Multiple sequence alignment - TraesCS1D01G422500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G422500 chr1D 100.000 3215 0 0 1 3215 478030470 478033684 0.000000e+00 5938.0
1 TraesCS1D01G422500 chr1D 83.757 1219 134 39 1005 2203 477509441 477508267 0.000000e+00 1096.0
2 TraesCS1D01G422500 chr1D 83.675 1219 137 38 1005 2203 393034605 393033429 0.000000e+00 1092.0
3 TraesCS1D01G422500 chr1D 84.664 789 79 11 1217 1985 477598927 477598161 0.000000e+00 749.0
4 TraesCS1D01G422500 chr1D 94.118 391 21 2 1005 1394 392968328 392967939 7.680000e-166 593.0
5 TraesCS1D01G422500 chr1D 85.397 315 43 3 2901 3215 92964207 92964518 1.110000e-84 324.0
6 TraesCS1D01G422500 chr1D 82.558 258 44 1 2958 3215 34612981 34613237 3.230000e-55 226.0
7 TraesCS1D01G422500 chr1D 73.558 416 89 15 2806 3214 371063891 371064292 4.320000e-29 139.0
8 TraesCS1D01G422500 chr1D 96.364 55 2 0 2700 2754 393111926 393111980 1.230000e-14 91.6
9 TraesCS1D01G422500 chr1A 94.989 1417 54 9 841 2254 574301591 574302993 0.000000e+00 2207.0
10 TraesCS1D01G422500 chr1A 85.017 1208 126 30 1005 2203 573949255 573948094 0.000000e+00 1177.0
11 TraesCS1D01G422500 chr1A 86.637 913 71 9 862 1744 574215096 574214205 0.000000e+00 963.0
12 TraesCS1D01G422500 chr1A 95.218 481 19 3 955 1431 31245200 31244720 0.000000e+00 758.0
13 TraesCS1D01G422500 chr1A 81.672 311 36 12 1743 2045 574214044 574213747 4.150000e-59 239.0
14 TraesCS1D01G422500 chr1A 87.273 110 9 2 2591 2695 574303075 574303184 1.570000e-23 121.0
15 TraesCS1D01G422500 chr1A 90.323 62 4 2 2700 2759 574206521 574206460 2.660000e-11 80.5
16 TraesCS1D01G422500 chr1B 92.427 1413 72 13 832 2226 665270810 665272205 0.000000e+00 1984.0
17 TraesCS1D01G422500 chr1B 85.292 1387 150 33 863 2226 665114096 665112741 0.000000e+00 1382.0
18 TraesCS1D01G422500 chr1B 82.103 447 58 12 2591 3031 665272317 665272747 2.360000e-96 363.0
19 TraesCS1D01G422500 chr3A 78.246 593 103 21 124 700 553323387 553322805 1.100000e-94 357.0
20 TraesCS1D01G422500 chr2A 92.188 256 14 2 2339 2589 671337226 671336972 1.100000e-94 357.0
21 TraesCS1D01G422500 chr2A 90.438 251 18 2 2344 2589 765550368 765550119 3.090000e-85 326.0
22 TraesCS1D01G422500 chr2A 90.438 251 17 3 2344 2589 430205203 430205451 1.110000e-84 324.0
23 TraesCS1D01G422500 chr2A 88.976 254 22 2 2341 2589 122041080 122041332 3.110000e-80 309.0
24 TraesCS1D01G422500 chr2A 76.409 479 80 22 84 556 773780264 773779813 8.970000e-56 228.0
25 TraesCS1D01G422500 chr2A 81.961 255 45 1 2961 3215 726996134 726995881 6.990000e-52 215.0
26 TraesCS1D01G422500 chr2B 77.742 620 99 23 84 698 787231732 787232317 8.540000e-91 344.0
27 TraesCS1D01G422500 chr2B 79.434 389 52 15 222 606 787094638 787095002 1.910000e-62 250.0
28 TraesCS1D01G422500 chr5B 86.392 316 40 3 2901 3215 681348714 681349027 3.070000e-90 342.0
29 TraesCS1D01G422500 chr5B 83.784 148 21 3 2 148 331887314 331887169 1.560000e-28 137.0
30 TraesCS1D01G422500 chr2D 90.837 251 17 2 2344 2589 530480569 530480818 6.650000e-87 331.0
31 TraesCS1D01G422500 chr6A 90.438 251 18 2 2344 2589 91628867 91628618 3.090000e-85 326.0
32 TraesCS1D01G422500 chr6A 74.307 397 73 27 1 380 116798299 116797915 1.200000e-29 141.0
33 TraesCS1D01G422500 chr7D 85.079 315 38 7 2901 3215 26554952 26555257 2.410000e-81 313.0
34 TraesCS1D01G422500 chr5A 89.157 249 21 2 2347 2589 556718688 556718440 4.030000e-79 305.0
35 TraesCS1D01G422500 chr4A 83.492 315 44 5 2901 3215 710673169 710673475 1.460000e-73 287.0
36 TraesCS1D01G422500 chr4A 85.944 249 29 3 2346 2589 742356871 742356624 8.850000e-66 261.0
37 TraesCS1D01G422500 chr6B 79.952 414 47 25 127 522 426817468 426817073 4.090000e-69 272.0
38 TraesCS1D01G422500 chr3D 85.657 251 30 2 2344 2589 151445156 151444907 3.180000e-65 259.0
39 TraesCS1D01G422500 chr7B 83.267 251 38 3 2967 3215 709626073 709625825 8.970000e-56 228.0
40 TraesCS1D01G422500 chr7A 82.731 249 40 2 2967 3213 709421476 709421229 5.400000e-53 219.0
41 TraesCS1D01G422500 chr7A 78.832 137 21 7 243 378 563392072 563392201 5.710000e-13 86.1
42 TraesCS1D01G422500 chr6D 79.355 310 61 3 2806 3114 455083139 455083446 6.990000e-52 215.0
43 TraesCS1D01G422500 chr6D 74.359 429 76 22 2803 3215 11722236 11722646 5.560000e-33 152.0
44 TraesCS1D01G422500 chr4D 76.836 354 65 11 2756 3106 8666298 8665959 1.970000e-42 183.0
45 TraesCS1D01G422500 chr5D 80.729 192 25 11 2807 2994 214711718 214711535 4.320000e-29 139.0
46 TraesCS1D01G422500 chr4B 84.762 105 15 1 3112 3215 16078946 16078842 1.580000e-18 104.0
47 TraesCS1D01G422500 chr4B 91.667 48 4 0 2866 2913 495836125 495836172 2.070000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G422500 chr1D 478030470 478033684 3214 False 5938.0 5938 100.0000 1 3215 1 chr1D.!!$F5 3214
1 TraesCS1D01G422500 chr1D 477508267 477509441 1174 True 1096.0 1096 83.7570 1005 2203 1 chr1D.!!$R3 1198
2 TraesCS1D01G422500 chr1D 393033429 393034605 1176 True 1092.0 1092 83.6750 1005 2203 1 chr1D.!!$R2 1198
3 TraesCS1D01G422500 chr1D 477598161 477598927 766 True 749.0 749 84.6640 1217 1985 1 chr1D.!!$R4 768
4 TraesCS1D01G422500 chr1A 573948094 573949255 1161 True 1177.0 1177 85.0170 1005 2203 1 chr1A.!!$R2 1198
5 TraesCS1D01G422500 chr1A 574301591 574303184 1593 False 1164.0 2207 91.1310 841 2695 2 chr1A.!!$F1 1854
6 TraesCS1D01G422500 chr1A 574213747 574215096 1349 True 601.0 963 84.1545 862 2045 2 chr1A.!!$R4 1183
7 TraesCS1D01G422500 chr1B 665112741 665114096 1355 True 1382.0 1382 85.2920 863 2226 1 chr1B.!!$R1 1363
8 TraesCS1D01G422500 chr1B 665270810 665272747 1937 False 1173.5 1984 87.2650 832 3031 2 chr1B.!!$F1 2199
9 TraesCS1D01G422500 chr3A 553322805 553323387 582 True 357.0 357 78.2460 124 700 1 chr3A.!!$R1 576
10 TraesCS1D01G422500 chr2B 787231732 787232317 585 False 344.0 344 77.7420 84 698 1 chr2B.!!$F2 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
709 818 0.029567 CCACGAGCGCTAACTAGGAG 59.97 60.0 11.5 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2331 2741 0.320508 GGAGGGAGGACAACGTTGAC 60.321 60.0 33.66 26.67 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.269477 CTTCTTCCTGGGTCAATGAATTATC 57.731 40.000 0.00 0.00 0.00 1.75
25 26 6.581388 TCTTCCTGGGTCAATGAATTATCT 57.419 37.500 0.00 0.00 0.00 1.98
26 27 6.973642 TCTTCCTGGGTCAATGAATTATCTT 58.026 36.000 0.00 0.00 0.00 2.40
27 28 6.830324 TCTTCCTGGGTCAATGAATTATCTTG 59.170 38.462 0.00 0.00 0.00 3.02
28 29 4.889409 TCCTGGGTCAATGAATTATCTTGC 59.111 41.667 0.00 0.00 0.00 4.01
29 30 4.646040 CCTGGGTCAATGAATTATCTTGCA 59.354 41.667 0.00 0.00 0.00 4.08
30 31 5.127519 CCTGGGTCAATGAATTATCTTGCAA 59.872 40.000 0.00 0.00 0.00 4.08
31 32 6.351202 CCTGGGTCAATGAATTATCTTGCAAA 60.351 38.462 0.00 0.00 0.00 3.68
32 33 7.185318 TGGGTCAATGAATTATCTTGCAAAT 57.815 32.000 0.00 0.00 0.00 2.32
33 34 8.303780 TGGGTCAATGAATTATCTTGCAAATA 57.696 30.769 0.00 0.00 0.00 1.40
34 35 8.196771 TGGGTCAATGAATTATCTTGCAAATAC 58.803 33.333 0.00 0.00 0.00 1.89
35 36 7.379529 GGGTCAATGAATTATCTTGCAAATACG 59.620 37.037 0.00 0.00 0.00 3.06
36 37 7.915397 GGTCAATGAATTATCTTGCAAATACGT 59.085 33.333 0.00 0.00 0.00 3.57
37 38 8.736742 GTCAATGAATTATCTTGCAAATACGTG 58.263 33.333 0.00 0.00 0.00 4.49
38 39 8.672815 TCAATGAATTATCTTGCAAATACGTGA 58.327 29.630 0.00 0.00 0.00 4.35
39 40 9.288124 CAATGAATTATCTTGCAAATACGTGAA 57.712 29.630 0.00 0.00 0.00 3.18
40 41 8.841444 ATGAATTATCTTGCAAATACGTGAAC 57.159 30.769 0.00 0.00 0.00 3.18
41 42 8.039603 TGAATTATCTTGCAAATACGTGAACT 57.960 30.769 0.00 0.00 0.00 3.01
42 43 9.157104 TGAATTATCTTGCAAATACGTGAACTA 57.843 29.630 0.00 0.00 0.00 2.24
46 47 9.982291 TTATCTTGCAAATACGTGAACTATTTC 57.018 29.630 0.00 0.00 0.00 2.17
47 48 7.667043 TCTTGCAAATACGTGAACTATTTCT 57.333 32.000 0.00 0.00 32.36 2.52
48 49 8.094798 TCTTGCAAATACGTGAACTATTTCTT 57.905 30.769 0.00 0.00 32.36 2.52
49 50 8.227791 TCTTGCAAATACGTGAACTATTTCTTC 58.772 33.333 0.00 0.00 32.36 2.87
50 51 7.428282 TGCAAATACGTGAACTATTTCTTCA 57.572 32.000 0.00 0.00 32.36 3.02
51 52 7.866729 TGCAAATACGTGAACTATTTCTTCAA 58.133 30.769 0.00 0.00 32.36 2.69
52 53 8.346300 TGCAAATACGTGAACTATTTCTTCAAA 58.654 29.630 0.00 0.00 32.36 2.69
53 54 9.341899 GCAAATACGTGAACTATTTCTTCAAAT 57.658 29.630 0.00 0.00 36.18 2.32
55 56 9.755064 AAATACGTGAACTATTTCTTCAAATCG 57.245 29.630 0.00 0.00 33.95 3.34
56 57 8.697846 ATACGTGAACTATTTCTTCAAATCGA 57.302 30.769 0.00 0.00 33.95 3.59
57 58 7.596749 ACGTGAACTATTTCTTCAAATCGAT 57.403 32.000 0.00 0.00 33.95 3.59
58 59 7.456253 ACGTGAACTATTTCTTCAAATCGATG 58.544 34.615 0.00 0.00 33.95 3.84
59 60 7.330946 ACGTGAACTATTTCTTCAAATCGATGA 59.669 33.333 0.00 0.00 33.95 2.92
60 61 8.168626 CGTGAACTATTTCTTCAAATCGATGAA 58.831 33.333 0.00 0.00 36.33 2.57
61 62 9.267096 GTGAACTATTTCTTCAAATCGATGAAC 57.733 33.333 0.00 0.00 37.48 3.18
62 63 9.219603 TGAACTATTTCTTCAAATCGATGAACT 57.780 29.630 0.00 0.00 37.48 3.01
326 410 8.356657 TGAACATTTTATGAAATCCGTGAACTT 58.643 29.630 0.00 0.00 33.25 2.66
449 554 9.643693 ATCGTTCTCAAATTTATGCTTTCATTT 57.356 25.926 0.00 0.00 34.22 2.32
600 707 1.269257 TGTGTGCTGAGTTCGAGTCAG 60.269 52.381 18.16 18.16 46.01 3.51
606 713 2.545952 GCTGAGTTCGAGTCAGGTTTCA 60.546 50.000 21.83 4.53 44.00 2.69
607 714 3.053455 CTGAGTTCGAGTCAGGTTTCAC 58.947 50.000 15.75 0.00 40.98 3.18
608 715 2.223971 TGAGTTCGAGTCAGGTTTCACC 60.224 50.000 0.00 0.00 38.99 4.02
660 769 4.088923 CGTTGCGTTTACAACTCGAATAGA 59.911 41.667 5.92 0.00 46.21 1.98
693 802 4.025401 CCCGTTGCAAGTCGCCAC 62.025 66.667 0.00 0.00 41.33 5.01
706 815 3.999051 GCCACGAGCGCTAACTAG 58.001 61.111 11.50 1.96 0.00 2.57
707 816 1.589196 GCCACGAGCGCTAACTAGG 60.589 63.158 11.50 9.79 0.00 3.02
708 817 2.001361 GCCACGAGCGCTAACTAGGA 62.001 60.000 11.50 0.00 0.00 2.94
709 818 0.029567 CCACGAGCGCTAACTAGGAG 59.970 60.000 11.50 0.00 0.00 3.69
710 819 0.592754 CACGAGCGCTAACTAGGAGC 60.593 60.000 11.50 8.48 36.54 4.70
711 820 0.748729 ACGAGCGCTAACTAGGAGCT 60.749 55.000 11.50 6.41 42.08 4.09
712 821 3.857638 GAGCGCTAACTAGGAGCTC 57.142 57.895 11.50 4.71 45.71 4.09
713 822 0.312729 GAGCGCTAACTAGGAGCTCC 59.687 60.000 26.22 26.22 45.94 4.70
714 823 1.110518 AGCGCTAACTAGGAGCTCCC 61.111 60.000 29.54 10.94 35.03 4.30
715 824 1.655329 CGCTAACTAGGAGCTCCCG 59.345 63.158 29.54 22.05 40.87 5.14
716 825 1.364536 GCTAACTAGGAGCTCCCGC 59.635 63.158 29.54 17.25 40.87 6.13
725 834 4.075793 AGCTCCCGCTACCCCTCA 62.076 66.667 0.00 0.00 46.79 3.86
726 835 3.081409 GCTCCCGCTACCCCTCAA 61.081 66.667 0.00 0.00 0.00 3.02
727 836 2.666098 GCTCCCGCTACCCCTCAAA 61.666 63.158 0.00 0.00 0.00 2.69
728 837 1.988015 CTCCCGCTACCCCTCAAAA 59.012 57.895 0.00 0.00 0.00 2.44
729 838 0.326927 CTCCCGCTACCCCTCAAAAA 59.673 55.000 0.00 0.00 0.00 1.94
750 859 3.553109 AAAAACTAGGAGCTCCCGC 57.447 52.632 29.54 4.56 40.87 6.13
751 860 0.035343 AAAAACTAGGAGCTCCCGCC 60.035 55.000 29.54 4.88 40.87 6.13
752 861 0.910088 AAAACTAGGAGCTCCCGCCT 60.910 55.000 29.54 13.43 44.10 5.52
753 862 1.331399 AAACTAGGAGCTCCCGCCTC 61.331 60.000 29.54 2.90 40.72 4.70
754 863 2.123683 CTAGGAGCTCCCGCCTCA 60.124 66.667 29.54 6.85 40.72 3.86
755 864 1.758514 CTAGGAGCTCCCGCCTCAA 60.759 63.158 29.54 5.43 40.72 3.02
756 865 1.305802 TAGGAGCTCCCGCCTCAAA 60.306 57.895 29.54 1.99 40.72 2.69
757 866 0.907704 TAGGAGCTCCCGCCTCAAAA 60.908 55.000 29.54 0.90 40.72 2.44
758 867 1.303317 GGAGCTCCCGCCTCAAAAA 60.303 57.895 23.19 0.00 36.60 1.94
781 890 3.553109 AAAAACTAGGAGCTCCCGC 57.447 52.632 29.54 4.56 40.87 6.13
782 891 0.035343 AAAAACTAGGAGCTCCCGCC 60.035 55.000 29.54 4.88 40.87 6.13
783 892 0.910088 AAAACTAGGAGCTCCCGCCT 60.910 55.000 29.54 13.43 44.10 5.52
784 893 0.910088 AAACTAGGAGCTCCCGCCTT 60.910 55.000 29.54 14.82 41.80 4.35
785 894 1.331399 AACTAGGAGCTCCCGCCTTC 61.331 60.000 29.54 2.09 41.80 3.46
786 895 2.833582 TAGGAGCTCCCGCCTTCG 60.834 66.667 29.54 0.00 41.80 3.79
787 896 3.657038 TAGGAGCTCCCGCCTTCGT 62.657 63.158 29.54 10.66 41.80 3.85
788 897 4.083862 GGAGCTCCCGCCTTCGTT 62.084 66.667 23.19 0.00 36.60 3.85
789 898 2.509561 GAGCTCCCGCCTTCGTTC 60.510 66.667 0.87 0.00 36.60 3.95
790 899 2.997897 AGCTCCCGCCTTCGTTCT 60.998 61.111 0.00 0.00 36.60 3.01
791 900 2.047179 GCTCCCGCCTTCGTTCTT 60.047 61.111 0.00 0.00 0.00 2.52
792 901 2.101233 GCTCCCGCCTTCGTTCTTC 61.101 63.158 0.00 0.00 0.00 2.87
793 902 1.448013 CTCCCGCCTTCGTTCTTCC 60.448 63.158 0.00 0.00 0.00 3.46
794 903 2.436115 CCCGCCTTCGTTCTTCCC 60.436 66.667 0.00 0.00 0.00 3.97
795 904 2.345991 CCGCCTTCGTTCTTCCCA 59.654 61.111 0.00 0.00 0.00 4.37
796 905 1.302192 CCGCCTTCGTTCTTCCCAA 60.302 57.895 0.00 0.00 0.00 4.12
797 906 0.887387 CCGCCTTCGTTCTTCCCAAA 60.887 55.000 0.00 0.00 0.00 3.28
798 907 0.948678 CGCCTTCGTTCTTCCCAAAA 59.051 50.000 0.00 0.00 0.00 2.44
799 908 1.334689 CGCCTTCGTTCTTCCCAAAAC 60.335 52.381 0.00 0.00 0.00 2.43
800 909 1.954382 GCCTTCGTTCTTCCCAAAACT 59.046 47.619 0.00 0.00 0.00 2.66
801 910 2.287608 GCCTTCGTTCTTCCCAAAACTG 60.288 50.000 0.00 0.00 0.00 3.16
802 911 2.293399 CCTTCGTTCTTCCCAAAACTGG 59.707 50.000 0.00 0.00 0.00 4.00
803 912 1.314730 TCGTTCTTCCCAAAACTGGC 58.685 50.000 0.00 0.00 0.00 4.85
804 913 0.040425 CGTTCTTCCCAAAACTGGCG 60.040 55.000 0.00 0.00 0.00 5.69
805 914 0.318699 GTTCTTCCCAAAACTGGCGC 60.319 55.000 0.00 0.00 0.00 6.53
806 915 0.753479 TTCTTCCCAAAACTGGCGCA 60.753 50.000 10.83 0.00 0.00 6.09
807 916 1.007387 CTTCCCAAAACTGGCGCAC 60.007 57.895 10.83 0.00 0.00 5.34
808 917 1.733402 CTTCCCAAAACTGGCGCACA 61.733 55.000 10.83 3.75 0.00 4.57
809 918 1.323271 TTCCCAAAACTGGCGCACAA 61.323 50.000 10.83 0.00 0.00 3.33
810 919 1.112315 TCCCAAAACTGGCGCACAAT 61.112 50.000 10.83 0.00 0.00 2.71
811 920 0.945265 CCCAAAACTGGCGCACAATG 60.945 55.000 10.83 0.00 0.00 2.82
812 921 0.031857 CCAAAACTGGCGCACAATGA 59.968 50.000 10.83 0.00 0.00 2.57
813 922 1.537776 CCAAAACTGGCGCACAATGAA 60.538 47.619 10.83 0.00 0.00 2.57
814 923 2.200067 CAAAACTGGCGCACAATGAAA 58.800 42.857 10.83 0.00 0.00 2.69
815 924 1.851658 AAACTGGCGCACAATGAAAC 58.148 45.000 10.83 0.00 0.00 2.78
816 925 0.317770 AACTGGCGCACAATGAAACG 60.318 50.000 10.83 0.00 0.00 3.60
820 929 3.440267 CGCACAATGAAACGCTGC 58.560 55.556 0.00 0.00 0.00 5.25
821 930 1.370293 CGCACAATGAAACGCTGCA 60.370 52.632 0.00 0.00 0.00 4.41
822 931 1.599422 CGCACAATGAAACGCTGCAC 61.599 55.000 0.00 0.00 0.00 4.57
847 956 1.676006 CGGCAAACTTCTCAACTGGTT 59.324 47.619 0.00 0.00 0.00 3.67
906 1015 0.035036 AGTCTCGGACTCTCGTGTCA 59.965 55.000 1.23 0.00 38.71 3.58
942 1054 1.816863 ATATACGGCTCCCACGGCAG 61.817 60.000 0.00 0.00 35.23 4.85
2019 2393 0.335361 ACTGTCTCTACACCGGGGAT 59.665 55.000 12.96 0.00 0.00 3.85
2076 2456 6.807230 GGACATACAATCATCGATACTACCAC 59.193 42.308 0.00 0.00 0.00 4.16
2204 2584 2.422093 GGCTATTCCCTCCAACTCCAAG 60.422 54.545 0.00 0.00 0.00 3.61
2217 2597 3.689872 ACTCCAAGTCAGGGATAGCTA 57.310 47.619 0.00 0.00 33.04 3.32
2222 2602 2.952978 CAAGTCAGGGATAGCTACGACT 59.047 50.000 0.00 0.79 35.31 4.18
2223 2603 2.577700 AGTCAGGGATAGCTACGACTG 58.422 52.381 12.00 12.00 32.70 3.51
2224 2604 2.172930 AGTCAGGGATAGCTACGACTGA 59.827 50.000 15.30 15.30 32.70 3.41
2225 2605 2.950309 GTCAGGGATAGCTACGACTGAA 59.050 50.000 18.96 6.57 36.80 3.02
2226 2606 3.003897 GTCAGGGATAGCTACGACTGAAG 59.996 52.174 18.96 0.00 36.80 3.02
2234 2614 1.661112 GCTACGACTGAAGTGAATGGC 59.339 52.381 0.00 0.00 0.00 4.40
2237 2617 1.081892 CGACTGAAGTGAATGGCCAG 58.918 55.000 13.05 0.00 0.00 4.85
2244 2624 4.517285 TGAAGTGAATGGCCAGTTCTATC 58.483 43.478 13.05 13.74 43.43 2.08
2260 2666 5.704515 AGTTCTATCTATGCATGATGTTGGC 59.295 40.000 10.16 3.02 0.00 4.52
2288 2698 2.092484 TGCATGCTGGCCTCAAATACTA 60.092 45.455 20.33 0.00 0.00 1.82
2289 2699 2.291741 GCATGCTGGCCTCAAATACTAC 59.708 50.000 11.37 0.00 0.00 2.73
2293 2703 3.772572 TGCTGGCCTCAAATACTACTGTA 59.227 43.478 3.32 0.00 0.00 2.74
2294 2704 4.120589 GCTGGCCTCAAATACTACTGTAC 58.879 47.826 3.32 0.00 0.00 2.90
2295 2705 4.141914 GCTGGCCTCAAATACTACTGTACT 60.142 45.833 3.32 0.00 0.00 2.73
2296 2706 5.627040 GCTGGCCTCAAATACTACTGTACTT 60.627 44.000 3.32 0.00 0.00 2.24
2297 2707 5.730550 TGGCCTCAAATACTACTGTACTTG 58.269 41.667 3.32 0.00 37.26 3.16
2298 2708 5.116882 GGCCTCAAATACTACTGTACTTGG 58.883 45.833 0.00 0.00 36.76 3.61
2299 2709 5.338137 GGCCTCAAATACTACTGTACTTGGT 60.338 44.000 0.00 0.00 36.76 3.67
2300 2710 5.811100 GCCTCAAATACTACTGTACTTGGTC 59.189 44.000 0.00 0.00 36.76 4.02
2316 2726 3.159213 TGGTCTGATGATTGCAAACCT 57.841 42.857 1.71 0.00 0.00 3.50
2317 2727 4.299586 TGGTCTGATGATTGCAAACCTA 57.700 40.909 1.71 0.00 0.00 3.08
2323 2733 6.094603 GTCTGATGATTGCAAACCTAAGATGT 59.905 38.462 1.71 0.00 0.00 3.06
2331 2741 4.638421 TGCAAACCTAAGATGTATTTCCCG 59.362 41.667 0.00 0.00 0.00 5.14
2332 2742 4.638865 GCAAACCTAAGATGTATTTCCCGT 59.361 41.667 0.00 0.00 0.00 5.28
2335 2745 5.687166 ACCTAAGATGTATTTCCCGTCAA 57.313 39.130 0.00 0.00 0.00 3.18
2336 2746 5.425630 ACCTAAGATGTATTTCCCGTCAAC 58.574 41.667 0.00 0.00 0.00 3.18
2342 2752 2.801679 TGTATTTCCCGTCAACGTTGTC 59.198 45.455 26.47 20.33 37.74 3.18
2343 2753 1.232119 ATTTCCCGTCAACGTTGTCC 58.768 50.000 26.47 17.21 37.74 4.02
2344 2754 0.178533 TTTCCCGTCAACGTTGTCCT 59.821 50.000 26.47 0.00 37.74 3.85
2345 2755 0.249573 TTCCCGTCAACGTTGTCCTC 60.250 55.000 26.47 14.56 37.74 3.71
2346 2756 1.666872 CCCGTCAACGTTGTCCTCC 60.667 63.158 26.47 10.47 37.74 4.30
2347 2757 1.666872 CCGTCAACGTTGTCCTCCC 60.667 63.158 26.47 8.91 37.74 4.30
2348 2758 1.366366 CGTCAACGTTGTCCTCCCT 59.634 57.895 26.47 0.00 34.11 4.20
2349 2759 0.666577 CGTCAACGTTGTCCTCCCTC 60.667 60.000 26.47 8.28 34.11 4.30
2350 2760 0.320508 GTCAACGTTGTCCTCCCTCC 60.321 60.000 26.47 2.84 0.00 4.30
2351 2761 1.374252 CAACGTTGTCCTCCCTCCG 60.374 63.158 20.21 0.00 0.00 4.63
2352 2762 2.580601 AACGTTGTCCTCCCTCCGG 61.581 63.158 0.00 0.00 0.00 5.14
2353 2763 2.995574 CGTTGTCCTCCCTCCGGT 60.996 66.667 0.00 0.00 0.00 5.28
2354 2764 2.979649 GTTGTCCTCCCTCCGGTC 59.020 66.667 0.00 0.00 0.00 4.79
2355 2765 1.911766 GTTGTCCTCCCTCCGGTCA 60.912 63.158 0.00 0.00 0.00 4.02
2356 2766 1.080354 TTGTCCTCCCTCCGGTCAT 59.920 57.895 0.00 0.00 0.00 3.06
2357 2767 0.546747 TTGTCCTCCCTCCGGTCATT 60.547 55.000 0.00 0.00 0.00 2.57
2358 2768 0.546747 TGTCCTCCCTCCGGTCATTT 60.547 55.000 0.00 0.00 0.00 2.32
2359 2769 0.618981 GTCCTCCCTCCGGTCATTTT 59.381 55.000 0.00 0.00 0.00 1.82
2360 2770 1.004394 GTCCTCCCTCCGGTCATTTTT 59.996 52.381 0.00 0.00 0.00 1.94
2361 2771 2.237893 GTCCTCCCTCCGGTCATTTTTA 59.762 50.000 0.00 0.00 0.00 1.52
2362 2772 2.237893 TCCTCCCTCCGGTCATTTTTAC 59.762 50.000 0.00 0.00 0.00 2.01
2363 2773 2.238898 CCTCCCTCCGGTCATTTTTACT 59.761 50.000 0.00 0.00 0.00 2.24
2364 2774 3.532542 CTCCCTCCGGTCATTTTTACTC 58.467 50.000 0.00 0.00 0.00 2.59
2365 2775 2.237893 TCCCTCCGGTCATTTTTACTCC 59.762 50.000 0.00 0.00 0.00 3.85
2366 2776 2.277084 CCTCCGGTCATTTTTACTCCG 58.723 52.381 0.00 0.00 40.72 4.63
2367 2777 1.664151 CTCCGGTCATTTTTACTCCGC 59.336 52.381 0.00 0.00 39.87 5.54
2368 2778 0.372334 CCGGTCATTTTTACTCCGCG 59.628 55.000 0.00 0.00 39.87 6.46
2369 2779 1.073177 CGGTCATTTTTACTCCGCGT 58.927 50.000 4.92 0.00 35.01 6.01
2370 2780 2.261345 CGGTCATTTTTACTCCGCGTA 58.739 47.619 4.92 0.00 35.01 4.42
2371 2781 2.861935 CGGTCATTTTTACTCCGCGTAT 59.138 45.455 4.92 0.00 35.01 3.06
2372 2782 3.307782 CGGTCATTTTTACTCCGCGTATT 59.692 43.478 4.92 0.00 35.01 1.89
2373 2783 4.503734 CGGTCATTTTTACTCCGCGTATTA 59.496 41.667 4.92 0.00 35.01 0.98
2374 2784 5.332055 CGGTCATTTTTACTCCGCGTATTAG 60.332 44.000 4.92 0.00 35.01 1.73
2375 2785 5.750067 GGTCATTTTTACTCCGCGTATTAGA 59.250 40.000 4.92 0.00 0.00 2.10
2376 2786 6.423001 GGTCATTTTTACTCCGCGTATTAGAT 59.577 38.462 4.92 0.00 0.00 1.98
2377 2787 7.042254 GGTCATTTTTACTCCGCGTATTAGATT 60.042 37.037 4.92 0.00 0.00 2.40
2378 2788 8.333186 GTCATTTTTACTCCGCGTATTAGATTT 58.667 33.333 4.92 0.00 0.00 2.17
2379 2789 8.885722 TCATTTTTACTCCGCGTATTAGATTTT 58.114 29.630 4.92 0.00 0.00 1.82
2380 2790 9.498307 CATTTTTACTCCGCGTATTAGATTTTT 57.502 29.630 4.92 0.00 0.00 1.94
2381 2791 8.883789 TTTTTACTCCGCGTATTAGATTTTTG 57.116 30.769 4.92 0.00 0.00 2.44
2382 2792 7.599630 TTTACTCCGCGTATTAGATTTTTGT 57.400 32.000 4.92 0.00 0.00 2.83
2383 2793 5.713822 ACTCCGCGTATTAGATTTTTGTC 57.286 39.130 4.92 0.00 0.00 3.18
2384 2794 5.172934 ACTCCGCGTATTAGATTTTTGTCA 58.827 37.500 4.92 0.00 0.00 3.58
2385 2795 5.640357 ACTCCGCGTATTAGATTTTTGTCAA 59.360 36.000 4.92 0.00 0.00 3.18
2386 2796 6.102006 TCCGCGTATTAGATTTTTGTCAAG 57.898 37.500 4.92 0.00 0.00 3.02
2387 2797 5.640357 TCCGCGTATTAGATTTTTGTCAAGT 59.360 36.000 4.92 0.00 0.00 3.16
2388 2798 5.957796 CCGCGTATTAGATTTTTGTCAAGTC 59.042 40.000 4.92 0.00 0.00 3.01
2389 2799 6.401688 CCGCGTATTAGATTTTTGTCAAGTCA 60.402 38.462 4.92 0.00 0.00 3.41
2390 2800 7.012943 CGCGTATTAGATTTTTGTCAAGTCAA 58.987 34.615 0.00 0.00 0.00 3.18
2391 2801 7.532546 CGCGTATTAGATTTTTGTCAAGTCAAA 59.467 33.333 0.00 0.00 35.83 2.69
2392 2802 9.176181 GCGTATTAGATTTTTGTCAAGTCAAAA 57.824 29.630 1.99 1.99 42.85 2.44
2398 2808 8.424274 AGATTTTTGTCAAGTCAAAATCAACC 57.576 30.769 16.97 0.00 43.60 3.77
2399 2809 8.040132 AGATTTTTGTCAAGTCAAAATCAACCA 58.960 29.630 16.97 0.00 43.60 3.67
2400 2810 7.969536 TTTTTGTCAAGTCAAAATCAACCAA 57.030 28.000 6.16 0.00 43.60 3.67
2401 2811 7.593875 TTTTGTCAAGTCAAAATCAACCAAG 57.406 32.000 1.99 0.00 40.73 3.61
2402 2812 5.913137 TGTCAAGTCAAAATCAACCAAGT 57.087 34.783 0.00 0.00 0.00 3.16
2403 2813 6.279513 TGTCAAGTCAAAATCAACCAAGTT 57.720 33.333 0.00 0.00 0.00 2.66
2404 2814 6.696411 TGTCAAGTCAAAATCAACCAAGTTT 58.304 32.000 0.00 0.00 0.00 2.66
2405 2815 6.589523 TGTCAAGTCAAAATCAACCAAGTTTG 59.410 34.615 0.00 0.00 35.98 2.93
2406 2816 6.811170 GTCAAGTCAAAATCAACCAAGTTTGA 59.189 34.615 0.00 0.00 39.94 2.69
2409 2819 5.667539 TCAAAATCAACCAAGTTTGACCA 57.332 34.783 0.00 0.00 38.05 4.02
2410 2820 5.659463 TCAAAATCAACCAAGTTTGACCAG 58.341 37.500 0.00 0.00 38.05 4.00
2411 2821 5.420421 TCAAAATCAACCAAGTTTGACCAGA 59.580 36.000 0.00 0.00 38.05 3.86
2412 2822 6.098124 TCAAAATCAACCAAGTTTGACCAGAT 59.902 34.615 0.00 0.00 38.05 2.90
2413 2823 6.484364 AAATCAACCAAGTTTGACCAGATT 57.516 33.333 0.00 0.00 38.31 2.40
2414 2824 6.484364 AATCAACCAAGTTTGACCAGATTT 57.516 33.333 0.00 0.00 38.31 2.17
2415 2825 7.595819 AATCAACCAAGTTTGACCAGATTTA 57.404 32.000 0.00 0.00 38.31 1.40
2416 2826 7.781324 ATCAACCAAGTTTGACCAGATTTAT 57.219 32.000 0.00 0.00 38.31 1.40
2417 2827 8.877864 ATCAACCAAGTTTGACCAGATTTATA 57.122 30.769 0.00 0.00 38.31 0.98
2418 2828 8.877864 TCAACCAAGTTTGACCAGATTTATAT 57.122 30.769 0.00 0.00 30.29 0.86
2419 2829 9.308000 TCAACCAAGTTTGACCAGATTTATATT 57.692 29.630 0.00 0.00 30.29 1.28
2560 2970 6.989659 AGTAAAGATACTTTGACTTCGGACA 58.010 36.000 6.95 0.00 39.36 4.02
2561 2971 7.439381 AGTAAAGATACTTTGACTTCGGACAA 58.561 34.615 6.95 0.00 39.36 3.18
2562 2972 7.929785 AGTAAAGATACTTTGACTTCGGACAAA 59.070 33.333 6.95 0.00 39.36 2.83
2563 2973 7.745620 AAAGATACTTTGACTTCGGACAAAT 57.254 32.000 0.00 0.00 38.45 2.32
2564 2974 6.969828 AGATACTTTGACTTCGGACAAATC 57.030 37.500 0.00 0.00 38.45 2.17
2565 2975 6.702329 AGATACTTTGACTTCGGACAAATCT 58.298 36.000 0.00 0.00 38.45 2.40
2566 2976 7.162082 AGATACTTTGACTTCGGACAAATCTT 58.838 34.615 0.00 0.00 38.45 2.40
2567 2977 8.311836 AGATACTTTGACTTCGGACAAATCTTA 58.688 33.333 0.00 0.00 38.45 2.10
2568 2978 9.099454 GATACTTTGACTTCGGACAAATCTTAT 57.901 33.333 0.00 0.00 38.45 1.73
2571 2981 8.883731 ACTTTGACTTCGGACAAATCTTATATG 58.116 33.333 0.00 0.00 38.45 1.78
2572 2982 6.844696 TGACTTCGGACAAATCTTATATGC 57.155 37.500 0.00 0.00 0.00 3.14
2573 2983 6.345298 TGACTTCGGACAAATCTTATATGCA 58.655 36.000 0.00 0.00 0.00 3.96
2574 2984 6.821160 TGACTTCGGACAAATCTTATATGCAA 59.179 34.615 0.00 0.00 0.00 4.08
2575 2985 7.335673 TGACTTCGGACAAATCTTATATGCAAA 59.664 33.333 0.00 0.00 0.00 3.68
2576 2986 7.472543 ACTTCGGACAAATCTTATATGCAAAC 58.527 34.615 0.00 0.00 0.00 2.93
2577 2987 7.336931 ACTTCGGACAAATCTTATATGCAAACT 59.663 33.333 0.00 0.00 0.00 2.66
2578 2988 8.725405 TTCGGACAAATCTTATATGCAAACTA 57.275 30.769 0.00 0.00 0.00 2.24
2579 2989 8.725405 TCGGACAAATCTTATATGCAAACTAA 57.275 30.769 0.00 0.00 0.00 2.24
2580 2990 9.168451 TCGGACAAATCTTATATGCAAACTAAA 57.832 29.630 0.00 0.00 0.00 1.85
2581 2991 9.781834 CGGACAAATCTTATATGCAAACTAAAA 57.218 29.630 0.00 0.00 0.00 1.52
2588 2998 7.981142 TCTTATATGCAAACTAAAAAGGACCG 58.019 34.615 0.00 0.00 0.00 4.79
2589 2999 2.785713 TGCAAACTAAAAAGGACCGC 57.214 45.000 0.00 0.00 0.00 5.68
2606 3016 4.387598 GACCGCCTCTACAAGTCTAGATA 58.612 47.826 0.00 0.00 0.00 1.98
2723 3138 4.383118 GCTAACTAACTTCTCCAGATGGCA 60.383 45.833 0.00 0.00 34.44 4.92
2744 3159 0.707024 TATGTTGGGCCCCACAATGA 59.293 50.000 30.87 17.04 30.78 2.57
2754 3169 3.365472 GCCCCACAATGAAAAGGTCTAT 58.635 45.455 0.00 0.00 0.00 1.98
2760 3175 5.067805 CCACAATGAAAAGGTCTATAAGGGC 59.932 44.000 0.00 0.00 0.00 5.19
2765 3180 5.930135 TGAAAAGGTCTATAAGGGCATCTC 58.070 41.667 0.00 0.00 0.00 2.75
2771 3186 4.103311 GGTCTATAAGGGCATCTCCAAACT 59.897 45.833 0.00 0.00 36.21 2.66
2774 3189 2.503895 AAGGGCATCTCCAAACTCTG 57.496 50.000 0.00 0.00 36.21 3.35
2777 3192 1.372087 GGCATCTCCAAACTCTGGCG 61.372 60.000 0.00 0.00 45.98 5.69
2780 3195 2.543067 ATCTCCAAACTCTGGCGCCC 62.543 60.000 26.77 6.44 45.98 6.13
2790 3205 0.887933 TCTGGCGCCCAAATTTTCTC 59.112 50.000 26.77 0.00 30.80 2.87
2791 3206 0.108662 CTGGCGCCCAAATTTTCTCC 60.109 55.000 26.77 0.00 30.80 3.71
2799 3214 1.824230 CCAAATTTTCTCCGGCATCCA 59.176 47.619 0.00 0.00 0.00 3.41
2801 3216 3.118665 CCAAATTTTCTCCGGCATCCATT 60.119 43.478 0.00 0.00 0.00 3.16
2804 3219 0.251916 TTTCTCCGGCATCCATTCGT 59.748 50.000 0.00 0.00 0.00 3.85
2805 3220 0.461870 TTCTCCGGCATCCATTCGTG 60.462 55.000 0.00 0.00 0.00 4.35
2806 3221 1.889105 CTCCGGCATCCATTCGTGG 60.889 63.158 0.00 0.00 0.00 4.94
2807 3222 2.189257 CCGGCATCCATTCGTGGA 59.811 61.111 0.00 0.00 42.91 4.02
2809 3224 1.449423 CGGCATCCATTCGTGGACA 60.449 57.895 0.00 0.00 41.33 4.02
2810 3225 1.705337 CGGCATCCATTCGTGGACAC 61.705 60.000 0.00 0.00 41.33 3.67
2821 3236 3.770040 TGGACACGGATGCGGGAG 61.770 66.667 18.37 5.04 0.00 4.30
2830 3245 1.144057 GATGCGGGAGACGGTCATT 59.856 57.895 11.27 0.00 44.51 2.57
2837 3252 1.359459 GGAGACGGTCATTCAACGCC 61.359 60.000 11.27 0.00 0.00 5.68
2853 3268 3.030652 CCGCCCGCATACAATTCC 58.969 61.111 0.00 0.00 0.00 3.01
2858 3273 0.395036 CCCGCATACAATTCCACCCA 60.395 55.000 0.00 0.00 0.00 4.51
2860 3275 1.024271 CGCATACAATTCCACCCAGG 58.976 55.000 0.00 0.00 39.47 4.45
2864 3279 3.260632 GCATACAATTCCACCCAGGTTTT 59.739 43.478 0.00 0.00 39.02 2.43
2896 3312 2.607180 ACAAAATTCAAGCAAACACGGC 59.393 40.909 0.00 0.00 0.00 5.68
2897 3313 2.593346 AAATTCAAGCAAACACGGCA 57.407 40.000 0.00 0.00 0.00 5.69
2910 3326 6.870965 AGCAAACACGGCAAATTTTCATATAA 59.129 30.769 0.00 0.00 0.00 0.98
2914 3334 6.692486 ACACGGCAAATTTTCATATAAACCA 58.308 32.000 0.00 0.00 0.00 3.67
2916 3336 6.811170 CACGGCAAATTTTCATATAAACCAGT 59.189 34.615 0.00 0.00 0.00 4.00
2972 3392 8.859236 AACCAAACCTTACTCTAAACCTAATC 57.141 34.615 0.00 0.00 0.00 1.75
2987 3407 2.673368 CCTAATCTAAATGATCGCCGGC 59.327 50.000 19.07 19.07 33.57 6.13
2990 3410 2.954753 CTAAATGATCGCCGGCGCC 61.955 63.158 42.78 33.63 39.59 6.53
3004 3424 4.473520 CGCCCGTTCTCCATGCCT 62.474 66.667 0.00 0.00 0.00 4.75
3011 3431 1.076559 TTCTCCATGCCTGGCCATG 60.077 57.895 17.53 18.05 42.80 3.66
3012 3432 1.866483 TTCTCCATGCCTGGCCATGT 61.866 55.000 17.53 0.00 42.80 3.21
3024 3444 2.438434 CCATGTGCCCCGAGAACC 60.438 66.667 0.00 0.00 0.00 3.62
3031 3451 2.184579 CCCCGAGAACCGAAGCTC 59.815 66.667 0.00 0.00 41.76 4.09
3032 3452 2.184579 CCCGAGAACCGAAGCTCC 59.815 66.667 0.00 0.00 41.76 4.70
3033 3453 2.646175 CCCGAGAACCGAAGCTCCA 61.646 63.158 0.00 0.00 41.76 3.86
3034 3454 1.153745 CCGAGAACCGAAGCTCCAG 60.154 63.158 0.00 0.00 41.76 3.86
3035 3455 1.807573 CGAGAACCGAAGCTCCAGC 60.808 63.158 0.00 0.00 41.76 4.85
3045 3465 2.124778 GCTCCAGCTCCTGCCTTC 60.125 66.667 0.00 0.00 40.80 3.46
3046 3466 2.186384 CTCCAGCTCCTGCCTTCG 59.814 66.667 0.00 0.00 40.80 3.79
3047 3467 4.087892 TCCAGCTCCTGCCTTCGC 62.088 66.667 0.00 0.00 40.80 4.70
3048 3468 4.093291 CCAGCTCCTGCCTTCGCT 62.093 66.667 0.00 0.00 40.80 4.93
3049 3469 2.046507 CAGCTCCTGCCTTCGCTT 60.047 61.111 0.00 0.00 40.80 4.68
3050 3470 1.673665 CAGCTCCTGCCTTCGCTTT 60.674 57.895 0.00 0.00 40.80 3.51
3051 3471 1.376553 AGCTCCTGCCTTCGCTTTC 60.377 57.895 0.00 0.00 40.80 2.62
3052 3472 1.376553 GCTCCTGCCTTCGCTTTCT 60.377 57.895 0.00 0.00 35.36 2.52
3053 3473 1.365368 GCTCCTGCCTTCGCTTTCTC 61.365 60.000 0.00 0.00 35.36 2.87
3054 3474 0.742635 CTCCTGCCTTCGCTTTCTCC 60.743 60.000 0.00 0.00 35.36 3.71
3055 3475 1.003355 CCTGCCTTCGCTTTCTCCA 60.003 57.895 0.00 0.00 35.36 3.86
3056 3476 0.606401 CCTGCCTTCGCTTTCTCCAA 60.606 55.000 0.00 0.00 35.36 3.53
3057 3477 0.519077 CTGCCTTCGCTTTCTCCAAC 59.481 55.000 0.00 0.00 35.36 3.77
3058 3478 0.108585 TGCCTTCGCTTTCTCCAACT 59.891 50.000 0.00 0.00 35.36 3.16
3059 3479 0.799393 GCCTTCGCTTTCTCCAACTC 59.201 55.000 0.00 0.00 0.00 3.01
3060 3480 1.443802 CCTTCGCTTTCTCCAACTCC 58.556 55.000 0.00 0.00 0.00 3.85
3061 3481 1.071605 CTTCGCTTTCTCCAACTCCG 58.928 55.000 0.00 0.00 0.00 4.63
3062 3482 0.949105 TTCGCTTTCTCCAACTCCGC 60.949 55.000 0.00 0.00 0.00 5.54
3063 3483 2.391389 CGCTTTCTCCAACTCCGCC 61.391 63.158 0.00 0.00 0.00 6.13
3064 3484 1.003233 GCTTTCTCCAACTCCGCCT 60.003 57.895 0.00 0.00 0.00 5.52
3065 3485 1.021920 GCTTTCTCCAACTCCGCCTC 61.022 60.000 0.00 0.00 0.00 4.70
3066 3486 0.737715 CTTTCTCCAACTCCGCCTCG 60.738 60.000 0.00 0.00 0.00 4.63
3085 3505 4.749310 CGCTCTCCAACGCTGCCT 62.749 66.667 0.00 0.00 0.00 4.75
3086 3506 2.817396 GCTCTCCAACGCTGCCTC 60.817 66.667 0.00 0.00 0.00 4.70
3087 3507 2.977178 CTCTCCAACGCTGCCTCT 59.023 61.111 0.00 0.00 0.00 3.69
3088 3508 1.447489 CTCTCCAACGCTGCCTCTG 60.447 63.158 0.00 0.00 0.00 3.35
3089 3509 3.123620 CTCCAACGCTGCCTCTGC 61.124 66.667 0.00 0.00 38.26 4.26
3123 3543 3.324035 GCTTGAGCGGCTAATCGG 58.676 61.111 0.60 0.00 0.00 4.18
3124 3544 2.886782 GCTTGAGCGGCTAATCGGC 61.887 63.158 0.60 0.00 40.86 5.54
3137 3557 4.178861 TCGGCCGTCGATTTTCAG 57.821 55.556 27.15 0.00 43.74 3.02
3138 3558 2.098233 TCGGCCGTCGATTTTCAGC 61.098 57.895 27.15 0.00 43.74 4.26
3139 3559 2.791927 GGCCGTCGATTTTCAGCC 59.208 61.111 0.00 0.00 0.00 4.85
3140 3560 2.761195 GGCCGTCGATTTTCAGCCC 61.761 63.158 0.00 0.00 34.23 5.19
3141 3561 3.089784 CCGTCGATTTTCAGCCCG 58.910 61.111 0.00 0.00 0.00 6.13
3142 3562 2.399611 CGTCGATTTTCAGCCCGC 59.600 61.111 0.00 0.00 0.00 6.13
3143 3563 2.791927 GTCGATTTTCAGCCCGCC 59.208 61.111 0.00 0.00 0.00 6.13
3144 3564 2.038269 GTCGATTTTCAGCCCGCCA 61.038 57.895 0.00 0.00 0.00 5.69
3145 3565 1.302913 TCGATTTTCAGCCCGCCAA 60.303 52.632 0.00 0.00 0.00 4.52
3146 3566 1.137404 CGATTTTCAGCCCGCCAAG 59.863 57.895 0.00 0.00 0.00 3.61
3147 3567 1.153765 GATTTTCAGCCCGCCAAGC 60.154 57.895 0.00 0.00 0.00 4.01
3148 3568 1.598701 GATTTTCAGCCCGCCAAGCT 61.599 55.000 0.00 0.00 42.70 3.74
3149 3569 1.187567 ATTTTCAGCCCGCCAAGCTT 61.188 50.000 0.00 0.00 38.95 3.74
3150 3570 2.086251 TTTTCAGCCCGCCAAGCTTG 62.086 55.000 19.93 19.93 38.95 4.01
3159 3579 2.564975 CCAAGCTTGGCTTCAGCG 59.435 61.111 31.70 6.62 46.77 5.18
3160 3580 2.564975 CAAGCTTGGCTTCAGCGG 59.435 61.111 19.14 0.00 46.77 5.52
3161 3581 2.674380 AAGCTTGGCTTCAGCGGG 60.674 61.111 0.00 0.00 46.77 6.13
3162 3582 3.196207 AAGCTTGGCTTCAGCGGGA 62.196 57.895 0.00 0.00 46.77 5.14
3163 3583 3.130160 GCTTGGCTTCAGCGGGAG 61.130 66.667 0.00 0.00 43.26 4.30
3164 3584 2.437359 CTTGGCTTCAGCGGGAGG 60.437 66.667 0.00 0.00 43.26 4.30
3165 3585 3.984193 CTTGGCTTCAGCGGGAGGG 62.984 68.421 0.00 0.00 43.26 4.30
3168 3588 3.717294 GCTTCAGCGGGAGGGGAA 61.717 66.667 0.00 0.00 0.00 3.97
3169 3589 2.586792 CTTCAGCGGGAGGGGAAG 59.413 66.667 0.00 0.00 0.00 3.46
3170 3590 1.990060 CTTCAGCGGGAGGGGAAGA 60.990 63.158 0.00 0.00 39.20 2.87
3171 3591 1.965754 CTTCAGCGGGAGGGGAAGAG 61.966 65.000 0.00 0.00 39.20 2.85
3172 3592 4.168291 CAGCGGGAGGGGAAGAGC 62.168 72.222 0.00 0.00 0.00 4.09
3176 3596 3.787001 GGGAGGGGAAGAGCGGTG 61.787 72.222 0.00 0.00 0.00 4.94
3177 3597 3.787001 GGAGGGGAAGAGCGGTGG 61.787 72.222 0.00 0.00 0.00 4.61
3178 3598 3.003763 GAGGGGAAGAGCGGTGGT 61.004 66.667 0.00 0.00 0.00 4.16
3179 3599 3.003763 AGGGGAAGAGCGGTGGTC 61.004 66.667 0.00 0.00 0.00 4.02
3180 3600 3.003763 GGGGAAGAGCGGTGGTCT 61.004 66.667 0.00 0.00 42.52 3.85
3187 3607 1.187087 AGAGCGGTGGTCTTCTTAGG 58.813 55.000 0.00 0.00 37.04 2.69
3188 3608 1.183549 GAGCGGTGGTCTTCTTAGGA 58.816 55.000 0.00 0.00 0.00 2.94
3189 3609 0.896226 AGCGGTGGTCTTCTTAGGAC 59.104 55.000 0.00 0.00 0.00 3.85
3195 3615 0.460722 GGTCTTCTTAGGACCCGAGC 59.539 60.000 1.80 0.00 45.31 5.03
3196 3616 0.100861 GTCTTCTTAGGACCCGAGCG 59.899 60.000 0.00 0.00 0.00 5.03
3197 3617 1.035932 TCTTCTTAGGACCCGAGCGG 61.036 60.000 1.06 1.06 37.81 5.52
3198 3618 2.630592 CTTCTTAGGACCCGAGCGGC 62.631 65.000 2.79 0.00 33.26 6.53
3199 3619 4.570663 CTTAGGACCCGAGCGGCG 62.571 72.222 0.51 0.51 40.47 6.46
3213 3633 4.630097 GGCGACGACCTACTATGC 57.370 61.111 0.00 0.00 0.00 3.14
3214 3634 1.731700 GGCGACGACCTACTATGCA 59.268 57.895 0.00 0.00 0.00 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.059156 AGATAATTCATTGACCCAGGAAGAAG 58.941 38.462 0.00 0.00 0.00 2.85
3 4 6.460676 GCAAGATAATTCATTGACCCAGGAAG 60.461 42.308 0.00 0.00 0.00 3.46
4 5 5.360714 GCAAGATAATTCATTGACCCAGGAA 59.639 40.000 0.00 0.00 0.00 3.36
5 6 4.889409 GCAAGATAATTCATTGACCCAGGA 59.111 41.667 0.00 0.00 0.00 3.86
6 7 4.646040 TGCAAGATAATTCATTGACCCAGG 59.354 41.667 0.00 0.00 0.00 4.45
7 8 5.840243 TGCAAGATAATTCATTGACCCAG 57.160 39.130 0.00 0.00 0.00 4.45
8 9 6.602410 TTTGCAAGATAATTCATTGACCCA 57.398 33.333 0.00 0.00 0.00 4.51
9 10 7.379529 CGTATTTGCAAGATAATTCATTGACCC 59.620 37.037 0.00 0.00 0.00 4.46
10 11 7.915397 ACGTATTTGCAAGATAATTCATTGACC 59.085 33.333 0.00 0.00 0.00 4.02
11 12 8.736742 CACGTATTTGCAAGATAATTCATTGAC 58.263 33.333 0.00 0.00 0.00 3.18
12 13 8.672815 TCACGTATTTGCAAGATAATTCATTGA 58.327 29.630 0.00 0.00 0.00 2.57
13 14 8.839947 TCACGTATTTGCAAGATAATTCATTG 57.160 30.769 0.00 0.00 0.00 2.82
14 15 9.289303 GTTCACGTATTTGCAAGATAATTCATT 57.711 29.630 0.00 0.00 0.00 2.57
15 16 8.677300 AGTTCACGTATTTGCAAGATAATTCAT 58.323 29.630 0.00 0.00 0.00 2.57
16 17 8.039603 AGTTCACGTATTTGCAAGATAATTCA 57.960 30.769 0.00 0.00 0.00 2.57
20 21 9.982291 GAAATAGTTCACGTATTTGCAAGATAA 57.018 29.630 0.00 0.00 31.58 1.75
21 22 9.378551 AGAAATAGTTCACGTATTTGCAAGATA 57.621 29.630 5.62 0.00 36.09 1.98
22 23 8.268850 AGAAATAGTTCACGTATTTGCAAGAT 57.731 30.769 5.62 0.00 36.09 2.40
23 24 7.667043 AGAAATAGTTCACGTATTTGCAAGA 57.333 32.000 5.62 0.00 36.09 3.02
24 25 8.015087 TGAAGAAATAGTTCACGTATTTGCAAG 58.985 33.333 5.62 0.00 36.09 4.01
25 26 7.866729 TGAAGAAATAGTTCACGTATTTGCAA 58.133 30.769 5.62 0.00 36.09 4.08
26 27 7.428282 TGAAGAAATAGTTCACGTATTTGCA 57.572 32.000 5.62 0.00 36.09 4.08
27 28 8.722342 TTTGAAGAAATAGTTCACGTATTTGC 57.278 30.769 5.62 0.00 36.09 3.68
29 30 9.755064 CGATTTGAAGAAATAGTTCACGTATTT 57.245 29.630 5.62 0.00 36.09 1.40
30 31 9.146984 TCGATTTGAAGAAATAGTTCACGTATT 57.853 29.630 5.62 0.00 36.09 1.89
31 32 8.697846 TCGATTTGAAGAAATAGTTCACGTAT 57.302 30.769 5.62 0.00 36.09 3.06
32 33 8.592155 CATCGATTTGAAGAAATAGTTCACGTA 58.408 33.333 5.62 0.00 36.09 3.57
33 34 7.330946 TCATCGATTTGAAGAAATAGTTCACGT 59.669 33.333 5.62 0.00 36.09 4.49
34 35 7.675478 TCATCGATTTGAAGAAATAGTTCACG 58.325 34.615 5.62 0.00 36.09 4.35
35 36 9.267096 GTTCATCGATTTGAAGAAATAGTTCAC 57.733 33.333 5.62 0.00 36.18 3.18
36 37 9.219603 AGTTCATCGATTTGAAGAAATAGTTCA 57.780 29.630 5.62 0.00 36.18 3.18
73 74 9.526713 TCATTGAATTTGAAAAAGTTCATCGAA 57.473 25.926 0.00 0.00 43.29 3.71
74 75 9.526713 TTCATTGAATTTGAAAAAGTTCATCGA 57.473 25.926 0.00 0.00 43.29 3.59
75 76 9.571804 GTTCATTGAATTTGAAAAAGTTCATCG 57.428 29.630 1.78 0.00 43.29 3.84
423 528 9.643693 AAATGAAAGCATAAATTTGAGAACGAT 57.356 25.926 0.00 0.00 33.44 3.73
501 606 9.832445 GTAATCAGGAAACTATCTATTTGACCA 57.168 33.333 0.00 0.00 40.21 4.02
533 639 0.451783 CTTGGCCGCATTGACTTACC 59.548 55.000 0.00 0.00 0.00 2.85
534 640 1.135689 CACTTGGCCGCATTGACTTAC 60.136 52.381 0.00 0.00 0.00 2.34
540 646 0.817013 ATAACCACTTGGCCGCATTG 59.183 50.000 0.00 0.00 39.32 2.82
566 672 1.336887 GCACACACACGATGACTACCT 60.337 52.381 0.00 0.00 0.00 3.08
600 707 5.745227 TCCAGATGAATTCTAGGTGAAACC 58.255 41.667 7.05 0.00 46.54 3.27
647 756 6.483640 GCCCAATAATCTTCTATTCGAGTTGT 59.516 38.462 0.00 0.00 0.00 3.32
649 758 5.998363 GGCCCAATAATCTTCTATTCGAGTT 59.002 40.000 0.00 0.00 0.00 3.01
650 759 5.552178 GGCCCAATAATCTTCTATTCGAGT 58.448 41.667 0.00 0.00 0.00 4.18
651 760 4.627467 CGGCCCAATAATCTTCTATTCGAG 59.373 45.833 0.00 0.00 0.00 4.04
660 769 4.599036 GGCCGGCCCAATAATCTT 57.401 55.556 36.64 0.00 0.00 2.40
691 800 0.592754 GCTCCTAGTTAGCGCTCGTG 60.593 60.000 16.34 0.47 0.00 4.35
693 802 0.040781 GAGCTCCTAGTTAGCGCTCG 60.041 60.000 16.34 0.00 44.87 5.03
710 819 0.326927 TTTTTGAGGGGTAGCGGGAG 59.673 55.000 0.00 0.00 0.00 4.30
711 820 2.465725 TTTTTGAGGGGTAGCGGGA 58.534 52.632 0.00 0.00 0.00 5.14
775 884 1.448013 GGAAGAACGAAGGCGGGAG 60.448 63.158 0.00 0.00 43.17 4.30
776 885 2.660802 GGAAGAACGAAGGCGGGA 59.339 61.111 0.00 0.00 43.17 5.14
777 886 2.436115 GGGAAGAACGAAGGCGGG 60.436 66.667 0.00 0.00 43.17 6.13
778 887 0.887387 TTTGGGAAGAACGAAGGCGG 60.887 55.000 0.00 0.00 43.17 6.13
779 888 0.948678 TTTTGGGAAGAACGAAGGCG 59.051 50.000 0.00 0.00 44.79 5.52
780 889 1.954382 AGTTTTGGGAAGAACGAAGGC 59.046 47.619 0.00 0.00 0.00 4.35
781 890 2.293399 CCAGTTTTGGGAAGAACGAAGG 59.707 50.000 0.00 0.00 41.05 3.46
782 891 2.287608 GCCAGTTTTGGGAAGAACGAAG 60.288 50.000 0.00 0.00 45.16 3.79
783 892 1.679153 GCCAGTTTTGGGAAGAACGAA 59.321 47.619 0.00 0.00 45.16 3.85
784 893 1.314730 GCCAGTTTTGGGAAGAACGA 58.685 50.000 0.00 0.00 45.16 3.85
785 894 0.040425 CGCCAGTTTTGGGAAGAACG 60.040 55.000 0.00 0.00 45.16 3.95
786 895 0.318699 GCGCCAGTTTTGGGAAGAAC 60.319 55.000 0.00 0.00 45.16 3.01
787 896 0.753479 TGCGCCAGTTTTGGGAAGAA 60.753 50.000 4.18 0.00 45.16 2.52
788 897 1.152860 TGCGCCAGTTTTGGGAAGA 60.153 52.632 4.18 0.00 45.16 2.87
789 898 1.007387 GTGCGCCAGTTTTGGGAAG 60.007 57.895 4.18 0.00 45.16 3.46
790 899 1.323271 TTGTGCGCCAGTTTTGGGAA 61.323 50.000 4.18 0.00 45.16 3.97
791 900 1.112315 ATTGTGCGCCAGTTTTGGGA 61.112 50.000 4.18 0.00 45.16 4.37
792 901 0.945265 CATTGTGCGCCAGTTTTGGG 60.945 55.000 4.18 0.00 45.16 4.12
794 903 1.850377 TTCATTGTGCGCCAGTTTTG 58.150 45.000 4.18 0.00 0.00 2.44
795 904 2.200899 GTTTCATTGTGCGCCAGTTTT 58.799 42.857 4.18 0.00 0.00 2.43
796 905 1.851658 GTTTCATTGTGCGCCAGTTT 58.148 45.000 4.18 0.00 0.00 2.66
797 906 0.317770 CGTTTCATTGTGCGCCAGTT 60.318 50.000 4.18 0.00 0.00 3.16
798 907 1.282570 CGTTTCATTGTGCGCCAGT 59.717 52.632 4.18 0.00 0.00 4.00
799 908 2.082366 GCGTTTCATTGTGCGCCAG 61.082 57.895 4.18 0.00 43.52 4.85
800 909 2.050533 GCGTTTCATTGTGCGCCA 60.051 55.556 4.18 0.00 43.52 5.69
803 912 1.370293 TGCAGCGTTTCATTGTGCG 60.370 52.632 0.00 0.00 36.92 5.34
804 913 1.599422 CGTGCAGCGTTTCATTGTGC 61.599 55.000 0.00 0.00 35.54 4.57
805 914 0.998226 CCGTGCAGCGTTTCATTGTG 60.998 55.000 7.68 0.00 39.32 3.33
806 915 1.282570 CCGTGCAGCGTTTCATTGT 59.717 52.632 7.68 0.00 39.32 2.71
807 916 1.442520 CCCGTGCAGCGTTTCATTG 60.443 57.895 7.68 0.00 39.32 2.82
808 917 2.953821 CCCGTGCAGCGTTTCATT 59.046 55.556 7.68 0.00 39.32 2.57
809 918 3.737172 GCCCGTGCAGCGTTTCAT 61.737 61.111 7.68 0.00 39.32 2.57
820 929 4.038080 GAAGTTTGCCGGCCCGTG 62.038 66.667 26.77 0.00 0.00 4.94
821 930 4.265056 AGAAGTTTGCCGGCCCGT 62.265 61.111 26.77 10.19 0.00 5.28
822 931 3.431725 GAGAAGTTTGCCGGCCCG 61.432 66.667 26.77 0.00 0.00 6.13
823 932 1.901464 TTGAGAAGTTTGCCGGCCC 60.901 57.895 26.77 12.19 0.00 5.80
824 933 1.172812 AGTTGAGAAGTTTGCCGGCC 61.173 55.000 26.77 8.84 0.00 6.13
825 934 0.040067 CAGTTGAGAAGTTTGCCGGC 60.040 55.000 22.73 22.73 0.00 6.13
826 935 0.593128 CCAGTTGAGAAGTTTGCCGG 59.407 55.000 0.00 0.00 0.00 6.13
827 936 1.308998 ACCAGTTGAGAAGTTTGCCG 58.691 50.000 0.00 0.00 0.00 5.69
828 937 4.911514 TTAACCAGTTGAGAAGTTTGCC 57.088 40.909 0.00 0.00 0.00 4.52
868 977 6.423905 CGAGACTGTCTCAAAAATACTTTCCA 59.576 38.462 30.84 0.00 43.55 3.53
906 1015 2.823924 TATGTATACGCGGTTGGCAT 57.176 45.000 12.47 10.58 43.84 4.40
942 1054 1.930908 CTCTGTACGTCCACGGTCCC 61.931 65.000 3.81 0.00 44.95 4.46
946 1058 2.181021 GCCTCTGTACGTCCACGG 59.819 66.667 3.81 0.00 44.95 4.94
948 1060 0.666577 GTGTGCCTCTGTACGTCCAC 60.667 60.000 0.00 0.00 0.00 4.02
1276 1416 3.848142 CTCGAACACGAGCCACTG 58.152 61.111 6.70 0.00 44.89 3.66
1925 2290 3.554692 CGACGAACAGCATCCGGC 61.555 66.667 0.00 0.00 45.30 6.13
2019 2393 2.681848 GTCCTCCGTGAAGAAGATACGA 59.318 50.000 0.00 0.00 40.01 3.43
2054 2428 8.487970 GTTTGTGGTAGTATCGATGATTGTATG 58.512 37.037 8.54 0.00 0.00 2.39
2076 2456 0.537371 AGAAGGGCTCCGGTTGTTTG 60.537 55.000 0.00 0.00 0.00 2.93
2204 2584 2.573369 TCAGTCGTAGCTATCCCTGAC 58.427 52.381 12.50 8.97 0.00 3.51
2217 2597 0.396435 TGGCCATTCACTTCAGTCGT 59.604 50.000 0.00 0.00 0.00 4.34
2222 2602 2.957402 AGAACTGGCCATTCACTTCA 57.043 45.000 22.09 0.00 0.00 3.02
2223 2603 4.775236 AGATAGAACTGGCCATTCACTTC 58.225 43.478 22.09 16.55 0.00 3.01
2224 2604 4.851639 AGATAGAACTGGCCATTCACTT 57.148 40.909 22.09 11.25 0.00 3.16
2225 2605 5.744300 GCATAGATAGAACTGGCCATTCACT 60.744 44.000 22.09 19.17 0.00 3.41
2226 2606 4.453819 GCATAGATAGAACTGGCCATTCAC 59.546 45.833 22.09 15.25 0.00 3.18
2234 2614 6.148976 CCAACATCATGCATAGATAGAACTGG 59.851 42.308 0.00 4.84 0.00 4.00
2237 2617 5.471116 TGCCAACATCATGCATAGATAGAAC 59.529 40.000 0.00 0.00 0.00 3.01
2244 2624 1.000607 GCCTGCCAACATCATGCATAG 60.001 52.381 0.00 0.00 33.97 2.23
2260 2666 3.518998 GCCAGCATGCAGAGCCTG 61.519 66.667 21.98 7.97 31.97 4.85
2288 2698 4.256920 GCAATCATCAGACCAAGTACAGT 58.743 43.478 0.00 0.00 0.00 3.55
2289 2699 4.256110 TGCAATCATCAGACCAAGTACAG 58.744 43.478 0.00 0.00 0.00 2.74
2293 2703 3.256631 GGTTTGCAATCATCAGACCAAGT 59.743 43.478 0.00 0.00 38.26 3.16
2294 2704 3.508793 AGGTTTGCAATCATCAGACCAAG 59.491 43.478 14.85 0.00 40.14 3.61
2295 2705 3.499338 AGGTTTGCAATCATCAGACCAA 58.501 40.909 14.85 0.00 40.14 3.67
2296 2706 3.159213 AGGTTTGCAATCATCAGACCA 57.841 42.857 14.85 0.00 40.14 4.02
2297 2707 4.943705 TCTTAGGTTTGCAATCATCAGACC 59.056 41.667 0.00 2.62 38.55 3.85
2298 2708 6.094603 ACATCTTAGGTTTGCAATCATCAGAC 59.905 38.462 0.00 0.00 0.00 3.51
2299 2709 6.182627 ACATCTTAGGTTTGCAATCATCAGA 58.817 36.000 0.00 4.17 0.00 3.27
2300 2710 6.446781 ACATCTTAGGTTTGCAATCATCAG 57.553 37.500 0.00 0.00 0.00 2.90
2316 2726 5.075858 ACGTTGACGGGAAATACATCTTA 57.924 39.130 8.52 0.00 44.95 2.10
2317 2727 3.934068 ACGTTGACGGGAAATACATCTT 58.066 40.909 8.52 0.00 44.95 2.40
2323 2733 2.037511 AGGACAACGTTGACGGGAAATA 59.962 45.455 33.66 0.00 44.95 1.40
2331 2741 0.320508 GGAGGGAGGACAACGTTGAC 60.321 60.000 33.66 26.67 0.00 3.18
2332 2742 1.812686 CGGAGGGAGGACAACGTTGA 61.813 60.000 33.66 0.00 0.00 3.18
2347 2757 1.664151 GCGGAGTAAAAATGACCGGAG 59.336 52.381 9.46 0.00 43.15 4.63
2348 2758 1.729284 GCGGAGTAAAAATGACCGGA 58.271 50.000 9.46 0.00 43.15 5.14
2349 2759 0.372334 CGCGGAGTAAAAATGACCGG 59.628 55.000 0.00 0.00 43.15 5.28
2350 2760 1.073177 ACGCGGAGTAAAAATGACCG 58.927 50.000 12.47 0.00 45.26 4.79
2351 2761 4.870221 AATACGCGGAGTAAAAATGACC 57.130 40.909 12.47 0.00 39.04 4.02
2352 2762 6.817270 TCTAATACGCGGAGTAAAAATGAC 57.183 37.500 12.47 0.00 39.04 3.06
2353 2763 8.428186 AAATCTAATACGCGGAGTAAAAATGA 57.572 30.769 12.47 0.00 39.04 2.57
2354 2764 9.498307 AAAAATCTAATACGCGGAGTAAAAATG 57.502 29.630 12.47 0.00 39.04 2.32
2355 2765 9.498307 CAAAAATCTAATACGCGGAGTAAAAAT 57.502 29.630 12.47 0.00 39.04 1.82
2356 2766 8.505625 ACAAAAATCTAATACGCGGAGTAAAAA 58.494 29.630 12.47 0.00 39.04 1.94
2357 2767 8.031848 ACAAAAATCTAATACGCGGAGTAAAA 57.968 30.769 12.47 0.00 39.04 1.52
2358 2768 7.331440 TGACAAAAATCTAATACGCGGAGTAAA 59.669 33.333 12.47 0.00 39.04 2.01
2359 2769 6.812656 TGACAAAAATCTAATACGCGGAGTAA 59.187 34.615 12.47 0.00 39.04 2.24
2360 2770 6.331845 TGACAAAAATCTAATACGCGGAGTA 58.668 36.000 12.47 4.11 40.03 2.59
2361 2771 5.172934 TGACAAAAATCTAATACGCGGAGT 58.827 37.500 12.47 2.60 0.00 3.85
2362 2772 5.712217 TGACAAAAATCTAATACGCGGAG 57.288 39.130 12.47 1.75 0.00 4.63
2363 2773 5.640357 ACTTGACAAAAATCTAATACGCGGA 59.360 36.000 12.47 0.00 0.00 5.54
2364 2774 5.864986 ACTTGACAAAAATCTAATACGCGG 58.135 37.500 12.47 0.00 0.00 6.46
2365 2775 6.530567 TGACTTGACAAAAATCTAATACGCG 58.469 36.000 3.53 3.53 0.00 6.01
2366 2776 8.722342 TTTGACTTGACAAAAATCTAATACGC 57.278 30.769 0.00 0.00 36.92 4.42
2378 2788 6.696411 ACTTGGTTGATTTTGACTTGACAAA 58.304 32.000 0.00 0.00 37.87 2.83
2379 2789 6.279513 ACTTGGTTGATTTTGACTTGACAA 57.720 33.333 0.00 0.00 0.00 3.18
2380 2790 5.913137 ACTTGGTTGATTTTGACTTGACA 57.087 34.783 0.00 0.00 0.00 3.58
2381 2791 6.811170 TCAAACTTGGTTGATTTTGACTTGAC 59.189 34.615 0.00 0.00 33.96 3.18
2382 2792 6.929625 TCAAACTTGGTTGATTTTGACTTGA 58.070 32.000 0.00 0.00 33.96 3.02
2387 2797 5.420421 TCTGGTCAAACTTGGTTGATTTTGA 59.580 36.000 4.32 0.00 39.61 2.69
2388 2798 5.659463 TCTGGTCAAACTTGGTTGATTTTG 58.341 37.500 4.32 0.00 39.61 2.44
2389 2799 5.930837 TCTGGTCAAACTTGGTTGATTTT 57.069 34.783 4.32 0.00 39.61 1.82
2390 2800 6.484364 AATCTGGTCAAACTTGGTTGATTT 57.516 33.333 4.32 0.00 39.61 2.17
2391 2801 6.484364 AAATCTGGTCAAACTTGGTTGATT 57.516 33.333 4.32 0.00 39.61 2.57
2392 2802 7.781324 ATAAATCTGGTCAAACTTGGTTGAT 57.219 32.000 4.32 0.00 39.61 2.57
2393 2803 8.877864 ATATAAATCTGGTCAAACTTGGTTGA 57.122 30.769 0.00 0.00 35.14 3.18
2536 2946 6.989659 TGTCCGAAGTCAAAGTATCTTTACT 58.010 36.000 0.00 0.00 40.48 2.24
2537 2947 7.647907 TTGTCCGAAGTCAAAGTATCTTTAC 57.352 36.000 0.00 0.00 0.00 2.01
2538 2948 8.842358 ATTTGTCCGAAGTCAAAGTATCTTTA 57.158 30.769 0.00 0.00 37.06 1.85
2539 2949 7.661847 AGATTTGTCCGAAGTCAAAGTATCTTT 59.338 33.333 0.00 0.00 37.06 2.52
2540 2950 7.162082 AGATTTGTCCGAAGTCAAAGTATCTT 58.838 34.615 0.00 0.00 37.06 2.40
2541 2951 6.702329 AGATTTGTCCGAAGTCAAAGTATCT 58.298 36.000 0.00 0.00 37.06 1.98
2542 2952 6.969828 AGATTTGTCCGAAGTCAAAGTATC 57.030 37.500 0.00 0.00 37.06 2.24
2545 2955 8.883731 CATATAAGATTTGTCCGAAGTCAAAGT 58.116 33.333 0.00 0.00 37.06 2.66
2546 2956 7.852945 GCATATAAGATTTGTCCGAAGTCAAAG 59.147 37.037 0.00 0.00 37.06 2.77
2547 2957 7.335673 TGCATATAAGATTTGTCCGAAGTCAAA 59.664 33.333 0.00 0.00 37.82 2.69
2548 2958 6.821160 TGCATATAAGATTTGTCCGAAGTCAA 59.179 34.615 0.00 0.00 0.00 3.18
2549 2959 6.345298 TGCATATAAGATTTGTCCGAAGTCA 58.655 36.000 0.00 0.00 0.00 3.41
2550 2960 6.844696 TGCATATAAGATTTGTCCGAAGTC 57.155 37.500 0.00 0.00 0.00 3.01
2551 2961 7.336931 AGTTTGCATATAAGATTTGTCCGAAGT 59.663 33.333 0.00 0.00 0.00 3.01
2552 2962 7.697691 AGTTTGCATATAAGATTTGTCCGAAG 58.302 34.615 0.00 0.00 0.00 3.79
2553 2963 7.624360 AGTTTGCATATAAGATTTGTCCGAA 57.376 32.000 0.00 0.00 0.00 4.30
2554 2964 8.725405 TTAGTTTGCATATAAGATTTGTCCGA 57.275 30.769 0.00 0.00 0.00 4.55
2555 2965 9.781834 TTTTAGTTTGCATATAAGATTTGTCCG 57.218 29.630 0.00 0.00 0.00 4.79
2562 2972 8.621286 CGGTCCTTTTTAGTTTGCATATAAGAT 58.379 33.333 0.00 0.00 0.00 2.40
2563 2973 7.414762 GCGGTCCTTTTTAGTTTGCATATAAGA 60.415 37.037 0.00 0.00 0.00 2.10
2564 2974 6.691388 GCGGTCCTTTTTAGTTTGCATATAAG 59.309 38.462 0.00 0.00 0.00 1.73
2565 2975 6.404954 GGCGGTCCTTTTTAGTTTGCATATAA 60.405 38.462 0.00 0.00 0.00 0.98
2566 2976 5.066764 GGCGGTCCTTTTTAGTTTGCATATA 59.933 40.000 0.00 0.00 0.00 0.86
2567 2977 4.142249 GGCGGTCCTTTTTAGTTTGCATAT 60.142 41.667 0.00 0.00 0.00 1.78
2568 2978 3.191791 GGCGGTCCTTTTTAGTTTGCATA 59.808 43.478 0.00 0.00 0.00 3.14
2569 2979 2.029380 GGCGGTCCTTTTTAGTTTGCAT 60.029 45.455 0.00 0.00 0.00 3.96
2570 2980 1.338655 GGCGGTCCTTTTTAGTTTGCA 59.661 47.619 0.00 0.00 0.00 4.08
2571 2981 1.611977 AGGCGGTCCTTTTTAGTTTGC 59.388 47.619 0.00 0.00 40.66 3.68
2572 2982 3.146847 AGAGGCGGTCCTTTTTAGTTTG 58.853 45.455 0.00 0.00 44.46 2.93
2573 2983 3.503800 AGAGGCGGTCCTTTTTAGTTT 57.496 42.857 0.00 0.00 44.46 2.66
2574 2984 3.325716 TGTAGAGGCGGTCCTTTTTAGTT 59.674 43.478 0.00 0.00 44.46 2.24
2575 2985 2.901839 TGTAGAGGCGGTCCTTTTTAGT 59.098 45.455 0.00 0.00 44.46 2.24
2576 2986 3.604875 TGTAGAGGCGGTCCTTTTTAG 57.395 47.619 0.00 0.00 44.46 1.85
2577 2987 3.325716 ACTTGTAGAGGCGGTCCTTTTTA 59.674 43.478 0.00 0.00 44.46 1.52
2578 2988 2.105993 ACTTGTAGAGGCGGTCCTTTTT 59.894 45.455 0.00 0.00 44.46 1.94
2579 2989 1.697982 ACTTGTAGAGGCGGTCCTTTT 59.302 47.619 0.00 0.00 44.46 2.27
2580 2990 1.275573 GACTTGTAGAGGCGGTCCTTT 59.724 52.381 0.00 0.00 44.46 3.11
2581 2991 0.896226 GACTTGTAGAGGCGGTCCTT 59.104 55.000 0.00 0.00 44.46 3.36
2583 2993 1.677052 CTAGACTTGTAGAGGCGGTCC 59.323 57.143 0.00 0.00 38.95 4.46
2584 2994 2.641305 TCTAGACTTGTAGAGGCGGTC 58.359 52.381 0.00 0.00 38.95 4.79
2585 2995 2.803030 TCTAGACTTGTAGAGGCGGT 57.197 50.000 0.00 0.00 38.95 5.68
2586 2996 5.968528 AATATCTAGACTTGTAGAGGCGG 57.031 43.478 0.00 0.00 38.95 6.13
2587 2997 7.209471 AGAAATATCTAGACTTGTAGAGGCG 57.791 40.000 0.00 0.00 38.95 5.52
2636 3046 6.353404 TCTAACACACAACATCTACCATGA 57.647 37.500 0.00 0.00 0.00 3.07
2640 3050 8.942338 TGAATATCTAACACACAACATCTACC 57.058 34.615 0.00 0.00 0.00 3.18
2671 3086 2.432510 TGGCAACCGGTTCTCAAATTTT 59.567 40.909 19.24 0.00 0.00 1.82
2723 3138 2.117865 CATTGTGGGGCCCAACATATT 58.882 47.619 33.24 17.66 34.18 1.28
2744 3159 4.726825 TGGAGATGCCCTTATAGACCTTTT 59.273 41.667 0.00 0.00 34.97 2.27
2754 3169 3.634397 CAGAGTTTGGAGATGCCCTTA 57.366 47.619 0.00 0.00 34.97 2.69
2771 3186 0.887933 GAGAAAATTTGGGCGCCAGA 59.112 50.000 30.85 13.49 33.81 3.86
2774 3189 1.153842 CGGAGAAAATTTGGGCGCC 60.154 57.895 21.18 21.18 0.00 6.53
2775 3190 1.153842 CCGGAGAAAATTTGGGCGC 60.154 57.895 0.00 0.00 0.00 6.53
2777 3192 0.536724 ATGCCGGAGAAAATTTGGGC 59.463 50.000 5.05 1.23 40.88 5.36
2780 3195 3.806625 ATGGATGCCGGAGAAAATTTG 57.193 42.857 5.05 0.00 0.00 2.32
2804 3219 3.770040 CTCCCGCATCCGTGTCCA 61.770 66.667 0.00 0.00 0.00 4.02
2805 3220 3.458163 TCTCCCGCATCCGTGTCC 61.458 66.667 0.00 0.00 0.00 4.02
2806 3221 2.202756 GTCTCCCGCATCCGTGTC 60.203 66.667 0.00 0.00 0.00 3.67
2807 3222 4.129737 CGTCTCCCGCATCCGTGT 62.130 66.667 0.00 0.00 0.00 4.49
2810 3225 4.570663 GACCGTCTCCCGCATCCG 62.571 72.222 0.00 0.00 34.38 4.18
2811 3226 2.311688 AATGACCGTCTCCCGCATCC 62.312 60.000 0.00 0.00 34.38 3.51
2812 3227 0.876342 GAATGACCGTCTCCCGCATC 60.876 60.000 0.00 0.00 34.38 3.91
2813 3228 1.144057 GAATGACCGTCTCCCGCAT 59.856 57.895 0.00 0.00 34.38 4.73
2814 3229 1.822114 TTGAATGACCGTCTCCCGCA 61.822 55.000 0.00 0.00 34.38 5.69
2815 3230 1.079405 TTGAATGACCGTCTCCCGC 60.079 57.895 0.00 0.00 34.38 6.13
2816 3231 1.076533 CGTTGAATGACCGTCTCCCG 61.077 60.000 0.00 0.00 0.00 5.14
2817 3232 1.359459 GCGTTGAATGACCGTCTCCC 61.359 60.000 0.00 0.00 0.00 4.30
2821 3236 2.776072 CGGCGTTGAATGACCGTC 59.224 61.111 0.00 0.00 40.77 4.79
2824 3239 3.810896 GGGCGGCGTTGAATGACC 61.811 66.667 9.37 0.00 0.00 4.02
2837 3252 1.355210 GTGGAATTGTATGCGGGCG 59.645 57.895 0.00 0.00 0.00 6.13
2838 3253 1.733526 GGTGGAATTGTATGCGGGC 59.266 57.895 0.00 0.00 0.00 6.13
2839 3254 0.395036 TGGGTGGAATTGTATGCGGG 60.395 55.000 0.00 0.00 0.00 6.13
2844 3259 6.319715 AGTTAAAACCTGGGTGGAATTGTAT 58.680 36.000 0.00 0.00 39.71 2.29
2853 3268 2.815503 CCGGTTAGTTAAAACCTGGGTG 59.184 50.000 7.34 0.00 45.69 4.61
2858 3273 6.964807 ATTTTGTCCGGTTAGTTAAAACCT 57.035 33.333 0.00 0.00 45.69 3.50
2860 3275 8.631676 TTGAATTTTGTCCGGTTAGTTAAAAC 57.368 30.769 0.00 0.00 0.00 2.43
2864 3279 5.531659 TGCTTGAATTTTGTCCGGTTAGTTA 59.468 36.000 0.00 0.00 0.00 2.24
2876 3291 2.606725 TGCCGTGTTTGCTTGAATTTTG 59.393 40.909 0.00 0.00 0.00 2.44
2877 3292 2.898705 TGCCGTGTTTGCTTGAATTTT 58.101 38.095 0.00 0.00 0.00 1.82
2967 3387 2.345641 CGCCGGCGATCATTTAGATTAG 59.654 50.000 44.86 7.86 42.83 1.73
2987 3407 4.473520 AGGCATGGAGAACGGGCG 62.474 66.667 0.00 0.00 0.00 6.13
3011 3431 2.434359 CTTCGGTTCTCGGGGCAC 60.434 66.667 0.00 0.00 39.77 5.01
3012 3432 4.388499 GCTTCGGTTCTCGGGGCA 62.388 66.667 0.00 0.00 39.77 5.36
3017 3437 1.807573 GCTGGAGCTTCGGTTCTCG 60.808 63.158 1.91 0.00 38.21 4.04
3018 3438 4.193653 GCTGGAGCTTCGGTTCTC 57.806 61.111 1.91 0.00 38.21 2.87
3031 3451 3.618780 AAGCGAAGGCAGGAGCTGG 62.619 63.158 0.00 0.00 43.41 4.85
3032 3452 1.642952 GAAAGCGAAGGCAGGAGCTG 61.643 60.000 0.00 0.00 43.41 4.24
3033 3453 1.376553 GAAAGCGAAGGCAGGAGCT 60.377 57.895 0.00 0.00 43.41 4.09
3034 3454 1.365368 GAGAAAGCGAAGGCAGGAGC 61.365 60.000 0.00 0.00 43.41 4.70
3035 3455 0.742635 GGAGAAAGCGAAGGCAGGAG 60.743 60.000 0.00 0.00 43.41 3.69
3036 3456 1.296715 GGAGAAAGCGAAGGCAGGA 59.703 57.895 0.00 0.00 43.41 3.86
3037 3457 0.606401 TTGGAGAAAGCGAAGGCAGG 60.606 55.000 0.00 0.00 43.41 4.85
3038 3458 0.519077 GTTGGAGAAAGCGAAGGCAG 59.481 55.000 0.00 0.00 43.41 4.85
3039 3459 0.108585 AGTTGGAGAAAGCGAAGGCA 59.891 50.000 0.00 0.00 43.41 4.75
3040 3460 0.799393 GAGTTGGAGAAAGCGAAGGC 59.201 55.000 0.00 0.00 40.37 4.35
3041 3461 1.443802 GGAGTTGGAGAAAGCGAAGG 58.556 55.000 0.00 0.00 0.00 3.46
3042 3462 1.071605 CGGAGTTGGAGAAAGCGAAG 58.928 55.000 0.00 0.00 0.00 3.79
3043 3463 0.949105 GCGGAGTTGGAGAAAGCGAA 60.949 55.000 0.00 0.00 0.00 4.70
3044 3464 1.374252 GCGGAGTTGGAGAAAGCGA 60.374 57.895 0.00 0.00 0.00 4.93
3045 3465 2.391389 GGCGGAGTTGGAGAAAGCG 61.391 63.158 0.00 0.00 0.00 4.68
3046 3466 1.003233 AGGCGGAGTTGGAGAAAGC 60.003 57.895 0.00 0.00 0.00 3.51
3047 3467 0.737715 CGAGGCGGAGTTGGAGAAAG 60.738 60.000 0.00 0.00 0.00 2.62
3048 3468 1.292223 CGAGGCGGAGTTGGAGAAA 59.708 57.895 0.00 0.00 0.00 2.52
3049 3469 2.970639 CGAGGCGGAGTTGGAGAA 59.029 61.111 0.00 0.00 0.00 2.87
3068 3488 4.749310 AGGCAGCGTTGGAGAGCG 62.749 66.667 0.16 0.00 38.61 5.03
3069 3489 2.817396 GAGGCAGCGTTGGAGAGC 60.817 66.667 0.16 0.00 0.00 4.09
3070 3490 1.447489 CAGAGGCAGCGTTGGAGAG 60.447 63.158 0.16 0.00 0.00 3.20
3071 3491 2.659016 CAGAGGCAGCGTTGGAGA 59.341 61.111 0.16 0.00 0.00 3.71
3072 3492 3.123620 GCAGAGGCAGCGTTGGAG 61.124 66.667 0.16 0.00 40.72 3.86
3104 3524 1.493950 CCGATTAGCCGCTCAAGCTG 61.494 60.000 0.00 0.00 41.71 4.24
3105 3525 1.227380 CCGATTAGCCGCTCAAGCT 60.227 57.895 0.00 0.00 44.49 3.74
3106 3526 2.886782 GCCGATTAGCCGCTCAAGC 61.887 63.158 0.00 0.00 37.78 4.01
3107 3527 2.247437 GGCCGATTAGCCGCTCAAG 61.247 63.158 0.00 0.00 44.57 3.02
3108 3528 2.203015 GGCCGATTAGCCGCTCAA 60.203 61.111 0.00 0.00 44.57 3.02
3121 3541 2.399611 GCTGAAAATCGACGGCCG 59.600 61.111 26.86 26.86 40.25 6.13
3123 3543 2.791927 GGGCTGAAAATCGACGGC 59.208 61.111 0.00 0.00 37.63 5.68
3124 3544 3.089784 CGGGCTGAAAATCGACGG 58.910 61.111 0.00 0.00 0.00 4.79
3125 3545 2.399611 GCGGGCTGAAAATCGACG 59.600 61.111 0.00 0.00 0.00 5.12
3126 3546 1.582610 TTGGCGGGCTGAAAATCGAC 61.583 55.000 0.00 0.00 0.00 4.20
3127 3547 1.302913 TTGGCGGGCTGAAAATCGA 60.303 52.632 0.00 0.00 0.00 3.59
3128 3548 1.137404 CTTGGCGGGCTGAAAATCG 59.863 57.895 0.00 0.00 0.00 3.34
3129 3549 1.153765 GCTTGGCGGGCTGAAAATC 60.154 57.895 0.00 0.00 0.00 2.17
3130 3550 1.187567 AAGCTTGGCGGGCTGAAAAT 61.188 50.000 0.00 0.00 40.19 1.82
3131 3551 1.832167 AAGCTTGGCGGGCTGAAAA 60.832 52.632 0.00 0.00 40.19 2.29
3132 3552 2.203480 AAGCTTGGCGGGCTGAAA 60.203 55.556 0.00 0.00 40.19 2.69
3133 3553 2.985282 CAAGCTTGGCGGGCTGAA 60.985 61.111 19.14 0.00 40.19 3.02
3145 3565 3.618780 CTCCCGCTGAAGCCAAGCT 62.619 63.158 0.00 0.00 42.56 3.74
3146 3566 3.130160 CTCCCGCTGAAGCCAAGC 61.130 66.667 0.00 0.00 37.91 4.01
3147 3567 2.437359 CCTCCCGCTGAAGCCAAG 60.437 66.667 0.00 0.00 37.91 3.61
3148 3568 4.033776 CCCTCCCGCTGAAGCCAA 62.034 66.667 0.00 0.00 37.91 4.52
3151 3571 3.689002 CTTCCCCTCCCGCTGAAGC 62.689 68.421 0.00 0.00 37.78 3.86
3152 3572 1.965754 CTCTTCCCCTCCCGCTGAAG 61.966 65.000 0.00 0.00 36.42 3.02
3153 3573 1.990060 CTCTTCCCCTCCCGCTGAA 60.990 63.158 0.00 0.00 0.00 3.02
3154 3574 2.364317 CTCTTCCCCTCCCGCTGA 60.364 66.667 0.00 0.00 0.00 4.26
3155 3575 4.168291 GCTCTTCCCCTCCCGCTG 62.168 72.222 0.00 0.00 0.00 5.18
3159 3579 3.787001 CACCGCTCTTCCCCTCCC 61.787 72.222 0.00 0.00 0.00 4.30
3160 3580 3.787001 CCACCGCTCTTCCCCTCC 61.787 72.222 0.00 0.00 0.00 4.30
3161 3581 3.003763 ACCACCGCTCTTCCCCTC 61.004 66.667 0.00 0.00 0.00 4.30
3162 3582 3.003763 GACCACCGCTCTTCCCCT 61.004 66.667 0.00 0.00 0.00 4.79
3163 3583 2.523453 GAAGACCACCGCTCTTCCCC 62.523 65.000 2.06 0.00 38.39 4.81
3164 3584 1.079057 GAAGACCACCGCTCTTCCC 60.079 63.158 2.06 0.00 38.39 3.97
3165 3585 0.321996 AAGAAGACCACCGCTCTTCC 59.678 55.000 8.57 0.00 43.25 3.46
3166 3586 2.417515 CCTAAGAAGACCACCGCTCTTC 60.418 54.545 4.84 4.84 42.77 2.87
3167 3587 1.550976 CCTAAGAAGACCACCGCTCTT 59.449 52.381 0.00 0.00 0.00 2.85
3168 3588 1.187087 CCTAAGAAGACCACCGCTCT 58.813 55.000 0.00 0.00 0.00 4.09
3169 3589 1.135053 GTCCTAAGAAGACCACCGCTC 60.135 57.143 0.00 0.00 0.00 5.03
3170 3590 0.896226 GTCCTAAGAAGACCACCGCT 59.104 55.000 0.00 0.00 0.00 5.52
3171 3591 3.437746 GTCCTAAGAAGACCACCGC 57.562 57.895 0.00 0.00 0.00 5.68
3177 3597 0.100861 CGCTCGGGTCCTAAGAAGAC 59.899 60.000 0.00 0.00 0.00 3.01
3178 3598 1.035932 CCGCTCGGGTCCTAAGAAGA 61.036 60.000 0.00 0.00 0.00 2.87
3179 3599 1.437986 CCGCTCGGGTCCTAAGAAG 59.562 63.158 0.00 0.00 0.00 2.85
3180 3600 2.718073 GCCGCTCGGGTCCTAAGAA 61.718 63.158 10.57 0.00 38.44 2.52
3181 3601 3.145551 GCCGCTCGGGTCCTAAGA 61.146 66.667 10.57 0.00 38.44 2.10
3182 3602 4.570663 CGCCGCTCGGGTCCTAAG 62.571 72.222 10.57 0.00 38.44 2.18
3191 3611 4.883300 GTAGGTCGTCGCCGCTCG 62.883 72.222 0.00 0.00 40.15 5.03
3192 3612 1.505477 ATAGTAGGTCGTCGCCGCTC 61.505 60.000 8.25 1.85 0.00 5.03
3193 3613 1.525535 ATAGTAGGTCGTCGCCGCT 60.526 57.895 0.00 0.03 0.00 5.52
3194 3614 1.370172 CATAGTAGGTCGTCGCCGC 60.370 63.158 0.00 0.00 0.00 6.53
3195 3615 1.370172 GCATAGTAGGTCGTCGCCG 60.370 63.158 0.00 0.00 0.00 6.46
3196 3616 1.731700 TGCATAGTAGGTCGTCGCC 59.268 57.895 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.