Multiple sequence alignment - TraesCS1D01G421100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G421100 chr1D 100.000 7935 0 0 1 7935 477212371 477220305 0.000000e+00 14654.0
1 TraesCS1D01G421100 chr1B 93.463 2876 120 32 4751 7612 664803756 664806577 0.000000e+00 4207.0
2 TraesCS1D01G421100 chr1B 93.135 2695 142 21 2066 4734 664801090 664803767 0.000000e+00 3912.0
3 TraesCS1D01G421100 chr1B 88.142 1695 104 43 129 1771 664798985 664800634 0.000000e+00 1927.0
4 TraesCS1D01G421100 chr1B 94.688 320 14 1 1752 2068 664800648 664800967 1.990000e-135 494.0
5 TraesCS1D01G421100 chr1B 81.592 402 34 19 1226 1626 677936026 677935664 6.020000e-76 296.0
6 TraesCS1D01G421100 chr1B 92.308 104 6 1 10 111 664798897 664799000 6.420000e-31 147.0
7 TraesCS1D01G421100 chr1A 95.058 2671 91 18 4813 7449 573331566 573334229 0.000000e+00 4163.0
8 TraesCS1D01G421100 chr1A 93.120 1497 79 15 2066 3549 573328952 573330437 0.000000e+00 2172.0
9 TraesCS1D01G421100 chr1A 87.751 1796 106 52 1 1771 573326805 573328511 0.000000e+00 1993.0
10 TraesCS1D01G421100 chr1A 94.074 675 28 6 4059 4728 573330859 573331526 0.000000e+00 1014.0
11 TraesCS1D01G421100 chr1A 91.455 433 35 2 3576 4008 573330430 573330860 1.910000e-165 593.0
12 TraesCS1D01G421100 chr1A 93.189 323 13 4 1752 2068 573328525 573328844 4.340000e-127 466.0
13 TraesCS1D01G421100 chr1A 87.770 278 21 6 7610 7882 573335591 573335860 5.980000e-81 313.0
14 TraesCS1D01G421100 chr1A 95.181 166 8 0 7451 7616 573334739 573334904 6.110000e-66 263.0
15 TraesCS1D01G421100 chr3B 87.406 667 46 18 1253 1907 169823466 169824106 0.000000e+00 732.0
16 TraesCS1D01G421100 chr3B 77.041 392 36 23 6849 7236 276880636 276880977 8.180000e-40 176.0
17 TraesCS1D01G421100 chr3B 75.660 341 30 22 6899 7236 276907303 276907593 3.890000e-23 121.0
18 TraesCS1D01G421100 chr3D 83.721 387 38 17 6854 7238 184661567 184661930 7.620000e-90 342.0
19 TraesCS1D01G421100 chr5A 82.750 400 40 16 6849 7244 222374529 222374903 5.940000e-86 329.0
20 TraesCS1D01G421100 chr7B 82.587 402 30 20 1226 1626 687663830 687664192 1.280000e-82 318.0
21 TraesCS1D01G421100 chr7D 90.870 230 18 1 6743 6972 41752140 41751914 1.000000e-78 305.0
22 TraesCS1D01G421100 chr7D 77.143 560 62 23 1240 1772 551743110 551742590 1.700000e-66 265.0
23 TraesCS1D01G421100 chr7D 84.390 205 23 3 1755 1958 511116806 511117002 8.130000e-45 193.0
24 TraesCS1D01G421100 chr4D 90.854 164 13 1 4115 4276 87574438 87574601 1.340000e-52 219.0
25 TraesCS1D01G421100 chr4D 91.150 113 10 0 1261 1373 144877974 144877862 3.830000e-33 154.0
26 TraesCS1D01G421100 chr4A 91.503 153 13 0 4124 4276 500148610 500148762 2.240000e-50 211.0
27 TraesCS1D01G421100 chr5D 84.397 141 20 2 7441 7579 103611830 103611970 3.860000e-28 137.0
28 TraesCS1D01G421100 chr3A 82.734 139 19 5 7443 7578 720886032 720885896 1.400000e-22 119.0
29 TraesCS1D01G421100 chr3A 82.734 139 19 5 7443 7578 720913319 720913183 1.400000e-22 119.0
30 TraesCS1D01G421100 chr3A 82.734 139 19 5 7443 7578 720933084 720932948 1.400000e-22 119.0
31 TraesCS1D01G421100 chr3A 82.734 139 19 5 7443 7578 721003483 721003347 1.400000e-22 119.0
32 TraesCS1D01G421100 chr6D 96.154 52 2 0 1333 1384 4693139 4693190 1.420000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G421100 chr1D 477212371 477220305 7934 False 14654.000 14654 100.00000 1 7935 1 chr1D.!!$F1 7934
1 TraesCS1D01G421100 chr1B 664798897 664806577 7680 False 2137.400 4207 92.34720 10 7612 5 chr1B.!!$F1 7602
2 TraesCS1D01G421100 chr1A 573326805 573335860 9055 False 1372.125 4163 92.19975 1 7882 8 chr1A.!!$F1 7881
3 TraesCS1D01G421100 chr3B 169823466 169824106 640 False 732.000 732 87.40600 1253 1907 1 chr3B.!!$F1 654
4 TraesCS1D01G421100 chr7D 551742590 551743110 520 True 265.000 265 77.14300 1240 1772 1 chr7D.!!$R2 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
637 655 0.108615 CAGGCGGACTAGTCAACCAG 60.109 60.000 26.49 18.77 0.00 4.00 F
1549 1621 0.400213 ACCGAAACAATCTCTGGGCA 59.600 50.000 0.00 0.00 0.00 5.36 F
1550 1622 0.804989 CCGAAACAATCTCTGGGCAC 59.195 55.000 0.00 0.00 0.00 5.01 F
3221 3531 0.108804 TCTCGTCATTTCGACTGGGC 60.109 55.000 0.00 0.00 42.98 5.36 F
3810 4126 0.177836 TGGACATGTGTATCGGCTGG 59.822 55.000 1.15 0.00 0.00 4.85 F
4778 5118 0.451383 TGTGTCACACAAACTGCTGC 59.549 50.000 8.60 0.00 41.69 5.25 F
5552 5904 0.463654 GCATGCCGGGTGAACTATGA 60.464 55.000 6.36 0.00 0.00 2.15 F
6369 6739 1.078848 GGCGACTCTGCTCCACATT 60.079 57.895 0.00 0.00 34.52 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 2140 0.039180 TGGTCTCTCCCGAGCTGTAA 59.961 55.000 0.00 0.0 37.19 2.41 R
2361 2658 0.323087 TCAAGACGTCCTCGGGATCA 60.323 55.000 13.01 0.0 41.85 2.92 R
3357 3667 0.445436 CTGCCGAAGCACTGATTGAC 59.555 55.000 0.00 0.0 46.52 3.18 R
5000 5345 0.450583 GTGTCGACGTCAGCATAGGA 59.549 55.000 17.16 0.0 0.00 2.94 R
5532 5884 0.464373 CATAGTTCACCCGGCATGCT 60.464 55.000 18.92 0.0 0.00 3.79 R
5597 5949 1.067142 TGCTGAATGACCCGTAGACAC 60.067 52.381 0.00 0.0 0.00 3.67 R
6375 6745 1.258676 TGAATCTTGCCTGCATTGCA 58.741 45.000 11.50 11.5 36.84 4.08 R
7794 9384 0.597568 CACAAAGCAGCCCGAAATGA 59.402 50.000 0.00 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 109 4.801891 ACTTGTCATCTAAAGCGACGTAA 58.198 39.130 0.00 0.00 32.17 3.18
243 254 6.114187 TCTCATAGCCCTGGTACATTATTG 57.886 41.667 0.00 0.00 38.20 1.90
330 342 3.119245 TCGTCGAGAGGTTTATTTCCTGG 60.119 47.826 0.00 0.00 35.20 4.45
336 348 6.598064 TCGAGAGGTTTATTTCCTGGAAATTC 59.402 38.462 32.87 24.42 41.64 2.17
341 353 6.374613 AGGTTTATTTCCTGGAAATTCTCGTC 59.625 38.462 32.87 19.60 41.64 4.20
344 356 7.938140 TTATTTCCTGGAAATTCTCGTCAAT 57.062 32.000 32.87 13.36 41.64 2.57
353 366 8.964420 TGGAAATTCTCGTCAATACATTTTTC 57.036 30.769 0.00 0.00 0.00 2.29
411 424 6.645003 CAGGGTTAAGAAAACAAACATAAGGC 59.355 38.462 0.00 0.00 0.00 4.35
539 553 1.885887 CCGCCAAATCTCCAACAAGAA 59.114 47.619 0.00 0.00 0.00 2.52
554 568 5.278512 CCAACAAGAAGAAAAGTAAGAGGGC 60.279 44.000 0.00 0.00 0.00 5.19
556 570 5.635120 ACAAGAAGAAAAGTAAGAGGGCAT 58.365 37.500 0.00 0.00 0.00 4.40
632 650 3.075005 GCCCAGGCGGACTAGTCA 61.075 66.667 23.91 0.00 0.00 3.41
634 652 1.218316 CCCAGGCGGACTAGTCAAC 59.782 63.158 23.91 14.51 0.00 3.18
635 653 1.218316 CCAGGCGGACTAGTCAACC 59.782 63.158 23.91 22.00 0.00 3.77
636 654 1.541310 CCAGGCGGACTAGTCAACCA 61.541 60.000 26.49 0.00 0.00 3.67
637 655 0.108615 CAGGCGGACTAGTCAACCAG 60.109 60.000 26.49 18.77 0.00 4.00
638 656 1.448013 GGCGGACTAGTCAACCAGC 60.448 63.158 23.91 18.16 0.00 4.85
644 662 0.910088 ACTAGTCAACCAGCCCTCCC 60.910 60.000 0.00 0.00 0.00 4.30
662 680 1.604592 CCCCTCCCCCTCCTACTCTT 61.605 65.000 0.00 0.00 0.00 2.85
805 854 3.834056 TGCCCCCACCCGGAAAAA 61.834 61.111 0.73 0.00 0.00 1.94
826 879 1.073768 GAGGACTCGCTTTCACTCGC 61.074 60.000 0.00 0.00 0.00 5.03
892 945 6.564557 TGTCCTCCGGTAAATAATAAACCT 57.435 37.500 0.00 0.00 0.00 3.50
895 948 5.666718 TCCTCCGGTAAATAATAAACCTCCA 59.333 40.000 0.00 0.00 0.00 3.86
900 954 6.408891 CCGGTAAATAATAAACCTCCACCTCT 60.409 42.308 0.00 0.00 0.00 3.69
902 956 6.704937 GGTAAATAATAAACCTCCACCTCTCG 59.295 42.308 0.00 0.00 0.00 4.04
925 979 2.041405 CCACCCTCCTCCTCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
927 981 1.075600 CACCCTCCTCCTCCTCCTC 60.076 68.421 0.00 0.00 0.00 3.71
981 1042 2.671396 CGCCAGTATATAACCGCCAATC 59.329 50.000 0.00 0.00 0.00 2.67
1191 1252 1.298859 ATGTCAAAGGTTCGGCTCGC 61.299 55.000 0.00 0.00 0.00 5.03
1209 1270 1.657751 GCCCCCTCAATTTCGCTCAC 61.658 60.000 0.00 0.00 0.00 3.51
1421 1482 2.349817 GCACTTCACTTGTGATGAACGG 60.350 50.000 19.06 9.34 37.60 4.44
1422 1483 2.872245 CACTTCACTTGTGATGAACGGT 59.128 45.455 19.06 0.00 37.60 4.83
1423 1484 3.312421 CACTTCACTTGTGATGAACGGTT 59.688 43.478 19.06 0.00 37.60 4.44
1462 1523 1.137872 CCTGAGCCTCGCAATTCTACT 59.862 52.381 0.00 0.00 0.00 2.57
1547 1619 2.472695 TCACCGAAACAATCTCTGGG 57.527 50.000 0.00 0.00 0.00 4.45
1548 1620 0.804989 CACCGAAACAATCTCTGGGC 59.195 55.000 0.00 0.00 0.00 5.36
1549 1621 0.400213 ACCGAAACAATCTCTGGGCA 59.600 50.000 0.00 0.00 0.00 5.36
1550 1622 0.804989 CCGAAACAATCTCTGGGCAC 59.195 55.000 0.00 0.00 0.00 5.01
1551 1623 1.611673 CCGAAACAATCTCTGGGCACT 60.612 52.381 0.00 0.00 0.00 4.40
1552 1624 1.466167 CGAAACAATCTCTGGGCACTG 59.534 52.381 0.00 0.00 0.00 3.66
1553 1625 2.508526 GAAACAATCTCTGGGCACTGT 58.491 47.619 0.00 0.00 0.00 3.55
1554 1626 2.664402 AACAATCTCTGGGCACTGTT 57.336 45.000 0.00 0.00 0.00 3.16
1555 1627 2.191128 ACAATCTCTGGGCACTGTTC 57.809 50.000 0.00 0.00 0.00 3.18
1556 1628 1.701847 ACAATCTCTGGGCACTGTTCT 59.298 47.619 0.00 0.00 0.00 3.01
1557 1629 2.107204 ACAATCTCTGGGCACTGTTCTT 59.893 45.455 0.00 0.00 0.00 2.52
1558 1630 3.152341 CAATCTCTGGGCACTGTTCTTT 58.848 45.455 0.00 0.00 0.00 2.52
1559 1631 3.515602 ATCTCTGGGCACTGTTCTTTT 57.484 42.857 0.00 0.00 0.00 2.27
1560 1632 4.640771 ATCTCTGGGCACTGTTCTTTTA 57.359 40.909 0.00 0.00 0.00 1.52
1561 1633 3.740115 TCTCTGGGCACTGTTCTTTTAC 58.260 45.455 0.00 0.00 0.00 2.01
1562 1634 3.135712 TCTCTGGGCACTGTTCTTTTACA 59.864 43.478 0.00 0.00 0.00 2.41
1563 1635 3.882888 CTCTGGGCACTGTTCTTTTACAA 59.117 43.478 0.00 0.00 0.00 2.41
1564 1636 3.630312 TCTGGGCACTGTTCTTTTACAAC 59.370 43.478 0.00 0.00 0.00 3.32
1786 1943 8.434733 TCATCTTGATTGATTCTGATTCAGAC 57.565 34.615 15.90 6.60 40.46 3.51
1787 1944 6.898912 TCTTGATTGATTCTGATTCAGACG 57.101 37.500 15.90 0.00 40.46 4.18
1837 1994 3.382832 CCCCGGAGCAGAACGTCT 61.383 66.667 0.73 0.00 0.00 4.18
2027 2190 1.264295 GTCCAGGTCCGTTCTAGGTT 58.736 55.000 0.00 0.00 0.00 3.50
2068 2234 2.106511 AGCAGGTGTAAGGTTCACACAT 59.893 45.455 7.80 0.00 46.53 3.21
2199 2495 1.825622 GTAGAGGGGCCATGCAAGC 60.826 63.158 4.39 3.55 0.00 4.01
2321 2618 2.743928 GGCCGCAGTGAAGGAGTG 60.744 66.667 9.00 0.00 0.00 3.51
2361 2658 0.694771 TGGCCTTCTTCATCAGCTGT 59.305 50.000 14.67 0.00 0.00 4.40
2362 2659 1.093159 GGCCTTCTTCATCAGCTGTG 58.907 55.000 14.67 11.47 0.00 3.66
2364 2661 2.641305 GCCTTCTTCATCAGCTGTGAT 58.359 47.619 14.67 0.00 44.85 3.06
2367 2664 2.996249 TCTTCATCAGCTGTGATCCC 57.004 50.000 14.67 0.00 41.85 3.85
2471 2770 3.122948 ACGGCGCATCGTCAAATTATATC 59.877 43.478 10.83 0.00 39.34 1.63
2472 2771 3.659735 GGCGCATCGTCAAATTATATCG 58.340 45.455 10.83 0.00 0.00 2.92
2488 2789 2.768253 ATCGGATCAAACAGAGCACA 57.232 45.000 0.00 0.00 33.23 4.57
2527 2828 4.337555 GCATAGAAAACAGAGCATGATGGT 59.662 41.667 0.00 0.00 0.00 3.55
2774 3076 1.949525 CACAACCAGAACCTGACCAAG 59.050 52.381 0.00 0.00 32.44 3.61
3014 3322 3.306472 TCCGGGGGATTTTTATTCTGG 57.694 47.619 0.00 0.00 0.00 3.86
3036 3346 2.557924 TGCACAGTGGGAAATGATTGAC 59.442 45.455 0.00 0.00 0.00 3.18
3046 3356 6.374333 GTGGGAAATGATTGACTGCTTAAGTA 59.626 38.462 4.02 0.00 40.07 2.24
3052 3362 8.565896 AATGATTGACTGCTTAAGTATGACAA 57.434 30.769 4.02 6.94 40.07 3.18
3071 3381 4.932146 ACAAGGCACACATGTAGTTTTTC 58.068 39.130 0.00 0.00 0.00 2.29
3077 3387 4.037446 GCACACATGTAGTTTTTCAAGGGA 59.963 41.667 0.00 0.00 0.00 4.20
3141 3451 1.001048 TGGTTGTAGAGTTCGACACCG 60.001 52.381 0.00 0.00 31.34 4.94
3174 3484 6.521151 AAAGACATTTTCATCTAGCTTGGG 57.479 37.500 0.00 0.00 0.00 4.12
3206 3516 8.321716 CCTCTTCAAATTCGTACTAAATTCTCG 58.678 37.037 4.23 0.00 0.00 4.04
3217 3527 6.468319 CGTACTAAATTCTCGTCATTTCGACT 59.532 38.462 0.00 0.00 42.98 4.18
3220 3530 2.363788 TTCTCGTCATTTCGACTGGG 57.636 50.000 0.00 0.00 42.98 4.45
3221 3531 0.108804 TCTCGTCATTTCGACTGGGC 60.109 55.000 0.00 0.00 42.98 5.36
3228 3538 1.098050 ATTTCGACTGGGCATTCTGC 58.902 50.000 0.00 0.00 44.08 4.26
3245 3555 2.365617 TCTGCATTGCCCTACTAGTAGC 59.634 50.000 22.39 14.53 31.95 3.58
3248 3558 3.901222 TGCATTGCCCTACTAGTAGCATA 59.099 43.478 22.39 11.28 34.72 3.14
3249 3559 4.532126 TGCATTGCCCTACTAGTAGCATAT 59.468 41.667 22.39 12.69 34.72 1.78
3251 3561 6.212589 TGCATTGCCCTACTAGTAGCATATTA 59.787 38.462 22.39 6.56 34.72 0.98
3252 3562 6.758886 GCATTGCCCTACTAGTAGCATATTAG 59.241 42.308 22.39 8.42 36.98 1.73
3253 3563 5.916661 TGCCCTACTAGTAGCATATTAGC 57.083 43.478 22.39 15.06 34.57 3.09
3254 3564 5.330233 TGCCCTACTAGTAGCATATTAGCA 58.670 41.667 22.39 16.96 34.57 3.49
3256 3566 6.100668 GCCCTACTAGTAGCATATTAGCAAC 58.899 44.000 22.39 0.00 34.57 4.17
3257 3567 6.295123 GCCCTACTAGTAGCATATTAGCAACA 60.295 42.308 22.39 0.00 34.57 3.33
3258 3568 7.667557 CCCTACTAGTAGCATATTAGCAACAA 58.332 38.462 22.39 0.00 34.57 2.83
3259 3569 7.815068 CCCTACTAGTAGCATATTAGCAACAAG 59.185 40.741 22.39 4.88 34.57 3.16
3261 3571 6.525629 ACTAGTAGCATATTAGCAACAAGGG 58.474 40.000 0.00 0.00 34.57 3.95
3263 3573 5.755849 AGTAGCATATTAGCAACAAGGGTT 58.244 37.500 0.00 0.00 37.87 4.11
3280 3590 2.223572 GGGTTGGATTTGTGCGATGATC 60.224 50.000 0.00 0.00 0.00 2.92
3286 3596 3.802139 GGATTTGTGCGATGATCGTTCTA 59.198 43.478 16.83 4.36 42.81 2.10
3298 3608 1.246649 TCGTTCTAACCCGTGTGCTA 58.753 50.000 0.00 0.00 0.00 3.49
3302 3612 2.740447 GTTCTAACCCGTGTGCTAAAGG 59.260 50.000 0.00 0.00 0.00 3.11
3318 3628 9.461312 TGTGCTAAAGGTCTCAACATTTATTAT 57.539 29.630 0.00 0.00 39.93 1.28
3343 3653 6.207614 TGCAACCAATATGTTAGTTGTTAGCA 59.792 34.615 13.29 4.39 38.61 3.49
3357 3667 2.488937 TGTTAGCACATGTGATTGCAGG 59.511 45.455 29.80 0.09 41.48 4.85
3414 3724 4.092771 TCTCAGATTTCGTGTTAGGTCG 57.907 45.455 0.00 0.00 0.00 4.79
3513 3829 8.184192 CCGTTAACTGAGAAGAAAATTATGCAT 58.816 33.333 3.79 3.79 0.00 3.96
3519 3835 9.453572 ACTGAGAAGAAAATTATGCATTAGTCA 57.546 29.630 3.54 0.00 0.00 3.41
3592 3908 2.861462 GCCGCATTACATTGGCTTAA 57.139 45.000 0.00 0.00 44.16 1.85
3619 3935 5.543507 ATCCAATGTGTTTGCCAGTAAAA 57.456 34.783 0.00 0.00 33.73 1.52
3687 4003 4.265073 GGTTTGTTCTCACTATCTGGCAT 58.735 43.478 0.00 0.00 0.00 4.40
3693 4009 6.003326 TGTTCTCACTATCTGGCATTTCAAA 58.997 36.000 0.00 0.00 0.00 2.69
3701 4017 3.655486 TCTGGCATTTCAAATGCTGTTG 58.345 40.909 29.61 18.32 44.02 3.33
3716 4032 0.482446 TGTTGAGCCCCTGTTTGGAT 59.518 50.000 0.00 0.00 38.35 3.41
3730 4046 5.105756 CCTGTTTGGATTGGGTGTATCTTTC 60.106 44.000 0.00 0.00 38.35 2.62
3741 4057 3.557054 GGTGTATCTTTCTGTGTGCTCCA 60.557 47.826 0.00 0.00 0.00 3.86
3748 4064 5.423015 TCTTTCTGTGTGCTCCAAGATATC 58.577 41.667 0.00 0.00 0.00 1.63
3751 4067 4.026052 TCTGTGTGCTCCAAGATATCTGA 58.974 43.478 5.86 0.00 0.00 3.27
3767 4083 0.958091 CTGACTCTCTATCTGCCGGG 59.042 60.000 2.18 0.00 0.00 5.73
3800 4116 7.304735 TCGTTCTTGAAATTAATGGACATGTG 58.695 34.615 1.15 0.00 0.00 3.21
3805 4121 8.611757 TCTTGAAATTAATGGACATGTGTATCG 58.388 33.333 1.15 0.00 0.00 2.92
3806 4122 7.258022 TGAAATTAATGGACATGTGTATCGG 57.742 36.000 1.15 0.00 0.00 4.18
3807 4123 5.689383 AATTAATGGACATGTGTATCGGC 57.311 39.130 1.15 0.00 0.00 5.54
3809 4125 2.245159 ATGGACATGTGTATCGGCTG 57.755 50.000 1.15 0.00 0.00 4.85
3810 4126 0.177836 TGGACATGTGTATCGGCTGG 59.822 55.000 1.15 0.00 0.00 4.85
3833 4149 4.214332 GGGTTTTCACTCACTTGTCAGATC 59.786 45.833 0.00 0.00 0.00 2.75
3944 4264 3.976701 CTGCTTGCCCTACCCCACG 62.977 68.421 0.00 0.00 0.00 4.94
3956 4276 2.263540 CCCACGACAGGTAACGGG 59.736 66.667 0.00 0.00 46.39 5.28
3968 4288 1.066752 TAACGGGATCGATGGCACG 59.933 57.895 0.54 4.66 40.11 5.34
3989 4309 3.498082 GGCACACCTTAATAAGTTTGCG 58.502 45.455 9.92 0.00 30.54 4.85
4060 4380 1.067516 CACGGATGGATGATTTTGGGC 59.932 52.381 0.00 0.00 0.00 5.36
4061 4381 1.063717 ACGGATGGATGATTTTGGGCT 60.064 47.619 0.00 0.00 0.00 5.19
4062 4382 1.610522 CGGATGGATGATTTTGGGCTC 59.389 52.381 0.00 0.00 0.00 4.70
4063 4383 2.750807 CGGATGGATGATTTTGGGCTCT 60.751 50.000 0.00 0.00 0.00 4.09
4064 4384 2.626743 GGATGGATGATTTTGGGCTCTG 59.373 50.000 0.00 0.00 0.00 3.35
4065 4385 2.905415 TGGATGATTTTGGGCTCTGT 57.095 45.000 0.00 0.00 0.00 3.41
4066 4386 2.726821 TGGATGATTTTGGGCTCTGTC 58.273 47.619 0.00 0.00 0.00 3.51
4067 4387 1.672881 GGATGATTTTGGGCTCTGTCG 59.327 52.381 0.00 0.00 0.00 4.35
4316 4640 1.405821 CCCACGAGTCATGTCTCCTAC 59.594 57.143 13.35 0.00 0.00 3.18
4555 4879 2.674727 TCCAACGCCGGGTACGTA 60.675 61.111 2.18 0.00 44.30 3.57
4558 4882 1.653094 CCAACGCCGGGTACGTAGTA 61.653 60.000 2.18 0.00 44.30 1.82
4581 4905 2.427453 AGCATCTACCTTCATCGTCGTT 59.573 45.455 0.00 0.00 0.00 3.85
4583 4907 4.278669 AGCATCTACCTTCATCGTCGTTAT 59.721 41.667 0.00 0.00 0.00 1.89
4588 4912 7.130303 TCTACCTTCATCGTCGTTATATCAG 57.870 40.000 0.00 0.00 0.00 2.90
4592 4916 5.287274 CCTTCATCGTCGTTATATCAGCATC 59.713 44.000 0.00 0.00 0.00 3.91
4594 4918 6.013842 TCATCGTCGTTATATCAGCATCTT 57.986 37.500 0.00 0.00 0.00 2.40
4663 5003 2.105821 TCTTCCACTGAATTGGACGGTT 59.894 45.455 0.00 0.00 45.80 4.44
4733 5073 2.642311 TCAGTGACCACTCTCTCTCTCT 59.358 50.000 0.00 0.00 40.20 3.10
4734 5074 3.009723 CAGTGACCACTCTCTCTCTCTC 58.990 54.545 0.00 0.00 40.20 3.20
4735 5075 2.912956 AGTGACCACTCTCTCTCTCTCT 59.087 50.000 0.00 0.00 36.92 3.10
4736 5076 3.055094 AGTGACCACTCTCTCTCTCTCTC 60.055 52.174 0.00 0.00 36.92 3.20
4737 5077 3.055094 GTGACCACTCTCTCTCTCTCTCT 60.055 52.174 0.00 0.00 0.00 3.10
4738 5078 3.197766 TGACCACTCTCTCTCTCTCTCTC 59.802 52.174 0.00 0.00 0.00 3.20
4739 5079 3.452627 GACCACTCTCTCTCTCTCTCTCT 59.547 52.174 0.00 0.00 0.00 3.10
4740 5080 3.452627 ACCACTCTCTCTCTCTCTCTCTC 59.547 52.174 0.00 0.00 0.00 3.20
4741 5081 3.708631 CCACTCTCTCTCTCTCTCTCTCT 59.291 52.174 0.00 0.00 0.00 3.10
4742 5082 4.202202 CCACTCTCTCTCTCTCTCTCTCTC 60.202 54.167 0.00 0.00 0.00 3.20
4743 5083 4.648762 CACTCTCTCTCTCTCTCTCTCTCT 59.351 50.000 0.00 0.00 0.00 3.10
4744 5084 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
4745 5085 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
4746 5086 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4747 5087 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4748 5088 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4749 5089 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4750 5090 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4751 5091 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4752 5092 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4753 5093 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4754 5094 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4755 5095 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4756 5096 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4757 5097 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4758 5098 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4759 5099 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4760 5100 4.892345 TCTCTCTCTCTCTCTCTCTCTCTG 59.108 50.000 0.00 0.00 0.00 3.35
4778 5118 0.451383 TGTGTCACACAAACTGCTGC 59.549 50.000 8.60 0.00 41.69 5.25
4933 5277 6.674861 TCAAGTCCCTATATTTACCTCCACAA 59.325 38.462 0.00 0.00 0.00 3.33
5071 5416 3.433306 TGGAAAGGTATCTGGTGGTTG 57.567 47.619 0.00 0.00 0.00 3.77
5073 5418 2.290960 GGAAAGGTATCTGGTGGTTGCT 60.291 50.000 0.00 0.00 0.00 3.91
5480 5832 5.629079 AGCAACTGAAATTACTTACTGCC 57.371 39.130 0.00 0.00 0.00 4.85
5516 5868 6.656632 TGCATTTGAAATGGGTACAACTTA 57.343 33.333 18.52 0.00 0.00 2.24
5532 5884 5.865085 ACAACTTATGGCTGAACTGACTTA 58.135 37.500 0.00 0.00 0.00 2.24
5552 5904 0.463654 GCATGCCGGGTGAACTATGA 60.464 55.000 6.36 0.00 0.00 2.15
5565 5917 4.464597 GTGAACTATGACAGGAAGAGGTCT 59.535 45.833 0.00 0.00 35.11 3.85
5671 6023 3.484649 GTGCGCTATCATTTTGCAAGATG 59.515 43.478 20.94 20.94 37.30 2.90
5921 6274 2.086869 CTCCTGCAATACCCACAACAG 58.913 52.381 0.00 0.00 0.00 3.16
5929 6282 4.035675 GCAATACCCACAACAGAATCTAGC 59.964 45.833 0.00 0.00 0.00 3.42
6033 6386 4.517285 TCGACTACATAAACGGAGGTAGT 58.483 43.478 10.27 10.27 46.58 2.73
6040 6393 8.678199 ACTACATAAACGGAGGTAGTTACTAAC 58.322 37.037 0.00 0.00 42.63 2.34
6074 6427 1.949525 GCAAACAGTTCCAGAAGCTGA 59.050 47.619 13.38 0.00 32.44 4.26
6079 6444 4.623932 ACAGTTCCAGAAGCTGAATGTA 57.376 40.909 13.38 0.00 32.44 2.29
6089 6454 5.931146 CAGAAGCTGAATGTATCCATCCTAC 59.069 44.000 0.00 0.00 32.44 3.18
6099 6464 6.575244 TGTATCCATCCTACTTTCCATGTT 57.425 37.500 0.00 0.00 0.00 2.71
6280 6650 7.520119 TCTACACATTGCGATAACAAGTTAG 57.480 36.000 0.00 0.00 31.96 2.34
6369 6739 1.078848 GGCGACTCTGCTCCACATT 60.079 57.895 0.00 0.00 34.52 2.71
6375 6745 2.490903 GACTCTGCTCCACATTGCATTT 59.509 45.455 0.00 0.00 38.59 2.32
6499 6869 4.148128 ACGAAATCTCTGCATTCCATCT 57.852 40.909 0.00 0.00 0.00 2.90
6525 6895 7.382488 TGTTGTTTCGACAAAAACAGATTTTCA 59.618 29.630 10.25 0.94 46.56 2.69
6623 6993 5.248248 TGTGGTGTTCTATGATCTCCTCAAA 59.752 40.000 0.00 0.00 37.44 2.69
6672 7042 0.454196 AAAAGCACAGAAACGGCGTT 59.546 45.000 21.19 21.19 0.00 4.84
6681 7051 1.144969 GAAACGGCGTTGACTCATCA 58.855 50.000 27.50 0.00 0.00 3.07
6741 7111 7.555195 TGAATCTGTATTGATTGTTCATGCTCT 59.445 33.333 0.00 0.00 36.86 4.09
6753 7123 6.544928 TGTTCATGCTCTAGTTCAAGGATA 57.455 37.500 0.00 0.00 0.00 2.59
6924 7301 7.471041 AGTGTAGCCCATCTCTATATCAGTTA 58.529 38.462 0.00 0.00 0.00 2.24
6986 7363 6.431234 AGAGCATTCTCGTTTGGAAATTTAGT 59.569 34.615 0.00 0.00 44.02 2.24
6996 7373 6.581166 CGTTTGGAAATTTAGTTGGAAGCTAC 59.419 38.462 0.00 0.00 0.00 3.58
7022 7399 4.878397 AGCTATGCTAAGTTTAGTTGCCTG 59.122 41.667 0.00 0.00 36.99 4.85
7376 7758 8.729805 TTTTAGACAAACTGCAATTTTTCCAT 57.270 26.923 3.33 0.00 0.00 3.41
7431 7815 7.587028 CGAATTTGCACATTTAAGCACAAAAAT 59.413 29.630 0.00 0.00 41.05 1.82
7600 8492 4.697756 CGTGCCCGGGTGACACAT 62.698 66.667 24.63 0.00 33.89 3.21
7616 8508 3.668447 ACACATCTGGAGTGTCAATGAC 58.332 45.455 6.41 6.41 46.57 3.06
7617 8509 3.071457 ACACATCTGGAGTGTCAATGACA 59.929 43.478 12.63 12.63 46.57 3.58
7631 9216 4.767255 GACAGGTGCTCCGCCCAG 62.767 72.222 0.00 0.00 39.05 4.45
7636 9221 4.840005 GTGCTCCGCCCAGCTACC 62.840 72.222 3.36 0.00 40.39 3.18
7655 9240 3.068064 GGGGCCACCGTCATTTGG 61.068 66.667 4.39 0.00 37.78 3.28
7703 9288 0.816825 CAATGGTCTCATCAGGCCCG 60.817 60.000 0.00 0.00 45.00 6.13
7705 9290 4.554036 GGTCTCATCAGGCCCGCC 62.554 72.222 0.00 0.00 38.69 6.13
7748 9338 0.468226 GGGCTGGTCCGATCATTACA 59.532 55.000 0.00 0.00 34.94 2.41
7749 9339 1.541233 GGGCTGGTCCGATCATTACAG 60.541 57.143 0.00 0.00 34.94 2.74
7750 9340 1.541233 GGCTGGTCCGATCATTACAGG 60.541 57.143 0.00 0.00 0.00 4.00
7751 9341 1.412710 GCTGGTCCGATCATTACAGGA 59.587 52.381 0.00 0.00 0.00 3.86
7752 9342 2.546795 GCTGGTCCGATCATTACAGGAG 60.547 54.545 0.00 0.00 32.82 3.69
7753 9343 2.036475 CTGGTCCGATCATTACAGGAGG 59.964 54.545 0.00 0.00 32.82 4.30
7754 9344 1.270358 GGTCCGATCATTACAGGAGGC 60.270 57.143 0.00 0.00 32.82 4.70
7755 9345 1.689273 GTCCGATCATTACAGGAGGCT 59.311 52.381 0.00 0.00 32.82 4.58
7764 9354 4.277593 CAGGAGGCTAGGAGCGCG 62.278 72.222 0.00 0.00 43.62 6.86
7821 9411 2.127496 CTGCTTTGTGCGTGCGAG 60.127 61.111 0.00 0.00 46.63 5.03
7824 9414 2.168621 CTTTGTGCGTGCGAGTCG 59.831 61.111 8.54 8.54 0.00 4.18
7847 9437 4.072088 GCGTGTTTGTCCGGCTCG 62.072 66.667 0.00 0.00 0.00 5.03
7883 9473 4.740822 CCCGGCCTTTGGGTCCTG 62.741 72.222 6.04 0.00 42.07 3.86
7886 9476 4.299796 GGCCTTTGGGTCCTGCCA 62.300 66.667 0.00 0.00 41.76 4.92
7887 9477 2.037847 GCCTTTGGGTCCTGCCAT 59.962 61.111 0.00 0.00 39.65 4.40
7888 9478 2.353610 GCCTTTGGGTCCTGCCATG 61.354 63.158 0.00 0.00 39.65 3.66
7889 9479 1.683365 CCTTTGGGTCCTGCCATGG 60.683 63.158 7.63 7.63 39.65 3.66
7890 9480 2.283821 TTTGGGTCCTGCCATGGC 60.284 61.111 30.54 30.54 39.65 4.40
7911 9501 4.136517 CAACAATTTTTGCTGTCATGGC 57.863 40.909 0.00 0.00 0.00 4.40
7912 9502 3.472283 ACAATTTTTGCTGTCATGGCA 57.528 38.095 0.00 0.00 37.97 4.92
7913 9503 3.806380 ACAATTTTTGCTGTCATGGCAA 58.194 36.364 0.00 2.28 46.12 4.52
7917 9507 3.130264 TTGCTGTCATGGCAAAGGT 57.870 47.368 0.00 0.00 45.05 3.50
7918 9508 1.412079 TTGCTGTCATGGCAAAGGTT 58.588 45.000 0.00 0.00 45.05 3.50
7919 9509 1.412079 TGCTGTCATGGCAAAGGTTT 58.588 45.000 0.00 0.00 36.71 3.27
7920 9510 1.340889 TGCTGTCATGGCAAAGGTTTC 59.659 47.619 0.00 0.00 36.71 2.78
7921 9511 1.340889 GCTGTCATGGCAAAGGTTTCA 59.659 47.619 0.00 0.00 0.00 2.69
7922 9512 2.608752 GCTGTCATGGCAAAGGTTTCAG 60.609 50.000 0.00 0.00 0.00 3.02
7923 9513 1.962807 TGTCATGGCAAAGGTTTCAGG 59.037 47.619 0.00 0.00 0.00 3.86
7924 9514 2.238521 GTCATGGCAAAGGTTTCAGGA 58.761 47.619 0.00 0.00 0.00 3.86
7925 9515 2.627699 GTCATGGCAAAGGTTTCAGGAA 59.372 45.455 0.00 0.00 0.00 3.36
7926 9516 3.259123 GTCATGGCAAAGGTTTCAGGAAT 59.741 43.478 0.00 0.00 0.00 3.01
7927 9517 4.462483 GTCATGGCAAAGGTTTCAGGAATA 59.538 41.667 0.00 0.00 0.00 1.75
7928 9518 4.462483 TCATGGCAAAGGTTTCAGGAATAC 59.538 41.667 0.00 0.00 0.00 1.89
7929 9519 4.112634 TGGCAAAGGTTTCAGGAATACT 57.887 40.909 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 131 5.357032 AGAATTTTCAGAACCACGTCACTTT 59.643 36.000 0.00 0.00 0.00 2.66
129 132 4.881850 AGAATTTTCAGAACCACGTCACTT 59.118 37.500 0.00 0.00 0.00 3.16
130 133 4.451900 AGAATTTTCAGAACCACGTCACT 58.548 39.130 0.00 0.00 0.00 3.41
131 134 4.608445 CGAGAATTTTCAGAACCACGTCAC 60.608 45.833 0.00 0.00 0.00 3.67
132 135 3.493129 CGAGAATTTTCAGAACCACGTCA 59.507 43.478 0.00 0.00 0.00 4.35
133 136 3.664537 GCGAGAATTTTCAGAACCACGTC 60.665 47.826 0.00 0.00 0.00 4.34
134 137 2.223377 GCGAGAATTTTCAGAACCACGT 59.777 45.455 0.00 0.00 0.00 4.49
227 238 6.709018 ATAACAACAATAATGTACCAGGGC 57.291 37.500 0.00 0.00 39.40 5.19
258 269 3.546670 GTCACTTCAGACGCCGTAAATAG 59.453 47.826 0.00 0.00 0.00 1.73
264 275 0.388649 GATGTCACTTCAGACGCCGT 60.389 55.000 0.00 0.00 41.41 5.68
265 277 0.388520 TGATGTCACTTCAGACGCCG 60.389 55.000 0.00 0.00 41.41 6.46
330 342 9.612620 ACTGAAAAATGTATTGACGAGAATTTC 57.387 29.630 0.00 0.00 0.00 2.17
336 348 8.873830 AGATGTACTGAAAAATGTATTGACGAG 58.126 33.333 0.00 0.00 0.00 4.18
539 553 2.092914 CCGGATGCCCTCTTACTTTTCT 60.093 50.000 0.00 0.00 0.00 2.52
582 600 2.464459 CGGATCGGGTTTGCTGCTC 61.464 63.158 0.00 0.00 0.00 4.26
601 619 2.985847 GGGCCTGTGGTGTGAAGC 60.986 66.667 0.84 0.00 0.00 3.86
625 643 0.910088 GGGAGGGCTGGTTGACTAGT 60.910 60.000 0.00 0.00 0.00 2.57
626 644 1.627297 GGGGAGGGCTGGTTGACTAG 61.627 65.000 0.00 0.00 0.00 2.57
627 645 1.615424 GGGGAGGGCTGGTTGACTA 60.615 63.158 0.00 0.00 0.00 2.59
628 646 2.936032 GGGGAGGGCTGGTTGACT 60.936 66.667 0.00 0.00 0.00 3.41
630 648 4.285790 AGGGGGAGGGCTGGTTGA 62.286 66.667 0.00 0.00 0.00 3.18
644 662 1.133104 GTAAGAGTAGGAGGGGGAGGG 60.133 61.905 0.00 0.00 0.00 4.30
662 680 1.686800 GGCGGTTCTGGGTAGGGTA 60.687 63.158 0.00 0.00 0.00 3.69
694 712 1.751927 GGAGGTTGGAGCATGGCTG 60.752 63.158 0.00 0.00 39.88 4.85
707 729 3.580319 GGCCAGGTGGTTGGAGGT 61.580 66.667 0.00 0.00 40.87 3.85
799 848 2.186532 AAGCGAGTCCTCCTTTTTCC 57.813 50.000 0.00 0.00 0.00 3.13
805 854 0.892063 GAGTGAAAGCGAGTCCTCCT 59.108 55.000 0.00 0.00 0.00 3.69
826 879 7.463383 CGGATTGATTGAAAACTTCTAGACGAG 60.463 40.741 2.78 0.00 0.00 4.18
892 945 4.779733 GGGAGGGCGAGAGGTGGA 62.780 72.222 0.00 0.00 0.00 4.02
917 971 2.125229 CGACGACGAGGAGGAGGA 60.125 66.667 0.00 0.00 42.66 3.71
925 979 2.394912 GAGGACGACGACGACGAG 59.605 66.667 25.15 9.88 42.66 4.18
927 981 3.081159 GAGGAGGACGACGACGACG 62.081 68.421 17.60 17.60 42.66 5.12
981 1042 2.888414 GAGGAGTCCCGAGAAAGATAGG 59.112 54.545 5.25 0.00 37.58 2.57
1087 1148 4.516195 GGCCGAGGAGCCGAAGAC 62.516 72.222 0.00 0.00 44.57 3.01
1191 1252 0.035056 AGTGAGCGAAATTGAGGGGG 60.035 55.000 0.00 0.00 0.00 5.40
1438 1499 2.019984 GAATTGCGAGGCTCAGGAATT 58.980 47.619 25.76 25.76 40.27 2.17
1441 1502 1.137086 GTAGAATTGCGAGGCTCAGGA 59.863 52.381 15.95 5.90 0.00 3.86
1462 1523 3.008923 TGCATGTGGAGGTGAGAATTACA 59.991 43.478 0.00 0.00 0.00 2.41
1545 1617 2.287368 CCGTTGTAAAAGAACAGTGCCC 60.287 50.000 0.00 0.00 0.00 5.36
1546 1618 2.614983 TCCGTTGTAAAAGAACAGTGCC 59.385 45.455 0.00 0.00 0.00 5.01
1547 1619 3.064271 TGTCCGTTGTAAAAGAACAGTGC 59.936 43.478 0.00 0.00 0.00 4.40
1548 1620 4.569162 TCTGTCCGTTGTAAAAGAACAGTG 59.431 41.667 0.00 0.00 0.00 3.66
1549 1621 4.569564 GTCTGTCCGTTGTAAAAGAACAGT 59.430 41.667 0.00 0.00 0.00 3.55
1550 1622 4.569162 TGTCTGTCCGTTGTAAAAGAACAG 59.431 41.667 0.00 0.00 0.00 3.16
1551 1623 4.505808 TGTCTGTCCGTTGTAAAAGAACA 58.494 39.130 0.00 0.00 0.00 3.18
1552 1624 5.473796 TTGTCTGTCCGTTGTAAAAGAAC 57.526 39.130 0.00 0.00 0.00 3.01
1553 1625 6.316640 TGAATTGTCTGTCCGTTGTAAAAGAA 59.683 34.615 0.00 0.00 0.00 2.52
1554 1626 5.818336 TGAATTGTCTGTCCGTTGTAAAAGA 59.182 36.000 0.00 0.00 0.00 2.52
1555 1627 5.907391 GTGAATTGTCTGTCCGTTGTAAAAG 59.093 40.000 0.00 0.00 0.00 2.27
1556 1628 5.587043 AGTGAATTGTCTGTCCGTTGTAAAA 59.413 36.000 0.00 0.00 0.00 1.52
1557 1629 5.120399 AGTGAATTGTCTGTCCGTTGTAAA 58.880 37.500 0.00 0.00 0.00 2.01
1558 1630 4.699637 AGTGAATTGTCTGTCCGTTGTAA 58.300 39.130 0.00 0.00 0.00 2.41
1559 1631 4.038763 AGAGTGAATTGTCTGTCCGTTGTA 59.961 41.667 0.00 0.00 0.00 2.41
1560 1632 3.131396 GAGTGAATTGTCTGTCCGTTGT 58.869 45.455 0.00 0.00 0.00 3.32
1561 1633 3.393800 AGAGTGAATTGTCTGTCCGTTG 58.606 45.455 0.00 0.00 0.00 4.10
1562 1634 3.753294 AGAGTGAATTGTCTGTCCGTT 57.247 42.857 0.00 0.00 0.00 4.44
1563 1635 3.322254 AGAAGAGTGAATTGTCTGTCCGT 59.678 43.478 0.00 0.00 0.00 4.69
1564 1636 3.677121 CAGAAGAGTGAATTGTCTGTCCG 59.323 47.826 0.00 0.00 32.75 4.79
1786 1943 0.929824 CAACAGCAGCAAACGGTTCG 60.930 55.000 0.00 0.00 0.00 3.95
1787 1944 1.208642 GCAACAGCAGCAAACGGTTC 61.209 55.000 0.00 0.00 0.00 3.62
1983 2140 0.039180 TGGTCTCTCCCGAGCTGTAA 59.961 55.000 0.00 0.00 37.19 2.41
2093 2386 4.006989 ACTGCTGCCAATATGTCGTTTTA 58.993 39.130 0.00 0.00 0.00 1.52
2156 2450 4.311520 TCACTAGCCAAGGACAGTACTA 57.688 45.455 0.00 0.00 0.00 1.82
2157 2451 3.170991 TCACTAGCCAAGGACAGTACT 57.829 47.619 0.00 0.00 0.00 2.73
2158 2452 3.258622 AGTTCACTAGCCAAGGACAGTAC 59.741 47.826 0.00 0.00 0.00 2.73
2199 2495 1.189752 TAAGAGAGTGCAGGCTCAGG 58.810 55.000 15.78 0.00 37.94 3.86
2321 2618 0.464554 GTTCATGGTAGGGCCTGAGC 60.465 60.000 18.53 10.55 38.35 4.26
2361 2658 0.323087 TCAAGACGTCCTCGGGATCA 60.323 55.000 13.01 0.00 41.85 2.92
2362 2659 0.815734 TTCAAGACGTCCTCGGGATC 59.184 55.000 13.01 0.00 41.85 3.36
2364 2661 1.874345 GCTTCAAGACGTCCTCGGGA 61.874 60.000 13.01 0.00 41.85 5.14
2367 2664 0.734253 CCTGCTTCAAGACGTCCTCG 60.734 60.000 13.01 0.53 43.34 4.63
2431 2728 4.795795 CGCCGTGTGAAAATATAAAATGCA 59.204 37.500 0.00 0.00 0.00 3.96
2471 2770 2.159476 CCATTGTGCTCTGTTTGATCCG 60.159 50.000 0.00 0.00 0.00 4.18
2472 2771 2.416431 GCCATTGTGCTCTGTTTGATCC 60.416 50.000 0.00 0.00 0.00 3.36
2488 2789 1.876497 ATGCTTCCGTTTGCGCCATT 61.876 50.000 4.18 0.00 36.67 3.16
2527 2828 8.973182 GGATGGGTAAATGGTATTTTGTTTCTA 58.027 33.333 0.00 0.00 0.00 2.10
2887 3191 2.364317 CCAGCTCCCTTCCCTCGA 60.364 66.667 0.00 0.00 0.00 4.04
2955 3263 0.951040 AAAGCTGTAGCCACTCGCAC 60.951 55.000 0.00 0.00 43.38 5.34
3014 3322 2.557924 TCAATCATTTCCCACTGTGCAC 59.442 45.455 10.75 10.75 0.00 4.57
3036 3346 4.002982 TGTGCCTTGTCATACTTAAGCAG 58.997 43.478 1.29 0.00 0.00 4.24
3046 3356 3.423539 ACTACATGTGTGCCTTGTCAT 57.576 42.857 9.11 0.00 33.78 3.06
3052 3362 4.037923 CCTTGAAAAACTACATGTGTGCCT 59.962 41.667 9.11 0.00 0.00 4.75
3071 3381 7.666063 AAATCCTCTAAAATTCCATCCCTTG 57.334 36.000 0.00 0.00 0.00 3.61
3152 3462 4.400567 GCCCAAGCTAGATGAAAATGTCTT 59.599 41.667 0.00 0.00 35.50 3.01
3174 3484 2.369394 ACGAATTTGAAGAGGGATGGC 58.631 47.619 0.00 0.00 0.00 4.40
3221 3531 3.813443 ACTAGTAGGGCAATGCAGAATG 58.187 45.455 7.79 0.00 40.87 2.67
3228 3538 6.758886 GCTAATATGCTACTAGTAGGGCAATG 59.241 42.308 27.24 13.19 38.21 2.82
3229 3539 6.440647 TGCTAATATGCTACTAGTAGGGCAAT 59.559 38.462 27.24 15.08 38.21 3.56
3234 3544 7.815068 CCTTGTTGCTAATATGCTACTAGTAGG 59.185 40.741 27.24 12.48 38.74 3.18
3254 3564 1.068434 CGCACAAATCCAACCCTTGTT 59.932 47.619 0.00 0.00 30.99 2.83
3256 3566 0.958091 TCGCACAAATCCAACCCTTG 59.042 50.000 0.00 0.00 0.00 3.61
3257 3567 1.545582 CATCGCACAAATCCAACCCTT 59.454 47.619 0.00 0.00 0.00 3.95
3258 3568 1.176527 CATCGCACAAATCCAACCCT 58.823 50.000 0.00 0.00 0.00 4.34
3259 3569 1.173043 TCATCGCACAAATCCAACCC 58.827 50.000 0.00 0.00 0.00 4.11
3261 3571 2.095853 ACGATCATCGCACAAATCCAAC 59.904 45.455 7.05 0.00 45.12 3.77
3263 3573 2.022764 ACGATCATCGCACAAATCCA 57.977 45.000 7.05 0.00 45.12 3.41
3280 3590 2.068837 TTAGCACACGGGTTAGAACG 57.931 50.000 0.00 0.00 0.00 3.95
3286 3596 0.763035 AGACCTTTAGCACACGGGTT 59.237 50.000 0.00 0.00 0.00 4.11
3298 3608 8.034804 GGTTGCATAATAAATGTTGAGACCTTT 58.965 33.333 0.00 0.00 0.00 3.11
3302 3612 8.931385 ATTGGTTGCATAATAAATGTTGAGAC 57.069 30.769 0.00 0.00 0.00 3.36
3357 3667 0.445436 CTGCCGAAGCACTGATTGAC 59.555 55.000 0.00 0.00 46.52 3.18
3414 3724 4.068302 GTACGCACGAGGCTACAC 57.932 61.111 0.00 0.00 41.67 2.90
3520 3836 5.990386 TCATGTATGTGCAAAGCATGTTTTT 59.010 32.000 18.20 0.00 41.91 1.94
3542 3858 8.417273 TGCTAGCTATTGTATACCAGTAATCA 57.583 34.615 17.23 0.00 0.00 2.57
3592 3908 8.532186 TTACTGGCAAACACATTGGATATAAT 57.468 30.769 0.00 0.00 39.54 1.28
3633 3949 9.201127 CCCTAACTGTAACTTTACTGTTCTAAC 57.799 37.037 20.97 0.00 46.16 2.34
3647 3963 1.701292 ACCCACCACCCTAACTGTAAC 59.299 52.381 0.00 0.00 0.00 2.50
3701 4017 0.972471 CCCAATCCAAACAGGGGCTC 60.972 60.000 0.00 0.00 37.66 4.70
3716 4032 3.146066 GCACACAGAAAGATACACCCAA 58.854 45.455 0.00 0.00 0.00 4.12
3730 4046 4.118410 GTCAGATATCTTGGAGCACACAG 58.882 47.826 1.33 0.00 0.00 3.66
3741 4057 5.647658 CGGCAGATAGAGAGTCAGATATCTT 59.352 44.000 1.33 0.00 33.70 2.40
3748 4064 0.958091 CCCGGCAGATAGAGAGTCAG 59.042 60.000 0.00 0.00 0.00 3.51
3751 4067 1.112315 CAGCCCGGCAGATAGAGAGT 61.112 60.000 13.15 0.00 0.00 3.24
3767 4083 4.622701 AATTTCAAGAACGATAGCCAGC 57.377 40.909 0.00 0.00 42.67 4.85
3772 4088 9.655769 CATGTCCATTAATTTCAAGAACGATAG 57.344 33.333 0.00 0.00 46.19 2.08
3800 4116 1.092348 GTGAAAACCCCAGCCGATAC 58.908 55.000 0.00 0.00 0.00 2.24
3805 4121 0.178990 AGTGAGTGAAAACCCCAGCC 60.179 55.000 0.00 0.00 0.00 4.85
3806 4122 1.338020 CAAGTGAGTGAAAACCCCAGC 59.662 52.381 0.00 0.00 0.00 4.85
3807 4123 2.618709 GACAAGTGAGTGAAAACCCCAG 59.381 50.000 0.00 0.00 0.00 4.45
3809 4125 2.618709 CTGACAAGTGAGTGAAAACCCC 59.381 50.000 0.00 0.00 0.00 4.95
3810 4126 3.541632 TCTGACAAGTGAGTGAAAACCC 58.458 45.455 0.00 0.00 0.00 4.11
3833 4149 5.032220 GGTACAAAAACGGAAACTGTGAAG 58.968 41.667 0.00 0.00 0.00 3.02
3944 4264 1.269621 CCATCGATCCCGTTACCTGTC 60.270 57.143 0.00 0.00 37.05 3.51
3956 4276 2.511373 TGTGCCGTGCCATCGATC 60.511 61.111 0.00 0.00 0.00 3.69
3968 4288 3.498082 CGCAAACTTATTAAGGTGTGCC 58.502 45.455 16.23 5.99 32.36 5.01
3989 4309 3.683365 ACCCTGAAACAAAATCATGCC 57.317 42.857 0.00 0.00 0.00 4.40
4060 4380 7.042456 TCAGAAAGAAGAAAAACATCGACAGAG 60.042 37.037 0.00 0.00 0.00 3.35
4061 4381 6.761242 TCAGAAAGAAGAAAAACATCGACAGA 59.239 34.615 0.00 0.00 0.00 3.41
4062 4382 6.948353 TCAGAAAGAAGAAAAACATCGACAG 58.052 36.000 0.00 0.00 0.00 3.51
4063 4383 6.918892 TCAGAAAGAAGAAAAACATCGACA 57.081 33.333 0.00 0.00 0.00 4.35
4064 4384 7.910683 AGTTTCAGAAAGAAGAAAAACATCGAC 59.089 33.333 0.00 0.00 37.57 4.20
4065 4385 7.910162 CAGTTTCAGAAAGAAGAAAAACATCGA 59.090 33.333 0.00 0.00 37.57 3.59
4066 4386 7.910162 TCAGTTTCAGAAAGAAGAAAAACATCG 59.090 33.333 0.00 0.00 37.57 3.84
4067 4387 9.573133 TTCAGTTTCAGAAAGAAGAAAAACATC 57.427 29.630 0.00 0.00 37.57 3.06
4554 4878 5.131067 ACGATGAAGGTAGATGCTGTACTA 58.869 41.667 0.00 0.00 0.00 1.82
4555 4879 3.954904 ACGATGAAGGTAGATGCTGTACT 59.045 43.478 0.00 0.00 0.00 2.73
4558 4882 2.223595 CGACGATGAAGGTAGATGCTGT 60.224 50.000 0.00 0.00 0.00 4.40
4561 4885 2.493713 ACGACGATGAAGGTAGATGC 57.506 50.000 0.00 0.00 0.00 3.91
4562 4886 7.527457 TGATATAACGACGATGAAGGTAGATG 58.473 38.462 0.00 0.00 0.00 2.90
4570 4894 6.013842 AGATGCTGATATAACGACGATGAA 57.986 37.500 0.00 0.00 0.00 2.57
4581 4905 7.280876 GTGTCAAGGTTTCAAGATGCTGATATA 59.719 37.037 0.00 0.00 0.00 0.86
4583 4907 5.412594 GTGTCAAGGTTTCAAGATGCTGATA 59.587 40.000 0.00 0.00 0.00 2.15
4588 4912 3.565482 TCAGTGTCAAGGTTTCAAGATGC 59.435 43.478 0.00 0.00 0.00 3.91
4592 4916 4.818546 ACAGATCAGTGTCAAGGTTTCAAG 59.181 41.667 0.00 0.00 0.00 3.02
4594 4918 4.129380 CACAGATCAGTGTCAAGGTTTCA 58.871 43.478 9.95 0.00 34.83 2.69
4663 5003 2.368192 AAGATCCCCGCCATCCCA 60.368 61.111 0.00 0.00 0.00 4.37
4733 5073 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4734 5074 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4735 5075 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4736 5076 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
4737 5077 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
4738 5078 4.648762 ACAGAGAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
4739 5079 4.403752 CACAGAGAGAGAGAGAGAGAGAGA 59.596 50.000 0.00 0.00 0.00 3.10
4740 5080 4.161189 ACACAGAGAGAGAGAGAGAGAGAG 59.839 50.000 0.00 0.00 0.00 3.20
4741 5081 4.096681 ACACAGAGAGAGAGAGAGAGAGA 58.903 47.826 0.00 0.00 0.00 3.10
4742 5082 4.081476 TGACACAGAGAGAGAGAGAGAGAG 60.081 50.000 0.00 0.00 0.00 3.20
4743 5083 3.837731 TGACACAGAGAGAGAGAGAGAGA 59.162 47.826 0.00 0.00 0.00 3.10
4744 5084 3.935203 GTGACACAGAGAGAGAGAGAGAG 59.065 52.174 0.00 0.00 0.00 3.20
4745 5085 3.326297 TGTGACACAGAGAGAGAGAGAGA 59.674 47.826 3.56 0.00 0.00 3.10
4746 5086 3.436704 GTGTGACACAGAGAGAGAGAGAG 59.563 52.174 11.43 0.00 34.08 3.20
4747 5087 3.181450 TGTGTGACACAGAGAGAGAGAGA 60.181 47.826 15.39 0.00 39.62 3.10
4748 5088 3.145286 TGTGTGACACAGAGAGAGAGAG 58.855 50.000 15.39 0.00 39.62 3.20
4749 5089 3.214696 TGTGTGACACAGAGAGAGAGA 57.785 47.619 15.39 0.00 39.62 3.10
4750 5090 3.998099 TTGTGTGACACAGAGAGAGAG 57.002 47.619 18.59 0.00 45.39 3.20
4751 5091 3.701542 AGTTTGTGTGACACAGAGAGAGA 59.298 43.478 18.59 0.00 45.39 3.10
4752 5092 3.801050 CAGTTTGTGTGACACAGAGAGAG 59.199 47.826 18.59 4.77 45.39 3.20
4753 5093 3.785486 CAGTTTGTGTGACACAGAGAGA 58.215 45.455 18.59 0.25 45.39 3.10
4754 5094 2.286294 GCAGTTTGTGTGACACAGAGAG 59.714 50.000 18.59 10.43 45.39 3.20
4755 5095 2.093500 AGCAGTTTGTGTGACACAGAGA 60.093 45.455 18.59 6.48 45.39 3.10
4756 5096 2.031314 CAGCAGTTTGTGTGACACAGAG 59.969 50.000 18.59 10.73 45.39 3.35
4757 5097 2.009051 CAGCAGTTTGTGTGACACAGA 58.991 47.619 18.59 11.91 45.39 3.41
4758 5098 1.532505 GCAGCAGTTTGTGTGACACAG 60.533 52.381 18.59 8.35 45.39 3.66
4759 5099 0.451383 GCAGCAGTTTGTGTGACACA 59.549 50.000 15.39 15.39 43.02 3.72
4760 5100 0.734889 AGCAGCAGTTTGTGTGACAC 59.265 50.000 9.14 9.14 34.56 3.67
4821 5161 7.165812 CGAGTAACTGAAATTGACAAAACAAGG 59.834 37.037 0.00 0.00 33.22 3.61
4958 5303 6.591935 CAAGACAGGGGCTTATCAGTAATTA 58.408 40.000 0.00 0.00 0.00 1.40
4968 5313 2.484287 GGCTGCAAGACAGGGGCTTA 62.484 60.000 0.50 0.00 46.27 3.09
5000 5345 0.450583 GTGTCGACGTCAGCATAGGA 59.549 55.000 17.16 0.00 0.00 2.94
5071 5416 7.201384 GCTTAAATAACAAATCTGCTTGACAGC 60.201 37.037 0.00 0.00 46.76 4.40
5073 5418 7.885297 AGCTTAAATAACAAATCTGCTTGACA 58.115 30.769 0.00 0.00 0.00 3.58
5141 5492 5.177326 ACTGTCGTTAAACCACTGTAAACA 58.823 37.500 0.00 0.00 0.00 2.83
5506 5858 4.392138 GTCAGTTCAGCCATAAGTTGTACC 59.608 45.833 0.00 0.00 28.91 3.34
5516 5868 3.276857 CATGCTAAGTCAGTTCAGCCAT 58.723 45.455 0.00 0.00 32.97 4.40
5532 5884 0.464373 CATAGTTCACCCGGCATGCT 60.464 55.000 18.92 0.00 0.00 3.79
5552 5904 2.374184 CGATCTCAGACCTCTTCCTGT 58.626 52.381 0.00 0.00 0.00 4.00
5565 5917 2.036731 ACGTCCCACCCGATCTCA 59.963 61.111 0.00 0.00 0.00 3.27
5597 5949 1.067142 TGCTGAATGACCCGTAGACAC 60.067 52.381 0.00 0.00 0.00 3.67
5921 6274 8.830201 AATCTATGATGAACAGTGCTAGATTC 57.170 34.615 0.00 0.00 34.63 2.52
5929 6282 7.173907 GGGGTTGATAATCTATGATGAACAGTG 59.826 40.741 0.00 0.00 0.00 3.66
6033 6386 7.575414 TTGCTGAATTCTGGTTTGTTAGTAA 57.425 32.000 13.50 0.00 0.00 2.24
6040 6393 4.685924 ACTGTTTGCTGAATTCTGGTTTG 58.314 39.130 13.50 0.00 0.00 2.93
6375 6745 1.258676 TGAATCTTGCCTGCATTGCA 58.741 45.000 11.50 11.50 36.84 4.08
6499 6869 7.382488 TGAAAATCTGTTTTTGTCGAAACAACA 59.618 29.630 2.34 6.80 45.73 3.33
6525 6895 6.042093 ACGGGATGTTTCAGTGATCAGTATAT 59.958 38.462 1.86 0.00 0.00 0.86
6623 6993 4.202398 TGCTGGTCAATCTCTCAGTCTTTT 60.202 41.667 0.00 0.00 0.00 2.27
6672 7042 5.970592 AGACTTGATCGAAATGATGAGTCA 58.029 37.500 14.94 0.00 43.12 3.41
6753 7123 7.854337 TCTACCGTTTCCTAACCAGAAAATAT 58.146 34.615 0.00 0.00 35.13 1.28
6788 7161 6.434028 TCAGCAAACTGGAAAGCATAATAACT 59.566 34.615 0.00 0.00 44.59 2.24
6849 7226 7.280876 GCATGACAGGAGATTGATTACACTTTA 59.719 37.037 0.00 0.00 0.00 1.85
6850 7227 6.094603 GCATGACAGGAGATTGATTACACTTT 59.905 38.462 0.00 0.00 0.00 2.66
6851 7228 5.587844 GCATGACAGGAGATTGATTACACTT 59.412 40.000 0.00 0.00 0.00 3.16
6867 7244 3.374367 CACTTGAGAAGATGGCATGACAG 59.626 47.826 7.63 0.00 0.00 3.51
6924 7301 4.873010 AGATACACCTGTGAGTACTGGAT 58.127 43.478 0.00 0.00 45.82 3.41
6996 7373 6.030228 GGCAACTAAACTTAGCATAGCTTTG 58.970 40.000 0.00 0.00 40.44 2.77
7364 7746 5.065731 TGTGTGGTTCAAATGGAAAAATTGC 59.934 36.000 0.00 0.00 37.23 3.56
7376 7758 6.944234 TTGTATATGTGTGTGTGGTTCAAA 57.056 33.333 0.00 0.00 0.00 2.69
7449 7833 3.322828 GCGGGTACTCCACATCCTTTATA 59.677 47.826 0.00 0.00 34.36 0.98
7484 8376 2.103340 GCTCTCTTCGCCCTCGAC 59.897 66.667 0.00 0.00 45.43 4.20
7600 8492 2.037641 CACCTGTCATTGACACTCCAGA 59.962 50.000 15.41 0.00 37.67 3.86
7681 9266 2.020131 CCTGATGAGACCATTGCGC 58.980 57.895 0.00 0.00 32.09 6.09
7683 9268 1.105759 GGGCCTGATGAGACCATTGC 61.106 60.000 0.84 0.00 32.09 3.56
7685 9270 1.528824 CGGGCCTGATGAGACCATT 59.471 57.895 5.28 0.00 32.09 3.16
7689 9274 3.474570 AGGCGGGCCTGATGAGAC 61.475 66.667 18.31 0.00 46.22 3.36
7705 9290 4.394712 GGGCGAGGACACCACCAG 62.395 72.222 0.00 0.00 0.00 4.00
7706 9291 4.954118 AGGGCGAGGACACCACCA 62.954 66.667 0.00 0.00 0.00 4.17
7743 9333 1.333177 CGCTCCTAGCCTCCTGTAAT 58.667 55.000 0.00 0.00 38.18 1.89
7745 9335 1.828660 GCGCTCCTAGCCTCCTGTA 60.829 63.158 0.00 0.00 38.18 2.74
7748 9338 4.507916 TCGCGCTCCTAGCCTCCT 62.508 66.667 5.56 0.00 38.18 3.69
7749 9339 3.972276 CTCGCGCTCCTAGCCTCC 61.972 72.222 5.56 0.00 38.18 4.30
7750 9340 4.639171 GCTCGCGCTCCTAGCCTC 62.639 72.222 5.56 0.00 38.18 4.70
7794 9384 0.597568 CACAAAGCAGCCCGAAATGA 59.402 50.000 0.00 0.00 0.00 2.57
7798 9388 3.659092 CGCACAAAGCAGCCCGAA 61.659 61.111 0.00 0.00 46.13 4.30
7821 9411 4.025401 CAAACACGCAGGCCCGAC 62.025 66.667 8.49 0.00 0.00 4.79
7824 9414 3.670377 GGACAAACACGCAGGCCC 61.670 66.667 0.00 0.00 0.00 5.80
7830 9420 4.072088 CGAGCCGGACAAACACGC 62.072 66.667 5.05 0.00 0.00 5.34
7847 9437 1.150081 CATGCATCTCCCAGACCCC 59.850 63.158 0.00 0.00 0.00 4.95
7883 9473 2.334971 GCAAAAATTGTTGCCATGGC 57.665 45.000 30.54 30.54 46.69 4.40
7890 9480 3.560481 TGCCATGACAGCAAAAATTGTTG 59.440 39.130 3.80 3.80 45.86 3.33
7891 9481 3.806380 TGCCATGACAGCAAAAATTGTT 58.194 36.364 0.00 0.00 37.28 2.83
7892 9482 3.472283 TGCCATGACAGCAAAAATTGT 57.528 38.095 0.00 0.00 37.28 2.71
7900 9490 1.340889 GAAACCTTTGCCATGACAGCA 59.659 47.619 0.00 0.00 38.81 4.41
7901 9491 1.340889 TGAAACCTTTGCCATGACAGC 59.659 47.619 0.00 0.00 0.00 4.40
7902 9492 2.029649 CCTGAAACCTTTGCCATGACAG 60.030 50.000 0.00 0.00 0.00 3.51
7903 9493 1.962807 CCTGAAACCTTTGCCATGACA 59.037 47.619 0.00 0.00 0.00 3.58
7904 9494 2.238521 TCCTGAAACCTTTGCCATGAC 58.761 47.619 0.00 0.00 0.00 3.06
7905 9495 2.673775 TCCTGAAACCTTTGCCATGA 57.326 45.000 0.00 0.00 0.00 3.07
7906 9496 3.967332 ATTCCTGAAACCTTTGCCATG 57.033 42.857 0.00 0.00 0.00 3.66
7907 9497 4.463891 CAGTATTCCTGAAACCTTTGCCAT 59.536 41.667 0.00 0.00 44.49 4.40
7908 9498 3.826157 CAGTATTCCTGAAACCTTTGCCA 59.174 43.478 0.00 0.00 44.49 4.92
7909 9499 3.367395 GCAGTATTCCTGAAACCTTTGCC 60.367 47.826 0.00 0.00 44.49 4.52
7910 9500 3.367395 GGCAGTATTCCTGAAACCTTTGC 60.367 47.826 0.00 0.00 44.49 3.68
7911 9501 3.826157 TGGCAGTATTCCTGAAACCTTTG 59.174 43.478 0.00 0.00 44.49 2.77
7912 9502 4.112634 TGGCAGTATTCCTGAAACCTTT 57.887 40.909 0.00 0.00 44.49 3.11
7913 9503 3.806949 TGGCAGTATTCCTGAAACCTT 57.193 42.857 0.00 0.00 44.49 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.