Multiple sequence alignment - TraesCS1D01G422700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G422700 chr1D 100.000 6330 0 0 1 6330 478126572 478120243 0.000000e+00 11690
1 TraesCS1D01G422700 chr1A 92.707 5361 202 76 351 5559 574341446 574336123 0.000000e+00 7559
2 TraesCS1D01G422700 chr1A 82.236 653 75 21 5557 6199 574335908 574335287 5.620000e-145 525
3 TraesCS1D01G422700 chr1B 91.380 5429 240 86 351 5659 665315070 665309750 0.000000e+00 7223
4 TraesCS1D01G422700 chr1B 84.161 423 36 14 5713 6114 665309744 665309332 1.290000e-101 381


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G422700 chr1D 478120243 478126572 6329 True 11690 11690 100.0000 1 6330 1 chr1D.!!$R1 6329
1 TraesCS1D01G422700 chr1A 574335287 574341446 6159 True 4042 7559 87.4715 351 6199 2 chr1A.!!$R1 5848
2 TraesCS1D01G422700 chr1B 665309332 665315070 5738 True 3802 7223 87.7705 351 6114 2 chr1B.!!$R1 5763

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
820 875 1.525077 GGTGGTGTTCGTTGGCTCA 60.525 57.895 0.00 0.00 0.00 4.26 F
1811 1900 0.842030 AGATGGAGGCCAACCAGACA 60.842 55.000 22.57 4.52 40.89 3.41 F
3170 3303 0.318762 GCTATCTGTCATCCCCGTCC 59.681 60.000 0.00 0.00 0.00 4.79 F
3555 3688 0.701147 AAAGGAGAAGAAGGCCCCTG 59.299 55.000 0.00 0.00 0.00 4.45 F
5024 5176 0.250901 AACTGGCATCCGTTCAGCTT 60.251 50.000 0.00 0.00 32.19 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2360 2464 0.803768 CTTGCGGTCCGTCTCATGAG 60.804 60.000 17.07 17.07 0.00 2.90 R
3455 3588 0.179086 CACCACCAAACCTTTGTGCC 60.179 55.000 0.00 0.00 36.45 5.01 R
4868 5017 1.139853 AGGCTGCCAGCATAAGTAGTC 59.860 52.381 22.65 0.00 44.75 2.59 R
5201 5373 0.179108 ATGGCGAACCGTAAGCTCTC 60.179 55.000 0.00 0.00 39.70 3.20 R
5866 6307 0.034896 ACGGCACCTAACTCAACTGG 59.965 55.000 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.698506 AAACAAGCTAACCTTTAAGGGATAC 57.301 36.000 16.10 2.33 40.58 2.24
26 27 6.382919 ACAAGCTAACCTTTAAGGGATACA 57.617 37.500 16.10 0.00 40.58 2.29
27 28 6.970191 ACAAGCTAACCTTTAAGGGATACAT 58.030 36.000 16.10 0.00 40.58 2.29
28 29 7.410991 ACAAGCTAACCTTTAAGGGATACATT 58.589 34.615 16.10 1.91 46.24 2.71
29 30 7.893833 ACAAGCTAACCTTTAAGGGATACATTT 59.106 33.333 16.10 1.20 37.19 2.32
30 31 9.403583 CAAGCTAACCTTTAAGGGATACATTTA 57.596 33.333 16.10 2.33 37.19 1.40
32 33 9.574516 AGCTAACCTTTAAGGGATACATTTATG 57.425 33.333 16.10 0.00 37.19 1.90
33 34 9.569122 GCTAACCTTTAAGGGATACATTTATGA 57.431 33.333 16.10 0.00 37.19 2.15
41 42 9.562408 TTAAGGGATACATTTATGAAATACGCA 57.438 29.630 0.00 0.00 37.19 5.24
42 43 8.635765 AAGGGATACATTTATGAAATACGCAT 57.364 30.769 0.00 0.00 37.19 4.73
43 44 8.044060 AGGGATACATTTATGAAATACGCATG 57.956 34.615 0.00 0.00 39.74 4.06
44 45 6.747280 GGGATACATTTATGAAATACGCATGC 59.253 38.462 7.91 7.91 39.74 4.06
45 46 7.304735 GGATACATTTATGAAATACGCATGCA 58.695 34.615 19.57 0.00 0.00 3.96
46 47 7.482743 GGATACATTTATGAAATACGCATGCAG 59.517 37.037 19.57 12.98 0.00 4.41
47 48 6.135290 ACATTTATGAAATACGCATGCAGT 57.865 33.333 19.57 18.05 0.00 4.40
48 49 5.972973 ACATTTATGAAATACGCATGCAGTG 59.027 36.000 19.57 3.77 0.00 3.66
49 50 5.559427 TTTATGAAATACGCATGCAGTGT 57.441 34.783 19.57 11.86 44.62 3.55
50 51 6.670077 TTTATGAAATACGCATGCAGTGTA 57.330 33.333 19.57 12.24 46.38 2.90
51 52 4.536364 ATGAAATACGCATGCAGTGTAC 57.464 40.909 19.57 12.14 45.26 2.90
52 53 3.330267 TGAAATACGCATGCAGTGTACA 58.670 40.909 19.57 14.14 45.26 2.90
53 54 3.748568 TGAAATACGCATGCAGTGTACAA 59.251 39.130 19.57 1.81 45.26 2.41
54 55 4.214332 TGAAATACGCATGCAGTGTACAAA 59.786 37.500 19.57 1.11 45.26 2.83
55 56 4.757799 AATACGCATGCAGTGTACAAAA 57.242 36.364 19.57 0.41 45.26 2.44
56 57 4.757799 ATACGCATGCAGTGTACAAAAA 57.242 36.364 19.57 0.00 45.26 1.94
76 77 6.582437 AAAAATGTCCGTGCAACTTTTAAG 57.418 33.333 0.00 0.00 31.75 1.85
77 78 4.911514 AATGTCCGTGCAACTTTTAAGT 57.088 36.364 0.00 0.00 42.04 2.24
78 79 6.380095 AAATGTCCGTGCAACTTTTAAGTA 57.620 33.333 0.00 0.00 38.57 2.24
79 80 6.380095 AATGTCCGTGCAACTTTTAAGTAA 57.620 33.333 0.00 0.00 38.57 2.24
80 81 6.569179 ATGTCCGTGCAACTTTTAAGTAAT 57.431 33.333 0.00 0.00 38.57 1.89
81 82 5.753744 TGTCCGTGCAACTTTTAAGTAATG 58.246 37.500 0.00 0.00 38.57 1.90
82 83 5.297278 TGTCCGTGCAACTTTTAAGTAATGT 59.703 36.000 0.00 0.00 38.57 2.71
83 84 6.183360 TGTCCGTGCAACTTTTAAGTAATGTT 60.183 34.615 0.00 0.00 38.57 2.71
84 85 7.012138 TGTCCGTGCAACTTTTAAGTAATGTTA 59.988 33.333 0.00 0.00 38.57 2.41
85 86 7.856894 GTCCGTGCAACTTTTAAGTAATGTTAA 59.143 33.333 0.00 0.00 38.57 2.01
86 87 8.569641 TCCGTGCAACTTTTAAGTAATGTTAAT 58.430 29.630 0.00 0.00 38.57 1.40
87 88 9.828852 CCGTGCAACTTTTAAGTAATGTTAATA 57.171 29.630 0.00 0.00 38.57 0.98
138 139 7.895582 AAAAATGTTCGCATGTTCAAAAATG 57.104 28.000 0.00 0.00 34.10 2.32
139 140 6.601741 AAATGTTCGCATGTTCAAAAATGT 57.398 29.167 0.00 0.00 37.97 2.71
140 141 5.579384 ATGTTCGCATGTTCAAAAATGTG 57.421 34.783 0.00 0.83 36.29 3.21
141 142 3.244814 TGTTCGCATGTTCAAAAATGTGC 59.755 39.130 2.22 0.00 34.90 4.57
142 143 3.089573 TCGCATGTTCAAAAATGTGCA 57.910 38.095 2.22 0.00 34.90 4.57
143 144 3.651206 TCGCATGTTCAAAAATGTGCAT 58.349 36.364 0.00 0.00 34.90 3.96
144 145 3.429207 TCGCATGTTCAAAAATGTGCATG 59.571 39.130 0.00 0.00 37.39 4.06
145 146 3.184783 CGCATGTTCAAAAATGTGCATGT 59.815 39.130 0.00 0.00 36.88 3.21
146 147 4.318903 CGCATGTTCAAAAATGTGCATGTT 60.319 37.500 0.00 0.00 36.88 2.71
147 148 5.107568 CGCATGTTCAAAAATGTGCATGTTA 60.108 36.000 0.00 0.00 36.88 2.41
148 149 6.072733 GCATGTTCAAAAATGTGCATGTTAC 58.927 36.000 0.00 0.00 36.88 2.50
149 150 6.292757 GCATGTTCAAAAATGTGCATGTTACA 60.293 34.615 7.27 7.27 36.88 2.41
150 151 7.571613 GCATGTTCAAAAATGTGCATGTTACAT 60.572 33.333 10.67 10.67 40.30 2.29
151 152 7.175073 TGTTCAAAAATGTGCATGTTACATG 57.825 32.000 19.89 19.89 38.67 3.21
152 153 6.760298 TGTTCAAAAATGTGCATGTTACATGT 59.240 30.769 23.88 2.69 38.67 3.21
153 154 7.922811 TGTTCAAAAATGTGCATGTTACATGTA 59.077 29.630 23.88 18.32 38.67 2.29
154 155 8.759641 GTTCAAAAATGTGCATGTTACATGTAA 58.240 29.630 23.88 14.35 38.67 2.41
155 156 8.877808 TCAAAAATGTGCATGTTACATGTAAA 57.122 26.923 23.88 16.73 38.67 2.01
156 157 9.317936 TCAAAAATGTGCATGTTACATGTAAAA 57.682 25.926 23.88 15.29 38.67 1.52
157 158 9.926751 CAAAAATGTGCATGTTACATGTAAAAA 57.073 25.926 23.88 11.65 38.67 1.94
187 188 9.748708 TTCACTTGTTTGAAAAATATCTTCAGG 57.251 29.630 1.70 0.00 34.41 3.86
188 189 7.867403 TCACTTGTTTGAAAAATATCTTCAGGC 59.133 33.333 1.70 0.00 34.41 4.85
189 190 7.116805 CACTTGTTTGAAAAATATCTTCAGGCC 59.883 37.037 0.00 0.00 34.41 5.19
190 191 6.662865 TGTTTGAAAAATATCTTCAGGCCA 57.337 33.333 5.01 0.00 34.41 5.36
191 192 7.243604 TGTTTGAAAAATATCTTCAGGCCAT 57.756 32.000 5.01 0.00 34.41 4.40
192 193 7.678837 TGTTTGAAAAATATCTTCAGGCCATT 58.321 30.769 5.01 0.00 34.41 3.16
193 194 8.156165 TGTTTGAAAAATATCTTCAGGCCATTT 58.844 29.630 5.01 0.00 34.41 2.32
194 195 9.002600 GTTTGAAAAATATCTTCAGGCCATTTT 57.997 29.630 5.01 3.52 34.41 1.82
195 196 9.571816 TTTGAAAAATATCTTCAGGCCATTTTT 57.428 25.926 16.17 16.17 39.96 1.94
197 198 9.874205 TGAAAAATATCTTCAGGCCATTTTTAG 57.126 29.630 16.19 1.89 38.33 1.85
203 204 6.916360 TCTTCAGGCCATTTTTAGAAATGT 57.084 33.333 15.38 0.00 46.90 2.71
204 205 7.301868 TCTTCAGGCCATTTTTAGAAATGTT 57.698 32.000 15.38 1.39 46.90 2.71
205 206 7.153985 TCTTCAGGCCATTTTTAGAAATGTTG 58.846 34.615 15.38 11.24 46.90 3.33
206 207 6.662865 TCAGGCCATTTTTAGAAATGTTGA 57.337 33.333 15.38 12.84 46.90 3.18
207 208 7.243604 TCAGGCCATTTTTAGAAATGTTGAT 57.756 32.000 15.38 0.00 46.90 2.57
208 209 8.359875 TCAGGCCATTTTTAGAAATGTTGATA 57.640 30.769 15.38 0.00 46.90 2.15
209 210 8.980596 TCAGGCCATTTTTAGAAATGTTGATAT 58.019 29.630 15.38 0.00 46.90 1.63
399 400 9.503427 GTATTGCTTCATATACAAAAACCACTC 57.497 33.333 0.00 0.00 0.00 3.51
400 401 6.509418 TGCTTCATATACAAAAACCACTCC 57.491 37.500 0.00 0.00 0.00 3.85
522 552 2.352805 GCTTCACCCTCACCCAGG 59.647 66.667 0.00 0.00 43.01 4.45
561 591 3.523606 TTTCTGTGCACAGCAAACAAT 57.476 38.095 36.76 0.00 41.47 2.71
812 867 1.666872 GTTCCTCCGGTGGTGTTCG 60.667 63.158 21.58 0.00 0.00 3.95
815 870 1.959226 CCTCCGGTGGTGTTCGTTG 60.959 63.158 14.67 0.00 0.00 4.10
818 873 2.590575 CGGTGGTGTTCGTTGGCT 60.591 61.111 0.00 0.00 0.00 4.75
820 875 1.525077 GGTGGTGTTCGTTGGCTCA 60.525 57.895 0.00 0.00 0.00 4.26
837 903 5.918608 TGGCTCACTAAAGATATGAGGAAC 58.081 41.667 2.90 0.00 40.23 3.62
838 904 5.425217 TGGCTCACTAAAGATATGAGGAACA 59.575 40.000 2.90 0.00 40.23 3.18
848 914 5.312079 AGATATGAGGAACATTTAGCAGCC 58.688 41.667 0.00 0.00 40.07 4.85
856 922 3.721370 ATTTAGCAGCCCCGGCCAG 62.721 63.158 2.24 0.00 43.17 4.85
880 946 2.616330 CGGCCATTCACACGTGCTT 61.616 57.895 17.22 0.00 0.00 3.91
1120 1189 2.076863 CCGTCAATGGTTCCTTCTGTC 58.923 52.381 0.00 0.00 0.00 3.51
1121 1190 2.076863 CGTCAATGGTTCCTTCTGTCC 58.923 52.381 0.00 0.00 0.00 4.02
1132 1201 5.124617 GGTTCCTTCTGTCCATCTGAATTTC 59.875 44.000 0.00 0.00 34.44 2.17
1151 1220 0.935898 CTCGCTCAAGCTTATGCCTG 59.064 55.000 14.60 0.00 40.80 4.85
1244 1322 1.102978 ATCCACTGCCCGCAATTTAC 58.897 50.000 0.00 0.00 0.00 2.01
1273 1351 3.402628 ACTATTGGTTCTGCGTCTTGT 57.597 42.857 0.00 0.00 0.00 3.16
1279 1357 1.126846 GGTTCTGCGTCTTGTTCATCG 59.873 52.381 0.00 0.00 0.00 3.84
1283 1361 3.569957 GCGTCTTGTTCATCGCTTC 57.430 52.632 0.00 0.00 44.28 3.86
1284 1362 1.071605 GCGTCTTGTTCATCGCTTCT 58.928 50.000 0.00 0.00 44.28 2.85
1285 1363 1.201855 GCGTCTTGTTCATCGCTTCTG 60.202 52.381 0.00 0.00 44.28 3.02
1811 1900 0.842030 AGATGGAGGCCAACCAGACA 60.842 55.000 22.57 4.52 40.89 3.41
1898 1987 1.030488 AGAAGGACGCCGAGATCGAA 61.030 55.000 3.31 0.00 43.02 3.71
1985 2074 2.368221 GCTGCTGTATGAGAAGAGGGAT 59.632 50.000 0.00 0.00 25.92 3.85
2199 2298 1.265905 GGTTCTGCTACGTTTGTTGGG 59.734 52.381 0.00 0.00 0.00 4.12
2393 2497 4.524749 GACCGCAAGTTTTGACTTTACTC 58.475 43.478 0.00 0.00 0.00 2.59
2451 2555 3.855689 ATCTGGGCAAGAAATTGAACG 57.144 42.857 0.00 0.00 38.79 3.95
2460 2564 3.643159 AGAAATTGAACGGTTTGCTCC 57.357 42.857 0.00 0.00 0.00 4.70
2528 2632 3.373439 GTCAGCTGAGGTGCTTTTCTATG 59.627 47.826 18.89 0.00 41.98 2.23
2532 2636 3.753272 GCTGAGGTGCTTTTCTATGTTGA 59.247 43.478 0.00 0.00 0.00 3.18
2533 2637 4.142730 GCTGAGGTGCTTTTCTATGTTGAG 60.143 45.833 0.00 0.00 0.00 3.02
2534 2638 5.227569 TGAGGTGCTTTTCTATGTTGAGA 57.772 39.130 0.00 0.00 0.00 3.27
2535 2639 5.240891 TGAGGTGCTTTTCTATGTTGAGAG 58.759 41.667 0.00 0.00 0.00 3.20
2536 2640 5.012046 TGAGGTGCTTTTCTATGTTGAGAGA 59.988 40.000 0.00 0.00 0.00 3.10
2537 2641 5.869579 AGGTGCTTTTCTATGTTGAGAGAA 58.130 37.500 0.00 0.00 0.00 2.87
2538 2642 6.479884 AGGTGCTTTTCTATGTTGAGAGAAT 58.520 36.000 0.00 0.00 29.58 2.40
2539 2643 6.373774 AGGTGCTTTTCTATGTTGAGAGAATG 59.626 38.462 0.00 0.00 29.58 2.67
2573 2677 6.914654 TTTCAGATCCAAATCACAATTCCA 57.085 33.333 0.00 0.00 34.07 3.53
2581 2685 5.243730 TCCAAATCACAATTCCAGAAGTTCC 59.756 40.000 0.00 0.00 0.00 3.62
2587 2691 5.598005 TCACAATTCCAGAAGTTCCACAAAT 59.402 36.000 0.00 0.00 0.00 2.32
2600 2707 6.006449 AGTTCCACAAATGAAGAATGCTACT 58.994 36.000 0.00 0.00 0.00 2.57
2632 2739 9.643693 ATTAATTTTTAGCCAAGTGTCAGATTG 57.356 29.630 0.00 0.00 0.00 2.67
2633 2740 6.655078 ATTTTTAGCCAAGTGTCAGATTGT 57.345 33.333 0.00 0.00 0.00 2.71
2634 2741 7.759489 ATTTTTAGCCAAGTGTCAGATTGTA 57.241 32.000 0.00 0.00 0.00 2.41
2635 2742 7.759489 TTTTTAGCCAAGTGTCAGATTGTAT 57.241 32.000 0.00 0.00 0.00 2.29
2636 2743 7.759489 TTTTAGCCAAGTGTCAGATTGTATT 57.241 32.000 0.00 0.00 0.00 1.89
2637 2744 7.759489 TTTAGCCAAGTGTCAGATTGTATTT 57.241 32.000 0.00 0.00 0.00 1.40
2638 2745 8.856153 TTTAGCCAAGTGTCAGATTGTATTTA 57.144 30.769 0.00 0.00 0.00 1.40
2662 2795 7.961326 AATACTTTTTCATGGCATACTTCCT 57.039 32.000 0.00 0.00 0.00 3.36
2747 2880 4.252073 CAAGAGAGGAGATCAACAACCTG 58.748 47.826 0.00 0.00 32.53 4.00
2753 2886 3.843027 AGGAGATCAACAACCTGAGACAT 59.157 43.478 0.00 0.00 0.00 3.06
2972 3105 0.824109 TGATGCTCGAATTCGGGTCT 59.176 50.000 27.40 15.69 42.89 3.85
3170 3303 0.318762 GCTATCTGTCATCCCCGTCC 59.681 60.000 0.00 0.00 0.00 4.79
3339 3472 5.475719 CAAATGTTGCATCTTCATTCCAGT 58.524 37.500 0.00 0.00 32.39 4.00
3356 3489 3.996363 TCCAGTTGATGTCGAAGAATGTG 59.004 43.478 0.00 0.00 39.69 3.21
3365 3498 2.814336 GTCGAAGAATGTGGAAGGCTTT 59.186 45.455 0.00 0.00 39.69 3.51
3380 3513 4.500499 AGGCTTTGCTGATGAGAAGTAT 57.500 40.909 0.00 0.00 0.00 2.12
3554 3687 2.361085 TAAAGGAGAAGAAGGCCCCT 57.639 50.000 0.00 0.00 0.00 4.79
3555 3688 0.701147 AAAGGAGAAGAAGGCCCCTG 59.299 55.000 0.00 0.00 0.00 4.45
3650 3783 1.478631 CCCAAATTGAGAAGAGGGCC 58.521 55.000 0.00 0.00 0.00 5.80
3939 4072 3.640967 CACCACCTCTTTGGGATCAAAAA 59.359 43.478 0.00 0.00 41.70 1.94
3974 4107 4.720090 CTGACAACAGAAGCAACATGATC 58.280 43.478 0.00 0.00 46.03 2.92
4032 4165 2.918712 AAGTATCTTCAGATGGCCCG 57.081 50.000 0.00 0.00 36.05 6.13
4035 4168 0.764369 TATCTTCAGATGGCCCGCCT 60.764 55.000 7.35 0.00 36.05 5.52
4036 4169 1.639635 ATCTTCAGATGGCCCGCCTT 61.640 55.000 7.35 0.00 36.94 4.35
4062 4195 2.994186 AAATCCTGCCAAATCCATGC 57.006 45.000 0.00 0.00 0.00 4.06
4081 4214 1.473257 GCCGTCCATCATTAGTGCAGA 60.473 52.381 0.00 0.00 0.00 4.26
4091 4224 6.148976 CCATCATTAGTGCAGATCATTGTAGG 59.851 42.308 0.00 0.00 0.00 3.18
4204 4337 4.026356 AGGAGAATTTGTTGAGTCCCTG 57.974 45.455 0.00 0.00 0.00 4.45
4249 4382 4.795795 AGATTCGCGAATATCGATGATGTC 59.204 41.667 32.58 17.07 43.74 3.06
4500 4633 2.108952 AGAGAACAAGGCCACATCCTTT 59.891 45.455 5.01 0.00 43.62 3.11
4679 4814 4.218200 TGCGAATTCCAAGATGTTTGTGAT 59.782 37.500 0.00 0.00 0.00 3.06
4684 4819 8.664798 CGAATTCCAAGATGTTTGTGATAAGTA 58.335 33.333 0.00 0.00 0.00 2.24
4690 4825 8.522830 CCAAGATGTTTGTGATAAGTATTGGTT 58.477 33.333 0.00 0.00 0.00 3.67
4719 4854 9.401058 CCCTAAGAATCATAATTTCAGTGAACT 57.599 33.333 4.68 0.00 0.00 3.01
4739 4874 9.856488 GTGAACTAATTAGTGTCATACTTCTGA 57.144 33.333 18.70 0.00 40.89 3.27
4858 4993 1.756538 CAGGAAAAGTTGGCAAGGTGT 59.243 47.619 0.00 0.00 0.00 4.16
4859 4994 1.756538 AGGAAAAGTTGGCAAGGTGTG 59.243 47.619 0.00 0.00 0.00 3.82
4879 5028 5.918011 GTGTGCATCTCTAGACTACTTATGC 59.082 44.000 0.00 0.00 38.90 3.14
4895 5044 2.044123 ATGCTGGCAGCCTTACTTAC 57.956 50.000 34.58 6.53 41.51 2.34
5024 5176 0.250901 AACTGGCATCCGTTCAGCTT 60.251 50.000 0.00 0.00 32.19 3.74
5149 5301 3.557595 GCTTTCCGAGTTCATCAGGTATG 59.442 47.826 0.00 0.00 36.88 2.39
5152 5304 4.913335 TCCGAGTTCATCAGGTATGTAC 57.087 45.455 0.00 0.00 36.42 2.90
5154 5319 4.954202 TCCGAGTTCATCAGGTATGTACTT 59.046 41.667 0.00 0.00 43.82 2.24
5156 5321 5.067936 CCGAGTTCATCAGGTATGTACTTCT 59.932 44.000 0.00 0.00 43.82 2.85
5158 5323 7.201794 CCGAGTTCATCAGGTATGTACTTCTTA 60.202 40.741 0.00 0.00 43.82 2.10
5165 5330 9.599866 CATCAGGTATGTACTTCTTATCAACAA 57.400 33.333 0.00 0.00 0.00 2.83
5184 5349 8.800370 TCAACAATATGAGTATTTACAGGCAA 57.200 30.769 0.00 0.00 0.00 4.52
5185 5350 9.237187 TCAACAATATGAGTATTTACAGGCAAA 57.763 29.630 0.00 0.00 0.00 3.68
5190 5362 8.995027 ATATGAGTATTTACAGGCAAATGGAA 57.005 30.769 0.00 0.00 30.84 3.53
5201 5373 5.409214 ACAGGCAAATGGAAATTTCAAATCG 59.591 36.000 19.49 6.21 0.00 3.34
5205 5377 6.035327 GGCAAATGGAAATTTCAAATCGAGAG 59.965 38.462 19.49 2.08 0.00 3.20
5211 5383 5.960105 GGAAATTTCAAATCGAGAGCTTACG 59.040 40.000 19.49 7.07 0.00 3.18
5300 5472 1.017701 CAAGATGAGCAGCACGCAGA 61.018 55.000 0.00 0.00 46.13 4.26
5349 5543 2.067013 GTGCGGAGTCTTCAGGTTAAC 58.933 52.381 0.00 0.00 0.00 2.01
5352 5546 2.994578 GCGGAGTCTTCAGGTTAACTTC 59.005 50.000 5.42 0.00 0.00 3.01
5363 5557 1.534163 GGTTAACTTCGAGGGCACAAC 59.466 52.381 5.42 0.00 0.00 3.32
5502 5704 1.587946 CAAGTTTGTTTGTTCGGCTGC 59.412 47.619 0.00 0.00 0.00 5.25
5580 6000 6.819397 ACCTAGTTTTTGCTACTTCCAATC 57.181 37.500 0.00 0.00 0.00 2.67
5619 6039 5.048921 AGTTGAAATGTCTGCATCAGTCTTG 60.049 40.000 0.00 0.00 33.50 3.02
5624 6044 3.160269 TGTCTGCATCAGTCTTGAGAGA 58.840 45.455 0.00 0.00 36.61 3.10
5649 6069 7.681939 AAAACTCGTCAGATTAAAATGCCTA 57.318 32.000 0.00 0.00 0.00 3.93
5664 6084 0.876342 GCCTAGAACTCAATCCGGCG 60.876 60.000 0.00 0.00 30.09 6.46
5672 6092 3.854669 CAATCCGGCGAGCTCCCT 61.855 66.667 9.30 0.00 0.00 4.20
5673 6093 2.123425 AATCCGGCGAGCTCCCTA 60.123 61.111 9.30 2.29 0.00 3.53
5677 6097 3.597728 CGGCGAGCTCCCTAGGAC 61.598 72.222 11.48 0.00 0.00 3.85
5692 6112 2.799452 GGACGGGCGGGTAATGCTA 61.799 63.158 0.00 0.00 0.00 3.49
5694 6114 0.250166 GACGGGCGGGTAATGCTAAT 60.250 55.000 0.00 0.00 0.00 1.73
5695 6115 1.001181 GACGGGCGGGTAATGCTAATA 59.999 52.381 0.00 0.00 0.00 0.98
5696 6116 1.626825 ACGGGCGGGTAATGCTAATAT 59.373 47.619 0.00 0.00 0.00 1.28
5697 6117 2.277084 CGGGCGGGTAATGCTAATATC 58.723 52.381 0.00 0.00 0.00 1.63
5698 6118 2.354303 CGGGCGGGTAATGCTAATATCA 60.354 50.000 0.00 0.00 0.00 2.15
5699 6119 3.681594 CGGGCGGGTAATGCTAATATCAT 60.682 47.826 0.00 0.00 0.00 2.45
5701 6121 4.814771 GGGCGGGTAATGCTAATATCATAC 59.185 45.833 0.00 0.00 0.00 2.39
5702 6122 4.506654 GGCGGGTAATGCTAATATCATACG 59.493 45.833 0.00 0.00 0.00 3.06
5703 6123 4.025979 GCGGGTAATGCTAATATCATACGC 60.026 45.833 0.00 0.00 0.00 4.42
5704 6124 5.106442 CGGGTAATGCTAATATCATACGCA 58.894 41.667 0.00 0.00 34.83 5.24
5706 6126 6.257849 CGGGTAATGCTAATATCATACGCAAT 59.742 38.462 0.00 0.00 33.94 3.56
5707 6127 7.409697 GGGTAATGCTAATATCATACGCAATG 58.590 38.462 0.00 0.00 36.88 2.82
5709 6129 9.093970 GGTAATGCTAATATCATACGCAATGTA 57.906 33.333 0.00 0.00 36.89 2.29
5723 6144 3.848272 CAATGTATGCAAAACCGGAGT 57.152 42.857 9.46 0.00 0.00 3.85
5724 6145 4.955925 CAATGTATGCAAAACCGGAGTA 57.044 40.909 9.46 0.00 0.00 2.59
5739 6160 2.989840 CGGAGTAACTTGTGCTGAAGAG 59.010 50.000 2.72 0.00 0.00 2.85
5744 6165 3.845781 AACTTGTGCTGAAGAGAAGGA 57.154 42.857 2.72 0.00 0.00 3.36
5745 6166 4.363991 AACTTGTGCTGAAGAGAAGGAT 57.636 40.909 2.72 0.00 0.00 3.24
5795 6229 3.409605 AAACCCAACGTGGCGAGGT 62.410 57.895 0.00 0.00 35.79 3.85
5807 6241 2.423898 GCGAGGTACTGCAGGGCTA 61.424 63.158 19.93 0.00 41.55 3.93
5808 6242 1.749334 GCGAGGTACTGCAGGGCTAT 61.749 60.000 19.93 0.00 41.55 2.97
5810 6244 1.123928 GAGGTACTGCAGGGCTATGT 58.876 55.000 19.93 0.00 41.55 2.29
5811 6245 0.833287 AGGTACTGCAGGGCTATGTG 59.167 55.000 19.93 0.00 37.18 3.21
5834 6275 1.959226 GAGCGACCCTGCGAACAAA 60.959 57.895 0.00 0.00 40.67 2.83
5836 6277 1.370051 GCGACCCTGCGAACAAAAC 60.370 57.895 0.00 0.00 0.00 2.43
5838 6279 0.378962 CGACCCTGCGAACAAAACAA 59.621 50.000 0.00 0.00 0.00 2.83
5839 6280 1.835121 GACCCTGCGAACAAAACAAC 58.165 50.000 0.00 0.00 0.00 3.32
5841 6282 1.134175 ACCCTGCGAACAAAACAACAG 59.866 47.619 0.00 0.00 0.00 3.16
5842 6283 1.403679 CCCTGCGAACAAAACAACAGA 59.596 47.619 0.00 0.00 0.00 3.41
5843 6284 2.159310 CCCTGCGAACAAAACAACAGAA 60.159 45.455 0.00 0.00 0.00 3.02
5844 6285 3.108144 CCTGCGAACAAAACAACAGAAG 58.892 45.455 0.00 0.00 0.00 2.85
5846 6287 2.490115 TGCGAACAAAACAACAGAAGGT 59.510 40.909 0.00 0.00 0.00 3.50
5848 6289 3.434637 CGAACAAAACAACAGAAGGTGG 58.565 45.455 0.00 0.00 0.00 4.61
5850 6291 2.456577 ACAAAACAACAGAAGGTGGCT 58.543 42.857 0.00 0.00 0.00 4.75
5852 6293 0.746659 AAACAACAGAAGGTGGCTGC 59.253 50.000 0.00 0.00 36.86 5.25
5854 6295 2.980233 AACAGAAGGTGGCTGCGC 60.980 61.111 0.00 0.00 36.86 6.09
5867 6308 3.277133 TGCGCCAAAGCAGATTCC 58.723 55.556 4.18 0.00 42.92 3.01
5868 6309 1.603171 TGCGCCAAAGCAGATTCCA 60.603 52.632 4.18 0.00 42.92 3.53
5869 6310 1.138247 GCGCCAAAGCAGATTCCAG 59.862 57.895 0.00 0.00 39.83 3.86
5870 6311 1.589716 GCGCCAAAGCAGATTCCAGT 61.590 55.000 0.00 0.00 39.83 4.00
5920 6361 2.683933 GAGCCGGGAGAAGGTGGA 60.684 66.667 2.18 0.00 0.00 4.02
5951 6392 4.148825 CCGTCTGAAGGCCGAGGG 62.149 72.222 0.00 0.00 0.00 4.30
5952 6393 3.068691 CGTCTGAAGGCCGAGGGA 61.069 66.667 0.00 0.00 0.00 4.20
5953 6394 2.896443 GTCTGAAGGCCGAGGGAG 59.104 66.667 0.00 0.00 0.00 4.30
5954 6395 1.682684 GTCTGAAGGCCGAGGGAGA 60.683 63.158 0.00 0.00 0.00 3.71
5955 6396 1.380515 TCTGAAGGCCGAGGGAGAG 60.381 63.158 0.00 0.00 0.00 3.20
5956 6397 1.380515 CTGAAGGCCGAGGGAGAGA 60.381 63.158 0.00 0.00 0.00 3.10
5957 6398 0.972983 CTGAAGGCCGAGGGAGAGAA 60.973 60.000 0.00 0.00 0.00 2.87
5984 6431 2.430382 GAAGAGAACCCACCGCGTGA 62.430 60.000 4.92 0.00 35.23 4.35
6032 6479 3.043713 CTGCTTCGGCTTGCGTCA 61.044 61.111 0.00 0.00 42.37 4.35
6033 6480 2.590291 TGCTTCGGCTTGCGTCAA 60.590 55.556 0.00 0.00 42.37 3.18
6052 6499 0.249155 ACGCTCAAAAACGACGGAGA 60.249 50.000 0.00 0.00 0.00 3.71
6053 6500 0.856641 CGCTCAAAAACGACGGAGAA 59.143 50.000 0.00 0.00 0.00 2.87
6055 6502 1.865340 GCTCAAAAACGACGGAGAACT 59.135 47.619 0.00 0.00 0.00 3.01
6058 6506 1.263217 CAAAAACGACGGAGAACTGGG 59.737 52.381 0.00 0.00 0.00 4.45
6062 6510 2.280552 CGACGGAGAACTGGGGGAA 61.281 63.158 0.00 0.00 0.00 3.97
6119 6567 2.887360 GCGACAATGGCCAGCAAT 59.113 55.556 13.05 0.00 0.00 3.56
6120 6568 2.105984 GCGACAATGGCCAGCAATA 58.894 52.632 13.05 0.00 0.00 1.90
6121 6569 0.029834 GCGACAATGGCCAGCAATAG 59.970 55.000 13.05 1.77 0.00 1.73
6122 6570 1.382522 CGACAATGGCCAGCAATAGT 58.617 50.000 13.05 2.68 0.00 2.12
6123 6571 2.560504 CGACAATGGCCAGCAATAGTA 58.439 47.619 13.05 0.00 0.00 1.82
6124 6572 2.287915 CGACAATGGCCAGCAATAGTAC 59.712 50.000 13.05 0.00 0.00 2.73
6125 6573 3.545703 GACAATGGCCAGCAATAGTACT 58.454 45.455 13.05 0.00 0.00 2.73
6132 6580 4.123506 GGCCAGCAATAGTACTCTCTTTC 58.876 47.826 0.00 0.00 0.00 2.62
6134 6582 5.047188 GCCAGCAATAGTACTCTCTTTCTC 58.953 45.833 0.00 0.00 0.00 2.87
6135 6583 5.596845 CCAGCAATAGTACTCTCTTTCTCC 58.403 45.833 0.00 0.00 0.00 3.71
6137 6585 6.127196 CCAGCAATAGTACTCTCTTTCTCCTT 60.127 42.308 0.00 0.00 0.00 3.36
6140 6588 8.038351 AGCAATAGTACTCTCTTTCTCCTTTTC 58.962 37.037 0.00 0.00 0.00 2.29
6141 6589 8.038351 GCAATAGTACTCTCTTTCTCCTTTTCT 58.962 37.037 0.00 0.00 0.00 2.52
6142 6590 9.936759 CAATAGTACTCTCTTTCTCCTTTTCTT 57.063 33.333 0.00 0.00 0.00 2.52
6147 6595 9.332502 GTACTCTCTTTCTCCTTTTCTTTTTCT 57.667 33.333 0.00 0.00 0.00 2.52
6148 6596 8.219546 ACTCTCTTTCTCCTTTTCTTTTTCTG 57.780 34.615 0.00 0.00 0.00 3.02
6149 6597 7.831690 ACTCTCTTTCTCCTTTTCTTTTTCTGT 59.168 33.333 0.00 0.00 0.00 3.41
6150 6598 8.581253 TCTCTTTCTCCTTTTCTTTTTCTGTT 57.419 30.769 0.00 0.00 0.00 3.16
6151 6599 9.025041 TCTCTTTCTCCTTTTCTTTTTCTGTTT 57.975 29.630 0.00 0.00 0.00 2.83
6152 6600 9.645059 CTCTTTCTCCTTTTCTTTTTCTGTTTT 57.355 29.630 0.00 0.00 0.00 2.43
6153 6601 9.639601 TCTTTCTCCTTTTCTTTTTCTGTTTTC 57.360 29.630 0.00 0.00 0.00 2.29
6154 6602 9.423061 CTTTCTCCTTTTCTTTTTCTGTTTTCA 57.577 29.630 0.00 0.00 0.00 2.69
6155 6603 8.757164 TTCTCCTTTTCTTTTTCTGTTTTCAC 57.243 30.769 0.00 0.00 0.00 3.18
6156 6604 8.122472 TCTCCTTTTCTTTTTCTGTTTTCACT 57.878 30.769 0.00 0.00 0.00 3.41
6157 6605 9.238368 TCTCCTTTTCTTTTTCTGTTTTCACTA 57.762 29.630 0.00 0.00 0.00 2.74
6166 6614 0.317799 TGTTTTCACTAGGCGGCGTA 59.682 50.000 9.37 2.12 0.00 4.42
6178 6626 2.105729 GGCGTAGACGGGGTTAGC 59.894 66.667 3.97 0.00 40.23 3.09
6191 6639 1.202818 GGGTTAGCTATGGGCCTTCTG 60.203 57.143 4.53 0.00 43.05 3.02
6202 6650 4.183686 CCTTCTGGGCGCGCAATG 62.184 66.667 34.42 20.79 0.00 2.82
6203 6651 4.183686 CTTCTGGGCGCGCAATGG 62.184 66.667 34.42 18.81 0.00 3.16
6223 6671 3.030652 CGCGAGGCAAAAACACCT 58.969 55.556 0.00 0.00 39.65 4.00
6224 6672 1.358759 CGCGAGGCAAAAACACCTT 59.641 52.632 0.00 0.00 36.05 3.50
6225 6673 0.660300 CGCGAGGCAAAAACACCTTC 60.660 55.000 0.00 0.00 36.05 3.46
6226 6674 0.318699 GCGAGGCAAAAACACCTTCC 60.319 55.000 0.00 0.00 36.05 3.46
6227 6675 1.028905 CGAGGCAAAAACACCTTCCA 58.971 50.000 0.00 0.00 36.05 3.53
6228 6676 1.269051 CGAGGCAAAAACACCTTCCAC 60.269 52.381 0.00 0.00 36.05 4.02
6229 6677 1.754226 GAGGCAAAAACACCTTCCACA 59.246 47.619 0.00 0.00 36.05 4.17
6230 6678 2.167487 GAGGCAAAAACACCTTCCACAA 59.833 45.455 0.00 0.00 36.05 3.33
6231 6679 2.569404 AGGCAAAAACACCTTCCACAAA 59.431 40.909 0.00 0.00 29.74 2.83
6232 6680 3.008485 AGGCAAAAACACCTTCCACAAAA 59.992 39.130 0.00 0.00 29.74 2.44
6233 6681 3.126171 GGCAAAAACACCTTCCACAAAAC 59.874 43.478 0.00 0.00 0.00 2.43
6234 6682 3.126171 GCAAAAACACCTTCCACAAAACC 59.874 43.478 0.00 0.00 0.00 3.27
6235 6683 4.319177 CAAAAACACCTTCCACAAAACCA 58.681 39.130 0.00 0.00 0.00 3.67
6236 6684 3.885724 AAACACCTTCCACAAAACCAG 57.114 42.857 0.00 0.00 0.00 4.00
6237 6685 1.775385 ACACCTTCCACAAAACCAGG 58.225 50.000 0.00 0.00 0.00 4.45
6238 6686 0.389025 CACCTTCCACAAAACCAGGC 59.611 55.000 0.00 0.00 0.00 4.85
6239 6687 0.759060 ACCTTCCACAAAACCAGGCC 60.759 55.000 0.00 0.00 0.00 5.19
6240 6688 0.758685 CCTTCCACAAAACCAGGCCA 60.759 55.000 5.01 0.00 0.00 5.36
6241 6689 0.389025 CTTCCACAAAACCAGGCCAC 59.611 55.000 5.01 0.00 0.00 5.01
6242 6690 1.045911 TTCCACAAAACCAGGCCACC 61.046 55.000 5.01 0.00 0.00 4.61
6243 6691 1.457455 CCACAAAACCAGGCCACCT 60.457 57.895 5.01 0.00 0.00 4.00
6262 6710 4.892002 GGAACCAACTTGGACGGT 57.108 55.556 15.14 0.00 40.96 4.83
6263 6711 3.105187 GGAACCAACTTGGACGGTT 57.895 52.632 15.14 0.00 45.64 4.44
6264 6712 2.259266 GGAACCAACTTGGACGGTTA 57.741 50.000 15.14 0.00 43.04 2.85
6265 6713 2.148768 GGAACCAACTTGGACGGTTAG 58.851 52.381 15.14 0.00 43.04 2.34
6266 6714 2.148768 GAACCAACTTGGACGGTTAGG 58.851 52.381 15.14 0.00 43.04 2.69
6267 6715 1.134228 ACCAACTTGGACGGTTAGGT 58.866 50.000 15.14 0.00 40.96 3.08
6268 6716 1.202722 ACCAACTTGGACGGTTAGGTG 60.203 52.381 15.14 0.00 40.96 4.00
6269 6717 1.519408 CAACTTGGACGGTTAGGTGG 58.481 55.000 0.00 0.00 0.00 4.61
6270 6718 1.071071 CAACTTGGACGGTTAGGTGGA 59.929 52.381 0.00 0.00 0.00 4.02
6271 6719 0.683412 ACTTGGACGGTTAGGTGGAC 59.317 55.000 0.00 0.00 0.00 4.02
6272 6720 0.682852 CTTGGACGGTTAGGTGGACA 59.317 55.000 0.00 0.00 0.00 4.02
6273 6721 0.393820 TTGGACGGTTAGGTGGACAC 59.606 55.000 0.00 0.00 0.00 3.67
6274 6722 0.470456 TGGACGGTTAGGTGGACACT 60.470 55.000 2.13 0.00 0.00 3.55
6275 6723 0.245813 GGACGGTTAGGTGGACACTC 59.754 60.000 2.13 0.00 0.00 3.51
6276 6724 0.109412 GACGGTTAGGTGGACACTCG 60.109 60.000 2.13 2.73 0.00 4.18
6277 6725 1.445582 CGGTTAGGTGGACACTCGC 60.446 63.158 2.13 0.00 0.00 5.03
6278 6726 1.669440 GGTTAGGTGGACACTCGCA 59.331 57.895 2.13 0.00 0.00 5.10
6279 6727 0.249398 GGTTAGGTGGACACTCGCAT 59.751 55.000 2.13 0.00 0.00 4.73
6280 6728 1.338769 GGTTAGGTGGACACTCGCATT 60.339 52.381 2.13 0.00 0.00 3.56
6281 6729 2.423577 GTTAGGTGGACACTCGCATTT 58.576 47.619 2.13 0.00 0.00 2.32
6282 6730 3.592059 GTTAGGTGGACACTCGCATTTA 58.408 45.455 2.13 0.00 0.00 1.40
6283 6731 4.189231 GTTAGGTGGACACTCGCATTTAT 58.811 43.478 2.13 0.00 0.00 1.40
6284 6732 3.350219 AGGTGGACACTCGCATTTATT 57.650 42.857 2.13 0.00 0.00 1.40
6285 6733 3.270877 AGGTGGACACTCGCATTTATTC 58.729 45.455 2.13 0.00 0.00 1.75
6286 6734 3.055094 AGGTGGACACTCGCATTTATTCT 60.055 43.478 2.13 0.00 0.00 2.40
6287 6735 3.689649 GGTGGACACTCGCATTTATTCTT 59.310 43.478 2.13 0.00 0.00 2.52
6288 6736 4.156008 GGTGGACACTCGCATTTATTCTTT 59.844 41.667 2.13 0.00 0.00 2.52
6289 6737 5.353123 GGTGGACACTCGCATTTATTCTTTA 59.647 40.000 2.13 0.00 0.00 1.85
6290 6738 6.038271 GGTGGACACTCGCATTTATTCTTTAT 59.962 38.462 2.13 0.00 0.00 1.40
6291 6739 7.415206 GGTGGACACTCGCATTTATTCTTTATT 60.415 37.037 2.13 0.00 0.00 1.40
6292 6740 7.640240 GTGGACACTCGCATTTATTCTTTATTC 59.360 37.037 0.00 0.00 0.00 1.75
6293 6741 6.846283 GGACACTCGCATTTATTCTTTATTCG 59.154 38.462 0.00 0.00 0.00 3.34
6294 6742 7.254319 GGACACTCGCATTTATTCTTTATTCGA 60.254 37.037 0.00 0.00 0.00 3.71
6295 6743 7.621991 ACACTCGCATTTATTCTTTATTCGAG 58.378 34.615 0.00 0.00 44.23 4.04
6296 6744 7.065894 CACTCGCATTTATTCTTTATTCGAGG 58.934 38.462 11.58 0.00 43.33 4.63
6297 6745 6.984474 ACTCGCATTTATTCTTTATTCGAGGA 59.016 34.615 11.58 0.00 43.33 3.71
6298 6746 7.657761 ACTCGCATTTATTCTTTATTCGAGGAT 59.342 33.333 11.58 0.00 43.33 3.24
6299 6747 8.378172 TCGCATTTATTCTTTATTCGAGGATT 57.622 30.769 0.00 0.00 0.00 3.01
6300 6748 8.836413 TCGCATTTATTCTTTATTCGAGGATTT 58.164 29.630 0.00 0.00 0.00 2.17
6301 6749 9.450807 CGCATTTATTCTTTATTCGAGGATTTT 57.549 29.630 0.00 0.00 0.00 1.82
6305 6753 5.479716 TTCTTTATTCGAGGATTTTCGGC 57.520 39.130 0.00 0.00 40.83 5.54
6306 6754 3.554324 TCTTTATTCGAGGATTTTCGGCG 59.446 43.478 0.00 0.00 40.83 6.46
6307 6755 2.875087 TATTCGAGGATTTTCGGCGA 57.125 45.000 4.99 4.99 40.83 5.54
6308 6756 2.240493 ATTCGAGGATTTTCGGCGAT 57.760 45.000 11.76 0.00 40.83 4.58
6309 6757 1.286501 TTCGAGGATTTTCGGCGATG 58.713 50.000 11.76 0.00 40.83 3.84
6310 6758 1.151777 TCGAGGATTTTCGGCGATGC 61.152 55.000 11.76 0.31 40.83 3.91
6311 6759 1.276844 GAGGATTTTCGGCGATGCG 59.723 57.895 11.76 0.00 0.00 4.73
6312 6760 1.429148 GAGGATTTTCGGCGATGCGT 61.429 55.000 11.76 1.95 0.00 5.24
6313 6761 1.297598 GGATTTTCGGCGATGCGTG 60.298 57.895 11.76 0.00 0.00 5.34
6314 6762 1.423845 GATTTTCGGCGATGCGTGT 59.576 52.632 11.76 0.00 0.00 4.49
6315 6763 0.179200 GATTTTCGGCGATGCGTGTT 60.179 50.000 11.76 0.00 0.00 3.32
6316 6764 0.179200 ATTTTCGGCGATGCGTGTTC 60.179 50.000 11.76 0.00 0.00 3.18
6317 6765 1.499688 TTTTCGGCGATGCGTGTTCA 61.500 50.000 11.76 0.00 0.00 3.18
6318 6766 1.896339 TTTCGGCGATGCGTGTTCAG 61.896 55.000 11.76 0.00 0.00 3.02
6319 6767 3.853330 CGGCGATGCGTGTTCAGG 61.853 66.667 0.00 0.00 0.00 3.86
6320 6768 3.499737 GGCGATGCGTGTTCAGGG 61.500 66.667 0.00 0.00 0.00 4.45
6321 6769 2.434185 GCGATGCGTGTTCAGGGA 60.434 61.111 0.00 0.00 0.00 4.20
6322 6770 2.456119 GCGATGCGTGTTCAGGGAG 61.456 63.158 0.00 0.00 0.00 4.30
6323 6771 1.215382 CGATGCGTGTTCAGGGAGA 59.785 57.895 0.00 0.00 0.00 3.71
6324 6772 0.803768 CGATGCGTGTTCAGGGAGAG 60.804 60.000 0.00 0.00 0.00 3.20
6325 6773 0.460987 GATGCGTGTTCAGGGAGAGG 60.461 60.000 0.00 0.00 0.00 3.69
6326 6774 0.904865 ATGCGTGTTCAGGGAGAGGA 60.905 55.000 0.00 0.00 0.00 3.71
6327 6775 1.216710 GCGTGTTCAGGGAGAGGAG 59.783 63.158 0.00 0.00 0.00 3.69
6328 6776 1.251527 GCGTGTTCAGGGAGAGGAGA 61.252 60.000 0.00 0.00 0.00 3.71
6329 6777 1.479709 CGTGTTCAGGGAGAGGAGAT 58.520 55.000 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.881775 AATGTATCCCTTAAAGGTTAGCTTG 57.118 36.000 0.00 0.00 31.93 4.01
15 16 9.562408 TGCGTATTTCATAAATGTATCCCTTAA 57.438 29.630 0.00 0.00 32.38 1.85
16 17 9.733556 ATGCGTATTTCATAAATGTATCCCTTA 57.266 29.630 0.00 0.00 32.38 2.69
17 18 8.514594 CATGCGTATTTCATAAATGTATCCCTT 58.485 33.333 0.00 0.00 32.38 3.95
18 19 7.362056 GCATGCGTATTTCATAAATGTATCCCT 60.362 37.037 0.00 0.00 32.38 4.20
19 20 6.747280 GCATGCGTATTTCATAAATGTATCCC 59.253 38.462 0.00 0.00 32.38 3.85
20 21 7.304735 TGCATGCGTATTTCATAAATGTATCC 58.695 34.615 14.09 0.00 32.38 2.59
21 22 8.017373 ACTGCATGCGTATTTCATAAATGTATC 58.983 33.333 14.09 0.00 32.38 2.24
22 23 7.804600 CACTGCATGCGTATTTCATAAATGTAT 59.195 33.333 14.09 0.00 32.38 2.29
23 24 7.131565 CACTGCATGCGTATTTCATAAATGTA 58.868 34.615 14.09 0.00 32.38 2.29
24 25 5.972973 CACTGCATGCGTATTTCATAAATGT 59.027 36.000 14.09 0.00 32.38 2.71
25 26 5.972973 ACACTGCATGCGTATTTCATAAATG 59.027 36.000 14.09 0.00 32.38 2.32
26 27 6.135290 ACACTGCATGCGTATTTCATAAAT 57.865 33.333 14.09 0.00 34.90 1.40
27 28 5.559427 ACACTGCATGCGTATTTCATAAA 57.441 34.783 14.09 0.00 0.00 1.40
28 29 5.582665 TGTACACTGCATGCGTATTTCATAA 59.417 36.000 14.09 0.00 0.00 1.90
29 30 5.112686 TGTACACTGCATGCGTATTTCATA 58.887 37.500 14.09 0.00 0.00 2.15
30 31 3.938334 TGTACACTGCATGCGTATTTCAT 59.062 39.130 14.09 0.00 0.00 2.57
31 32 3.330267 TGTACACTGCATGCGTATTTCA 58.670 40.909 14.09 5.79 0.00 2.69
32 33 4.335082 TTGTACACTGCATGCGTATTTC 57.665 40.909 14.09 3.12 0.00 2.17
33 34 4.757799 TTTGTACACTGCATGCGTATTT 57.242 36.364 14.09 4.87 0.00 1.40
34 35 4.757799 TTTTGTACACTGCATGCGTATT 57.242 36.364 14.09 7.11 0.00 1.89
35 36 4.757799 TTTTTGTACACTGCATGCGTAT 57.242 36.364 14.09 5.96 0.00 3.06
53 54 6.103330 ACTTAAAAGTTGCACGGACATTTTT 58.897 32.000 0.00 0.00 35.21 1.94
54 55 5.656480 ACTTAAAAGTTGCACGGACATTTT 58.344 33.333 0.00 0.00 35.21 1.82
55 56 5.257082 ACTTAAAAGTTGCACGGACATTT 57.743 34.783 0.00 0.00 35.21 2.32
56 57 4.911514 ACTTAAAAGTTGCACGGACATT 57.088 36.364 0.00 0.00 35.21 2.71
57 58 6.016610 ACATTACTTAAAAGTTGCACGGACAT 60.017 34.615 0.00 0.00 40.37 3.06
58 59 5.297278 ACATTACTTAAAAGTTGCACGGACA 59.703 36.000 0.00 0.00 40.37 4.02
59 60 5.754778 ACATTACTTAAAAGTTGCACGGAC 58.245 37.500 0.00 0.00 40.37 4.79
60 61 6.380095 AACATTACTTAAAAGTTGCACGGA 57.620 33.333 0.00 0.00 40.37 4.69
61 62 8.736751 ATTAACATTACTTAAAAGTTGCACGG 57.263 30.769 0.00 0.00 40.37 4.94
114 115 7.428761 CACATTTTTGAACATGCGAACATTTTT 59.571 29.630 0.00 0.00 32.87 1.94
115 116 6.906143 CACATTTTTGAACATGCGAACATTTT 59.094 30.769 0.00 0.00 32.87 1.82
116 117 6.420588 CACATTTTTGAACATGCGAACATTT 58.579 32.000 0.00 0.00 32.87 2.32
117 118 5.558653 GCACATTTTTGAACATGCGAACATT 60.559 36.000 0.00 0.00 32.87 2.71
118 119 4.084433 GCACATTTTTGAACATGCGAACAT 60.084 37.500 0.00 0.00 36.79 2.71
119 120 3.244814 GCACATTTTTGAACATGCGAACA 59.755 39.130 0.00 0.00 0.00 3.18
120 121 3.244814 TGCACATTTTTGAACATGCGAAC 59.755 39.130 0.00 0.00 35.83 3.95
121 122 3.451526 TGCACATTTTTGAACATGCGAA 58.548 36.364 0.00 0.00 35.83 4.70
122 123 3.089573 TGCACATTTTTGAACATGCGA 57.910 38.095 0.00 0.00 35.83 5.10
123 124 3.184783 ACATGCACATTTTTGAACATGCG 59.815 39.130 0.00 0.00 38.72 4.73
124 125 4.735662 ACATGCACATTTTTGAACATGC 57.264 36.364 0.00 0.00 38.72 4.06
125 126 7.175073 TGTAACATGCACATTTTTGAACATG 57.825 32.000 0.00 0.00 40.48 3.21
126 127 7.441760 ACATGTAACATGCACATTTTTGAACAT 59.558 29.630 10.10 0.00 34.39 2.71
127 128 6.760298 ACATGTAACATGCACATTTTTGAACA 59.240 30.769 10.10 0.00 34.39 3.18
128 129 7.176285 ACATGTAACATGCACATTTTTGAAC 57.824 32.000 10.10 0.00 34.39 3.18
129 130 8.877808 TTACATGTAACATGCACATTTTTGAA 57.122 26.923 14.35 0.00 34.39 2.69
130 131 8.877808 TTTACATGTAACATGCACATTTTTGA 57.122 26.923 17.85 0.00 34.39 2.69
131 132 9.926751 TTTTTACATGTAACATGCACATTTTTG 57.073 25.926 17.85 4.83 34.39 2.44
161 162 9.748708 CCTGAAGATATTTTTCAAACAAGTGAA 57.251 29.630 5.46 0.00 34.41 3.18
162 163 7.867403 GCCTGAAGATATTTTTCAAACAAGTGA 59.133 33.333 5.46 0.00 34.41 3.41
163 164 7.116805 GGCCTGAAGATATTTTTCAAACAAGTG 59.883 37.037 0.00 0.00 34.41 3.16
164 165 7.154656 GGCCTGAAGATATTTTTCAAACAAGT 58.845 34.615 0.00 0.00 34.41 3.16
165 166 7.153985 TGGCCTGAAGATATTTTTCAAACAAG 58.846 34.615 3.32 0.00 34.41 3.16
166 167 7.060383 TGGCCTGAAGATATTTTTCAAACAA 57.940 32.000 3.32 0.00 34.41 2.83
167 168 6.662865 TGGCCTGAAGATATTTTTCAAACA 57.337 33.333 3.32 3.18 34.41 2.83
168 169 8.552083 AAATGGCCTGAAGATATTTTTCAAAC 57.448 30.769 3.32 1.88 34.41 2.93
169 170 9.571816 AAAAATGGCCTGAAGATATTTTTCAAA 57.428 25.926 3.32 0.00 36.67 2.69
171 172 9.874205 CTAAAAATGGCCTGAAGATATTTTTCA 57.126 29.630 18.44 8.88 39.89 2.69
336 337 9.915629 TTCGCCTGTTTTTGTATATTGTTAAAT 57.084 25.926 0.00 0.00 0.00 1.40
337 338 9.915629 ATTCGCCTGTTTTTGTATATTGTTAAA 57.084 25.926 0.00 0.00 0.00 1.52
338 339 9.915629 AATTCGCCTGTTTTTGTATATTGTTAA 57.084 25.926 0.00 0.00 0.00 2.01
339 340 9.562583 GAATTCGCCTGTTTTTGTATATTGTTA 57.437 29.630 0.00 0.00 0.00 2.41
340 341 7.544217 GGAATTCGCCTGTTTTTGTATATTGTT 59.456 33.333 0.00 0.00 0.00 2.83
341 342 7.033185 GGAATTCGCCTGTTTTTGTATATTGT 58.967 34.615 0.00 0.00 0.00 2.71
342 343 6.475402 GGGAATTCGCCTGTTTTTGTATATTG 59.525 38.462 11.31 0.00 0.00 1.90
343 344 6.379988 AGGGAATTCGCCTGTTTTTGTATATT 59.620 34.615 18.08 0.00 0.00 1.28
344 345 5.891551 AGGGAATTCGCCTGTTTTTGTATAT 59.108 36.000 18.08 0.00 0.00 0.86
345 346 5.124776 CAGGGAATTCGCCTGTTTTTGTATA 59.875 40.000 24.19 0.00 32.87 1.47
346 347 4.082245 CAGGGAATTCGCCTGTTTTTGTAT 60.082 41.667 24.19 1.98 32.87 2.29
347 348 3.254657 CAGGGAATTCGCCTGTTTTTGTA 59.745 43.478 24.19 0.00 32.87 2.41
348 349 2.035832 CAGGGAATTCGCCTGTTTTTGT 59.964 45.455 24.19 3.00 32.87 2.83
349 350 2.676076 CAGGGAATTCGCCTGTTTTTG 58.324 47.619 24.19 11.25 32.87 2.44
356 357 1.789523 TACTAGCAGGGAATTCGCCT 58.210 50.000 18.08 13.25 0.00 5.52
399 400 3.230134 CCTCTCCTGGACTCTAATCTGG 58.770 54.545 0.00 0.00 0.00 3.86
400 401 3.230134 CCCTCTCCTGGACTCTAATCTG 58.770 54.545 0.00 0.00 0.00 2.90
532 562 0.314935 GTGCACAGAAATGGGTGGTG 59.685 55.000 13.17 0.00 35.58 4.17
561 591 3.468071 TTGGAAGAGAGTGGTAGGCTA 57.532 47.619 0.00 0.00 0.00 3.93
812 867 5.918608 TCCTCATATCTTTAGTGAGCCAAC 58.081 41.667 0.00 0.00 38.38 3.77
815 870 5.918608 TGTTCCTCATATCTTTAGTGAGCC 58.081 41.667 0.00 0.00 38.38 4.70
818 873 9.547753 GCTAAATGTTCCTCATATCTTTAGTGA 57.452 33.333 0.00 0.00 35.48 3.41
820 875 9.553064 CTGCTAAATGTTCCTCATATCTTTAGT 57.447 33.333 0.00 0.00 35.48 2.24
837 903 3.219198 GGCCGGGGCTGCTAAATG 61.219 66.667 14.22 0.00 41.60 2.32
838 904 3.721370 CTGGCCGGGGCTGCTAAAT 62.721 63.158 22.12 0.00 41.60 1.40
880 946 0.325110 CAGAGCTGGGAGGAGGAAGA 60.325 60.000 0.00 0.00 0.00 2.87
916 982 0.810823 GCTCTGGCTCTGCTCATCAC 60.811 60.000 0.00 0.00 35.22 3.06
942 1011 4.811364 GCAGGAGGAGGGCAAGGC 62.811 72.222 0.00 0.00 0.00 4.35
1120 1189 3.242673 GCTTGAGCGAGAAATTCAGATGG 60.243 47.826 0.00 0.00 0.00 3.51
1121 1190 3.937874 GCTTGAGCGAGAAATTCAGATG 58.062 45.455 0.00 0.00 0.00 2.90
1236 1305 6.868339 ACCAATAGTTCTTTGCTGTAAATTGC 59.132 34.615 0.00 0.00 0.00 3.56
1445 1534 0.594602 CCTTGACGTCGTACCTGTCA 59.405 55.000 11.62 5.62 40.62 3.58
1523 1612 4.664267 AGCTCCCTCACCAGGCCA 62.664 66.667 5.01 0.00 38.72 5.36
1985 2074 1.407851 GCATCCAGCTTCACCATGAGA 60.408 52.381 0.00 0.00 41.15 3.27
2199 2298 5.056894 ACACTACACGGATAGAGACAAAC 57.943 43.478 2.53 0.00 0.00 2.93
2339 2443 9.480053 CATGAGTCTTATTGATTGGTTTGTTTT 57.520 29.630 0.00 0.00 0.00 2.43
2348 2452 6.199908 GTCCGTCTCATGAGTCTTATTGATTG 59.800 42.308 21.92 1.35 0.00 2.67
2354 2458 2.619177 CGGTCCGTCTCATGAGTCTTAT 59.381 50.000 21.92 0.00 0.00 1.73
2360 2464 0.803768 CTTGCGGTCCGTCTCATGAG 60.804 60.000 17.07 17.07 0.00 2.90
2417 2521 3.636300 TGCCCAGATAACAATGTTATGGC 59.364 43.478 26.22 26.22 35.75 4.40
2460 2564 9.688592 GGAAGAAAATTGCATTTATCCTGATAG 57.311 33.333 8.71 0.00 31.89 2.08
2528 2632 9.862371 TGAAATACTAACTCTCATTCTCTCAAC 57.138 33.333 0.00 0.00 0.00 3.18
2533 2637 9.691362 GGATCTGAAATACTAACTCTCATTCTC 57.309 37.037 0.00 0.00 0.00 2.87
2534 2638 9.206690 TGGATCTGAAATACTAACTCTCATTCT 57.793 33.333 0.00 0.00 0.00 2.40
2535 2639 9.823647 TTGGATCTGAAATACTAACTCTCATTC 57.176 33.333 0.00 0.00 0.00 2.67
2538 2642 9.823647 GATTTGGATCTGAAATACTAACTCTCA 57.176 33.333 0.00 0.00 0.00 3.27
2539 2643 9.823647 TGATTTGGATCTGAAATACTAACTCTC 57.176 33.333 0.00 0.00 33.28 3.20
2557 2661 5.243730 GGAACTTCTGGAATTGTGATTTGGA 59.756 40.000 0.00 0.00 0.00 3.53
2573 2677 5.537674 AGCATTCTTCATTTGTGGAACTTCT 59.462 36.000 0.00 0.00 38.04 2.85
2636 2743 9.474313 AGGAAGTATGCCATGAAAAAGTATTAA 57.526 29.630 0.00 0.00 34.43 1.40
2637 2744 9.120538 GAGGAAGTATGCCATGAAAAAGTATTA 57.879 33.333 0.00 0.00 34.43 0.98
2638 2745 7.615365 TGAGGAAGTATGCCATGAAAAAGTATT 59.385 33.333 0.00 0.00 34.43 1.89
2684 2817 5.241728 ACTCTGCATGATGAATTGATGATGG 59.758 40.000 6.48 0.00 0.00 3.51
2687 2820 5.433526 TCACTCTGCATGATGAATTGATGA 58.566 37.500 0.00 0.00 0.00 2.92
2688 2821 5.751243 TCACTCTGCATGATGAATTGATG 57.249 39.130 0.00 0.00 0.00 3.07
2747 2880 3.192844 TCAGGTCCTCGTTTGTATGTCTC 59.807 47.826 0.00 0.00 0.00 3.36
2753 2886 3.724374 CTTTGTCAGGTCCTCGTTTGTA 58.276 45.455 0.00 0.00 0.00 2.41
3008 3141 1.219393 GGAAGAAGGTGCGGAGGAG 59.781 63.158 0.00 0.00 0.00 3.69
3339 3472 4.002982 CCTTCCACATTCTTCGACATCAA 58.997 43.478 0.00 0.00 0.00 2.57
3356 3489 2.119801 TCTCATCAGCAAAGCCTTCC 57.880 50.000 0.00 0.00 0.00 3.46
3365 3498 1.069204 GCGGGATACTTCTCATCAGCA 59.931 52.381 0.00 0.00 31.82 4.41
3455 3588 0.179086 CACCACCAAACCTTTGTGCC 60.179 55.000 0.00 0.00 36.45 5.01
3554 3687 3.820467 CACCAGGTTCAGAATTAACTGCA 59.180 43.478 0.00 0.00 37.75 4.41
3555 3688 4.072131 TCACCAGGTTCAGAATTAACTGC 58.928 43.478 0.00 0.00 37.75 4.40
3650 3783 3.400054 GGACGGGGGACTCTTGGG 61.400 72.222 0.00 0.00 0.00 4.12
3939 4072 5.056480 TCTGTTGTCAGAAACATTCGATGT 58.944 37.500 0.00 0.00 46.17 3.06
3956 4089 2.743664 TCCGATCATGTTGCTTCTGTTG 59.256 45.455 0.00 0.00 0.00 3.33
3974 4107 4.645762 TGATCTGTTCTCAATCTCTCCG 57.354 45.455 0.00 0.00 0.00 4.63
4032 4165 2.093553 TGGCAGGATTTTTATGCAAGGC 60.094 45.455 0.00 0.00 41.78 4.35
4035 4168 5.184711 GGATTTGGCAGGATTTTTATGCAA 58.815 37.500 0.00 0.00 41.78 4.08
4036 4169 4.224594 TGGATTTGGCAGGATTTTTATGCA 59.775 37.500 0.00 0.00 41.78 3.96
4062 4195 2.602257 TCTGCACTAATGATGGACGG 57.398 50.000 0.00 0.00 0.00 4.79
4081 4214 7.857404 AGTTATACCTACTGCCTACAATGAT 57.143 36.000 0.00 0.00 0.00 2.45
4204 4337 4.500116 GCTCGGACCTCACTCGCC 62.500 72.222 0.00 0.00 0.00 5.54
4249 4382 1.266718 AGCCAGTGTACAAATGCAACG 59.733 47.619 0.00 0.00 0.00 4.10
4374 4507 5.350914 CACTGCTCTCTCATCAACCTAAAAG 59.649 44.000 0.00 0.00 0.00 2.27
4500 4633 2.224090 TGGAAGTTTTGGATCGTCGACA 60.224 45.455 17.16 3.13 0.00 4.35
4536 4669 5.245531 TCAAGCAACGAATACATCCTCTTT 58.754 37.500 0.00 0.00 0.00 2.52
4739 4874 1.418334 AACACTCTGCTCCACTCTGT 58.582 50.000 0.00 0.00 0.00 3.41
4858 4993 5.242615 CCAGCATAAGTAGTCTAGAGATGCA 59.757 44.000 16.47 0.00 40.47 3.96
4859 4994 5.708948 CCAGCATAAGTAGTCTAGAGATGC 58.291 45.833 0.00 10.05 38.75 3.91
4863 4998 4.558496 GCTGCCAGCATAAGTAGTCTAGAG 60.558 50.000 12.82 0.00 41.89 2.43
4868 5017 1.139853 AGGCTGCCAGCATAAGTAGTC 59.860 52.381 22.65 0.00 44.75 2.59
4879 5028 3.334583 TCAAGTAAGTAAGGCTGCCAG 57.665 47.619 22.65 0.00 0.00 4.85
5024 5176 3.307691 CCCTCTCCATGTACTTCTTTGCA 60.308 47.826 0.00 0.00 0.00 4.08
5067 5219 2.032528 TTTCTCGGTGCCCTGCAG 59.967 61.111 6.78 6.78 40.08 4.41
5129 5281 4.819105 ACATACCTGATGAACTCGGAAA 57.181 40.909 0.00 0.00 39.06 3.13
5158 5323 8.978874 TGCCTGTAAATACTCATATTGTTGAT 57.021 30.769 0.00 0.00 31.07 2.57
5165 5330 8.995027 TTCCATTTGCCTGTAAATACTCATAT 57.005 30.769 0.00 0.00 0.00 1.78
5175 5340 7.117523 CGATTTGAAATTTCCATTTGCCTGTAA 59.882 33.333 15.48 0.00 32.35 2.41
5178 5343 5.638657 TCGATTTGAAATTTCCATTTGCCTG 59.361 36.000 15.48 0.00 32.35 4.85
5179 5344 5.792741 TCGATTTGAAATTTCCATTTGCCT 58.207 33.333 15.48 0.00 32.35 4.75
5180 5345 5.868801 TCTCGATTTGAAATTTCCATTTGCC 59.131 36.000 15.48 0.00 32.35 4.52
5181 5346 6.454715 GCTCTCGATTTGAAATTTCCATTTGC 60.455 38.462 15.48 5.13 32.35 3.68
5184 5349 6.521151 AGCTCTCGATTTGAAATTTCCATT 57.479 33.333 15.48 1.20 0.00 3.16
5185 5350 6.521151 AAGCTCTCGATTTGAAATTTCCAT 57.479 33.333 15.48 7.61 0.00 3.41
5187 5352 5.960105 CGTAAGCTCTCGATTTGAAATTTCC 59.040 40.000 15.48 0.00 0.00 3.13
5190 5362 4.935808 ACCGTAAGCTCTCGATTTGAAATT 59.064 37.500 11.22 0.00 0.00 1.82
5201 5373 0.179108 ATGGCGAACCGTAAGCTCTC 60.179 55.000 0.00 0.00 39.70 3.20
5205 5377 1.226295 GCAATGGCGAACCGTAAGC 60.226 57.895 0.00 0.00 39.70 3.09
5349 5543 2.069273 CAACTAGTTGTGCCCTCGAAG 58.931 52.381 24.70 0.00 35.92 3.79
5352 5546 1.298859 GCCAACTAGTTGTGCCCTCG 61.299 60.000 29.05 15.74 38.85 4.63
5502 5704 1.821216 ACTGCCCGGTTACAGAATTG 58.179 50.000 19.75 0.00 37.35 2.32
5619 6039 9.535270 CATTTTAATCTGACGAGTTTTTCTCTC 57.465 33.333 0.00 0.00 40.75 3.20
5624 6044 6.981722 AGGCATTTTAATCTGACGAGTTTTT 58.018 32.000 0.00 0.00 0.00 1.94
5649 6069 1.153549 GCTCGCCGGATTGAGTTCT 60.154 57.895 5.05 0.00 34.67 3.01
5672 6092 2.799452 GCATTACCCGCCCGTCCTA 61.799 63.158 0.00 0.00 0.00 2.94
5673 6093 4.171103 GCATTACCCGCCCGTCCT 62.171 66.667 0.00 0.00 0.00 3.85
5677 6097 2.277084 GATATTAGCATTACCCGCCCG 58.723 52.381 0.00 0.00 0.00 6.13
5703 6123 3.848272 ACTCCGGTTTTGCATACATTG 57.152 42.857 0.00 0.00 0.00 2.82
5704 6124 5.007682 AGTTACTCCGGTTTTGCATACATT 58.992 37.500 0.00 0.00 0.00 2.71
5706 6126 4.010667 AGTTACTCCGGTTTTGCATACA 57.989 40.909 0.00 0.00 0.00 2.29
5707 6127 4.214758 ACAAGTTACTCCGGTTTTGCATAC 59.785 41.667 0.00 0.00 0.00 2.39
5709 6129 3.004315 CACAAGTTACTCCGGTTTTGCAT 59.996 43.478 0.00 0.00 0.00 3.96
5710 6130 2.356382 CACAAGTTACTCCGGTTTTGCA 59.644 45.455 0.00 0.00 0.00 4.08
5716 6137 1.045407 TCAGCACAAGTTACTCCGGT 58.955 50.000 0.00 0.00 0.00 5.28
5723 6144 4.955811 TCCTTCTCTTCAGCACAAGTTA 57.044 40.909 0.00 0.00 0.00 2.24
5724 6145 3.845781 TCCTTCTCTTCAGCACAAGTT 57.154 42.857 0.00 0.00 0.00 2.66
5739 6160 2.614057 CGGTGCCATGTAAGAATCCTTC 59.386 50.000 0.00 0.00 33.94 3.46
5744 6165 1.681780 CCACCGGTGCCATGTAAGAAT 60.682 52.381 29.75 0.00 0.00 2.40
5745 6166 0.322098 CCACCGGTGCCATGTAAGAA 60.322 55.000 29.75 0.00 0.00 2.52
5747 6168 1.748879 CCCACCGGTGCCATGTAAG 60.749 63.158 29.75 12.50 0.00 2.34
5758 6180 4.641645 TGCTGTTCTGCCCACCGG 62.642 66.667 0.00 0.00 0.00 5.28
5795 6229 1.526887 GCCACATAGCCCTGCAGTA 59.473 57.895 13.81 0.00 0.00 2.74
5818 6259 1.370051 GTTTTGTTCGCAGGGTCGC 60.370 57.895 0.00 0.00 0.00 5.19
5834 6275 1.447317 CGCAGCCACCTTCTGTTGTT 61.447 55.000 0.00 0.00 34.21 2.83
5836 6277 2.949106 CGCAGCCACCTTCTGTTG 59.051 61.111 0.00 0.00 34.21 3.33
5850 6291 1.588824 CTGGAATCTGCTTTGGCGCA 61.589 55.000 10.83 0.00 42.25 6.09
5852 6293 0.883833 AACTGGAATCTGCTTTGGCG 59.116 50.000 0.00 0.00 42.25 5.69
5854 6295 3.152341 ACTCAACTGGAATCTGCTTTGG 58.848 45.455 0.00 0.00 0.00 3.28
5855 6296 4.843220 AACTCAACTGGAATCTGCTTTG 57.157 40.909 0.00 0.00 0.00 2.77
5856 6297 5.006386 CCTAACTCAACTGGAATCTGCTTT 58.994 41.667 0.00 0.00 0.00 3.51
5859 6300 3.686726 CACCTAACTCAACTGGAATCTGC 59.313 47.826 0.00 0.00 0.00 4.26
5861 6302 3.307762 GGCACCTAACTCAACTGGAATCT 60.308 47.826 0.00 0.00 0.00 2.40
5862 6303 3.010420 GGCACCTAACTCAACTGGAATC 58.990 50.000 0.00 0.00 0.00 2.52
5864 6305 1.270625 CGGCACCTAACTCAACTGGAA 60.271 52.381 0.00 0.00 0.00 3.53
5865 6306 0.320374 CGGCACCTAACTCAACTGGA 59.680 55.000 0.00 0.00 0.00 3.86
5866 6307 0.034896 ACGGCACCTAACTCAACTGG 59.965 55.000 0.00 0.00 0.00 4.00
5867 6308 1.148310 CACGGCACCTAACTCAACTG 58.852 55.000 0.00 0.00 0.00 3.16
5868 6309 0.602905 GCACGGCACCTAACTCAACT 60.603 55.000 0.00 0.00 0.00 3.16
5869 6310 0.602905 AGCACGGCACCTAACTCAAC 60.603 55.000 0.00 0.00 0.00 3.18
5870 6311 0.320421 GAGCACGGCACCTAACTCAA 60.320 55.000 0.00 0.00 0.00 3.02
5898 6339 4.214327 CTTCTCCCGGCTCGCTCC 62.214 72.222 0.00 0.00 0.00 4.70
5950 6391 3.976015 TCTCTTCTCCCTCTTTCTCTCC 58.024 50.000 0.00 0.00 0.00 3.71
5951 6392 4.159693 GGTTCTCTTCTCCCTCTTTCTCTC 59.840 50.000 0.00 0.00 0.00 3.20
5952 6393 4.093743 GGTTCTCTTCTCCCTCTTTCTCT 58.906 47.826 0.00 0.00 0.00 3.10
5953 6394 3.196901 GGGTTCTCTTCTCCCTCTTTCTC 59.803 52.174 0.00 0.00 38.29 2.87
5954 6395 3.178046 GGGTTCTCTTCTCCCTCTTTCT 58.822 50.000 0.00 0.00 38.29 2.52
5955 6396 2.907042 TGGGTTCTCTTCTCCCTCTTTC 59.093 50.000 0.00 0.00 41.58 2.62
5956 6397 2.640332 GTGGGTTCTCTTCTCCCTCTTT 59.360 50.000 0.00 0.00 41.58 2.52
5957 6398 2.261729 GTGGGTTCTCTTCTCCCTCTT 58.738 52.381 0.00 0.00 41.58 2.85
6016 6463 2.590291 TTGACGCAAGCCGAAGCA 60.590 55.556 0.00 0.00 43.56 3.91
6032 6479 0.580104 CTCCGTCGTTTTTGAGCGTT 59.420 50.000 0.00 0.00 0.00 4.84
6033 6480 0.249155 TCTCCGTCGTTTTTGAGCGT 60.249 50.000 0.00 0.00 0.00 5.07
6052 6499 2.087248 CCACCTGATTCCCCCAGTT 58.913 57.895 0.00 0.00 0.00 3.16
6053 6500 2.616458 GCCACCTGATTCCCCCAGT 61.616 63.158 0.00 0.00 0.00 4.00
6055 6502 2.534011 TGCCACCTGATTCCCCCA 60.534 61.111 0.00 0.00 0.00 4.96
6058 6506 2.825836 CGCTGCCACCTGATTCCC 60.826 66.667 0.00 0.00 0.00 3.97
6114 6562 7.489239 AAAGGAGAAAGAGAGTACTATTGCT 57.511 36.000 0.00 0.00 36.10 3.91
6115 6563 8.038351 AGAAAAGGAGAAAGAGAGTACTATTGC 58.962 37.037 0.00 0.00 0.00 3.56
6120 6568 9.332502 GAAAAAGAAAAGGAGAAAGAGAGTACT 57.667 33.333 0.00 0.00 0.00 2.73
6121 6569 9.332502 AGAAAAAGAAAAGGAGAAAGAGAGTAC 57.667 33.333 0.00 0.00 0.00 2.73
6122 6570 9.331282 CAGAAAAAGAAAAGGAGAAAGAGAGTA 57.669 33.333 0.00 0.00 0.00 2.59
6123 6571 7.831690 ACAGAAAAAGAAAAGGAGAAAGAGAGT 59.168 33.333 0.00 0.00 0.00 3.24
6124 6572 8.219546 ACAGAAAAAGAAAAGGAGAAAGAGAG 57.780 34.615 0.00 0.00 0.00 3.20
6125 6573 8.581253 AACAGAAAAAGAAAAGGAGAAAGAGA 57.419 30.769 0.00 0.00 0.00 3.10
6132 6580 9.508567 CTAGTGAAAACAGAAAAAGAAAAGGAG 57.491 33.333 0.00 0.00 0.00 3.69
6134 6582 7.222805 GCCTAGTGAAAACAGAAAAAGAAAAGG 59.777 37.037 0.00 0.00 0.00 3.11
6135 6583 7.044052 CGCCTAGTGAAAACAGAAAAAGAAAAG 60.044 37.037 0.00 0.00 0.00 2.27
6137 6585 6.262601 CGCCTAGTGAAAACAGAAAAAGAAA 58.737 36.000 0.00 0.00 0.00 2.52
6140 6588 4.537015 CCGCCTAGTGAAAACAGAAAAAG 58.463 43.478 0.00 0.00 0.00 2.27
6141 6589 3.243267 GCCGCCTAGTGAAAACAGAAAAA 60.243 43.478 0.00 0.00 0.00 1.94
6142 6590 2.292292 GCCGCCTAGTGAAAACAGAAAA 59.708 45.455 0.00 0.00 0.00 2.29
6143 6591 1.877443 GCCGCCTAGTGAAAACAGAAA 59.123 47.619 0.00 0.00 0.00 2.52
6144 6592 1.519408 GCCGCCTAGTGAAAACAGAA 58.481 50.000 0.00 0.00 0.00 3.02
6147 6595 0.317799 TACGCCGCCTAGTGAAAACA 59.682 50.000 0.00 0.00 0.00 2.83
6148 6596 0.997196 CTACGCCGCCTAGTGAAAAC 59.003 55.000 0.00 0.00 0.00 2.43
6149 6597 0.889994 TCTACGCCGCCTAGTGAAAA 59.110 50.000 0.00 0.00 0.00 2.29
6150 6598 0.171903 GTCTACGCCGCCTAGTGAAA 59.828 55.000 0.00 0.00 0.00 2.69
6151 6599 1.805254 GTCTACGCCGCCTAGTGAA 59.195 57.895 0.00 0.00 0.00 3.18
6152 6600 2.466982 CGTCTACGCCGCCTAGTGA 61.467 63.158 0.00 0.00 0.00 3.41
6153 6601 2.024305 CGTCTACGCCGCCTAGTG 59.976 66.667 0.00 0.00 0.00 2.74
6154 6602 3.207669 CCGTCTACGCCGCCTAGT 61.208 66.667 0.00 0.00 38.18 2.57
6155 6603 3.962421 CCCGTCTACGCCGCCTAG 61.962 72.222 0.00 0.00 38.18 3.02
6166 6614 1.408453 GCCCATAGCTAACCCCGTCT 61.408 60.000 0.00 0.00 38.99 4.18
6204 6652 2.050442 GTGTTTTTGCCTCGCGGG 60.050 61.111 6.13 0.59 38.36 6.13
6205 6653 2.050442 GGTGTTTTTGCCTCGCGG 60.050 61.111 6.13 0.00 0.00 6.46
6206 6654 0.660300 GAAGGTGTTTTTGCCTCGCG 60.660 55.000 0.00 0.00 33.24 5.87
6207 6655 0.318699 GGAAGGTGTTTTTGCCTCGC 60.319 55.000 0.00 0.00 33.24 5.03
6208 6656 1.028905 TGGAAGGTGTTTTTGCCTCG 58.971 50.000 0.00 0.00 33.24 4.63
6209 6657 1.754226 TGTGGAAGGTGTTTTTGCCTC 59.246 47.619 0.00 0.00 33.24 4.70
6210 6658 1.859302 TGTGGAAGGTGTTTTTGCCT 58.141 45.000 0.00 0.00 36.51 4.75
6211 6659 2.682155 TTGTGGAAGGTGTTTTTGCC 57.318 45.000 0.00 0.00 0.00 4.52
6212 6660 3.126171 GGTTTTGTGGAAGGTGTTTTTGC 59.874 43.478 0.00 0.00 0.00 3.68
6213 6661 4.319177 TGGTTTTGTGGAAGGTGTTTTTG 58.681 39.130 0.00 0.00 0.00 2.44
6214 6662 4.564613 CCTGGTTTTGTGGAAGGTGTTTTT 60.565 41.667 0.00 0.00 0.00 1.94
6215 6663 3.055458 CCTGGTTTTGTGGAAGGTGTTTT 60.055 43.478 0.00 0.00 0.00 2.43
6216 6664 2.499693 CCTGGTTTTGTGGAAGGTGTTT 59.500 45.455 0.00 0.00 0.00 2.83
6217 6665 2.107366 CCTGGTTTTGTGGAAGGTGTT 58.893 47.619 0.00 0.00 0.00 3.32
6218 6666 1.775385 CCTGGTTTTGTGGAAGGTGT 58.225 50.000 0.00 0.00 0.00 4.16
6219 6667 0.389025 GCCTGGTTTTGTGGAAGGTG 59.611 55.000 0.00 0.00 0.00 4.00
6220 6668 0.759060 GGCCTGGTTTTGTGGAAGGT 60.759 55.000 0.00 0.00 0.00 3.50
6221 6669 0.758685 TGGCCTGGTTTTGTGGAAGG 60.759 55.000 3.32 0.00 0.00 3.46
6222 6670 0.389025 GTGGCCTGGTTTTGTGGAAG 59.611 55.000 3.32 0.00 0.00 3.46
6223 6671 1.045911 GGTGGCCTGGTTTTGTGGAA 61.046 55.000 3.32 0.00 0.00 3.53
6224 6672 1.456705 GGTGGCCTGGTTTTGTGGA 60.457 57.895 3.32 0.00 0.00 4.02
6225 6673 1.457455 AGGTGGCCTGGTTTTGTGG 60.457 57.895 3.32 0.00 29.57 4.17
6226 6674 4.275781 AGGTGGCCTGGTTTTGTG 57.724 55.556 3.32 0.00 29.57 3.33
6235 6683 2.780924 TTGGTTCCCAGGTGGCCT 60.781 61.111 3.32 0.00 33.81 5.19
6236 6684 2.600470 GTTGGTTCCCAGGTGGCC 60.600 66.667 0.00 0.00 33.81 5.36
6237 6685 1.152546 AAGTTGGTTCCCAGGTGGC 60.153 57.895 0.00 0.00 33.81 5.01
6238 6686 0.827507 CCAAGTTGGTTCCCAGGTGG 60.828 60.000 14.21 0.00 33.81 4.61
6239 6687 0.184933 TCCAAGTTGGTTCCCAGGTG 59.815 55.000 21.35 0.00 39.03 4.00
6240 6688 0.185175 GTCCAAGTTGGTTCCCAGGT 59.815 55.000 21.35 0.00 39.03 4.00
6241 6689 0.889186 CGTCCAAGTTGGTTCCCAGG 60.889 60.000 21.35 3.97 39.03 4.45
6242 6690 0.889186 CCGTCCAAGTTGGTTCCCAG 60.889 60.000 21.35 7.68 39.03 4.45
6243 6691 1.149627 CCGTCCAAGTTGGTTCCCA 59.850 57.895 21.35 0.00 39.03 4.37
6244 6692 0.466739 AACCGTCCAAGTTGGTTCCC 60.467 55.000 21.35 7.52 42.11 3.97
6245 6693 2.148768 CTAACCGTCCAAGTTGGTTCC 58.851 52.381 21.35 9.83 44.53 3.62
6246 6694 2.148768 CCTAACCGTCCAAGTTGGTTC 58.851 52.381 21.35 14.20 44.53 3.62
6248 6696 1.134228 ACCTAACCGTCCAAGTTGGT 58.866 50.000 21.35 4.50 39.03 3.67
6249 6697 1.519408 CACCTAACCGTCCAAGTTGG 58.481 55.000 16.36 16.36 39.43 3.77
6250 6698 1.071071 TCCACCTAACCGTCCAAGTTG 59.929 52.381 0.00 0.00 0.00 3.16
6251 6699 1.071228 GTCCACCTAACCGTCCAAGTT 59.929 52.381 0.00 0.00 0.00 2.66
6252 6700 0.683412 GTCCACCTAACCGTCCAAGT 59.317 55.000 0.00 0.00 0.00 3.16
6253 6701 0.682852 TGTCCACCTAACCGTCCAAG 59.317 55.000 0.00 0.00 0.00 3.61
6254 6702 0.393820 GTGTCCACCTAACCGTCCAA 59.606 55.000 0.00 0.00 0.00 3.53
6255 6703 0.470456 AGTGTCCACCTAACCGTCCA 60.470 55.000 0.00 0.00 0.00 4.02
6256 6704 0.245813 GAGTGTCCACCTAACCGTCC 59.754 60.000 0.00 0.00 0.00 4.79
6257 6705 0.109412 CGAGTGTCCACCTAACCGTC 60.109 60.000 0.00 0.00 0.00 4.79
6258 6706 1.962144 CGAGTGTCCACCTAACCGT 59.038 57.895 0.00 0.00 0.00 4.83
6259 6707 1.445582 GCGAGTGTCCACCTAACCG 60.446 63.158 0.00 0.00 0.00 4.44
6260 6708 0.249398 ATGCGAGTGTCCACCTAACC 59.751 55.000 0.00 0.00 0.00 2.85
6261 6709 2.094762 AATGCGAGTGTCCACCTAAC 57.905 50.000 0.00 0.00 0.00 2.34
6262 6710 2.851263 AAATGCGAGTGTCCACCTAA 57.149 45.000 0.00 0.00 0.00 2.69
6263 6711 4.161565 AGAATAAATGCGAGTGTCCACCTA 59.838 41.667 0.00 0.00 0.00 3.08
6264 6712 3.055094 AGAATAAATGCGAGTGTCCACCT 60.055 43.478 0.00 0.00 0.00 4.00
6265 6713 3.270877 AGAATAAATGCGAGTGTCCACC 58.729 45.455 0.00 0.00 0.00 4.61
6266 6714 4.946784 AAGAATAAATGCGAGTGTCCAC 57.053 40.909 0.00 0.00 0.00 4.02
6267 6715 7.465379 CGAATAAAGAATAAATGCGAGTGTCCA 60.465 37.037 0.00 0.00 0.00 4.02
6268 6716 6.846283 CGAATAAAGAATAAATGCGAGTGTCC 59.154 38.462 0.00 0.00 0.00 4.02
6269 6717 7.618442 TCGAATAAAGAATAAATGCGAGTGTC 58.382 34.615 0.00 0.00 0.00 3.67
6270 6718 7.254455 CCTCGAATAAAGAATAAATGCGAGTGT 60.254 37.037 10.20 0.00 40.54 3.55
6271 6719 7.042725 TCCTCGAATAAAGAATAAATGCGAGTG 60.043 37.037 10.20 3.67 40.54 3.51
6272 6720 6.984474 TCCTCGAATAAAGAATAAATGCGAGT 59.016 34.615 10.20 0.00 40.54 4.18
6273 6721 7.408132 TCCTCGAATAAAGAATAAATGCGAG 57.592 36.000 0.00 0.00 41.46 5.03
6274 6722 7.962964 ATCCTCGAATAAAGAATAAATGCGA 57.037 32.000 0.00 0.00 0.00 5.10
6275 6723 9.450807 AAAATCCTCGAATAAAGAATAAATGCG 57.549 29.630 0.00 0.00 0.00 4.73
6279 6727 8.126700 GCCGAAAATCCTCGAATAAAGAATAAA 58.873 33.333 0.00 0.00 41.44 1.40
6280 6728 7.517734 CGCCGAAAATCCTCGAATAAAGAATAA 60.518 37.037 0.00 0.00 41.44 1.40
6281 6729 6.073980 CGCCGAAAATCCTCGAATAAAGAATA 60.074 38.462 0.00 0.00 41.44 1.75
6282 6730 5.277345 CGCCGAAAATCCTCGAATAAAGAAT 60.277 40.000 0.00 0.00 41.44 2.40
6283 6731 4.033587 CGCCGAAAATCCTCGAATAAAGAA 59.966 41.667 0.00 0.00 41.44 2.52
6284 6732 3.554324 CGCCGAAAATCCTCGAATAAAGA 59.446 43.478 0.00 0.00 41.44 2.52
6285 6733 3.554324 TCGCCGAAAATCCTCGAATAAAG 59.446 43.478 0.00 0.00 41.44 1.85
6286 6734 3.523547 TCGCCGAAAATCCTCGAATAAA 58.476 40.909 0.00 0.00 41.44 1.40
6287 6735 3.167921 TCGCCGAAAATCCTCGAATAA 57.832 42.857 0.00 0.00 41.44 1.40
6288 6736 2.875087 TCGCCGAAAATCCTCGAATA 57.125 45.000 0.00 0.00 41.44 1.75
6289 6737 1.867233 CATCGCCGAAAATCCTCGAAT 59.133 47.619 0.00 0.00 41.44 3.34
6290 6738 1.286501 CATCGCCGAAAATCCTCGAA 58.713 50.000 0.00 0.00 41.44 3.71
6291 6739 1.151777 GCATCGCCGAAAATCCTCGA 61.152 55.000 0.00 0.00 41.44 4.04
6292 6740 1.276844 GCATCGCCGAAAATCCTCG 59.723 57.895 0.00 0.00 38.58 4.63
6293 6741 1.276844 CGCATCGCCGAAAATCCTC 59.723 57.895 0.00 0.00 0.00 3.71
6294 6742 1.449601 ACGCATCGCCGAAAATCCT 60.450 52.632 0.00 0.00 0.00 3.24
6295 6743 1.297598 CACGCATCGCCGAAAATCC 60.298 57.895 0.00 0.00 0.00 3.01
6296 6744 0.179200 AACACGCATCGCCGAAAATC 60.179 50.000 0.00 0.00 0.00 2.17
6297 6745 0.179200 GAACACGCATCGCCGAAAAT 60.179 50.000 0.00 0.00 0.00 1.82
6298 6746 1.205568 GAACACGCATCGCCGAAAA 59.794 52.632 0.00 0.00 0.00 2.29
6299 6747 1.896339 CTGAACACGCATCGCCGAAA 61.896 55.000 0.00 0.00 0.00 3.46
6300 6748 2.356433 TGAACACGCATCGCCGAA 60.356 55.556 0.00 0.00 0.00 4.30
6301 6749 2.809174 CTGAACACGCATCGCCGA 60.809 61.111 0.00 0.00 0.00 5.54
6302 6750 3.853330 CCTGAACACGCATCGCCG 61.853 66.667 0.00 0.00 0.00 6.46
6303 6751 3.499737 CCCTGAACACGCATCGCC 61.500 66.667 0.00 0.00 0.00 5.54
6304 6752 2.434185 TCCCTGAACACGCATCGC 60.434 61.111 0.00 0.00 0.00 4.58
6305 6753 0.803768 CTCTCCCTGAACACGCATCG 60.804 60.000 0.00 0.00 0.00 3.84
6306 6754 0.460987 CCTCTCCCTGAACACGCATC 60.461 60.000 0.00 0.00 0.00 3.91
6307 6755 0.904865 TCCTCTCCCTGAACACGCAT 60.905 55.000 0.00 0.00 0.00 4.73
6308 6756 1.533033 TCCTCTCCCTGAACACGCA 60.533 57.895 0.00 0.00 0.00 5.24
6309 6757 1.216710 CTCCTCTCCCTGAACACGC 59.783 63.158 0.00 0.00 0.00 5.34
6310 6758 1.479709 ATCTCCTCTCCCTGAACACG 58.520 55.000 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.