Multiple sequence alignment - TraesCS1D01G422000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G422000 chr1D 100.000 2651 0 0 1 2651 477501354 477498704 0.000000e+00 4896.0
1 TraesCS1D01G422000 chr1D 92.793 111 8 0 1283 1393 217006899 217006789 7.590000e-36 161.0
2 TraesCS1D01G422000 chr1B 88.706 1638 90 38 250 1850 665100695 665099116 0.000000e+00 1912.0
3 TraesCS1D01G422000 chr1B 100.000 31 0 0 440 470 665104789 665104759 1.020000e-04 58.4
4 TraesCS1D01G422000 chr1A 90.696 1279 46 30 256 1520 573945299 573944080 0.000000e+00 1635.0
5 TraesCS1D01G422000 chr1A 92.318 742 38 9 918 1654 573931305 573930578 0.000000e+00 1037.0
6 TraesCS1D01G422000 chr1A 93.617 329 12 6 2300 2628 573943382 573943063 1.430000e-132 483.0
7 TraesCS1D01G422000 chr1A 85.361 485 27 18 403 872 573931763 573931308 1.860000e-126 462.0
8 TraesCS1D01G422000 chr1A 92.254 284 15 2 1669 1952 573943650 573943374 1.910000e-106 396.0
9 TraesCS1D01G422000 chr3D 92.464 345 25 1 1953 2296 505420740 505421084 2.370000e-135 492.0
10 TraesCS1D01G422000 chr3D 90.476 168 10 2 29 190 48940449 48940282 1.600000e-52 217.0
11 TraesCS1D01G422000 chr5A 92.398 342 25 1 1955 2295 701968502 701968843 1.100000e-133 486.0
12 TraesCS1D01G422000 chr5A 89.595 346 34 2 1952 2296 297712645 297712989 3.130000e-119 438.0
13 TraesCS1D01G422000 chr5A 89.398 349 34 3 1953 2299 704609775 704609428 1.130000e-118 436.0
14 TraesCS1D01G422000 chr6A 90.831 349 26 5 1952 2296 64264774 64265120 1.860000e-126 462.0
15 TraesCS1D01G422000 chr6A 89.941 169 11 3 29 191 96077050 96076882 2.070000e-51 213.0
16 TraesCS1D01G422000 chr7D 89.943 348 33 2 1953 2299 53333768 53333422 5.210000e-122 448.0
17 TraesCS1D01G422000 chr7D 90.000 170 11 2 29 192 269985996 269985827 5.750000e-52 215.0
18 TraesCS1D01G422000 chr7D 88.953 172 12 3 29 194 448510874 448511044 3.460000e-49 206.0
19 TraesCS1D01G422000 chr7D 100.000 30 0 0 2511 2540 567516648 567516619 3.690000e-04 56.5
20 TraesCS1D01G422000 chr2A 88.950 362 36 3 1953 2311 726204072 726204432 6.730000e-121 444.0
21 TraesCS1D01G422000 chr2A 89.275 345 34 3 1953 2296 615743919 615744261 1.890000e-116 429.0
22 TraesCS1D01G422000 chr2D 89.143 350 36 2 1953 2301 21060196 21060544 4.050000e-118 435.0
23 TraesCS1D01G422000 chr2D 94.595 111 6 0 1283 1393 469198587 469198477 3.510000e-39 172.0
24 TraesCS1D01G422000 chr2D 93.694 111 7 0 1283 1393 427532726 427532836 1.630000e-37 167.0
25 TraesCS1D01G422000 chr2D 93.694 111 7 0 1283 1393 427537281 427537171 1.630000e-37 167.0
26 TraesCS1D01G422000 chr2B 90.000 340 24 6 984 1323 682193759 682194088 5.240000e-117 431.0
27 TraesCS1D01G422000 chr2B 92.857 112 8 0 1282 1393 468442190 468442301 2.110000e-36 163.0
28 TraesCS1D01G422000 chr4D 90.476 168 10 2 29 190 36536001 36536168 1.600000e-52 217.0
29 TraesCS1D01G422000 chr4D 90.000 170 11 2 29 192 93545951 93546120 5.750000e-52 215.0
30 TraesCS1D01G422000 chr6D 90.361 166 10 2 29 188 28893472 28893307 2.070000e-51 213.0
31 TraesCS1D01G422000 chr4A 89.941 169 10 5 29 190 591853932 591853764 7.430000e-51 211.0
32 TraesCS1D01G422000 chr7A 89.349 169 12 2 29 191 192987852 192987684 9.620000e-50 207.0
33 TraesCS1D01G422000 chr3B 93.750 112 7 0 1282 1393 708607153 708607042 4.540000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G422000 chr1D 477498704 477501354 2650 True 4896.0 4896 100.0000 1 2651 1 chr1D.!!$R2 2650
1 TraesCS1D01G422000 chr1B 665099116 665100695 1579 True 1912.0 1912 88.7060 250 1850 1 chr1B.!!$R1 1600
2 TraesCS1D01G422000 chr1A 573943063 573945299 2236 True 838.0 1635 92.1890 256 2628 3 chr1A.!!$R2 2372
3 TraesCS1D01G422000 chr1A 573930578 573931763 1185 True 749.5 1037 88.8395 403 1654 2 chr1A.!!$R1 1251

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
244 245 0.246086 TTTTAAGCGCCCCTGCATTG 59.754 50.0 2.29 0.0 37.32 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2147 2585 0.035458 GGCTTAGGGCGTCATGCTAT 59.965 55.0 0.0 0.0 45.43 2.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.209175 CTTATGTTATTTCCACTATGACTAGCC 57.791 37.037 0.00 0.00 0.00 3.93
27 28 6.808321 TGTTATTTCCACTATGACTAGCCT 57.192 37.500 0.00 0.00 0.00 4.58
28 29 7.195374 TGTTATTTCCACTATGACTAGCCTT 57.805 36.000 0.00 0.00 0.00 4.35
29 30 8.313944 TGTTATTTCCACTATGACTAGCCTTA 57.686 34.615 0.00 0.00 0.00 2.69
30 31 8.421784 TGTTATTTCCACTATGACTAGCCTTAG 58.578 37.037 0.00 0.00 0.00 2.18
31 32 8.422566 GTTATTTCCACTATGACTAGCCTTAGT 58.577 37.037 0.00 0.00 42.79 2.24
32 33 6.869206 TTTCCACTATGACTAGCCTTAGTT 57.131 37.500 2.38 0.00 40.21 2.24
33 34 7.966339 TTTCCACTATGACTAGCCTTAGTTA 57.034 36.000 2.38 0.00 40.21 2.24
34 35 6.956202 TCCACTATGACTAGCCTTAGTTAC 57.044 41.667 2.38 0.00 40.21 2.50
35 36 6.670617 TCCACTATGACTAGCCTTAGTTACT 58.329 40.000 2.38 0.00 40.21 2.24
36 37 6.546403 TCCACTATGACTAGCCTTAGTTACTG 59.454 42.308 2.38 0.00 40.21 2.74
37 38 6.321690 CCACTATGACTAGCCTTAGTTACTGT 59.678 42.308 2.38 0.00 40.21 3.55
38 39 7.501559 CCACTATGACTAGCCTTAGTTACTGTA 59.498 40.741 2.38 0.00 40.21 2.74
39 40 8.900781 CACTATGACTAGCCTTAGTTACTGTAA 58.099 37.037 2.38 0.00 40.21 2.41
40 41 8.901793 ACTATGACTAGCCTTAGTTACTGTAAC 58.098 37.037 20.27 20.27 40.21 2.50
41 42 7.713734 ATGACTAGCCTTAGTTACTGTAACA 57.286 36.000 27.12 13.79 40.21 2.41
42 43 7.713734 TGACTAGCCTTAGTTACTGTAACAT 57.286 36.000 27.12 16.67 40.21 2.71
43 44 7.769220 TGACTAGCCTTAGTTACTGTAACATC 58.231 38.462 27.12 13.59 40.21 3.06
44 45 7.395206 TGACTAGCCTTAGTTACTGTAACATCA 59.605 37.037 27.12 12.70 40.21 3.07
45 46 7.545489 ACTAGCCTTAGTTACTGTAACATCAC 58.455 38.462 27.12 14.85 41.07 3.06
46 47 5.408356 AGCCTTAGTTACTGTAACATCACG 58.592 41.667 27.12 14.01 41.07 4.35
47 48 4.032558 GCCTTAGTTACTGTAACATCACGC 59.967 45.833 27.12 18.48 41.07 5.34
48 49 5.165676 CCTTAGTTACTGTAACATCACGCA 58.834 41.667 27.12 6.80 41.07 5.24
49 50 5.810587 CCTTAGTTACTGTAACATCACGCAT 59.189 40.000 27.12 10.64 41.07 4.73
50 51 6.976349 CCTTAGTTACTGTAACATCACGCATA 59.024 38.462 27.12 9.79 41.07 3.14
51 52 7.652105 CCTTAGTTACTGTAACATCACGCATAT 59.348 37.037 27.12 9.43 41.07 1.78
52 53 8.570096 TTAGTTACTGTAACATCACGCATATC 57.430 34.615 27.12 1.55 41.07 1.63
53 54 6.569780 AGTTACTGTAACATCACGCATATCA 58.430 36.000 27.12 0.00 41.07 2.15
54 55 7.039270 AGTTACTGTAACATCACGCATATCAA 58.961 34.615 27.12 0.00 41.07 2.57
55 56 5.973651 ACTGTAACATCACGCATATCAAG 57.026 39.130 0.00 0.00 0.00 3.02
56 57 5.660460 ACTGTAACATCACGCATATCAAGA 58.340 37.500 0.00 0.00 0.00 3.02
57 58 6.106003 ACTGTAACATCACGCATATCAAGAA 58.894 36.000 0.00 0.00 0.00 2.52
58 59 6.593770 ACTGTAACATCACGCATATCAAGAAA 59.406 34.615 0.00 0.00 0.00 2.52
59 60 7.119116 ACTGTAACATCACGCATATCAAGAAAA 59.881 33.333 0.00 0.00 0.00 2.29
60 61 7.811653 TGTAACATCACGCATATCAAGAAAAA 58.188 30.769 0.00 0.00 0.00 1.94
86 87 7.792374 TGAGTCCTAATAAATGAAGTGATGC 57.208 36.000 0.00 0.00 0.00 3.91
87 88 7.337938 TGAGTCCTAATAAATGAAGTGATGCA 58.662 34.615 0.00 0.00 0.00 3.96
88 89 7.994911 TGAGTCCTAATAAATGAAGTGATGCAT 59.005 33.333 0.00 0.00 0.00 3.96
89 90 8.162878 AGTCCTAATAAATGAAGTGATGCATG 57.837 34.615 2.46 0.00 0.00 4.06
90 91 7.994911 AGTCCTAATAAATGAAGTGATGCATGA 59.005 33.333 2.46 0.00 0.00 3.07
91 92 8.072567 GTCCTAATAAATGAAGTGATGCATGAC 58.927 37.037 8.39 8.39 0.00 3.06
92 93 7.041848 TCCTAATAAATGAAGTGATGCATGACG 60.042 37.037 10.76 0.00 0.00 4.35
93 94 2.838386 AATGAAGTGATGCATGACGC 57.162 45.000 10.76 7.82 42.89 5.19
119 120 7.062749 ACATATATGTTACTACCCACTGTGG 57.937 40.000 20.01 20.01 37.90 4.17
120 121 6.842280 ACATATATGTTACTACCCACTGTGGA 59.158 38.462 27.94 8.24 37.45 4.02
121 122 7.346175 ACATATATGTTACTACCCACTGTGGAA 59.654 37.037 27.94 14.18 37.45 3.53
122 123 4.986054 ATGTTACTACCCACTGTGGAAA 57.014 40.909 27.94 13.83 40.96 3.13
123 124 4.986054 TGTTACTACCCACTGTGGAAAT 57.014 40.909 27.94 14.77 40.96 2.17
124 125 4.647611 TGTTACTACCCACTGTGGAAATG 58.352 43.478 27.94 13.36 40.96 2.32
125 126 2.879103 ACTACCCACTGTGGAAATGG 57.121 50.000 27.94 16.05 40.96 3.16
126 127 2.062636 ACTACCCACTGTGGAAATGGT 58.937 47.619 27.94 17.93 40.96 3.55
127 128 3.253220 ACTACCCACTGTGGAAATGGTA 58.747 45.455 27.94 18.08 40.96 3.25
128 129 3.653836 ACTACCCACTGTGGAAATGGTAA 59.346 43.478 27.94 5.56 40.96 2.85
129 130 3.825908 ACCCACTGTGGAAATGGTAAT 57.174 42.857 27.94 0.00 40.96 1.89
130 131 4.938575 ACCCACTGTGGAAATGGTAATA 57.061 40.909 27.94 0.00 40.96 0.98
131 132 5.466127 ACCCACTGTGGAAATGGTAATAT 57.534 39.130 27.94 0.00 40.96 1.28
132 133 6.584471 ACCCACTGTGGAAATGGTAATATA 57.416 37.500 27.94 0.00 40.96 0.86
133 134 6.601332 ACCCACTGTGGAAATGGTAATATAG 58.399 40.000 27.94 8.26 40.96 1.31
134 135 6.388689 ACCCACTGTGGAAATGGTAATATAGA 59.611 38.462 27.94 0.00 40.96 1.98
135 136 6.710744 CCCACTGTGGAAATGGTAATATAGAC 59.289 42.308 27.94 0.00 40.96 2.59
136 137 7.420214 CCCACTGTGGAAATGGTAATATAGACT 60.420 40.741 27.94 0.00 40.96 3.24
137 138 8.647796 CCACTGTGGAAATGGTAATATAGACTA 58.352 37.037 22.33 0.00 40.96 2.59
138 139 9.698309 CACTGTGGAAATGGTAATATAGACTAG 57.302 37.037 0.00 0.00 0.00 2.57
139 140 9.435570 ACTGTGGAAATGGTAATATAGACTAGT 57.564 33.333 0.00 0.00 0.00 2.57
171 172 8.767478 TGCATGTTACTACTTTAAGTTACTCC 57.233 34.615 1.94 0.00 31.82 3.85
172 173 7.820872 TGCATGTTACTACTTTAAGTTACTCCC 59.179 37.037 1.94 0.00 31.82 4.30
173 174 7.279536 GCATGTTACTACTTTAAGTTACTCCCC 59.720 40.741 1.94 0.00 31.82 4.81
174 175 7.854166 TGTTACTACTTTAAGTTACTCCCCA 57.146 36.000 1.94 0.00 31.82 4.96
175 176 7.670364 TGTTACTACTTTAAGTTACTCCCCAC 58.330 38.462 1.94 0.00 31.82 4.61
176 177 7.510343 TGTTACTACTTTAAGTTACTCCCCACT 59.490 37.037 1.94 0.00 31.82 4.00
177 178 6.356186 ACTACTTTAAGTTACTCCCCACTG 57.644 41.667 1.94 0.00 0.00 3.66
178 179 5.842874 ACTACTTTAAGTTACTCCCCACTGT 59.157 40.000 1.94 0.00 0.00 3.55
179 180 4.969484 ACTTTAAGTTACTCCCCACTGTG 58.031 43.478 0.00 0.00 0.00 3.66
180 181 4.657039 ACTTTAAGTTACTCCCCACTGTGA 59.343 41.667 9.86 0.00 0.00 3.58
181 182 4.612264 TTAAGTTACTCCCCACTGTGAC 57.388 45.455 9.86 0.00 0.00 3.67
182 183 2.400467 AGTTACTCCCCACTGTGACT 57.600 50.000 9.86 0.00 0.00 3.41
183 184 3.537795 AGTTACTCCCCACTGTGACTA 57.462 47.619 9.86 0.00 32.48 2.59
184 185 3.432378 AGTTACTCCCCACTGTGACTAG 58.568 50.000 9.86 5.62 32.48 2.57
185 186 3.163467 GTTACTCCCCACTGTGACTAGT 58.837 50.000 9.86 10.99 0.00 2.57
186 187 1.926108 ACTCCCCACTGTGACTAGTC 58.074 55.000 16.32 16.32 0.00 2.59
187 188 1.429687 ACTCCCCACTGTGACTAGTCT 59.570 52.381 23.01 0.19 0.00 3.24
188 189 2.648304 ACTCCCCACTGTGACTAGTCTA 59.352 50.000 23.01 11.56 0.00 2.59
189 190 3.075582 ACTCCCCACTGTGACTAGTCTAA 59.924 47.826 23.01 10.61 0.00 2.10
190 191 3.428532 TCCCCACTGTGACTAGTCTAAC 58.571 50.000 23.01 14.37 0.00 2.34
191 192 2.163815 CCCCACTGTGACTAGTCTAACG 59.836 54.545 23.01 12.24 0.00 3.18
192 193 3.079578 CCCACTGTGACTAGTCTAACGA 58.920 50.000 23.01 0.00 0.00 3.85
193 194 3.119919 CCCACTGTGACTAGTCTAACGAC 60.120 52.174 23.01 13.00 40.54 4.34
204 205 2.480845 GTCTAACGACTTGGTGCTTGT 58.519 47.619 0.00 0.00 37.19 3.16
205 206 2.221055 GTCTAACGACTTGGTGCTTGTG 59.779 50.000 0.00 0.00 37.19 3.33
206 207 0.941542 TAACGACTTGGTGCTTGTGC 59.058 50.000 0.00 0.00 40.20 4.57
215 216 2.959372 TGCTTGTGCATGCAGCTC 59.041 55.556 23.41 10.51 45.31 4.09
216 217 1.899534 TGCTTGTGCATGCAGCTCA 60.900 52.632 23.41 13.41 45.31 4.26
222 223 3.497297 TGTGCATGCAGCTCAATTTAG 57.503 42.857 23.41 0.00 43.16 1.85
223 224 2.164827 TGTGCATGCAGCTCAATTTAGG 59.835 45.455 23.41 0.00 43.16 2.69
224 225 2.424601 GTGCATGCAGCTCAATTTAGGA 59.575 45.455 23.41 0.00 45.94 2.94
225 226 3.067742 GTGCATGCAGCTCAATTTAGGAT 59.932 43.478 23.41 0.00 45.94 3.24
226 227 3.702548 TGCATGCAGCTCAATTTAGGATT 59.297 39.130 18.46 0.00 45.94 3.01
227 228 4.160814 TGCATGCAGCTCAATTTAGGATTT 59.839 37.500 18.46 0.00 45.94 2.17
228 229 5.114081 GCATGCAGCTCAATTTAGGATTTT 58.886 37.500 14.21 0.00 41.15 1.82
229 230 6.127394 TGCATGCAGCTCAATTTAGGATTTTA 60.127 34.615 18.46 0.00 45.94 1.52
230 231 6.757947 GCATGCAGCTCAATTTAGGATTTTAA 59.242 34.615 14.21 0.00 41.15 1.52
231 232 7.042925 GCATGCAGCTCAATTTAGGATTTTAAG 60.043 37.037 14.21 0.00 41.15 1.85
232 233 6.332630 TGCAGCTCAATTTAGGATTTTAAGC 58.667 36.000 0.00 0.00 0.00 3.09
233 234 5.456822 GCAGCTCAATTTAGGATTTTAAGCG 59.543 40.000 0.00 0.00 32.66 4.68
234 235 5.456822 CAGCTCAATTTAGGATTTTAAGCGC 59.543 40.000 0.00 0.00 32.66 5.92
235 236 4.740205 GCTCAATTTAGGATTTTAAGCGCC 59.260 41.667 2.29 0.00 0.00 6.53
236 237 5.257082 TCAATTTAGGATTTTAAGCGCCC 57.743 39.130 2.29 0.00 0.00 6.13
237 238 4.098807 TCAATTTAGGATTTTAAGCGCCCC 59.901 41.667 2.29 0.00 0.00 5.80
238 239 3.375647 TTTAGGATTTTAAGCGCCCCT 57.624 42.857 2.29 2.10 0.00 4.79
239 240 2.341846 TAGGATTTTAAGCGCCCCTG 57.658 50.000 2.29 0.00 0.00 4.45
240 241 1.037579 AGGATTTTAAGCGCCCCTGC 61.038 55.000 2.29 0.00 0.00 4.85
241 242 1.319614 GGATTTTAAGCGCCCCTGCA 61.320 55.000 2.29 0.00 37.32 4.41
242 243 0.746659 GATTTTAAGCGCCCCTGCAT 59.253 50.000 2.29 0.00 37.32 3.96
243 244 1.136891 GATTTTAAGCGCCCCTGCATT 59.863 47.619 2.29 0.00 37.32 3.56
244 245 0.246086 TTTTAAGCGCCCCTGCATTG 59.754 50.000 2.29 0.00 37.32 2.82
245 246 1.603236 TTTAAGCGCCCCTGCATTGG 61.603 55.000 2.29 0.00 37.32 3.16
246 247 2.491770 TTAAGCGCCCCTGCATTGGA 62.492 55.000 2.29 0.00 37.32 3.53
247 248 2.891941 TAAGCGCCCCTGCATTGGAG 62.892 60.000 2.29 0.00 37.32 3.86
397 411 3.741476 CGCCAAGCAAGCTCCACC 61.741 66.667 0.00 0.00 0.00 4.61
405 419 4.379243 AAGCTCCACCGGTCAGCG 62.379 66.667 23.41 7.89 38.26 5.18
463 481 2.607038 GCAACGGAATCTTCAACCAACC 60.607 50.000 0.00 0.00 0.00 3.77
516 537 1.810030 GGCCGCCTTCTAGACGTTG 60.810 63.158 0.71 0.00 0.00 4.10
552 578 5.595542 ACATGCTGCATTTACCAGTGATATT 59.404 36.000 13.38 0.00 32.93 1.28
553 579 6.772233 ACATGCTGCATTTACCAGTGATATTA 59.228 34.615 13.38 0.00 32.93 0.98
556 582 6.088824 GCTGCATTTACCAGTGATATTATGC 58.911 40.000 5.54 5.54 38.04 3.14
557 583 6.072286 GCTGCATTTACCAGTGATATTATGCT 60.072 38.462 11.41 0.00 38.30 3.79
558 584 7.205737 TGCATTTACCAGTGATATTATGCTG 57.794 36.000 11.41 0.00 38.30 4.41
562 588 3.144657 CCAGTGATATTATGCTGGCCA 57.855 47.619 4.71 4.71 41.46 5.36
563 589 2.816087 CCAGTGATATTATGCTGGCCAC 59.184 50.000 0.00 0.00 41.46 5.01
564 590 2.816087 CAGTGATATTATGCTGGCCACC 59.184 50.000 0.00 0.00 0.00 4.61
565 591 2.442878 AGTGATATTATGCTGGCCACCA 59.557 45.455 0.00 0.52 0.00 4.17
566 592 2.554032 GTGATATTATGCTGGCCACCAC 59.446 50.000 0.00 0.00 0.00 4.16
852 906 0.404040 TCCATCCACCACCAAACTCC 59.596 55.000 0.00 0.00 0.00 3.85
908 962 1.267806 CAAAGCTGCACCAAACTCGAT 59.732 47.619 1.02 0.00 0.00 3.59
909 963 1.160137 AAGCTGCACCAAACTCGATC 58.840 50.000 1.02 0.00 0.00 3.69
910 964 1.016130 AGCTGCACCAAACTCGATCG 61.016 55.000 9.36 9.36 0.00 3.69
911 965 1.014044 GCTGCACCAAACTCGATCGA 61.014 55.000 18.32 18.32 0.00 3.59
912 966 1.645034 CTGCACCAAACTCGATCGAT 58.355 50.000 19.78 0.94 0.00 3.59
980 1035 4.306471 CGCCGAGCAAACACGCAA 62.306 61.111 0.00 0.00 0.00 4.85
1536 1593 2.182284 CAACCGGCATCCGTACGA 59.818 61.111 18.76 3.10 46.80 3.43
1538 1595 1.153706 AACCGGCATCCGTACGAAG 60.154 57.895 18.76 7.02 46.80 3.79
1552 1613 1.545841 ACGAAGGCTGGGATTTTTCC 58.454 50.000 0.00 0.00 0.00 3.13
1595 1657 3.427909 GGTGCATGTACCACATCATGTTG 60.428 47.826 26.17 2.12 42.09 3.33
1596 1658 3.439825 GTGCATGTACCACATCATGTTGA 59.560 43.478 10.74 0.00 42.09 3.18
1597 1659 4.096833 GTGCATGTACCACATCATGTTGAT 59.903 41.667 10.74 0.00 42.09 2.57
1598 1660 4.336153 TGCATGTACCACATCATGTTGATC 59.664 41.667 10.74 0.00 42.09 2.92
1628 1690 1.710013 TCGATGTGAAGCGAGGTTTC 58.290 50.000 0.00 0.00 32.13 2.78
1638 1700 2.966050 AGCGAGGTTTCTCAAGATGAC 58.034 47.619 0.00 0.00 39.95 3.06
1651 1713 1.388547 AGATGACCGTCTGCTCTCTC 58.611 55.000 0.00 0.00 0.00 3.20
1652 1714 1.064758 AGATGACCGTCTGCTCTCTCT 60.065 52.381 0.00 0.00 0.00 3.10
1653 1715 1.333619 GATGACCGTCTGCTCTCTCTC 59.666 57.143 0.00 0.00 0.00 3.20
1654 1716 0.326595 TGACCGTCTGCTCTCTCTCT 59.673 55.000 0.00 0.00 0.00 3.10
1655 1717 1.014352 GACCGTCTGCTCTCTCTCTC 58.986 60.000 0.00 0.00 0.00 3.20
1656 1718 0.618458 ACCGTCTGCTCTCTCTCTCT 59.382 55.000 0.00 0.00 0.00 3.10
1657 1719 1.299541 CCGTCTGCTCTCTCTCTCTC 58.700 60.000 0.00 0.00 0.00 3.20
1658 1720 1.134401 CCGTCTGCTCTCTCTCTCTCT 60.134 57.143 0.00 0.00 0.00 3.10
1659 1721 2.205074 CGTCTGCTCTCTCTCTCTCTC 58.795 57.143 0.00 0.00 0.00 3.20
1660 1722 2.159043 CGTCTGCTCTCTCTCTCTCTCT 60.159 54.545 0.00 0.00 0.00 3.10
1661 1723 3.462021 GTCTGCTCTCTCTCTCTCTCTC 58.538 54.545 0.00 0.00 0.00 3.20
1662 1724 3.133721 GTCTGCTCTCTCTCTCTCTCTCT 59.866 52.174 0.00 0.00 0.00 3.10
1663 1725 3.386078 TCTGCTCTCTCTCTCTCTCTCTC 59.614 52.174 0.00 0.00 0.00 3.20
1664 1726 3.378512 TGCTCTCTCTCTCTCTCTCTCT 58.621 50.000 0.00 0.00 0.00 3.10
1665 1727 3.386078 TGCTCTCTCTCTCTCTCTCTCTC 59.614 52.174 0.00 0.00 0.00 3.20
1666 1728 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
1667 1729 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
1725 2163 2.936928 CAGTGGCACTGCTCATGAA 58.063 52.632 32.39 0.00 39.62 2.57
1801 2239 6.644592 GCTGTTCAAACAATTTGGTATGCTTA 59.355 34.615 0.78 0.00 40.98 3.09
1879 2317 2.897969 AGTCGAATGGTCCAACTACAGT 59.102 45.455 0.00 0.00 0.00 3.55
1880 2318 3.056749 AGTCGAATGGTCCAACTACAGTC 60.057 47.826 0.00 0.00 0.00 3.51
1883 2321 4.157289 TCGAATGGTCCAACTACAGTCTAC 59.843 45.833 0.00 0.00 0.00 2.59
1884 2322 4.082408 CGAATGGTCCAACTACAGTCTACA 60.082 45.833 0.00 0.00 0.00 2.74
1885 2323 5.566032 CGAATGGTCCAACTACAGTCTACAA 60.566 44.000 0.00 0.00 0.00 2.41
1886 2324 4.866508 TGGTCCAACTACAGTCTACAAG 57.133 45.455 0.00 0.00 0.00 3.16
1896 2334 8.470805 CAACTACAGTCTACAAGATAACAGGAT 58.529 37.037 0.00 0.00 0.00 3.24
1899 2337 5.721960 ACAGTCTACAAGATAACAGGATGGT 59.278 40.000 0.00 0.00 43.62 3.55
1904 2342 4.579869 ACAAGATAACAGGATGGTGTGTC 58.420 43.478 0.00 0.00 35.42 3.67
1905 2343 4.287067 ACAAGATAACAGGATGGTGTGTCT 59.713 41.667 0.00 0.00 35.42 3.41
1906 2344 5.221925 ACAAGATAACAGGATGGTGTGTCTT 60.222 40.000 0.00 0.00 35.42 3.01
1907 2345 5.091261 AGATAACAGGATGGTGTGTCTTC 57.909 43.478 0.00 0.00 35.42 2.87
1935 2373 2.311124 AAAGCTCGGTATTCTTCCCG 57.689 50.000 0.00 0.00 45.55 5.14
1944 2382 3.404899 GGTATTCTTCCCGTGTGTTTGA 58.595 45.455 0.00 0.00 0.00 2.69
1945 2383 3.187842 GGTATTCTTCCCGTGTGTTTGAC 59.812 47.826 0.00 0.00 0.00 3.18
1946 2384 2.404923 TTCTTCCCGTGTGTTTGACA 57.595 45.000 0.00 0.00 0.00 3.58
1947 2385 2.404923 TCTTCCCGTGTGTTTGACAA 57.595 45.000 0.00 0.00 35.91 3.18
1948 2386 2.712709 TCTTCCCGTGTGTTTGACAAA 58.287 42.857 0.00 0.00 35.91 2.83
1949 2387 3.082548 TCTTCCCGTGTGTTTGACAAAA 58.917 40.909 1.27 0.00 35.91 2.44
1950 2388 3.506455 TCTTCCCGTGTGTTTGACAAAAA 59.494 39.130 1.27 0.00 35.91 1.94
1951 2389 3.219052 TCCCGTGTGTTTGACAAAAAC 57.781 42.857 13.44 13.44 35.91 2.43
1952 2390 1.914700 CCCGTGTGTTTGACAAAAACG 59.085 47.619 14.98 16.81 35.91 3.60
1953 2391 2.586900 CCGTGTGTTTGACAAAAACGT 58.413 42.857 21.10 0.00 35.91 3.99
1954 2392 2.339988 CCGTGTGTTTGACAAAAACGTG 59.660 45.455 21.10 14.30 35.91 4.49
1955 2393 3.227147 CGTGTGTTTGACAAAAACGTGA 58.773 40.909 14.98 0.00 35.91 4.35
1956 2394 3.664486 CGTGTGTTTGACAAAAACGTGAA 59.336 39.130 14.98 0.00 35.91 3.18
1957 2395 4.146616 CGTGTGTTTGACAAAAACGTGAAA 59.853 37.500 14.98 0.00 35.91 2.69
1958 2396 5.331607 CGTGTGTTTGACAAAAACGTGAAAA 60.332 36.000 14.98 0.00 35.91 2.29
1959 2397 6.585852 GTGTGTTTGACAAAAACGTGAAAAT 58.414 32.000 14.98 0.00 35.91 1.82
1960 2398 6.514665 GTGTGTTTGACAAAAACGTGAAAATG 59.485 34.615 14.98 0.00 35.91 2.32
1961 2399 6.420903 TGTGTTTGACAAAAACGTGAAAATGA 59.579 30.769 14.98 0.00 33.05 2.57
1962 2400 7.042725 TGTGTTTGACAAAAACGTGAAAATGAA 60.043 29.630 14.98 0.00 33.05 2.57
1963 2401 7.265286 GTGTTTGACAAAAACGTGAAAATGAAC 59.735 33.333 5.49 0.00 33.05 3.18
1964 2402 7.042725 TGTTTGACAAAAACGTGAAAATGAACA 60.043 29.630 1.27 0.00 33.05 3.18
1965 2403 7.408132 TTGACAAAAACGTGAAAATGAACAA 57.592 28.000 0.00 0.00 0.00 2.83
1966 2404 7.408132 TGACAAAAACGTGAAAATGAACAAA 57.592 28.000 0.00 0.00 0.00 2.83
1967 2405 7.851508 TGACAAAAACGTGAAAATGAACAAAA 58.148 26.923 0.00 0.00 0.00 2.44
1968 2406 7.794349 TGACAAAAACGTGAAAATGAACAAAAC 59.206 29.630 0.00 0.00 0.00 2.43
1969 2407 7.856556 ACAAAAACGTGAAAATGAACAAAACT 58.143 26.923 0.00 0.00 0.00 2.66
1970 2408 7.796197 ACAAAAACGTGAAAATGAACAAAACTG 59.204 29.630 0.00 0.00 0.00 3.16
1971 2409 7.644986 AAAACGTGAAAATGAACAAAACTGA 57.355 28.000 0.00 0.00 0.00 3.41
1972 2410 6.626199 AACGTGAAAATGAACAAAACTGAC 57.374 33.333 0.00 0.00 0.00 3.51
1973 2411 5.099575 ACGTGAAAATGAACAAAACTGACC 58.900 37.500 0.00 0.00 0.00 4.02
1974 2412 4.502645 CGTGAAAATGAACAAAACTGACCC 59.497 41.667 0.00 0.00 0.00 4.46
1975 2413 5.660460 GTGAAAATGAACAAAACTGACCCT 58.340 37.500 0.00 0.00 0.00 4.34
1976 2414 6.106003 GTGAAAATGAACAAAACTGACCCTT 58.894 36.000 0.00 0.00 0.00 3.95
1977 2415 7.262048 GTGAAAATGAACAAAACTGACCCTTA 58.738 34.615 0.00 0.00 0.00 2.69
1978 2416 7.926018 GTGAAAATGAACAAAACTGACCCTTAT 59.074 33.333 0.00 0.00 0.00 1.73
1979 2417 8.141268 TGAAAATGAACAAAACTGACCCTTATC 58.859 33.333 0.00 0.00 0.00 1.75
1980 2418 7.839680 AAATGAACAAAACTGACCCTTATCT 57.160 32.000 0.00 0.00 0.00 1.98
1981 2419 6.824305 ATGAACAAAACTGACCCTTATCTG 57.176 37.500 0.00 0.00 0.00 2.90
1982 2420 5.935945 TGAACAAAACTGACCCTTATCTGA 58.064 37.500 0.00 0.00 0.00 3.27
1983 2421 6.361433 TGAACAAAACTGACCCTTATCTGAA 58.639 36.000 0.00 0.00 0.00 3.02
1984 2422 6.831353 TGAACAAAACTGACCCTTATCTGAAA 59.169 34.615 0.00 0.00 0.00 2.69
1985 2423 6.635030 ACAAAACTGACCCTTATCTGAAAC 57.365 37.500 0.00 0.00 0.00 2.78
1986 2424 6.365520 ACAAAACTGACCCTTATCTGAAACT 58.634 36.000 0.00 0.00 0.00 2.66
1987 2425 6.833933 ACAAAACTGACCCTTATCTGAAACTT 59.166 34.615 0.00 0.00 0.00 2.66
1988 2426 7.013369 ACAAAACTGACCCTTATCTGAAACTTC 59.987 37.037 0.00 0.00 0.00 3.01
1989 2427 5.825593 ACTGACCCTTATCTGAAACTTCA 57.174 39.130 0.00 0.00 35.57 3.02
1990 2428 6.187727 ACTGACCCTTATCTGAAACTTCAA 57.812 37.500 0.00 0.00 36.64 2.69
1991 2429 5.998363 ACTGACCCTTATCTGAAACTTCAAC 59.002 40.000 0.00 0.00 36.64 3.18
1992 2430 5.935945 TGACCCTTATCTGAAACTTCAACA 58.064 37.500 0.00 0.00 36.64 3.33
1993 2431 5.763204 TGACCCTTATCTGAAACTTCAACAC 59.237 40.000 0.00 0.00 36.64 3.32
1994 2432 5.690865 ACCCTTATCTGAAACTTCAACACA 58.309 37.500 0.00 0.00 36.64 3.72
1995 2433 6.126409 ACCCTTATCTGAAACTTCAACACAA 58.874 36.000 0.00 0.00 36.64 3.33
1996 2434 6.605594 ACCCTTATCTGAAACTTCAACACAAA 59.394 34.615 0.00 0.00 36.64 2.83
1997 2435 7.123547 ACCCTTATCTGAAACTTCAACACAAAA 59.876 33.333 0.00 0.00 36.64 2.44
1998 2436 8.143835 CCCTTATCTGAAACTTCAACACAAAAT 58.856 33.333 0.00 0.00 36.64 1.82
1999 2437 8.971321 CCTTATCTGAAACTTCAACACAAAATG 58.029 33.333 0.00 0.00 36.64 2.32
2000 2438 9.734620 CTTATCTGAAACTTCAACACAAAATGA 57.265 29.630 0.00 0.00 36.64 2.57
2001 2439 7.992180 ATCTGAAACTTCAACACAAAATGAC 57.008 32.000 0.00 0.00 36.64 3.06
2002 2440 7.156876 TCTGAAACTTCAACACAAAATGACT 57.843 32.000 0.00 0.00 36.64 3.41
2003 2441 7.250569 TCTGAAACTTCAACACAAAATGACTC 58.749 34.615 0.00 0.00 36.64 3.36
2004 2442 6.329496 TGAAACTTCAACACAAAATGACTCC 58.671 36.000 0.00 0.00 33.55 3.85
2005 2443 5.913137 AACTTCAACACAAAATGACTCCA 57.087 34.783 0.00 0.00 0.00 3.86
2006 2444 5.913137 ACTTCAACACAAAATGACTCCAA 57.087 34.783 0.00 0.00 0.00 3.53
2007 2445 6.469782 ACTTCAACACAAAATGACTCCAAT 57.530 33.333 0.00 0.00 0.00 3.16
2008 2446 6.507023 ACTTCAACACAAAATGACTCCAATC 58.493 36.000 0.00 0.00 0.00 2.67
2009 2447 6.322201 ACTTCAACACAAAATGACTCCAATCT 59.678 34.615 0.00 0.00 0.00 2.40
2010 2448 6.075762 TCAACACAAAATGACTCCAATCTG 57.924 37.500 0.00 0.00 0.00 2.90
2011 2449 5.827267 TCAACACAAAATGACTCCAATCTGA 59.173 36.000 0.00 0.00 0.00 3.27
2012 2450 6.320926 TCAACACAAAATGACTCCAATCTGAA 59.679 34.615 0.00 0.00 0.00 3.02
2013 2451 6.713762 ACACAAAATGACTCCAATCTGAAA 57.286 33.333 0.00 0.00 0.00 2.69
2014 2452 7.111247 ACACAAAATGACTCCAATCTGAAAA 57.889 32.000 0.00 0.00 0.00 2.29
2015 2453 7.729116 ACACAAAATGACTCCAATCTGAAAAT 58.271 30.769 0.00 0.00 0.00 1.82
2016 2454 8.859090 ACACAAAATGACTCCAATCTGAAAATA 58.141 29.630 0.00 0.00 0.00 1.40
2017 2455 9.865321 CACAAAATGACTCCAATCTGAAAATAT 57.135 29.630 0.00 0.00 0.00 1.28
2024 2462 9.443323 TGACTCCAATCTGAAAATATTTTACGA 57.557 29.630 13.34 12.38 0.00 3.43
2031 2469 8.871686 ATCTGAAAATATTTTACGAAATGGCC 57.128 30.769 13.34 0.00 36.22 5.36
2032 2470 7.262048 TCTGAAAATATTTTACGAAATGGCCC 58.738 34.615 13.34 0.00 36.22 5.80
2033 2471 7.123547 TCTGAAAATATTTTACGAAATGGCCCT 59.876 33.333 13.34 0.00 36.22 5.19
2034 2472 7.262048 TGAAAATATTTTACGAAATGGCCCTC 58.738 34.615 13.34 0.00 36.22 4.30
2035 2473 7.123547 TGAAAATATTTTACGAAATGGCCCTCT 59.876 33.333 13.34 0.00 36.22 3.69
2036 2474 7.418337 AAATATTTTACGAAATGGCCCTCTT 57.582 32.000 0.00 0.00 36.22 2.85
2037 2475 7.418337 AATATTTTACGAAATGGCCCTCTTT 57.582 32.000 0.00 0.00 36.22 2.52
2038 2476 5.738619 ATTTTACGAAATGGCCCTCTTTT 57.261 34.783 0.00 0.00 34.26 2.27
2039 2477 4.513198 TTTACGAAATGGCCCTCTTTTG 57.487 40.909 0.00 4.28 0.00 2.44
2040 2478 0.603065 ACGAAATGGCCCTCTTTTGC 59.397 50.000 0.00 0.00 0.00 3.68
2041 2479 0.602562 CGAAATGGCCCTCTTTTGCA 59.397 50.000 0.00 0.00 0.00 4.08
2042 2480 1.205417 CGAAATGGCCCTCTTTTGCAT 59.795 47.619 0.00 0.00 0.00 3.96
2043 2481 2.624636 GAAATGGCCCTCTTTTGCATG 58.375 47.619 0.00 0.00 0.00 4.06
2044 2482 1.941377 AATGGCCCTCTTTTGCATGA 58.059 45.000 0.00 0.00 0.00 3.07
2045 2483 1.188863 ATGGCCCTCTTTTGCATGAC 58.811 50.000 0.00 0.00 0.00 3.06
2046 2484 1.243342 TGGCCCTCTTTTGCATGACG 61.243 55.000 0.00 0.00 0.00 4.35
2047 2485 1.153958 GCCCTCTTTTGCATGACGC 60.154 57.895 0.00 0.00 42.89 5.19
2048 2486 1.508088 CCCTCTTTTGCATGACGCC 59.492 57.895 0.00 0.00 41.33 5.68
2049 2487 1.508088 CCTCTTTTGCATGACGCCC 59.492 57.895 0.00 0.00 41.33 6.13
2050 2488 1.135315 CTCTTTTGCATGACGCCCG 59.865 57.895 0.00 0.00 41.33 6.13
2051 2489 2.504681 CTTTTGCATGACGCCCGC 60.505 61.111 0.00 0.00 41.33 6.13
2052 2490 4.397090 TTTTGCATGACGCCCGCG 62.397 61.111 7.69 7.69 46.03 6.46
2070 2508 4.552365 GCTAGGGCGCCATGCTGA 62.552 66.667 30.85 4.61 45.43 4.26
2071 2509 2.190313 CTAGGGCGCCATGCTGAA 59.810 61.111 30.85 4.15 45.43 3.02
2072 2510 1.890979 CTAGGGCGCCATGCTGAAG 60.891 63.158 30.85 11.59 45.43 3.02
2073 2511 2.315781 CTAGGGCGCCATGCTGAAGA 62.316 60.000 30.85 2.36 45.43 2.87
2074 2512 2.315781 TAGGGCGCCATGCTGAAGAG 62.316 60.000 30.85 0.00 45.43 2.85
2075 2513 3.885521 GGCGCCATGCTGAAGAGC 61.886 66.667 24.80 0.00 46.44 4.09
2083 2521 3.096791 GCTGAAGAGCATGACGCC 58.903 61.111 0.00 0.00 45.46 5.68
2084 2522 2.467826 GCTGAAGAGCATGACGCCC 61.468 63.158 0.00 0.00 45.46 6.13
2085 2523 1.817099 CTGAAGAGCATGACGCCCC 60.817 63.158 0.00 0.00 44.04 5.80
2086 2524 2.892425 GAAGAGCATGACGCCCCG 60.892 66.667 0.00 0.00 44.04 5.73
2087 2525 4.473520 AAGAGCATGACGCCCCGG 62.474 66.667 0.00 0.00 44.04 5.73
2104 2542 4.151582 GGCTAAGGCGCCGTGGTA 62.152 66.667 25.89 12.97 40.79 3.25
2105 2543 2.585247 GCTAAGGCGCCGTGGTAG 60.585 66.667 25.89 21.80 0.00 3.18
2106 2544 2.585247 CTAAGGCGCCGTGGTAGC 60.585 66.667 25.89 0.00 0.00 3.58
2113 2551 2.125673 GCCGTGGTAGCGACATGT 60.126 61.111 0.00 0.00 0.00 3.21
2114 2552 1.140161 GCCGTGGTAGCGACATGTA 59.860 57.895 0.00 0.00 0.00 2.29
2115 2553 0.870307 GCCGTGGTAGCGACATGTAG 60.870 60.000 0.00 0.00 0.00 2.74
2116 2554 0.870307 CCGTGGTAGCGACATGTAGC 60.870 60.000 21.79 21.79 0.00 3.58
2117 2555 0.179148 CGTGGTAGCGACATGTAGCA 60.179 55.000 29.04 13.25 33.49 3.49
2118 2556 1.536072 CGTGGTAGCGACATGTAGCAT 60.536 52.381 29.04 17.64 33.49 3.79
2119 2557 1.860950 GTGGTAGCGACATGTAGCATG 59.139 52.381 29.04 7.48 33.49 4.06
2120 2558 1.754226 TGGTAGCGACATGTAGCATGA 59.246 47.619 29.04 13.58 33.49 3.07
2121 2559 2.128035 GGTAGCGACATGTAGCATGAC 58.872 52.381 29.04 22.21 33.49 3.06
2122 2560 1.781429 GTAGCGACATGTAGCATGACG 59.219 52.381 29.04 22.18 39.43 4.35
2124 2562 1.927210 CGACATGTAGCATGACGCC 59.073 57.895 17.22 4.27 44.04 5.68
2125 2563 1.490693 CGACATGTAGCATGACGCCC 61.491 60.000 17.22 2.43 44.04 6.13
2126 2564 1.153168 ACATGTAGCATGACGCCCC 60.153 57.895 15.03 0.00 44.04 5.80
2127 2565 2.108976 ATGTAGCATGACGCCCCG 59.891 61.111 0.00 0.00 44.04 5.73
2128 2566 3.460672 ATGTAGCATGACGCCCCGG 62.461 63.158 0.00 0.00 44.04 5.73
2129 2567 3.845259 GTAGCATGACGCCCCGGA 61.845 66.667 0.73 0.00 44.04 5.14
2130 2568 3.536917 TAGCATGACGCCCCGGAG 61.537 66.667 0.73 0.00 44.04 4.63
2132 2570 2.914756 TAGCATGACGCCCCGGAGTA 62.915 60.000 0.73 0.00 44.04 2.59
2133 2571 2.417516 CATGACGCCCCGGAGTAG 59.582 66.667 0.73 0.00 0.00 2.57
2134 2572 2.838225 ATGACGCCCCGGAGTAGG 60.838 66.667 0.73 0.00 0.00 3.18
2142 2580 4.609018 CCGGAGTAGGGCGCCATG 62.609 72.222 30.85 8.82 36.82 3.66
2159 2597 2.105984 TGCCAAATAGCATGACGCC 58.894 52.632 0.00 0.00 44.04 5.68
2160 2598 1.360192 GCCAAATAGCATGACGCCC 59.640 57.895 0.00 0.00 44.04 6.13
2161 2599 1.103398 GCCAAATAGCATGACGCCCT 61.103 55.000 0.00 0.00 44.04 5.19
2162 2600 1.813862 GCCAAATAGCATGACGCCCTA 60.814 52.381 0.00 0.00 44.04 3.53
2163 2601 2.571212 CCAAATAGCATGACGCCCTAA 58.429 47.619 0.00 0.00 44.04 2.69
2164 2602 2.549754 CCAAATAGCATGACGCCCTAAG 59.450 50.000 0.00 0.00 44.04 2.18
2165 2603 1.884235 AATAGCATGACGCCCTAAGC 58.116 50.000 0.00 0.00 44.04 3.09
2166 2604 0.035458 ATAGCATGACGCCCTAAGCC 59.965 55.000 0.00 0.00 44.04 4.35
2167 2605 2.363711 TAGCATGACGCCCTAAGCCG 62.364 60.000 0.00 0.00 44.04 5.52
2168 2606 2.588877 CATGACGCCCTAAGCCGG 60.589 66.667 0.00 0.00 38.78 6.13
2169 2607 2.762459 ATGACGCCCTAAGCCGGA 60.762 61.111 5.05 0.00 38.78 5.14
2170 2608 2.797278 ATGACGCCCTAAGCCGGAG 61.797 63.158 5.05 0.00 38.78 4.63
2171 2609 4.893601 GACGCCCTAAGCCGGAGC 62.894 72.222 5.05 0.00 38.78 4.70
2174 2612 4.893601 GCCCTAAGCCGGAGCGTC 62.894 72.222 5.05 0.00 46.67 5.19
2175 2613 3.458163 CCCTAAGCCGGAGCGTCA 61.458 66.667 5.05 0.00 46.67 4.35
2176 2614 2.797278 CCCTAAGCCGGAGCGTCAT 61.797 63.158 5.05 0.00 46.67 3.06
2177 2615 1.592669 CCTAAGCCGGAGCGTCATG 60.593 63.158 5.05 0.00 46.67 3.07
2178 2616 2.202878 TAAGCCGGAGCGTCATGC 60.203 61.111 5.05 0.00 46.67 4.06
2198 2636 3.883830 CTATCTAGCATGGCACCCTAG 57.116 52.381 14.07 14.07 0.00 3.02
2199 2637 0.689623 ATCTAGCATGGCACCCTAGC 59.310 55.000 14.99 4.51 0.00 3.42
2222 2660 3.512516 GCGTCATGCAGAAGGGGC 61.513 66.667 0.00 0.00 45.45 5.80
2223 2661 2.825836 CGTCATGCAGAAGGGGCC 60.826 66.667 0.00 0.00 0.00 5.80
2224 2662 2.356278 GTCATGCAGAAGGGGCCA 59.644 61.111 4.39 0.00 0.00 5.36
2225 2663 1.076485 GTCATGCAGAAGGGGCCAT 60.076 57.895 4.39 0.00 0.00 4.40
2226 2664 0.685458 GTCATGCAGAAGGGGCCATT 60.685 55.000 1.52 1.52 0.00 3.16
2227 2665 0.041535 TCATGCAGAAGGGGCCATTT 59.958 50.000 4.31 0.00 0.00 2.32
2228 2666 0.462789 CATGCAGAAGGGGCCATTTC 59.537 55.000 4.31 8.43 0.00 2.17
2229 2667 0.041535 ATGCAGAAGGGGCCATTTCA 59.958 50.000 18.54 11.79 0.00 2.69
2230 2668 0.041535 TGCAGAAGGGGCCATTTCAT 59.958 50.000 18.54 1.34 0.00 2.57
2231 2669 0.462789 GCAGAAGGGGCCATTTCATG 59.537 55.000 18.54 12.99 0.00 3.07
2232 2670 1.961435 GCAGAAGGGGCCATTTCATGA 60.961 52.381 18.54 0.00 0.00 3.07
2233 2671 2.459644 CAGAAGGGGCCATTTCATGAA 58.540 47.619 18.54 3.38 0.00 2.57
2234 2672 2.833338 CAGAAGGGGCCATTTCATGAAA 59.167 45.455 22.52 22.52 34.46 2.69
2235 2673 3.453353 CAGAAGGGGCCATTTCATGAAAT 59.547 43.478 24.83 24.83 41.33 2.17
2236 2674 4.650588 CAGAAGGGGCCATTTCATGAAATA 59.349 41.667 28.61 7.80 38.84 1.40
2237 2675 5.306160 CAGAAGGGGCCATTTCATGAAATAT 59.694 40.000 28.61 10.57 38.84 1.28
2238 2676 5.907079 AGAAGGGGCCATTTCATGAAATATT 59.093 36.000 28.61 17.36 38.84 1.28
2239 2677 6.387807 AGAAGGGGCCATTTCATGAAATATTT 59.612 34.615 28.61 17.31 38.84 1.40
2240 2678 6.579850 AGGGGCCATTTCATGAAATATTTT 57.420 33.333 28.61 9.15 38.84 1.82
2241 2679 6.972490 AGGGGCCATTTCATGAAATATTTTT 58.028 32.000 28.61 13.22 38.84 1.94
2242 2680 8.100135 AGGGGCCATTTCATGAAATATTTTTA 57.900 30.769 28.61 4.09 38.84 1.52
2243 2681 8.212995 AGGGGCCATTTCATGAAATATTTTTAG 58.787 33.333 28.61 16.46 38.84 1.85
2244 2682 8.210265 GGGGCCATTTCATGAAATATTTTTAGA 58.790 33.333 28.61 2.64 38.84 2.10
2245 2683 9.783081 GGGCCATTTCATGAAATATTTTTAGAT 57.217 29.630 28.61 5.67 38.84 1.98
2261 2699 7.610580 TTTTTAGATTGAGGTCATTTTGGGT 57.389 32.000 0.00 0.00 0.00 4.51
2262 2700 7.610580 TTTTAGATTGAGGTCATTTTGGGTT 57.389 32.000 0.00 0.00 0.00 4.11
2263 2701 6.588719 TTAGATTGAGGTCATTTTGGGTTG 57.411 37.500 0.00 0.00 0.00 3.77
2264 2702 4.739793 AGATTGAGGTCATTTTGGGTTGA 58.260 39.130 0.00 0.00 0.00 3.18
2265 2703 5.147032 AGATTGAGGTCATTTTGGGTTGAA 58.853 37.500 0.00 0.00 0.00 2.69
2266 2704 4.935352 TTGAGGTCATTTTGGGTTGAAG 57.065 40.909 0.00 0.00 0.00 3.02
2267 2705 3.909732 TGAGGTCATTTTGGGTTGAAGT 58.090 40.909 0.00 0.00 0.00 3.01
2268 2706 4.285863 TGAGGTCATTTTGGGTTGAAGTT 58.714 39.130 0.00 0.00 0.00 2.66
2269 2707 4.714308 TGAGGTCATTTTGGGTTGAAGTTT 59.286 37.500 0.00 0.00 0.00 2.66
2270 2708 5.163457 TGAGGTCATTTTGGGTTGAAGTTTC 60.163 40.000 0.00 0.00 0.00 2.78
2271 2709 4.714308 AGGTCATTTTGGGTTGAAGTTTCA 59.286 37.500 0.00 0.00 34.92 2.69
2272 2710 5.049828 GGTCATTTTGGGTTGAAGTTTCAG 58.950 41.667 0.00 0.00 38.61 3.02
2273 2711 5.163457 GGTCATTTTGGGTTGAAGTTTCAGA 60.163 40.000 0.00 0.00 38.61 3.27
2274 2712 6.462909 GGTCATTTTGGGTTGAAGTTTCAGAT 60.463 38.462 0.00 0.00 38.61 2.90
2275 2713 7.255801 GGTCATTTTGGGTTGAAGTTTCAGATA 60.256 37.037 0.00 0.00 38.61 1.98
2276 2714 7.809806 GTCATTTTGGGTTGAAGTTTCAGATAG 59.190 37.037 0.00 0.00 38.61 2.08
2277 2715 6.648879 TTTTGGGTTGAAGTTTCAGATAGG 57.351 37.500 0.00 0.00 38.61 2.57
2278 2716 4.301072 TGGGTTGAAGTTTCAGATAGGG 57.699 45.455 0.00 0.00 38.61 3.53
2279 2717 3.017442 GGGTTGAAGTTTCAGATAGGGC 58.983 50.000 0.00 0.00 38.61 5.19
2280 2718 3.017442 GGTTGAAGTTTCAGATAGGGCC 58.983 50.000 0.00 0.00 38.61 5.80
2281 2719 3.561313 GGTTGAAGTTTCAGATAGGGCCA 60.561 47.826 6.18 0.00 38.61 5.36
2282 2720 4.273318 GTTGAAGTTTCAGATAGGGCCAT 58.727 43.478 6.18 0.00 38.61 4.40
2283 2721 4.591321 TGAAGTTTCAGATAGGGCCATT 57.409 40.909 6.18 0.00 32.50 3.16
2284 2722 4.934356 TGAAGTTTCAGATAGGGCCATTT 58.066 39.130 6.18 0.00 32.50 2.32
2285 2723 5.332743 TGAAGTTTCAGATAGGGCCATTTT 58.667 37.500 6.18 0.00 32.50 1.82
2286 2724 5.779771 TGAAGTTTCAGATAGGGCCATTTTT 59.220 36.000 6.18 0.00 32.50 1.94
2287 2725 5.665916 AGTTTCAGATAGGGCCATTTTTG 57.334 39.130 6.18 0.00 0.00 2.44
2288 2726 5.086621 AGTTTCAGATAGGGCCATTTTTGT 58.913 37.500 6.18 0.00 0.00 2.83
2289 2727 5.185828 AGTTTCAGATAGGGCCATTTTTGTC 59.814 40.000 6.18 0.00 0.00 3.18
2290 2728 3.631250 TCAGATAGGGCCATTTTTGTCC 58.369 45.455 6.18 0.00 0.00 4.02
2291 2729 3.011144 TCAGATAGGGCCATTTTTGTCCA 59.989 43.478 6.18 0.00 0.00 4.02
2292 2730 3.962718 CAGATAGGGCCATTTTTGTCCAT 59.037 43.478 6.18 0.00 0.00 3.41
2293 2731 4.406649 CAGATAGGGCCATTTTTGTCCATT 59.593 41.667 6.18 0.00 0.00 3.16
2294 2732 5.032170 AGATAGGGCCATTTTTGTCCATTT 58.968 37.500 6.18 0.00 0.00 2.32
2295 2733 5.488561 AGATAGGGCCATTTTTGTCCATTTT 59.511 36.000 6.18 0.00 0.00 1.82
2296 2734 3.753815 AGGGCCATTTTTGTCCATTTTG 58.246 40.909 6.18 0.00 0.00 2.44
2297 2735 3.393941 AGGGCCATTTTTGTCCATTTTGA 59.606 39.130 6.18 0.00 0.00 2.69
2298 2736 3.501828 GGGCCATTTTTGTCCATTTTGAC 59.498 43.478 4.39 0.00 35.77 3.18
2299 2737 3.186205 GGCCATTTTTGTCCATTTTGACG 59.814 43.478 0.00 0.00 38.11 4.35
2380 2818 0.391661 CGTGGTCCCTTCCATGTCAG 60.392 60.000 0.00 0.00 39.81 3.51
2383 2821 1.296715 GTCCCTTCCATGTCAGCGT 59.703 57.895 0.00 0.00 0.00 5.07
2385 2823 1.066430 GTCCCTTCCATGTCAGCGTAA 60.066 52.381 0.00 0.00 0.00 3.18
2550 2988 2.159198 CGCCCCAAATCCTTCTCAAATG 60.159 50.000 0.00 0.00 0.00 2.32
2551 2989 2.419159 GCCCCAAATCCTTCTCAAATGC 60.419 50.000 0.00 0.00 0.00 3.56
2552 2990 2.169144 CCCCAAATCCTTCTCAAATGCC 59.831 50.000 0.00 0.00 0.00 4.40
2553 2991 2.169144 CCCAAATCCTTCTCAAATGCCC 59.831 50.000 0.00 0.00 0.00 5.36
2554 2992 2.159198 CCAAATCCTTCTCAAATGCCCG 60.159 50.000 0.00 0.00 0.00 6.13
2555 2993 1.767759 AATCCTTCTCAAATGCCCGG 58.232 50.000 0.00 0.00 0.00 5.73
2556 2994 0.918983 ATCCTTCTCAAATGCCCGGA 59.081 50.000 0.73 0.00 0.00 5.14
2557 2995 0.035439 TCCTTCTCAAATGCCCGGAC 60.035 55.000 0.73 0.00 0.00 4.79
2558 2996 1.369091 CCTTCTCAAATGCCCGGACG 61.369 60.000 0.73 0.00 0.00 4.79
2582 3020 1.227943 CCGATCATTGGCCGGTCAT 60.228 57.895 10.94 0.00 38.55 3.06
2624 3062 1.593196 TCTCAAACAGGCCTCAAACG 58.407 50.000 0.00 0.00 0.00 3.60
2625 3063 1.140052 TCTCAAACAGGCCTCAAACGA 59.860 47.619 0.00 0.00 0.00 3.85
2627 3065 0.310854 CAAACAGGCCTCAAACGACC 59.689 55.000 0.00 0.00 0.00 4.79
2628 3066 0.182775 AAACAGGCCTCAAACGACCT 59.817 50.000 0.00 0.00 0.00 3.85
2629 3067 3.972227 CAGGCCTCAAACGACCTG 58.028 61.111 0.00 0.00 43.45 4.00
2630 3068 1.672356 CAGGCCTCAAACGACCTGG 60.672 63.158 0.00 0.00 44.90 4.45
2631 3069 3.056328 GGCCTCAAACGACCTGGC 61.056 66.667 0.00 0.00 42.56 4.85
2632 3070 3.423154 GCCTCAAACGACCTGGCG 61.423 66.667 8.60 8.60 33.96 5.69
2633 3071 2.742372 CCTCAAACGACCTGGCGG 60.742 66.667 13.50 0.00 35.12 6.13
2634 3072 2.342279 CTCAAACGACCTGGCGGA 59.658 61.111 13.50 2.88 35.12 5.54
2635 3073 2.027625 CTCAAACGACCTGGCGGAC 61.028 63.158 13.50 0.00 35.12 4.79
2636 3074 3.047877 CAAACGACCTGGCGGACC 61.048 66.667 13.50 0.00 35.12 4.46
2637 3075 3.552384 AAACGACCTGGCGGACCA 61.552 61.111 13.50 0.00 46.51 4.02
2648 3086 3.402681 CGGACCAGCACCCCTCAT 61.403 66.667 0.00 0.00 0.00 2.90
2649 3087 2.063979 CGGACCAGCACCCCTCATA 61.064 63.158 0.00 0.00 0.00 2.15
2650 3088 1.410850 CGGACCAGCACCCCTCATAT 61.411 60.000 0.00 0.00 0.00 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.209175 GGCTAGTCATAGTGGAAATAACATAAG 57.791 37.037 0.00 0.00 0.00 1.73
1 2 8.934697 AGGCTAGTCATAGTGGAAATAACATAA 58.065 33.333 0.00 0.00 0.00 1.90
2 3 8.492415 AGGCTAGTCATAGTGGAAATAACATA 57.508 34.615 0.00 0.00 0.00 2.29
3 4 7.380423 AGGCTAGTCATAGTGGAAATAACAT 57.620 36.000 0.00 0.00 0.00 2.71
4 5 6.808321 AGGCTAGTCATAGTGGAAATAACA 57.192 37.500 0.00 0.00 0.00 2.41
5 6 8.422566 ACTAAGGCTAGTCATAGTGGAAATAAC 58.577 37.037 11.27 0.00 32.61 1.89
6 7 8.548880 ACTAAGGCTAGTCATAGTGGAAATAA 57.451 34.615 11.27 0.00 32.61 1.40
7 8 8.548880 AACTAAGGCTAGTCATAGTGGAAATA 57.451 34.615 12.66 0.00 37.39 1.40
8 9 7.439108 AACTAAGGCTAGTCATAGTGGAAAT 57.561 36.000 12.66 0.00 37.39 2.17
9 10 6.869206 AACTAAGGCTAGTCATAGTGGAAA 57.131 37.500 12.66 0.00 37.39 3.13
10 11 7.068348 CAGTAACTAAGGCTAGTCATAGTGGAA 59.932 40.741 12.66 0.23 37.39 3.53
11 12 6.546403 CAGTAACTAAGGCTAGTCATAGTGGA 59.454 42.308 12.66 2.31 37.39 4.02
12 13 6.321690 ACAGTAACTAAGGCTAGTCATAGTGG 59.678 42.308 12.66 6.30 37.39 4.00
13 14 7.336161 ACAGTAACTAAGGCTAGTCATAGTG 57.664 40.000 12.66 3.66 37.39 2.74
14 15 8.901793 GTTACAGTAACTAAGGCTAGTCATAGT 58.098 37.037 15.22 6.43 37.39 2.12
15 16 8.900781 TGTTACAGTAACTAAGGCTAGTCATAG 58.099 37.037 21.56 5.09 37.39 2.23
16 17 8.812513 TGTTACAGTAACTAAGGCTAGTCATA 57.187 34.615 21.56 0.00 37.39 2.15
17 18 7.713734 TGTTACAGTAACTAAGGCTAGTCAT 57.286 36.000 21.56 0.00 37.39 3.06
18 19 7.395206 TGATGTTACAGTAACTAAGGCTAGTCA 59.605 37.037 21.56 10.22 37.39 3.41
19 20 7.701501 GTGATGTTACAGTAACTAAGGCTAGTC 59.298 40.741 21.56 8.38 37.39 2.59
20 21 7.545489 GTGATGTTACAGTAACTAAGGCTAGT 58.455 38.462 21.56 0.00 40.25 2.57
21 22 6.691818 CGTGATGTTACAGTAACTAAGGCTAG 59.308 42.308 21.56 5.15 39.38 3.42
22 23 6.558009 CGTGATGTTACAGTAACTAAGGCTA 58.442 40.000 21.56 2.93 39.38 3.93
23 24 5.408356 CGTGATGTTACAGTAACTAAGGCT 58.592 41.667 21.56 2.96 39.38 4.58
24 25 4.032558 GCGTGATGTTACAGTAACTAAGGC 59.967 45.833 21.56 18.20 39.38 4.35
25 26 5.165676 TGCGTGATGTTACAGTAACTAAGG 58.834 41.667 21.56 13.84 39.38 2.69
26 27 6.887376 ATGCGTGATGTTACAGTAACTAAG 57.113 37.500 21.56 12.38 39.38 2.18
27 28 8.192110 TGATATGCGTGATGTTACAGTAACTAA 58.808 33.333 21.56 5.60 39.38 2.24
28 29 7.708998 TGATATGCGTGATGTTACAGTAACTA 58.291 34.615 21.56 10.50 39.38 2.24
29 30 6.569780 TGATATGCGTGATGTTACAGTAACT 58.430 36.000 21.56 9.41 39.38 2.24
30 31 6.822073 TGATATGCGTGATGTTACAGTAAC 57.178 37.500 15.58 15.58 39.11 2.50
31 32 7.262048 TCTTGATATGCGTGATGTTACAGTAA 58.738 34.615 0.00 0.00 0.00 2.24
32 33 6.801575 TCTTGATATGCGTGATGTTACAGTA 58.198 36.000 0.00 0.00 0.00 2.74
33 34 5.660460 TCTTGATATGCGTGATGTTACAGT 58.340 37.500 0.00 0.00 0.00 3.55
34 35 6.588348 TTCTTGATATGCGTGATGTTACAG 57.412 37.500 0.00 0.00 0.00 2.74
35 36 6.976636 TTTCTTGATATGCGTGATGTTACA 57.023 33.333 0.00 0.00 0.00 2.41
60 61 8.844244 GCATCACTTCATTTATTAGGACTCATT 58.156 33.333 0.00 0.00 0.00 2.57
61 62 7.994911 TGCATCACTTCATTTATTAGGACTCAT 59.005 33.333 0.00 0.00 0.00 2.90
62 63 7.337938 TGCATCACTTCATTTATTAGGACTCA 58.662 34.615 0.00 0.00 0.00 3.41
63 64 7.792374 TGCATCACTTCATTTATTAGGACTC 57.208 36.000 0.00 0.00 0.00 3.36
64 65 7.994911 TCATGCATCACTTCATTTATTAGGACT 59.005 33.333 0.00 0.00 0.00 3.85
65 66 8.072567 GTCATGCATCACTTCATTTATTAGGAC 58.927 37.037 0.00 0.00 0.00 3.85
66 67 7.041848 CGTCATGCATCACTTCATTTATTAGGA 60.042 37.037 0.00 0.00 0.00 2.94
67 68 7.073883 CGTCATGCATCACTTCATTTATTAGG 58.926 38.462 0.00 0.00 0.00 2.69
68 69 6.576313 GCGTCATGCATCACTTCATTTATTAG 59.424 38.462 0.00 0.00 45.45 1.73
69 70 6.429624 GCGTCATGCATCACTTCATTTATTA 58.570 36.000 0.00 0.00 45.45 0.98
70 71 5.276270 GCGTCATGCATCACTTCATTTATT 58.724 37.500 0.00 0.00 45.45 1.40
71 72 4.852138 GCGTCATGCATCACTTCATTTAT 58.148 39.130 0.00 0.00 45.45 1.40
72 73 4.277257 GCGTCATGCATCACTTCATTTA 57.723 40.909 0.00 0.00 45.45 1.40
73 74 3.141002 GCGTCATGCATCACTTCATTT 57.859 42.857 0.00 0.00 45.45 2.32
74 75 2.838386 GCGTCATGCATCACTTCATT 57.162 45.000 0.00 0.00 45.45 2.57
93 94 7.441157 CCACAGTGGGTAGTAACATATATGTTG 59.559 40.741 32.16 18.84 41.50 3.33
94 95 7.346175 TCCACAGTGGGTAGTAACATATATGTT 59.654 37.037 28.97 28.97 44.66 2.71
95 96 6.842280 TCCACAGTGGGTAGTAACATATATGT 59.158 38.462 20.14 12.75 39.54 2.29
96 97 7.297936 TCCACAGTGGGTAGTAACATATATG 57.702 40.000 20.14 11.29 38.32 1.78
97 98 7.924358 TTCCACAGTGGGTAGTAACATATAT 57.076 36.000 20.14 0.00 38.32 0.86
98 99 7.736881 TTTCCACAGTGGGTAGTAACATATA 57.263 36.000 20.14 0.00 38.32 0.86
99 100 6.630203 TTTCCACAGTGGGTAGTAACATAT 57.370 37.500 20.14 0.00 38.32 1.78
100 101 6.411376 CATTTCCACAGTGGGTAGTAACATA 58.589 40.000 20.14 0.00 38.32 2.29
101 102 4.986054 TTTCCACAGTGGGTAGTAACAT 57.014 40.909 20.14 0.00 38.32 2.71
102 103 4.505918 CCATTTCCACAGTGGGTAGTAACA 60.506 45.833 20.14 0.00 38.32 2.41
103 104 4.007659 CCATTTCCACAGTGGGTAGTAAC 58.992 47.826 20.14 0.00 38.32 2.50
104 105 3.653836 ACCATTTCCACAGTGGGTAGTAA 59.346 43.478 20.14 3.02 38.32 2.24
105 106 3.253220 ACCATTTCCACAGTGGGTAGTA 58.747 45.455 20.14 0.00 38.32 1.82
106 107 2.062636 ACCATTTCCACAGTGGGTAGT 58.937 47.619 20.14 7.67 38.32 2.73
107 108 2.879103 ACCATTTCCACAGTGGGTAG 57.121 50.000 20.14 7.41 38.32 3.18
108 109 4.938575 ATTACCATTTCCACAGTGGGTA 57.061 40.909 20.14 10.33 38.32 3.69
109 110 3.825908 ATTACCATTTCCACAGTGGGT 57.174 42.857 20.14 11.34 38.32 4.51
110 111 6.710744 GTCTATATTACCATTTCCACAGTGGG 59.289 42.308 20.14 5.49 38.32 4.61
111 112 7.509546 AGTCTATATTACCATTTCCACAGTGG 58.490 38.462 14.19 14.19 39.43 4.00
112 113 9.698309 CTAGTCTATATTACCATTTCCACAGTG 57.302 37.037 0.00 0.00 0.00 3.66
113 114 9.435570 ACTAGTCTATATTACCATTTCCACAGT 57.564 33.333 0.00 0.00 0.00 3.55
145 146 9.379791 GGAGTAACTTAAAGTAGTAACATGCAT 57.620 33.333 0.00 0.00 0.00 3.96
146 147 7.820872 GGGAGTAACTTAAAGTAGTAACATGCA 59.179 37.037 0.00 0.00 0.00 3.96
147 148 7.279536 GGGGAGTAACTTAAAGTAGTAACATGC 59.720 40.741 0.00 0.00 0.00 4.06
148 149 8.316214 TGGGGAGTAACTTAAAGTAGTAACATG 58.684 37.037 0.00 0.00 0.00 3.21
149 150 8.316946 GTGGGGAGTAACTTAAAGTAGTAACAT 58.683 37.037 0.00 0.00 0.00 2.71
150 151 7.510343 AGTGGGGAGTAACTTAAAGTAGTAACA 59.490 37.037 0.00 0.00 0.00 2.41
151 152 7.816513 CAGTGGGGAGTAACTTAAAGTAGTAAC 59.183 40.741 0.00 0.00 0.00 2.50
152 153 7.510343 ACAGTGGGGAGTAACTTAAAGTAGTAA 59.490 37.037 0.00 0.00 0.00 2.24
153 154 7.012607 ACAGTGGGGAGTAACTTAAAGTAGTA 58.987 38.462 0.00 0.00 0.00 1.82
154 155 5.842874 ACAGTGGGGAGTAACTTAAAGTAGT 59.157 40.000 0.00 0.00 0.00 2.73
155 156 6.014840 TCACAGTGGGGAGTAACTTAAAGTAG 60.015 42.308 0.00 0.00 0.00 2.57
156 157 5.840149 TCACAGTGGGGAGTAACTTAAAGTA 59.160 40.000 0.00 0.00 0.00 2.24
157 158 4.657039 TCACAGTGGGGAGTAACTTAAAGT 59.343 41.667 0.00 0.00 0.00 2.66
158 159 4.995487 GTCACAGTGGGGAGTAACTTAAAG 59.005 45.833 0.00 0.00 0.00 1.85
159 160 4.657039 AGTCACAGTGGGGAGTAACTTAAA 59.343 41.667 0.00 0.00 0.00 1.52
160 161 4.228824 AGTCACAGTGGGGAGTAACTTAA 58.771 43.478 0.00 0.00 0.00 1.85
161 162 3.853207 AGTCACAGTGGGGAGTAACTTA 58.147 45.455 0.00 0.00 0.00 2.24
162 163 2.690840 AGTCACAGTGGGGAGTAACTT 58.309 47.619 0.00 0.00 0.00 2.66
163 164 2.400467 AGTCACAGTGGGGAGTAACT 57.600 50.000 0.00 0.00 0.00 2.24
164 165 3.163467 ACTAGTCACAGTGGGGAGTAAC 58.837 50.000 0.00 0.00 0.00 2.50
165 166 3.075582 AGACTAGTCACAGTGGGGAGTAA 59.924 47.826 24.44 0.00 0.00 2.24
166 167 2.648304 AGACTAGTCACAGTGGGGAGTA 59.352 50.000 24.44 0.00 0.00 2.59
167 168 1.429687 AGACTAGTCACAGTGGGGAGT 59.570 52.381 24.44 1.39 0.00 3.85
168 169 2.223803 AGACTAGTCACAGTGGGGAG 57.776 55.000 24.44 0.00 0.00 4.30
169 170 3.428532 GTTAGACTAGTCACAGTGGGGA 58.571 50.000 24.44 0.00 0.00 4.81
170 171 2.163815 CGTTAGACTAGTCACAGTGGGG 59.836 54.545 24.44 2.11 0.00 4.96
171 172 3.079578 TCGTTAGACTAGTCACAGTGGG 58.920 50.000 24.44 7.19 0.00 4.61
172 173 4.080969 GTCGTTAGACTAGTCACAGTGG 57.919 50.000 24.44 8.66 43.80 4.00
184 185 5.422312 GCACAAGCACCAAGTCGTTAGAC 62.422 52.174 0.00 0.00 43.42 2.59
185 186 2.479837 CACAAGCACCAAGTCGTTAGA 58.520 47.619 0.00 0.00 0.00 2.10
186 187 1.069906 GCACAAGCACCAAGTCGTTAG 60.070 52.381 0.00 0.00 41.58 2.34
187 188 0.941542 GCACAAGCACCAAGTCGTTA 59.058 50.000 0.00 0.00 41.58 3.18
188 189 1.727467 GCACAAGCACCAAGTCGTT 59.273 52.632 0.00 0.00 41.58 3.85
189 190 3.420943 GCACAAGCACCAAGTCGT 58.579 55.556 0.00 0.00 41.58 4.34
199 200 1.287815 TTGAGCTGCATGCACAAGC 59.712 52.632 18.46 19.16 44.85 4.01
202 203 2.164827 CCTAAATTGAGCTGCATGCACA 59.835 45.455 18.46 11.14 45.94 4.57
203 204 2.424601 TCCTAAATTGAGCTGCATGCAC 59.575 45.455 18.46 13.93 45.94 4.57
204 205 2.725637 TCCTAAATTGAGCTGCATGCA 58.274 42.857 21.29 21.29 45.94 3.96
205 206 4.317671 AATCCTAAATTGAGCTGCATGC 57.682 40.909 11.82 11.82 43.29 4.06
206 207 7.042925 GCTTAAAATCCTAAATTGAGCTGCATG 60.043 37.037 1.02 0.00 0.00 4.06
207 208 6.982724 GCTTAAAATCCTAAATTGAGCTGCAT 59.017 34.615 1.02 0.00 0.00 3.96
208 209 6.332630 GCTTAAAATCCTAAATTGAGCTGCA 58.667 36.000 1.02 0.00 0.00 4.41
209 210 5.456822 CGCTTAAAATCCTAAATTGAGCTGC 59.543 40.000 0.00 0.00 0.00 5.25
210 211 5.456822 GCGCTTAAAATCCTAAATTGAGCTG 59.543 40.000 0.00 0.00 0.00 4.24
211 212 5.450550 GGCGCTTAAAATCCTAAATTGAGCT 60.451 40.000 7.64 0.00 0.00 4.09
212 213 4.740205 GGCGCTTAAAATCCTAAATTGAGC 59.260 41.667 7.64 0.00 0.00 4.26
213 214 5.281727 GGGCGCTTAAAATCCTAAATTGAG 58.718 41.667 7.64 0.00 0.00 3.02
214 215 4.098807 GGGGCGCTTAAAATCCTAAATTGA 59.901 41.667 7.64 0.00 0.00 2.57
215 216 4.099419 AGGGGCGCTTAAAATCCTAAATTG 59.901 41.667 7.64 0.00 0.00 2.32
216 217 4.099419 CAGGGGCGCTTAAAATCCTAAATT 59.901 41.667 7.64 0.00 0.00 1.82
217 218 3.636764 CAGGGGCGCTTAAAATCCTAAAT 59.363 43.478 7.64 0.00 0.00 1.40
218 219 3.020984 CAGGGGCGCTTAAAATCCTAAA 58.979 45.455 7.64 0.00 0.00 1.85
219 220 2.650322 CAGGGGCGCTTAAAATCCTAA 58.350 47.619 7.64 0.00 0.00 2.69
220 221 1.749286 GCAGGGGCGCTTAAAATCCTA 60.749 52.381 7.64 0.00 0.00 2.94
221 222 1.037579 GCAGGGGCGCTTAAAATCCT 61.038 55.000 7.64 0.38 0.00 3.24
222 223 1.319614 TGCAGGGGCGCTTAAAATCC 61.320 55.000 7.64 0.00 45.35 3.01
223 224 0.746659 ATGCAGGGGCGCTTAAAATC 59.253 50.000 7.64 0.00 45.35 2.17
224 225 1.134729 CAATGCAGGGGCGCTTAAAAT 60.135 47.619 7.64 0.00 45.35 1.82
225 226 0.246086 CAATGCAGGGGCGCTTAAAA 59.754 50.000 7.64 0.00 45.35 1.52
226 227 1.603236 CCAATGCAGGGGCGCTTAAA 61.603 55.000 7.64 0.00 45.35 1.52
227 228 2.051518 CCAATGCAGGGGCGCTTAA 61.052 57.895 7.64 0.00 45.35 1.85
228 229 2.440065 CCAATGCAGGGGCGCTTA 60.440 61.111 7.64 0.00 45.35 3.09
229 230 4.365111 TCCAATGCAGGGGCGCTT 62.365 61.111 7.64 0.00 45.35 4.68
230 231 4.809496 CTCCAATGCAGGGGCGCT 62.809 66.667 7.64 0.00 45.35 5.92
232 233 4.431131 ACCTCCAATGCAGGGGCG 62.431 66.667 7.30 0.00 45.35 6.13
233 234 2.757099 CACCTCCAATGCAGGGGC 60.757 66.667 7.30 0.00 41.68 5.80
234 235 2.043652 CCACCTCCAATGCAGGGG 60.044 66.667 7.30 3.81 35.01 4.79
235 236 2.757099 GCCACCTCCAATGCAGGG 60.757 66.667 0.00 0.74 35.01 4.45
236 237 2.757099 GGCCACCTCCAATGCAGG 60.757 66.667 0.00 0.00 37.03 4.85
237 238 0.901580 AAAGGCCACCTCCAATGCAG 60.902 55.000 5.01 0.00 30.89 4.41
238 239 1.155859 AAAGGCCACCTCCAATGCA 59.844 52.632 5.01 0.00 30.89 3.96
239 240 0.899717 TCAAAGGCCACCTCCAATGC 60.900 55.000 5.01 0.00 30.89 3.56
240 241 1.180029 CTCAAAGGCCACCTCCAATG 58.820 55.000 5.01 0.00 30.89 2.82
241 242 0.613012 GCTCAAAGGCCACCTCCAAT 60.613 55.000 5.01 0.00 30.89 3.16
242 243 1.228552 GCTCAAAGGCCACCTCCAA 60.229 57.895 5.01 0.00 30.89 3.53
243 244 2.436109 GCTCAAAGGCCACCTCCA 59.564 61.111 5.01 0.00 30.89 3.86
244 245 2.747855 CGCTCAAAGGCCACCTCC 60.748 66.667 5.01 0.00 30.89 4.30
245 246 2.747855 CCGCTCAAAGGCCACCTC 60.748 66.667 5.01 0.00 30.89 3.85
365 378 1.737838 TGGCGGCAACTATTTCTCAG 58.262 50.000 10.22 0.00 0.00 3.35
397 411 0.165944 GTTGATTTGACCGCTGACCG 59.834 55.000 0.00 0.00 0.00 4.79
405 419 4.104776 CACTTGTGTGTGTTGATTTGACC 58.895 43.478 0.00 0.00 39.24 4.02
431 449 5.200368 AGATTCCGTTGCTTCACATTTTT 57.800 34.783 0.00 0.00 0.00 1.94
463 481 3.118112 AGCCTGGATGGATGACTAAACTG 60.118 47.826 0.00 0.00 38.35 3.16
493 514 2.202892 CTAGAAGGCGGCCGGAAC 60.203 66.667 29.38 10.40 0.00 3.62
543 569 2.816087 GGTGGCCAGCATAATATCACTG 59.184 50.000 29.70 0.00 0.00 3.66
561 587 2.740440 TACGTGCATGGCGTGGTG 60.740 61.111 11.36 0.00 42.87 4.17
562 588 2.740826 GTACGTGCATGGCGTGGT 60.741 61.111 11.36 0.53 42.87 4.16
563 589 3.848830 CGTACGTGCATGGCGTGG 61.849 66.667 11.36 0.00 42.87 4.94
564 590 4.499023 GCGTACGTGCATGGCGTG 62.499 66.667 17.90 1.31 42.87 5.34
595 625 7.376072 GTCGTTTTCTTTCTTTCGTTCATTGAT 59.624 33.333 0.00 0.00 0.00 2.57
597 627 6.075572 GGTCGTTTTCTTTCTTTCGTTCATTG 60.076 38.462 0.00 0.00 0.00 2.82
704 744 2.529151 GATTTGATGCCGTTTTCGCAT 58.471 42.857 0.00 0.00 42.58 4.73
852 906 1.463674 GTAGGTGCTGGGTGAAATGG 58.536 55.000 0.00 0.00 0.00 3.16
899 953 2.120232 CCGGAGAATCGATCGAGTTTG 58.880 52.381 23.84 11.31 34.37 2.93
908 962 0.173481 CTGCTTGACCGGAGAATCGA 59.827 55.000 9.46 0.00 34.37 3.59
909 963 1.424493 GCTGCTTGACCGGAGAATCG 61.424 60.000 9.46 0.00 34.37 3.34
910 964 0.391661 TGCTGCTTGACCGGAGAATC 60.392 55.000 9.46 0.00 0.00 2.52
911 965 0.674895 GTGCTGCTTGACCGGAGAAT 60.675 55.000 9.46 0.00 0.00 2.40
912 966 1.301716 GTGCTGCTTGACCGGAGAA 60.302 57.895 9.46 0.00 0.00 2.87
1532 1589 2.307686 AGGAAAAATCCCAGCCTTCGTA 59.692 45.455 0.00 0.00 0.00 3.43
1536 1593 1.269958 GCAGGAAAAATCCCAGCCTT 58.730 50.000 0.00 0.00 0.00 4.35
1538 1595 0.533951 CTGCAGGAAAAATCCCAGCC 59.466 55.000 5.57 0.00 32.43 4.85
1574 1635 3.439825 TCAACATGATGTGGTACATGCAC 59.560 43.478 0.00 0.00 45.03 4.57
1628 1690 1.476085 AGAGCAGACGGTCATCTTGAG 59.524 52.381 11.27 0.00 42.32 3.02
1638 1700 1.134401 AGAGAGAGAGAGAGCAGACGG 60.134 57.143 0.00 0.00 0.00 4.79
1651 1713 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1652 1714 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1653 1715 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1654 1716 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1655 1717 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1656 1718 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1657 1719 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1658 1720 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1659 1721 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1660 1722 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1661 1723 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1662 1724 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1663 1725 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1664 1726 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
1665 1727 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
1666 1728 4.871822 TGAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
1667 1729 4.501229 GCTGAGAGAGAGAGAGAGAGAGAG 60.501 54.167 0.00 0.00 0.00 3.20
1708 2146 1.816835 CAATTCATGAGCAGTGCCACT 59.183 47.619 12.58 0.00 0.00 4.00
1725 2163 7.713507 TCTTACAACAAGTTACTACAGTGCAAT 59.286 33.333 0.00 0.00 0.00 3.56
1801 2239 3.290710 AGTTTGCCTTGACAATGACACT 58.709 40.909 0.00 0.00 0.00 3.55
1879 2317 5.483937 ACACACCATCCTGTTATCTTGTAGA 59.516 40.000 0.00 0.00 0.00 2.59
1880 2318 5.734720 ACACACCATCCTGTTATCTTGTAG 58.265 41.667 0.00 0.00 0.00 2.74
1883 2321 4.836825 AGACACACCATCCTGTTATCTTG 58.163 43.478 0.00 0.00 0.00 3.02
1884 2322 5.249393 AGAAGACACACCATCCTGTTATCTT 59.751 40.000 0.00 0.00 0.00 2.40
1885 2323 4.780021 AGAAGACACACCATCCTGTTATCT 59.220 41.667 0.00 0.00 0.00 1.98
1886 2324 4.872691 CAGAAGACACACCATCCTGTTATC 59.127 45.833 0.00 0.00 0.00 1.75
1904 2342 2.072298 CCGAGCTTTTCCAGTCAGAAG 58.928 52.381 0.00 0.00 0.00 2.85
1905 2343 1.416401 ACCGAGCTTTTCCAGTCAGAA 59.584 47.619 0.00 0.00 0.00 3.02
1906 2344 1.048601 ACCGAGCTTTTCCAGTCAGA 58.951 50.000 0.00 0.00 0.00 3.27
1907 2345 2.743636 TACCGAGCTTTTCCAGTCAG 57.256 50.000 0.00 0.00 0.00 3.51
1935 2373 5.562705 TTTCACGTTTTTGTCAAACACAC 57.437 34.783 13.53 4.09 33.41 3.82
1944 2382 7.796197 CAGTTTTGTTCATTTTCACGTTTTTGT 59.204 29.630 0.00 0.00 0.00 2.83
1945 2383 8.006590 TCAGTTTTGTTCATTTTCACGTTTTTG 58.993 29.630 0.00 0.00 0.00 2.44
1946 2384 8.007152 GTCAGTTTTGTTCATTTTCACGTTTTT 58.993 29.630 0.00 0.00 0.00 1.94
1947 2385 7.359681 GGTCAGTTTTGTTCATTTTCACGTTTT 60.360 33.333 0.00 0.00 0.00 2.43
1948 2386 6.090223 GGTCAGTTTTGTTCATTTTCACGTTT 59.910 34.615 0.00 0.00 0.00 3.60
1949 2387 5.575218 GGTCAGTTTTGTTCATTTTCACGTT 59.425 36.000 0.00 0.00 0.00 3.99
1950 2388 5.099575 GGTCAGTTTTGTTCATTTTCACGT 58.900 37.500 0.00 0.00 0.00 4.49
1951 2389 4.502645 GGGTCAGTTTTGTTCATTTTCACG 59.497 41.667 0.00 0.00 0.00 4.35
1952 2390 5.660460 AGGGTCAGTTTTGTTCATTTTCAC 58.340 37.500 0.00 0.00 0.00 3.18
1953 2391 5.930837 AGGGTCAGTTTTGTTCATTTTCA 57.069 34.783 0.00 0.00 0.00 2.69
1954 2392 8.360390 AGATAAGGGTCAGTTTTGTTCATTTTC 58.640 33.333 0.00 0.00 0.00 2.29
1955 2393 8.143835 CAGATAAGGGTCAGTTTTGTTCATTTT 58.856 33.333 0.00 0.00 0.00 1.82
1956 2394 7.505585 TCAGATAAGGGTCAGTTTTGTTCATTT 59.494 33.333 0.00 0.00 0.00 2.32
1957 2395 7.004086 TCAGATAAGGGTCAGTTTTGTTCATT 58.996 34.615 0.00 0.00 0.00 2.57
1958 2396 6.542821 TCAGATAAGGGTCAGTTTTGTTCAT 58.457 36.000 0.00 0.00 0.00 2.57
1959 2397 5.935945 TCAGATAAGGGTCAGTTTTGTTCA 58.064 37.500 0.00 0.00 0.00 3.18
1960 2398 6.877611 TTCAGATAAGGGTCAGTTTTGTTC 57.122 37.500 0.00 0.00 0.00 3.18
1961 2399 6.833933 AGTTTCAGATAAGGGTCAGTTTTGTT 59.166 34.615 0.00 0.00 0.00 2.83
1962 2400 6.365520 AGTTTCAGATAAGGGTCAGTTTTGT 58.634 36.000 0.00 0.00 0.00 2.83
1963 2401 6.884280 AGTTTCAGATAAGGGTCAGTTTTG 57.116 37.500 0.00 0.00 0.00 2.44
1964 2402 7.060421 TGAAGTTTCAGATAAGGGTCAGTTTT 58.940 34.615 0.00 0.00 32.50 2.43
1965 2403 6.601332 TGAAGTTTCAGATAAGGGTCAGTTT 58.399 36.000 0.00 0.00 32.50 2.66
1966 2404 6.187727 TGAAGTTTCAGATAAGGGTCAGTT 57.812 37.500 0.00 0.00 32.50 3.16
1967 2405 5.825593 TGAAGTTTCAGATAAGGGTCAGT 57.174 39.130 0.00 0.00 32.50 3.41
1968 2406 5.997746 TGTTGAAGTTTCAGATAAGGGTCAG 59.002 40.000 0.00 0.00 38.61 3.51
1969 2407 5.763204 GTGTTGAAGTTTCAGATAAGGGTCA 59.237 40.000 0.00 0.00 38.61 4.02
1970 2408 5.763204 TGTGTTGAAGTTTCAGATAAGGGTC 59.237 40.000 0.00 0.00 38.61 4.46
1971 2409 5.690865 TGTGTTGAAGTTTCAGATAAGGGT 58.309 37.500 0.00 0.00 38.61 4.34
1972 2410 6.633500 TTGTGTTGAAGTTTCAGATAAGGG 57.367 37.500 0.00 0.00 38.61 3.95
1973 2411 8.971321 CATTTTGTGTTGAAGTTTCAGATAAGG 58.029 33.333 0.00 0.00 38.61 2.69
1974 2412 9.734620 TCATTTTGTGTTGAAGTTTCAGATAAG 57.265 29.630 0.00 0.00 38.61 1.73
1975 2413 9.515020 GTCATTTTGTGTTGAAGTTTCAGATAA 57.485 29.630 0.00 0.00 38.61 1.75
1976 2414 8.902806 AGTCATTTTGTGTTGAAGTTTCAGATA 58.097 29.630 0.00 0.00 38.61 1.98
1977 2415 7.775120 AGTCATTTTGTGTTGAAGTTTCAGAT 58.225 30.769 0.00 0.00 38.61 2.90
1978 2416 7.156876 AGTCATTTTGTGTTGAAGTTTCAGA 57.843 32.000 0.00 0.00 38.61 3.27
1979 2417 6.473455 GGAGTCATTTTGTGTTGAAGTTTCAG 59.527 38.462 0.00 0.00 38.61 3.02
1980 2418 6.071672 TGGAGTCATTTTGTGTTGAAGTTTCA 60.072 34.615 0.00 0.00 34.92 2.69
1981 2419 6.329496 TGGAGTCATTTTGTGTTGAAGTTTC 58.671 36.000 0.00 0.00 0.00 2.78
1982 2420 6.279513 TGGAGTCATTTTGTGTTGAAGTTT 57.720 33.333 0.00 0.00 0.00 2.66
1983 2421 5.913137 TGGAGTCATTTTGTGTTGAAGTT 57.087 34.783 0.00 0.00 0.00 2.66
1984 2422 5.913137 TTGGAGTCATTTTGTGTTGAAGT 57.087 34.783 0.00 0.00 0.00 3.01
1985 2423 6.639686 CAGATTGGAGTCATTTTGTGTTGAAG 59.360 38.462 0.00 0.00 0.00 3.02
1986 2424 6.320926 TCAGATTGGAGTCATTTTGTGTTGAA 59.679 34.615 0.00 0.00 0.00 2.69
1987 2425 5.827267 TCAGATTGGAGTCATTTTGTGTTGA 59.173 36.000 0.00 0.00 0.00 3.18
1988 2426 6.075762 TCAGATTGGAGTCATTTTGTGTTG 57.924 37.500 0.00 0.00 0.00 3.33
1989 2427 6.713762 TTCAGATTGGAGTCATTTTGTGTT 57.286 33.333 0.00 0.00 0.00 3.32
1990 2428 6.713762 TTTCAGATTGGAGTCATTTTGTGT 57.286 33.333 0.00 0.00 0.00 3.72
1991 2429 9.865321 ATATTTTCAGATTGGAGTCATTTTGTG 57.135 29.630 0.00 0.00 0.00 3.33
1998 2436 9.443323 TCGTAAAATATTTTCAGATTGGAGTCA 57.557 29.630 16.56 0.00 0.00 3.41
2005 2443 9.313118 GGCCATTTCGTAAAATATTTTCAGATT 57.687 29.630 16.56 6.31 33.27 2.40
2006 2444 7.926018 GGGCCATTTCGTAAAATATTTTCAGAT 59.074 33.333 16.56 3.70 33.27 2.90
2007 2445 7.123547 AGGGCCATTTCGTAAAATATTTTCAGA 59.876 33.333 16.56 13.76 33.27 3.27
2008 2446 7.264947 AGGGCCATTTCGTAAAATATTTTCAG 58.735 34.615 16.56 11.85 33.27 3.02
2009 2447 7.123547 AGAGGGCCATTTCGTAAAATATTTTCA 59.876 33.333 16.56 0.41 33.27 2.69
2010 2448 7.489160 AGAGGGCCATTTCGTAAAATATTTTC 58.511 34.615 16.56 8.16 33.27 2.29
2011 2449 7.418337 AGAGGGCCATTTCGTAAAATATTTT 57.582 32.000 17.18 17.18 33.27 1.82
2012 2450 7.418337 AAGAGGGCCATTTCGTAAAATATTT 57.582 32.000 6.18 0.00 33.27 1.40
2013 2451 7.418337 AAAGAGGGCCATTTCGTAAAATATT 57.582 32.000 6.18 0.00 33.27 1.28
2014 2452 7.264947 CAAAAGAGGGCCATTTCGTAAAATAT 58.735 34.615 6.18 0.00 33.27 1.28
2015 2453 6.626302 CAAAAGAGGGCCATTTCGTAAAATA 58.374 36.000 6.18 0.00 33.27 1.40
2016 2454 5.478407 CAAAAGAGGGCCATTTCGTAAAAT 58.522 37.500 6.18 0.00 35.43 1.82
2017 2455 4.797933 GCAAAAGAGGGCCATTTCGTAAAA 60.798 41.667 6.18 0.00 0.00 1.52
2018 2456 3.305744 GCAAAAGAGGGCCATTTCGTAAA 60.306 43.478 6.18 0.00 0.00 2.01
2019 2457 2.230266 GCAAAAGAGGGCCATTTCGTAA 59.770 45.455 6.18 0.00 0.00 3.18
2020 2458 1.816224 GCAAAAGAGGGCCATTTCGTA 59.184 47.619 6.18 0.00 0.00 3.43
2021 2459 0.603065 GCAAAAGAGGGCCATTTCGT 59.397 50.000 6.18 0.00 0.00 3.85
2022 2460 0.602562 TGCAAAAGAGGGCCATTTCG 59.397 50.000 6.18 0.00 0.00 3.46
2023 2461 2.234414 TCATGCAAAAGAGGGCCATTTC 59.766 45.455 6.18 0.00 0.00 2.17
2024 2462 2.027837 GTCATGCAAAAGAGGGCCATTT 60.028 45.455 6.18 3.23 0.00 2.32
2025 2463 1.551883 GTCATGCAAAAGAGGGCCATT 59.448 47.619 6.18 0.00 0.00 3.16
2026 2464 1.188863 GTCATGCAAAAGAGGGCCAT 58.811 50.000 6.18 0.00 0.00 4.40
2027 2465 1.243342 CGTCATGCAAAAGAGGGCCA 61.243 55.000 6.18 0.00 0.00 5.36
2028 2466 1.508088 CGTCATGCAAAAGAGGGCC 59.492 57.895 0.00 0.00 0.00 5.80
2029 2467 1.153958 GCGTCATGCAAAAGAGGGC 60.154 57.895 0.00 0.00 45.45 5.19
2053 2491 4.552365 TCAGCATGGCGCCCTAGC 62.552 66.667 26.77 24.28 44.04 3.42
2054 2492 1.890979 CTTCAGCATGGCGCCCTAG 60.891 63.158 26.77 14.98 44.04 3.02
2055 2493 2.190313 CTTCAGCATGGCGCCCTA 59.810 61.111 26.77 6.41 44.04 3.53
2056 2494 3.694058 CTCTTCAGCATGGCGCCCT 62.694 63.158 26.77 12.40 44.04 5.19
2057 2495 3.207669 CTCTTCAGCATGGCGCCC 61.208 66.667 26.77 8.84 44.04 6.13
2058 2496 3.885521 GCTCTTCAGCATGGCGCC 61.886 66.667 22.73 22.73 46.06 6.53
2067 2505 1.817099 GGGGCGTCATGCTCTTCAG 60.817 63.158 0.00 0.00 46.29 3.02
2068 2506 2.268920 GGGGCGTCATGCTCTTCA 59.731 61.111 0.00 0.00 46.29 3.02
2069 2507 2.892425 CGGGGCGTCATGCTCTTC 60.892 66.667 0.00 0.00 46.29 2.87
2070 2508 4.473520 CCGGGGCGTCATGCTCTT 62.474 66.667 0.00 0.00 46.29 2.85
2088 2526 2.585247 CTACCACGGCGCCTTAGC 60.585 66.667 26.68 0.00 0.00 3.09
2089 2527 2.585247 GCTACCACGGCGCCTTAG 60.585 66.667 26.68 18.89 0.00 2.18
2090 2528 4.501714 CGCTACCACGGCGCCTTA 62.502 66.667 26.68 9.22 45.83 2.69
2096 2534 0.870307 CTACATGTCGCTACCACGGC 60.870 60.000 0.00 0.00 38.39 5.68
2097 2535 0.870307 GCTACATGTCGCTACCACGG 60.870 60.000 14.69 0.00 0.00 4.94
2098 2536 0.179148 TGCTACATGTCGCTACCACG 60.179 55.000 21.42 0.00 0.00 4.94
2099 2537 1.860950 CATGCTACATGTCGCTACCAC 59.139 52.381 21.42 0.00 0.00 4.16
2100 2538 1.754226 TCATGCTACATGTCGCTACCA 59.246 47.619 21.42 3.45 0.00 3.25
2101 2539 2.128035 GTCATGCTACATGTCGCTACC 58.872 52.381 21.42 5.31 0.00 3.18
2102 2540 1.781429 CGTCATGCTACATGTCGCTAC 59.219 52.381 21.42 15.37 0.00 3.58
2103 2541 1.864029 GCGTCATGCTACATGTCGCTA 60.864 52.381 30.59 9.79 46.93 4.26
2104 2542 1.148157 GCGTCATGCTACATGTCGCT 61.148 55.000 30.59 6.26 46.93 4.93
2105 2543 1.273887 GCGTCATGCTACATGTCGC 59.726 57.895 26.88 26.88 45.39 5.19
2106 2544 1.490693 GGGCGTCATGCTACATGTCG 61.491 60.000 18.39 18.39 45.43 4.35
2107 2545 1.160329 GGGGCGTCATGCTACATGTC 61.160 60.000 0.00 1.61 45.43 3.06
2108 2546 1.153168 GGGGCGTCATGCTACATGT 60.153 57.895 2.69 2.69 45.43 3.21
2109 2547 2.246739 CGGGGCGTCATGCTACATG 61.247 63.158 1.05 1.05 45.43 3.21
2110 2548 2.108976 CGGGGCGTCATGCTACAT 59.891 61.111 0.00 0.00 45.43 2.29
2111 2549 4.155733 CCGGGGCGTCATGCTACA 62.156 66.667 0.00 0.00 45.43 2.74
2112 2550 3.792053 CTCCGGGGCGTCATGCTAC 62.792 68.421 0.00 0.00 45.43 3.58
2113 2551 2.914756 TACTCCGGGGCGTCATGCTA 62.915 60.000 0.00 0.00 45.43 3.49
2115 2553 3.792053 CTACTCCGGGGCGTCATGC 62.792 68.421 0.00 0.00 45.38 4.06
2116 2554 2.417516 CTACTCCGGGGCGTCATG 59.582 66.667 0.00 0.00 0.00 3.07
2117 2555 2.838225 CCTACTCCGGGGCGTCAT 60.838 66.667 0.00 0.00 0.00 3.06
2125 2563 4.609018 CATGGCGCCCTACTCCGG 62.609 72.222 26.77 0.00 0.00 5.14
2135 2573 2.806929 TGCTATTTGGCATGGCGC 59.193 55.556 15.27 11.69 37.29 6.53
2141 2579 1.383456 GGGCGTCATGCTATTTGGCA 61.383 55.000 0.00 0.00 46.63 4.92
2142 2580 1.103398 AGGGCGTCATGCTATTTGGC 61.103 55.000 0.00 0.00 45.43 4.52
2143 2581 2.254546 TAGGGCGTCATGCTATTTGG 57.745 50.000 0.00 0.00 45.43 3.28
2144 2582 2.031682 GCTTAGGGCGTCATGCTATTTG 60.032 50.000 0.00 0.00 45.43 2.32
2145 2583 2.222027 GCTTAGGGCGTCATGCTATTT 58.778 47.619 0.00 0.00 45.43 1.40
2146 2584 1.543429 GGCTTAGGGCGTCATGCTATT 60.543 52.381 0.00 0.00 45.43 1.73
2147 2585 0.035458 GGCTTAGGGCGTCATGCTAT 59.965 55.000 0.00 0.00 45.43 2.97
2148 2586 1.445942 GGCTTAGGGCGTCATGCTA 59.554 57.895 0.00 0.00 45.43 3.49
2149 2587 2.190578 GGCTTAGGGCGTCATGCT 59.809 61.111 0.00 0.00 45.43 3.79
2157 2595 4.893601 GACGCTCCGGCTTAGGGC 62.894 72.222 0.00 0.00 40.90 5.19
2158 2596 2.797278 ATGACGCTCCGGCTTAGGG 61.797 63.158 0.00 0.00 35.04 3.53
2159 2597 1.592669 CATGACGCTCCGGCTTAGG 60.593 63.158 0.00 0.00 35.04 2.69
2160 2598 2.240500 GCATGACGCTCCGGCTTAG 61.241 63.158 0.00 0.00 35.04 2.18
2161 2599 2.202878 GCATGACGCTCCGGCTTA 60.203 61.111 0.00 0.00 35.04 3.09
2178 2616 2.093764 GCTAGGGTGCCATGCTAGATAG 60.094 54.545 8.10 0.00 0.00 2.08
2179 2617 1.902508 GCTAGGGTGCCATGCTAGATA 59.097 52.381 8.10 0.00 0.00 1.98
2180 2618 0.689623 GCTAGGGTGCCATGCTAGAT 59.310 55.000 8.10 0.00 0.00 1.98
2181 2619 2.136791 GCTAGGGTGCCATGCTAGA 58.863 57.895 8.10 0.00 0.00 2.43
2182 2620 4.787871 GCTAGGGTGCCATGCTAG 57.212 61.111 0.00 0.00 0.00 3.42
2200 2638 4.776322 TTCTGCATGACGCCCGGG 62.776 66.667 19.09 19.09 41.33 5.73
2201 2639 3.197790 CTTCTGCATGACGCCCGG 61.198 66.667 0.00 0.00 41.33 5.73
2202 2640 3.197790 CCTTCTGCATGACGCCCG 61.198 66.667 0.00 0.00 41.33 6.13
2203 2641 2.825836 CCCTTCTGCATGACGCCC 60.826 66.667 0.00 0.00 41.33 6.13
2204 2642 2.825836 CCCCTTCTGCATGACGCC 60.826 66.667 0.00 0.00 41.33 5.68
2205 2643 3.512516 GCCCCTTCTGCATGACGC 61.513 66.667 0.00 0.00 42.89 5.19
2206 2644 2.825836 GGCCCCTTCTGCATGACG 60.826 66.667 0.00 0.00 0.00 4.35
2207 2645 0.685458 AATGGCCCCTTCTGCATGAC 60.685 55.000 0.00 0.00 0.00 3.06
2208 2646 0.041535 AAATGGCCCCTTCTGCATGA 59.958 50.000 0.00 0.00 0.00 3.07
2209 2647 0.462789 GAAATGGCCCCTTCTGCATG 59.537 55.000 0.00 0.00 0.00 4.06
2210 2648 0.041535 TGAAATGGCCCCTTCTGCAT 59.958 50.000 13.45 0.00 0.00 3.96
2211 2649 0.041535 ATGAAATGGCCCCTTCTGCA 59.958 50.000 13.45 0.00 0.00 4.41
2212 2650 0.462789 CATGAAATGGCCCCTTCTGC 59.537 55.000 13.45 0.00 41.79 4.26
2213 2651 2.148446 TCATGAAATGGCCCCTTCTG 57.852 50.000 13.45 9.78 46.73 3.02
2214 2652 2.925966 TTCATGAAATGGCCCCTTCT 57.074 45.000 5.45 0.00 46.73 2.85
2215 2653 5.813513 ATATTTCATGAAATGGCCCCTTC 57.186 39.130 33.94 3.30 46.73 3.46
2216 2654 6.579850 AAATATTTCATGAAATGGCCCCTT 57.420 33.333 33.94 18.58 46.73 3.95
2217 2655 6.579850 AAAATATTTCATGAAATGGCCCCT 57.420 33.333 33.94 16.22 46.73 4.79
2218 2656 8.210265 TCTAAAAATATTTCATGAAATGGCCCC 58.790 33.333 33.94 0.00 46.73 5.80
2219 2657 9.783081 ATCTAAAAATATTTCATGAAATGGCCC 57.217 29.630 33.94 0.00 46.73 5.80
2235 2673 9.320295 ACCCAAAATGACCTCAATCTAAAAATA 57.680 29.630 0.00 0.00 0.00 1.40
2236 2674 8.206126 ACCCAAAATGACCTCAATCTAAAAAT 57.794 30.769 0.00 0.00 0.00 1.82
2237 2675 7.610580 ACCCAAAATGACCTCAATCTAAAAA 57.389 32.000 0.00 0.00 0.00 1.94
2238 2676 7.288852 TCAACCCAAAATGACCTCAATCTAAAA 59.711 33.333 0.00 0.00 0.00 1.52
2239 2677 6.780031 TCAACCCAAAATGACCTCAATCTAAA 59.220 34.615 0.00 0.00 0.00 1.85
2240 2678 6.310941 TCAACCCAAAATGACCTCAATCTAA 58.689 36.000 0.00 0.00 0.00 2.10
2241 2679 5.886609 TCAACCCAAAATGACCTCAATCTA 58.113 37.500 0.00 0.00 0.00 1.98
2242 2680 4.739793 TCAACCCAAAATGACCTCAATCT 58.260 39.130 0.00 0.00 0.00 2.40
2243 2681 5.011023 ACTTCAACCCAAAATGACCTCAATC 59.989 40.000 0.00 0.00 0.00 2.67
2244 2682 4.901250 ACTTCAACCCAAAATGACCTCAAT 59.099 37.500 0.00 0.00 0.00 2.57
2245 2683 4.285863 ACTTCAACCCAAAATGACCTCAA 58.714 39.130 0.00 0.00 0.00 3.02
2246 2684 3.909732 ACTTCAACCCAAAATGACCTCA 58.090 40.909 0.00 0.00 0.00 3.86
2247 2685 4.937201 AACTTCAACCCAAAATGACCTC 57.063 40.909 0.00 0.00 0.00 3.85
2248 2686 4.714308 TGAAACTTCAACCCAAAATGACCT 59.286 37.500 0.00 0.00 33.55 3.85
2249 2687 5.017294 TGAAACTTCAACCCAAAATGACC 57.983 39.130 0.00 0.00 33.55 4.02
2250 2688 5.901552 TCTGAAACTTCAACCCAAAATGAC 58.098 37.500 0.00 0.00 36.64 3.06
2251 2689 6.729690 ATCTGAAACTTCAACCCAAAATGA 57.270 33.333 0.00 0.00 36.64 2.57
2252 2690 7.092716 CCTATCTGAAACTTCAACCCAAAATG 58.907 38.462 0.00 0.00 36.64 2.32
2253 2691 6.211384 CCCTATCTGAAACTTCAACCCAAAAT 59.789 38.462 0.00 0.00 36.64 1.82
2254 2692 5.538433 CCCTATCTGAAACTTCAACCCAAAA 59.462 40.000 0.00 0.00 36.64 2.44
2255 2693 5.076873 CCCTATCTGAAACTTCAACCCAAA 58.923 41.667 0.00 0.00 36.64 3.28
2256 2694 4.662278 CCCTATCTGAAACTTCAACCCAA 58.338 43.478 0.00 0.00 36.64 4.12
2257 2695 3.561313 GCCCTATCTGAAACTTCAACCCA 60.561 47.826 0.00 0.00 36.64 4.51
2258 2696 3.017442 GCCCTATCTGAAACTTCAACCC 58.983 50.000 0.00 0.00 36.64 4.11
2259 2697 3.017442 GGCCCTATCTGAAACTTCAACC 58.983 50.000 0.00 0.00 36.64 3.77
2260 2698 3.686016 TGGCCCTATCTGAAACTTCAAC 58.314 45.455 0.00 0.00 36.64 3.18
2261 2699 4.591321 ATGGCCCTATCTGAAACTTCAA 57.409 40.909 0.00 0.00 36.64 2.69
2262 2700 4.591321 AATGGCCCTATCTGAAACTTCA 57.409 40.909 0.00 0.00 35.57 3.02
2263 2701 5.921962 AAAATGGCCCTATCTGAAACTTC 57.078 39.130 0.00 0.00 0.00 3.01
2264 2702 5.543790 ACAAAAATGGCCCTATCTGAAACTT 59.456 36.000 0.00 0.00 0.00 2.66
2265 2703 5.086621 ACAAAAATGGCCCTATCTGAAACT 58.913 37.500 0.00 0.00 0.00 2.66
2266 2704 5.405935 ACAAAAATGGCCCTATCTGAAAC 57.594 39.130 0.00 0.00 0.00 2.78
2267 2705 4.466015 GGACAAAAATGGCCCTATCTGAAA 59.534 41.667 0.00 0.00 0.00 2.69
2268 2706 4.023291 GGACAAAAATGGCCCTATCTGAA 58.977 43.478 0.00 0.00 0.00 3.02
2269 2707 3.011144 TGGACAAAAATGGCCCTATCTGA 59.989 43.478 0.00 0.00 35.66 3.27
2270 2708 3.364549 TGGACAAAAATGGCCCTATCTG 58.635 45.455 0.00 0.00 35.66 2.90
2271 2709 3.756082 TGGACAAAAATGGCCCTATCT 57.244 42.857 0.00 0.00 35.66 1.98
2272 2710 5.357742 AAATGGACAAAAATGGCCCTATC 57.642 39.130 0.00 0.00 35.66 2.08
2273 2711 5.250313 TCAAAATGGACAAAAATGGCCCTAT 59.750 36.000 0.00 0.00 35.66 2.57
2274 2712 4.594920 TCAAAATGGACAAAAATGGCCCTA 59.405 37.500 0.00 0.00 35.66 3.53
2275 2713 3.393941 TCAAAATGGACAAAAATGGCCCT 59.606 39.130 0.00 0.00 35.66 5.19
2276 2714 3.501828 GTCAAAATGGACAAAAATGGCCC 59.498 43.478 0.00 0.00 35.66 5.80
2277 2715 3.186205 CGTCAAAATGGACAAAAATGGCC 59.814 43.478 0.00 0.00 37.66 5.36
2278 2716 4.054671 TCGTCAAAATGGACAAAAATGGC 58.945 39.130 0.00 0.00 37.66 4.40
2279 2717 5.046529 TGTCGTCAAAATGGACAAAAATGG 58.953 37.500 0.00 0.00 37.72 3.16
2280 2718 6.580963 TTGTCGTCAAAATGGACAAAAATG 57.419 33.333 3.58 0.00 44.89 2.32
2293 2731 4.350346 CATGCTCTGTTTTTGTCGTCAAA 58.650 39.130 3.64 3.64 41.10 2.69
2294 2732 3.791789 GCATGCTCTGTTTTTGTCGTCAA 60.792 43.478 11.37 0.00 0.00 3.18
2295 2733 2.286950 GCATGCTCTGTTTTTGTCGTCA 60.287 45.455 11.37 0.00 0.00 4.35
2296 2734 2.286950 TGCATGCTCTGTTTTTGTCGTC 60.287 45.455 20.33 0.00 0.00 4.20
2297 2735 1.675483 TGCATGCTCTGTTTTTGTCGT 59.325 42.857 20.33 0.00 0.00 4.34
2298 2736 2.404265 TGCATGCTCTGTTTTTGTCG 57.596 45.000 20.33 0.00 0.00 4.35
2299 2737 2.991190 CCATGCATGCTCTGTTTTTGTC 59.009 45.455 21.69 0.00 0.00 3.18
2555 2993 4.910585 AATGATCGGGCGGGCGTC 62.911 66.667 0.00 0.00 0.00 5.19
2567 3005 2.369983 AATCATGACCGGCCAATGAT 57.630 45.000 17.15 17.15 33.84 2.45
2595 3033 1.419374 CTGTTTGAGAAGTCCGTCCG 58.581 55.000 0.00 0.00 0.00 4.79
2596 3034 1.797025 CCTGTTTGAGAAGTCCGTCC 58.203 55.000 0.00 0.00 0.00 4.79
2600 3038 1.072331 TGAGGCCTGTTTGAGAAGTCC 59.928 52.381 12.00 0.00 0.00 3.85
2631 3069 1.410850 ATATGAGGGGTGCTGGTCCG 61.411 60.000 0.00 0.00 0.00 4.79
2632 3070 2.544768 ATATGAGGGGTGCTGGTCC 58.455 57.895 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.