1.093159 CAGCAATCTGGTTCCTCTGC 58.907 55.000 0.00 0.00 36.68 4.26
1747 1833 2.354259 GTCAGCAATCTGGTTCCTCTG 58.646 52.381 0.00 0.00 40.69 3.35
1748 1834 1.280421 GGTCAGCAATCTGGTTCCTCT 59.720 52.381 0.00 0.00 40.69 3.69
1749 1835 1.280421 AGGTCAGCAATCTGGTTCCTC 59.720 52.381 0.00 0.00 40.69 3.71
1750 1836 1.004044 CAGGTCAGCAATCTGGTTCCT 59.996 52.381 0.00 0.00 40.69 3.36
1751 1837 1.003580 TCAGGTCAGCAATCTGGTTCC 59.996 52.381 0.13 0.00 40.69 3.62
1752 1838 2.479566 TCAGGTCAGCAATCTGGTTC 57.520 50.000 0.13 0.00 40.69 3.62
1753 1839 2.957402 TTCAGGTCAGCAATCTGGTT 57.043 45.000 0.13 0.00 40.69 3.67
1754 1840 4.164796 TCATATTCAGGTCAGCAATCTGGT 59.835 41.667 0.13 0.00 40.69 4.00
1755 1841 4.711399 TCATATTCAGGTCAGCAATCTGG 58.289 43.478 0.13 0.00 40.69 3.86
1756 1842 7.822822 TCATATCATATTCAGGTCAGCAATCTG 59.177 37.037 0.00 0.00 41.67 2.90
1757 1843 7.914859 TCATATCATATTCAGGTCAGCAATCT 58.085 34.615 0.00 0.00 0.00 2.40
1758 1844 8.557592 TTCATATCATATTCAGGTCAGCAATC 57.442 34.615 0.00 0.00 0.00 2.67
1760 1846 9.662947 CTATTCATATCATATTCAGGTCAGCAA 57.337 33.333 0.00 0.00 0.00 3.91
1761 1847 8.262933 CCTATTCATATCATATTCAGGTCAGCA 58.737 37.037 0.00 0.00 0.00 4.41
1762 1848 8.481314 TCCTATTCATATCATATTCAGGTCAGC 58.519 37.037 0.00 0.00 0.00 4.26
1764 1850 8.985922 CCTCCTATTCATATCATATTCAGGTCA 58.014 37.037 0.00 0.00 0.00 4.02
1765 1851 9.206690 TCCTCCTATTCATATCATATTCAGGTC 57.793 37.037 0.00 0.00 0.00 3.85
1766 1852 9.741198 ATCCTCCTATTCATATCATATTCAGGT 57.259 33.333 0.00 0.00 0.00 4.00
1767 1853 9.999660 CATCCTCCTATTCATATCATATTCAGG 57.000 37.037 0.00 0.00 0.00 3.86
1774 1860 9.281680 AGTGAATCATCCTCCTATTCATATCAT 57.718 33.333 0.00 0.00 40.61 2.45
1775 1861 8.676397 AGTGAATCATCCTCCTATTCATATCA 57.324 34.615 0.00 0.00 40.61 2.15
1776 1862 9.381033 CAAGTGAATCATCCTCCTATTCATATC 57.619 37.037 0.00 0.00 40.61 1.63
1777 1863 8.888419 ACAAGTGAATCATCCTCCTATTCATAT 58.112 33.333 0.00 0.00 40.61 1.78
1778 1864 8.267620 ACAAGTGAATCATCCTCCTATTCATA 57.732 34.615 0.00 0.00 40.61 2.15
1779 1865 7.146715 ACAAGTGAATCATCCTCCTATTCAT 57.853 36.000 0.00 0.00 40.61 2.57
1780 1866 6.566079 ACAAGTGAATCATCCTCCTATTCA 57.434 37.500 0.00 0.00 37.30 2.57
1781 1867 7.169982 CGTTACAAGTGAATCATCCTCCTATTC 59.830 40.741 0.00 0.00 0.00 1.75
1782 1868 6.986817 CGTTACAAGTGAATCATCCTCCTATT 59.013 38.462 0.00 0.00 0.00 1.73
1783 1869 6.098409 ACGTTACAAGTGAATCATCCTCCTAT 59.902 38.462 0.00 0.00 0.00 2.57
1784 1870 5.421056 ACGTTACAAGTGAATCATCCTCCTA 59.579 40.000 0.00 0.00 0.00 2.94
1785 1871 4.223032 ACGTTACAAGTGAATCATCCTCCT 59.777 41.667 0.00 0.00 0.00 3.69
1786 1872 4.504858 ACGTTACAAGTGAATCATCCTCC 58.495 43.478 0.00 0.00 0.00 4.30
1787 1873 8.867112 TTATACGTTACAAGTGAATCATCCTC 57.133 34.615 0.00 0.00 0.00 3.71
1788 1874 8.692710 TCTTATACGTTACAAGTGAATCATCCT 58.307 33.333 0.00 0.00 0.00 3.24
1789 1875 8.867112 TCTTATACGTTACAAGTGAATCATCC 57.133 34.615 0.00 0.00 0.00 3.51
1792 1878 8.600625 GCAATCTTATACGTTACAAGTGAATCA 58.399 33.333 0.00 0.00 0.00 2.57
1793 1879 8.818057 AGCAATCTTATACGTTACAAGTGAATC 58.182 33.333 0.00 0.00 0.00 2.52
1794 1880 8.604035 CAGCAATCTTATACGTTACAAGTGAAT 58.396 33.333 0.00 0.00 0.00 2.57
1795 1881 7.815549 TCAGCAATCTTATACGTTACAAGTGAA 59.184 33.333 0.00 0.00 0.00 3.18
1796 1882 7.274904 GTCAGCAATCTTATACGTTACAAGTGA 59.725 37.037 0.00 0.00 0.00 3.41
1797 1883 7.391786 GTCAGCAATCTTATACGTTACAAGTG 58.608 38.462 0.00 0.00 0.00 3.16
1798 1884 6.534079 GGTCAGCAATCTTATACGTTACAAGT 59.466 38.462 0.00 0.00 0.00 3.16
1799 1885 6.757010 AGGTCAGCAATCTTATACGTTACAAG 59.243 38.462 0.00 0.00 0.00 3.16
1800 1886 6.533723 CAGGTCAGCAATCTTATACGTTACAA 59.466 38.462 0.00 0.00 0.00 2.41
1801 1887 6.040247 CAGGTCAGCAATCTTATACGTTACA 58.960 40.000 0.00 0.00 0.00 2.41
1802 1888 6.270815 TCAGGTCAGCAATCTTATACGTTAC 58.729 40.000 0.00 0.00 0.00 2.50
1803 1889 6.459670 TCAGGTCAGCAATCTTATACGTTA 57.540 37.500 0.00 0.00 0.00 3.18
1804 1890 5.339008 TCAGGTCAGCAATCTTATACGTT 57.661 39.130 0.00 0.00 0.00 3.99
1805 1891 5.339008 TTCAGGTCAGCAATCTTATACGT 57.661 39.130 0.00 0.00 0.00 3.57
1806 1892 7.814587 TCATATTCAGGTCAGCAATCTTATACG 59.185 37.037 0.00 0.00 0.00 3.06
1807 1893 9.494271 TTCATATTCAGGTCAGCAATCTTATAC 57.506 33.333 0.00 0.00 0.00 1.47
1810 1896 9.716531 CTATTCATATTCAGGTCAGCAATCTTA 57.283 33.333 0.00 0.00 0.00 2.10
1811 1897 7.664731 CCTATTCATATTCAGGTCAGCAATCTT 59.335 37.037 0.00 0.00 0.00 2.40
1812 1898 7.016957 TCCTATTCATATTCAGGTCAGCAATCT 59.983 37.037 0.00 0.00 0.00 2.40
1813 1899 7.164122 TCCTATTCATATTCAGGTCAGCAATC 58.836 38.462 0.00 0.00 0.00 2.67
1814 1900 7.083062 TCCTATTCATATTCAGGTCAGCAAT 57.917 36.000 0.00 0.00 0.00 3.56
1815 1901 6.464892 CCTCCTATTCATATTCAGGTCAGCAA 60.465 42.308 0.00 0.00 0.00 3.91
1816 1902 5.012458 CCTCCTATTCATATTCAGGTCAGCA 59.988 44.000 0.00 0.00 0.00 4.41
1817 1903 5.247110 TCCTCCTATTCATATTCAGGTCAGC 59.753 44.000 0.00 0.00 0.00 4.26
1818 1904 6.496565 AGTCCTCCTATTCATATTCAGGTCAG 59.503 42.308 0.00 0.00 0.00 3.51
1819 1905 6.385443 AGTCCTCCTATTCATATTCAGGTCA 58.615 40.000 0.00 0.00 0.00 4.02
1820 1906 6.926630 AGTCCTCCTATTCATATTCAGGTC 57.073 41.667 0.00 0.00 0.00 3.85
1821 1907 6.617371 ACAAGTCCTCCTATTCATATTCAGGT 59.383 38.462 0.00 0.00 0.00 4.00
1822 1908 7.072263 ACAAGTCCTCCTATTCATATTCAGG 57.928 40.000 0.00 0.00 0.00 3.86
1823 1909 9.482627 GTTACAAGTCCTCCTATTCATATTCAG 57.517 37.037 0.00 0.00 0.00 3.02
1824 1910 8.141909 CGTTACAAGTCCTCCTATTCATATTCA 58.858 37.037 0.00 0.00 0.00 2.57
1825 1911 8.142551 ACGTTACAAGTCCTCCTATTCATATTC 58.857 37.037 0.00 0.00 0.00 1.75
1826 1912 8.019656 ACGTTACAAGTCCTCCTATTCATATT 57.980 34.615 0.00 0.00 0.00 1.28
1827 1913 7.598759 ACGTTACAAGTCCTCCTATTCATAT 57.401 36.000 0.00 0.00 0.00 1.78
1828 1914 8.573885 CATACGTTACAAGTCCTCCTATTCATA 58.426 37.037 0.00 0.00 0.00 2.15
1829 1915 5.934402 ACGTTACAAGTCCTCCTATTCAT 57.066 39.130 0.00 0.00 0.00 2.57
1830 1916 6.604396 TCATACGTTACAAGTCCTCCTATTCA 59.396 38.462 0.00 0.00 0.00 2.57
1831 1917 6.916932 GTCATACGTTACAAGTCCTCCTATTC 59.083 42.308 0.00 0.00 0.00 1.75
1832 1918 6.606395 AGTCATACGTTACAAGTCCTCCTATT 59.394 38.462 0.00 0.00 0.00 1.73
1833 1919 6.127793 AGTCATACGTTACAAGTCCTCCTAT 58.872 40.000 0.00 0.00 0.00 2.57
1834 1920 5.503927 AGTCATACGTTACAAGTCCTCCTA 58.496 41.667 0.00 0.00 0.00 2.94
1835 1921 4.342359 AGTCATACGTTACAAGTCCTCCT 58.658 43.478 0.00 0.00 0.00 3.69
1836 1922 4.715527 AGTCATACGTTACAAGTCCTCC 57.284 45.455 0.00 0.00 0.00 4.30
1837 1923 5.345202 CACAAGTCATACGTTACAAGTCCTC 59.655 44.000 0.00 0.00 0.00 3.71
1838 1924 5.221382 ACACAAGTCATACGTTACAAGTCCT 60.221 40.000 0.00 0.00 0.00 3.85
1839 1925 4.986659 ACACAAGTCATACGTTACAAGTCC 59.013 41.667 0.00 0.00 0.00 3.85
1840 1926 6.137227 GACACAAGTCATACGTTACAAGTC 57.863 41.667 0.00 0.00 44.34 3.01
1854 1940 1.869767 CTGTTCCTGCAGACACAAGTC 59.130 52.381 17.39 0.00 45.31 3.01
1855 1941 1.486310 TCTGTTCCTGCAGACACAAGT 59.514 47.619 17.39 0.00 40.23 3.16
1856 1942 2.141517 CTCTGTTCCTGCAGACACAAG 58.858 52.381 17.39 12.46 40.23 3.16
1857 1943 1.486310 ACTCTGTTCCTGCAGACACAA 59.514 47.619 17.39 7.43 40.23 3.33
1858 1944 1.123077 ACTCTGTTCCTGCAGACACA 58.877 50.000 17.39 15.85 40.23 3.72
1859 1945 2.246719 AACTCTGTTCCTGCAGACAC 57.753 50.000 17.39 11.76 40.23 3.67
1860 1946 2.092968 ACAAACTCTGTTCCTGCAGACA 60.093 45.455 17.39 11.83 40.23 3.41
1861 1947 2.565841 ACAAACTCTGTTCCTGCAGAC 58.434 47.619 17.39 6.98 40.23 3.51
1862 1948 3.281727 AACAAACTCTGTTCCTGCAGA 57.718 42.857 17.39 0.00 45.50 4.26
1863 1949 6.656266 TCAGAAACAAACTCTGTTCCTGCAG 61.656 44.000 6.78 6.78 46.90 4.41
1864 1950 4.866439 TCAGAAACAAACTCTGTTCCTGCA 60.866 41.667 0.00 0.00 46.90 4.41
1865 1951 3.627577 TCAGAAACAAACTCTGTTCCTGC 59.372 43.478 0.00 0.00 46.90 4.85
1871 1957 6.360618 AGGAAGAATCAGAAACAAACTCTGT 58.639 36.000 0.16 0.00 41.00 3.41
1872 1958 6.072783 GGAGGAAGAATCAGAAACAAACTCTG 60.073 42.308 0.00 0.00 41.47 3.35
1873 1959 6.000840 GGAGGAAGAATCAGAAACAAACTCT 58.999 40.000 0.00 0.00 0.00 3.24
1874 1960 5.765182 TGGAGGAAGAATCAGAAACAAACTC 59.235 40.000 0.00 0.00 0.00 3.01
1875 1961 5.532779 GTGGAGGAAGAATCAGAAACAAACT 59.467 40.000 0.00 0.00 0.00 2.66
1876 1962 5.532779 AGTGGAGGAAGAATCAGAAACAAAC 59.467 40.000 0.00 0.00 0.00 2.93
1877 1963 5.532406 CAGTGGAGGAAGAATCAGAAACAAA 59.468 40.000 0.00 0.00 0.00 2.83
1878 1964 5.065914 CAGTGGAGGAAGAATCAGAAACAA 58.934 41.667 0.00 0.00 0.00 2.83
1879 1965 4.347876 TCAGTGGAGGAAGAATCAGAAACA 59.652 41.667 0.00 0.00 0.00 2.83
1880 1966 4.899502 TCAGTGGAGGAAGAATCAGAAAC 58.100 43.478 0.00 0.00 0.00 2.78
1881 1967 5.768980 ATCAGTGGAGGAAGAATCAGAAA 57.231 39.130 0.00 0.00 0.00 2.52
1882 1968 5.768980 AATCAGTGGAGGAAGAATCAGAA 57.231 39.130 0.00 0.00 0.00 3.02
1883 1969 5.768980 AAATCAGTGGAGGAAGAATCAGA 57.231 39.130 0.00 0.00 0.00 3.27
1884 1970 5.709164 ACAAAATCAGTGGAGGAAGAATCAG 59.291 40.000 0.00 0.00 0.00 2.90
1885 1971 5.474532 CACAAAATCAGTGGAGGAAGAATCA 59.525 40.000 0.00 0.00 33.43 2.57
1886 1972 5.620879 GCACAAAATCAGTGGAGGAAGAATC 60.621 44.000 0.00 0.00 37.46 2.52
1893 1979 3.318839 TCAAAGCACAAAATCAGTGGAGG 59.681 43.478 0.00 0.00 37.46 4.30
1913 1999 4.561530 GCACACTCACTCCTTAAGACATCA 60.562 45.833 3.36 0.00 0.00 3.07
1928 2014 1.621317 TCGGTTATGGAAGCACACTCA 59.379 47.619 0.00 0.00 32.32 3.41
1933 2019 4.662145 CTTGAAATCGGTTATGGAAGCAC 58.338 43.478 0.00 0.00 32.32 4.40
1960 2046 2.267961 CCTCGTAGTGTTGGGGCC 59.732 66.667 0.00 0.00 0.00 5.80
1962 2048 0.909623 ATTCCCTCGTAGTGTTGGGG 59.090 55.000 0.00 0.00 40.05 4.96
1964 2050 1.406887 CCCATTCCCTCGTAGTGTTGG 60.407 57.143 0.00 0.00 0.00 3.77
1965 2051 1.278127 ACCCATTCCCTCGTAGTGTTG 59.722 52.381 0.00 0.00 0.00 3.33
1966 2052 1.652947 ACCCATTCCCTCGTAGTGTT 58.347 50.000 0.00 0.00 0.00 3.32
1969 2055 3.899980 GGTATTACCCATTCCCTCGTAGT 59.100 47.826 0.98 0.00 30.04 2.73
1970 2056 4.158015 AGGTATTACCCATTCCCTCGTAG 58.842 47.826 9.31 0.00 39.75 3.51
1973 2059 5.556006 TTTAGGTATTACCCATTCCCTCG 57.444 43.478 9.31 0.00 39.75 4.63
1974 2060 6.771267 CACTTTTAGGTATTACCCATTCCCTC 59.229 42.308 9.31 0.00 39.75 4.30
1975 2061 6.218938 ACACTTTTAGGTATTACCCATTCCCT 59.781 38.462 9.31 0.00 39.75 4.20
1979 2065 5.655090 GGCACACTTTTAGGTATTACCCATT 59.345 40.000 9.31 0.00 39.75 3.16
1981 2067 4.043059 TGGCACACTTTTAGGTATTACCCA 59.957 41.667 9.31 0.00 39.75 4.51
1982 2068 4.591929 TGGCACACTTTTAGGTATTACCC 58.408 43.478 9.31 0.00 39.75 3.69
1985 2071 5.182380 GCTGTTGGCACACTTTTAGGTATTA 59.818 40.000 0.00 0.00 39.29 0.98
1986 2072 4.022329 GCTGTTGGCACACTTTTAGGTATT 60.022 41.667 0.00 0.00 39.29 1.89
1987 2073 3.506067 GCTGTTGGCACACTTTTAGGTAT 59.494 43.478 0.00 0.00 39.29 2.73
1988 2074 2.882137 GCTGTTGGCACACTTTTAGGTA 59.118 45.455 0.00 0.00 39.29 3.08
1989 2075 1.681264 GCTGTTGGCACACTTTTAGGT 59.319 47.619 0.00 0.00 39.29 3.08
1990 2076 1.000274 GGCTGTTGGCACACTTTTAGG 60.000 52.381 0.00 0.00 44.01 2.69
1991 2077 1.680735 TGGCTGTTGGCACACTTTTAG 59.319 47.619 0.00 0.00 44.10 1.85
1992 2078 1.680735 CTGGCTGTTGGCACACTTTTA 59.319 47.619 0.00 0.00 44.10 1.52
1993 2079 0.461135 CTGGCTGTTGGCACACTTTT 59.539 50.000 0.00 0.00 44.10 2.27
1994 2080 0.395586 TCTGGCTGTTGGCACACTTT 60.396 50.000 0.00 0.00 44.10 2.66
1995 2081 0.820891 CTCTGGCTGTTGGCACACTT 60.821 55.000 0.00 0.00 44.10 3.16
1996 2082 1.228063 CTCTGGCTGTTGGCACACT 60.228 57.895 0.00 0.00 44.10 3.55
1997 2083 2.912624 GCTCTGGCTGTTGGCACAC 61.913 63.158 0.00 0.00 44.10 3.82
1998 2084 2.595463 GCTCTGGCTGTTGGCACA 60.595 61.111 0.00 0.00 44.10 4.57
2003 2089 1.674441 CCATGTATGCTCTGGCTGTTG 59.326 52.381 0.00 0.00 39.59 3.33
2021 2107 3.007290 CCATCAGACACTCAAGAGTTCCA 59.993 47.826 0.00 0.00 40.20 3.53
2030 2116 2.821378 CAATTTGCCCATCAGACACTCA 59.179 45.455 0.00 0.00 0.00 3.41
2031 2117 2.416431 GCAATTTGCCCATCAGACACTC 60.416 50.000 10.34 0.00 37.42 3.51
2033 2119 2.000429 GCAATTTGCCCATCAGACAC 58.000 50.000 10.34 0.00 37.42 3.67
2091 2177 6.861572 CACATCTAGACTTGTGTTTTCGACTA 59.138 38.462 15.49 0.00 38.69 2.59
2137 2223 3.084039 TCTGCCATGTGGAATTCTGAAC 58.916 45.455 5.23 2.79 37.39 3.18
2141 2227 3.094572 CCTTTCTGCCATGTGGAATTCT 58.905 45.455 5.23 0.00 37.39 2.40
2142 2228 2.827921 ACCTTTCTGCCATGTGGAATTC 59.172 45.455 2.55 0.00 37.39 2.17
2143 2229 2.827921 GACCTTTCTGCCATGTGGAATT 59.172 45.455 2.55 0.00 37.39 2.17
2144 2230 2.042162 AGACCTTTCTGCCATGTGGAAT 59.958 45.455 2.55 0.00 37.39 3.01
2145 2231 1.425066 AGACCTTTCTGCCATGTGGAA 59.575 47.619 2.55 0.00 37.39 3.53
2146 2232 1.003580 GAGACCTTTCTGCCATGTGGA 59.996 52.381 2.55 0.00 31.46 4.02
2147 2233 1.004044 AGAGACCTTTCTGCCATGTGG 59.996 52.381 0.00 0.00 32.57 4.17
2148 2234 2.354259 GAGAGACCTTTCTGCCATGTG 58.646 52.381 0.00 0.00 29.47 3.21
2149 2235 1.280421 GGAGAGACCTTTCTGCCATGT 59.720 52.381 0.00 0.00 35.41 3.21
2150 2236 2.035530 GGAGAGACCTTTCTGCCATG 57.964 55.000 0.00 0.00 35.41 3.66
2176 2262 3.877508 GTGCCTCTGTGGATATGGTTAAC 59.122 47.826 0.00 0.00 38.35 2.01
2196 2282 0.309922 ACTCTGACCGTACGTGTGTG 59.690 55.000 15.21 0.29 0.00 3.82
2197 2283 1.802960 CTACTCTGACCGTACGTGTGT 59.197 52.381 15.21 4.82 0.00 3.72
2198 2284 2.071540 TCTACTCTGACCGTACGTGTG 58.928 52.381 15.21 1.10 0.00 3.82
2199 2285 2.289320 ACTCTACTCTGACCGTACGTGT 60.289 50.000 15.21 11.67 0.00 4.49
2203 2289 4.506758 AGAGAACTCTACTCTGACCGTAC 58.493 47.826 2.24 0.00 42.20 3.67
2204 2290 4.822685 AGAGAACTCTACTCTGACCGTA 57.177 45.455 2.24 0.00 42.20 4.02
2215 2301 5.337089 CCAAGTGCTGATGAAGAGAACTCTA 60.337 44.000 4.72 0.00 39.39 2.43
2224 2310 4.913335 ATTATGCCAAGTGCTGATGAAG 57.087 40.909 0.00 0.00 42.00 3.02
2226 2312 4.271661 TGAATTATGCCAAGTGCTGATGA 58.728 39.130 0.00 0.00 42.00 2.92
2227 2313 4.337274 TCTGAATTATGCCAAGTGCTGATG 59.663 41.667 0.00 0.00 42.00 3.07
2228 2314 4.337555 GTCTGAATTATGCCAAGTGCTGAT 59.662 41.667 0.00 0.00 42.00 2.90
2230 2316 3.693085 AGTCTGAATTATGCCAAGTGCTG 59.307 43.478 0.00 0.00 42.00 4.41
2237 2327 4.769688 CTGTGGTAGTCTGAATTATGCCA 58.230 43.478 0.00 0.00 0.00 4.92
2240 2330 4.742167 CGAGCTGTGGTAGTCTGAATTATG 59.258 45.833 0.00 0.00 0.00 1.90
2324 2422 6.081356 CCTAAAGACTCTTATCTCTCCCCAT 58.919 44.000 0.00 0.00 0.00 4.00
2333 2431 5.849510 GGAGAAGCCCTAAAGACTCTTATC 58.150 45.833 0.00 0.00 0.00 1.75
2360 2462 1.402968 CTTGGAAGGGATCACATTGCG 59.597 52.381 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.