Multiple sequence alignment - TraesCS1D01G420900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G420900 chr1D 100.000 3560 0 0 1 3560 477188031 477191590 0.000000e+00 6575.0
1 TraesCS1D01G420900 chr1D 81.826 1227 194 24 1203 2416 474375316 474376526 0.000000e+00 1003.0
2 TraesCS1D01G420900 chr1A 91.918 2685 113 40 579 3227 573241986 573244602 0.000000e+00 3661.0
3 TraesCS1D01G420900 chr1A 81.189 1228 200 26 1203 2416 568730023 568728813 0.000000e+00 959.0
4 TraesCS1D01G420900 chr1A 88.212 509 29 13 1 492 573241469 573241963 2.380000e-161 579.0
5 TraesCS1D01G420900 chr1B 90.270 2847 134 64 1 2789 664775655 664778416 0.000000e+00 3591.0
6 TraesCS1D01G420900 chr1B 82.248 1228 187 25 1203 2416 659723901 659725111 0.000000e+00 1031.0
7 TraesCS1D01G420900 chr1B 91.549 213 12 4 3004 3216 664778490 664778696 4.500000e-74 289.0
8 TraesCS1D01G420900 chr1B 94.286 70 2 1 2896 2963 664778424 664778493 4.860000e-19 106.0
9 TraesCS1D01G420900 chr7A 82.148 1518 239 28 1015 2518 545934338 545935837 0.000000e+00 1273.0
10 TraesCS1D01G420900 chr7B 82.450 1453 223 24 1057 2499 470836956 470835526 0.000000e+00 1242.0
11 TraesCS1D01G420900 chr7D 82.037 1453 229 25 1057 2499 451187790 451186360 0.000000e+00 1208.0
12 TraesCS1D01G420900 chr7D 73.141 901 207 27 1532 2416 617197737 617198618 1.250000e-74 291.0
13 TraesCS1D01G420900 chr7D 81.250 112 17 4 1203 1312 400942032 400942141 1.760000e-13 87.9
14 TraesCS1D01G420900 chr4A 81.545 699 115 12 1736 2427 62538720 62539411 6.670000e-157 564.0
15 TraesCS1D01G420900 chr3D 81.250 112 17 4 1203 1312 255526273 255526382 1.760000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G420900 chr1D 477188031 477191590 3559 False 6575.000000 6575 100.000 1 3560 1 chr1D.!!$F2 3559
1 TraesCS1D01G420900 chr1D 474375316 474376526 1210 False 1003.000000 1003 81.826 1203 2416 1 chr1D.!!$F1 1213
2 TraesCS1D01G420900 chr1A 573241469 573244602 3133 False 2120.000000 3661 90.065 1 3227 2 chr1A.!!$F1 3226
3 TraesCS1D01G420900 chr1A 568728813 568730023 1210 True 959.000000 959 81.189 1203 2416 1 chr1A.!!$R1 1213
4 TraesCS1D01G420900 chr1B 664775655 664778696 3041 False 1328.666667 3591 92.035 1 3216 3 chr1B.!!$F2 3215
5 TraesCS1D01G420900 chr1B 659723901 659725111 1210 False 1031.000000 1031 82.248 1203 2416 1 chr1B.!!$F1 1213
6 TraesCS1D01G420900 chr7A 545934338 545935837 1499 False 1273.000000 1273 82.148 1015 2518 1 chr7A.!!$F1 1503
7 TraesCS1D01G420900 chr7B 470835526 470836956 1430 True 1242.000000 1242 82.450 1057 2499 1 chr7B.!!$R1 1442
8 TraesCS1D01G420900 chr7D 451186360 451187790 1430 True 1208.000000 1208 82.037 1057 2499 1 chr7D.!!$R1 1442
9 TraesCS1D01G420900 chr7D 617197737 617198618 881 False 291.000000 291 73.141 1532 2416 1 chr7D.!!$F2 884
10 TraesCS1D01G420900 chr4A 62538720 62539411 691 False 564.000000 564 81.545 1736 2427 1 chr4A.!!$F1 691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
231 238 0.239082 ACAAGATCGTGACGTGCGTA 59.761 50.0 15.90 0.0 0.0 4.42 F
1077 1160 0.320421 TCAAGTACGTGAAGCTGGGC 60.320 55.0 9.17 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2218 2307 0.694771 TGCAGGTTGCTCTCCATCTT 59.305 50.0 2.48 0.0 45.31 2.4 R
3021 3138 0.319986 TATGAAGCACACACGCGGAA 60.320 50.0 12.47 0.0 36.85 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 7.096065 TGTCAAATATCGCTTGTTATCTGATCG 60.096 37.037 0.00 0.00 0.00 3.69
143 149 0.746659 CAAGGGATGGAAAATCCGGC 59.253 55.000 0.00 0.00 40.17 6.13
144 150 0.631212 AAGGGATGGAAAATCCGGCT 59.369 50.000 0.00 0.00 40.17 5.52
145 151 1.518367 AGGGATGGAAAATCCGGCTA 58.482 50.000 0.00 0.00 40.17 3.93
146 152 1.143073 AGGGATGGAAAATCCGGCTAC 59.857 52.381 0.00 0.00 40.17 3.58
147 153 1.605753 GGATGGAAAATCCGGCTACC 58.394 55.000 0.00 0.00 40.17 3.18
185 192 4.820744 CCCAACCCCCAGCCATCG 62.821 72.222 0.00 0.00 0.00 3.84
205 212 1.082104 GTGGAAAAACTCTGCGCGG 60.082 57.895 10.86 10.86 0.00 6.46
218 225 4.143333 CGCGGTCGGGGACAAGAT 62.143 66.667 0.00 0.00 33.68 2.40
226 233 1.590147 GGGGACAAGATCGTGACGT 59.410 57.895 15.90 0.00 0.00 4.34
227 234 0.736325 GGGGACAAGATCGTGACGTG 60.736 60.000 15.90 0.00 0.00 4.49
228 235 1.352156 GGGACAAGATCGTGACGTGC 61.352 60.000 15.90 0.00 0.00 5.34
229 236 1.674611 GGACAAGATCGTGACGTGCG 61.675 60.000 15.90 0.00 0.00 5.34
230 237 1.002250 GACAAGATCGTGACGTGCGT 61.002 55.000 15.90 0.00 0.00 5.24
231 238 0.239082 ACAAGATCGTGACGTGCGTA 59.761 50.000 15.90 0.00 0.00 4.42
232 239 0.633733 CAAGATCGTGACGTGCGTAC 59.366 55.000 4.40 0.00 0.00 3.67
233 240 0.455633 AAGATCGTGACGTGCGTACC 60.456 55.000 4.40 0.00 0.00 3.34
349 364 4.465512 GACCAGCGGCATTGCACG 62.466 66.667 11.39 12.39 37.31 5.34
567 590 2.064581 GCATCCCGACCCAGGTAGT 61.065 63.158 0.00 0.00 0.00 2.73
568 591 0.757935 GCATCCCGACCCAGGTAGTA 60.758 60.000 0.00 0.00 0.00 1.82
570 593 0.466922 ATCCCGACCCAGGTAGTACG 60.467 60.000 0.00 0.00 0.00 3.67
571 594 1.379044 CCCGACCCAGGTAGTACGT 60.379 63.158 0.00 0.00 0.00 3.57
574 597 0.652592 CGACCCAGGTAGTACGTACG 59.347 60.000 19.49 15.01 31.59 3.67
575 598 1.739067 GACCCAGGTAGTACGTACGT 58.261 55.000 25.98 25.98 31.59 3.57
624 647 4.470170 CCGTCGCGGTCACGATCA 62.470 66.667 18.89 0.00 45.06 2.92
625 648 3.238241 CGTCGCGGTCACGATCAC 61.238 66.667 12.88 0.00 45.06 3.06
626 649 3.238241 GTCGCGGTCACGATCACG 61.238 66.667 6.13 0.00 45.06 4.35
748 780 4.792068 ACCAATCAACTCAAACTCCTTCA 58.208 39.130 0.00 0.00 0.00 3.02
753 790 5.034852 TCAACTCAAACTCCTTCATGTCA 57.965 39.130 0.00 0.00 0.00 3.58
756 793 4.978099 ACTCAAACTCCTTCATGTCATGT 58.022 39.130 12.54 0.00 0.00 3.21
771 808 3.020274 GTCATGTCTCTGCAGGTCTCTA 58.980 50.000 15.13 0.00 0.00 2.43
774 811 1.636003 TGTCTCTGCAGGTCTCTAGGA 59.364 52.381 15.13 0.00 0.00 2.94
805 864 4.157120 CCGGTCGTCCCATCCCAC 62.157 72.222 0.00 0.00 0.00 4.61
853 912 2.983592 CGGCACACTCCAAACCCC 60.984 66.667 0.00 0.00 0.00 4.95
855 914 1.903404 GGCACACTCCAAACCCCAG 60.903 63.158 0.00 0.00 0.00 4.45
1053 1136 2.804090 GACTTCACGCGGTCGGTC 60.804 66.667 12.47 9.83 40.69 4.79
1077 1160 0.320421 TCAAGTACGTGAAGCTGGGC 60.320 55.000 9.17 0.00 0.00 5.36
1167 1250 0.684535 TCTCCACCTTCACGATGCAA 59.315 50.000 0.00 0.00 0.00 4.08
1473 1556 4.021925 GTGCTCAACCTCCCGCCT 62.022 66.667 0.00 0.00 0.00 5.52
2554 2646 2.124983 CATCCAGCGACACCCAGG 60.125 66.667 0.00 0.00 0.00 4.45
2597 2692 1.712350 CGTACGTCTTTTGGTCGAGTG 59.288 52.381 7.22 0.00 0.00 3.51
2598 2693 2.602933 CGTACGTCTTTTGGTCGAGTGA 60.603 50.000 7.22 0.00 0.00 3.41
2599 2694 2.814280 ACGTCTTTTGGTCGAGTGAT 57.186 45.000 0.00 0.00 0.00 3.06
2600 2695 2.673833 ACGTCTTTTGGTCGAGTGATC 58.326 47.619 0.00 0.00 0.00 2.92
2617 2712 2.875317 TGATCGAGTCTGTAGCTAGCAG 59.125 50.000 18.83 5.80 35.43 4.24
2638 2743 2.281761 CGAGCTGCTTGGGGTTGT 60.282 61.111 9.11 0.00 0.00 3.32
2655 2760 3.057806 GGTTGTGGTTGCATTGGTACTAC 60.058 47.826 0.00 0.00 0.00 2.73
2692 2809 4.861196 AGAGTCAGTCAAGCTAGGTATGA 58.139 43.478 0.00 0.00 0.00 2.15
2779 2896 5.359576 TGTTGATCCTCTAGCTCTTCTTCTC 59.640 44.000 0.00 0.00 0.00 2.87
2789 2906 3.119029 AGCTCTTCTTCTCTCATGTGCTC 60.119 47.826 0.00 0.00 0.00 4.26
2793 2910 3.706802 TCTTCTCTCATGTGCTCGATC 57.293 47.619 0.00 0.00 0.00 3.69
2797 2914 3.220940 TCTCTCATGTGCTCGATCTCAT 58.779 45.455 0.00 0.00 0.00 2.90
2798 2915 3.252944 TCTCTCATGTGCTCGATCTCATC 59.747 47.826 1.07 0.00 0.00 2.92
2799 2916 2.954318 TCTCATGTGCTCGATCTCATCA 59.046 45.455 1.07 0.00 0.00 3.07
2800 2917 3.573110 TCTCATGTGCTCGATCTCATCAT 59.427 43.478 1.07 0.00 0.00 2.45
2801 2918 3.650139 TCATGTGCTCGATCTCATCATG 58.350 45.455 1.07 8.72 34.46 3.07
2802 2919 2.521105 TGTGCTCGATCTCATCATGG 57.479 50.000 0.00 0.00 0.00 3.66
2804 2921 2.631545 TGTGCTCGATCTCATCATGGAT 59.368 45.455 0.00 0.00 0.00 3.41
2805 2922 2.994578 GTGCTCGATCTCATCATGGATG 59.005 50.000 0.00 0.00 41.00 3.51
2806 2923 2.895404 TGCTCGATCTCATCATGGATGA 59.105 45.455 8.48 8.48 45.35 2.92
2807 2924 3.322828 TGCTCGATCTCATCATGGATGAA 59.677 43.478 9.89 2.95 46.51 2.57
2808 2925 4.202284 TGCTCGATCTCATCATGGATGAAA 60.202 41.667 9.89 0.00 46.51 2.69
2809 2926 4.152045 GCTCGATCTCATCATGGATGAAAC 59.848 45.833 9.89 4.39 46.51 2.78
2810 2927 5.280654 TCGATCTCATCATGGATGAAACA 57.719 39.130 9.89 0.00 46.51 2.83
2811 2928 5.861727 TCGATCTCATCATGGATGAAACAT 58.138 37.500 9.89 3.38 46.51 2.71
2813 2930 6.870439 TCGATCTCATCATGGATGAAACATAC 59.130 38.462 9.89 0.00 46.51 2.39
2814 2931 6.872547 CGATCTCATCATGGATGAAACATACT 59.127 38.462 9.89 0.00 46.51 2.12
2815 2932 7.063191 CGATCTCATCATGGATGAAACATACTC 59.937 40.741 9.89 0.00 46.51 2.59
2816 2933 6.528321 TCTCATCATGGATGAAACATACTCC 58.472 40.000 9.89 0.00 46.51 3.85
2817 2934 5.624159 TCATCATGGATGAAACATACTCCC 58.376 41.667 6.45 0.00 44.70 4.30
2819 2936 5.296151 TCATGGATGAAACATACTCCCTC 57.704 43.478 0.00 0.00 33.08 4.30
2821 2938 2.434336 TGGATGAAACATACTCCCTCCG 59.566 50.000 0.00 0.00 0.00 4.63
2823 2940 3.492829 GGATGAAACATACTCCCTCCGTC 60.493 52.174 0.00 0.00 0.00 4.79
2825 2942 3.170717 TGAAACATACTCCCTCCGTCTT 58.829 45.455 0.00 0.00 0.00 3.01
2826 2943 3.581332 TGAAACATACTCCCTCCGTCTTT 59.419 43.478 0.00 0.00 0.00 2.52
2827 2944 4.041198 TGAAACATACTCCCTCCGTCTTTT 59.959 41.667 0.00 0.00 0.00 2.27
2828 2945 4.635699 AACATACTCCCTCCGTCTTTTT 57.364 40.909 0.00 0.00 0.00 1.94
2829 2946 3.939066 ACATACTCCCTCCGTCTTTTTG 58.061 45.455 0.00 0.00 0.00 2.44
2830 2947 3.581332 ACATACTCCCTCCGTCTTTTTGA 59.419 43.478 0.00 0.00 0.00 2.69
2831 2948 2.545537 ACTCCCTCCGTCTTTTTGAC 57.454 50.000 0.00 0.00 42.06 3.18
2832 2949 1.766496 ACTCCCTCCGTCTTTTTGACA 59.234 47.619 0.00 0.00 45.60 3.58
2833 2950 2.143925 CTCCCTCCGTCTTTTTGACAC 58.856 52.381 0.00 0.00 45.60 3.67
2834 2951 1.766496 TCCCTCCGTCTTTTTGACACT 59.234 47.619 0.00 0.00 45.60 3.55
2835 2952 1.873591 CCCTCCGTCTTTTTGACACTG 59.126 52.381 0.00 0.00 45.60 3.66
2846 2963 1.492319 TTGACACTGTACGCGGTTGC 61.492 55.000 12.47 0.00 37.91 4.17
2860 2977 2.027926 GCGGTTGCGATTTATTTGCTTG 59.972 45.455 0.00 0.00 35.56 4.01
2862 2979 3.059306 CGGTTGCGATTTATTTGCTTGTG 59.941 43.478 0.00 0.00 35.56 3.33
2863 2980 3.367630 GGTTGCGATTTATTTGCTTGTGG 59.632 43.478 0.00 0.00 35.56 4.17
2864 2981 4.233789 GTTGCGATTTATTTGCTTGTGGA 58.766 39.130 0.00 0.00 35.56 4.02
2865 2982 4.717233 TGCGATTTATTTGCTTGTGGAT 57.283 36.364 0.00 0.00 35.56 3.41
2866 2983 5.070770 TGCGATTTATTTGCTTGTGGATT 57.929 34.783 0.00 0.00 35.56 3.01
2867 2984 5.477510 TGCGATTTATTTGCTTGTGGATTT 58.522 33.333 0.00 0.00 35.56 2.17
2868 2985 5.576384 TGCGATTTATTTGCTTGTGGATTTC 59.424 36.000 0.00 0.00 35.56 2.17
2869 2986 5.807011 GCGATTTATTTGCTTGTGGATTTCT 59.193 36.000 0.00 0.00 0.00 2.52
2870 2987 6.237648 GCGATTTATTTGCTTGTGGATTTCTG 60.238 38.462 0.00 0.00 0.00 3.02
2871 2988 6.237648 CGATTTATTTGCTTGTGGATTTCTGC 60.238 38.462 0.00 0.00 0.00 4.26
2872 2989 2.420628 TTTGCTTGTGGATTTCTGCG 57.579 45.000 0.00 0.00 0.00 5.18
2873 2990 0.597568 TTGCTTGTGGATTTCTGCGG 59.402 50.000 0.00 0.00 0.00 5.69
2874 2991 0.537143 TGCTTGTGGATTTCTGCGGT 60.537 50.000 0.00 0.00 0.00 5.68
2875 2992 0.598065 GCTTGTGGATTTCTGCGGTT 59.402 50.000 0.00 0.00 0.00 4.44
2973 3090 1.411612 GGAATACGATCGGTCCCTGTT 59.588 52.381 20.98 2.01 0.00 3.16
2977 3094 0.037605 ACGATCGGTCCCTGTTTGTC 60.038 55.000 20.98 0.00 0.00 3.18
2993 3110 3.923645 TCTGTCTGGTCCCGGGGT 61.924 66.667 23.50 0.00 0.00 4.95
3031 3148 1.119635 CACAATGTTTTCCGCGTGTG 58.880 50.000 4.92 6.59 0.00 3.82
3069 3186 0.799917 CTGTCGCTCATCCACTCACG 60.800 60.000 0.00 0.00 0.00 4.35
3108 3225 1.890510 CGTATGCCCGCTTAACCCC 60.891 63.158 0.00 0.00 0.00 4.95
3110 3227 3.760700 TATGCCCGCTTAACCCCGC 62.761 63.158 0.00 0.00 0.00 6.13
3172 3289 3.339539 TTCCATGCATGCGGTTGCG 62.340 57.895 21.69 5.85 45.77 4.85
3223 3341 7.538678 CAGAAACGGATGAACTAAATCAAAAGG 59.461 37.037 0.00 0.00 32.06 3.11
3227 3345 6.151144 ACGGATGAACTAAATCAAAAGGAAGG 59.849 38.462 0.00 0.00 32.06 3.46
3228 3346 6.374333 CGGATGAACTAAATCAAAAGGAAGGA 59.626 38.462 0.00 0.00 32.06 3.36
3229 3347 7.539436 GGATGAACTAAATCAAAAGGAAGGAC 58.461 38.462 0.00 0.00 32.06 3.85
3230 3348 7.176690 GGATGAACTAAATCAAAAGGAAGGACA 59.823 37.037 0.00 0.00 32.06 4.02
3231 3349 8.655935 ATGAACTAAATCAAAAGGAAGGACAT 57.344 30.769 0.00 0.00 32.06 3.06
3232 3350 8.110860 TGAACTAAATCAAAAGGAAGGACATC 57.889 34.615 0.00 0.00 0.00 3.06
3233 3351 7.944554 TGAACTAAATCAAAAGGAAGGACATCT 59.055 33.333 0.00 0.00 0.00 2.90
3234 3352 7.929941 ACTAAATCAAAAGGAAGGACATCTC 57.070 36.000 0.00 0.00 0.00 2.75
3235 3353 6.887002 ACTAAATCAAAAGGAAGGACATCTCC 59.113 38.462 0.00 0.00 36.71 3.71
3236 3354 3.721087 TCAAAAGGAAGGACATCTCCC 57.279 47.619 0.00 0.00 37.25 4.30
3237 3355 3.260205 TCAAAAGGAAGGACATCTCCCT 58.740 45.455 0.00 0.00 37.25 4.20
3238 3356 3.657727 TCAAAAGGAAGGACATCTCCCTT 59.342 43.478 0.00 0.00 46.03 3.95
3242 3360 3.029083 AAGGACATCTCCCTTCCCC 57.971 57.895 0.00 0.00 39.72 4.81
3243 3361 0.423544 AAGGACATCTCCCTTCCCCT 59.576 55.000 0.00 0.00 39.72 4.79
3244 3362 0.030603 AGGACATCTCCCTTCCCCTC 60.031 60.000 0.00 0.00 37.25 4.30
3245 3363 0.030603 GGACATCTCCCTTCCCCTCT 60.031 60.000 0.00 0.00 0.00 3.69
3246 3364 1.419381 GACATCTCCCTTCCCCTCTC 58.581 60.000 0.00 0.00 0.00 3.20
3247 3365 0.719015 ACATCTCCCTTCCCCTCTCA 59.281 55.000 0.00 0.00 0.00 3.27
3248 3366 1.127343 CATCTCCCTTCCCCTCTCAC 58.873 60.000 0.00 0.00 0.00 3.51
3249 3367 1.022903 ATCTCCCTTCCCCTCTCACT 58.977 55.000 0.00 0.00 0.00 3.41
3250 3368 1.695065 TCTCCCTTCCCCTCTCACTA 58.305 55.000 0.00 0.00 0.00 2.74
3251 3369 2.008400 TCTCCCTTCCCCTCTCACTAA 58.992 52.381 0.00 0.00 0.00 2.24
3252 3370 2.385765 TCTCCCTTCCCCTCTCACTAAA 59.614 50.000 0.00 0.00 0.00 1.85
3253 3371 2.502130 CTCCCTTCCCCTCTCACTAAAC 59.498 54.545 0.00 0.00 0.00 2.01
3254 3372 2.113777 TCCCTTCCCCTCTCACTAAACT 59.886 50.000 0.00 0.00 0.00 2.66
3255 3373 2.237392 CCCTTCCCCTCTCACTAAACTG 59.763 54.545 0.00 0.00 0.00 3.16
3256 3374 3.173965 CCTTCCCCTCTCACTAAACTGA 58.826 50.000 0.00 0.00 0.00 3.41
3257 3375 3.055747 CCTTCCCCTCTCACTAAACTGAC 60.056 52.174 0.00 0.00 0.00 3.51
3258 3376 2.168496 TCCCCTCTCACTAAACTGACG 58.832 52.381 0.00 0.00 0.00 4.35
3259 3377 1.204941 CCCCTCTCACTAAACTGACGG 59.795 57.143 0.00 0.00 0.00 4.79
3260 3378 1.404315 CCCTCTCACTAAACTGACGGC 60.404 57.143 0.00 0.00 0.00 5.68
3261 3379 1.546476 CCTCTCACTAAACTGACGGCT 59.454 52.381 0.00 0.00 0.00 5.52
3262 3380 2.753452 CCTCTCACTAAACTGACGGCTA 59.247 50.000 0.00 0.00 0.00 3.93
3263 3381 3.181495 CCTCTCACTAAACTGACGGCTAG 60.181 52.174 0.00 0.00 0.00 3.42
3264 3382 2.753452 TCTCACTAAACTGACGGCTAGG 59.247 50.000 0.00 0.00 0.00 3.02
3265 3383 1.203994 TCACTAAACTGACGGCTAGGC 59.796 52.381 6.15 6.15 0.00 3.93
3266 3384 0.535797 ACTAAACTGACGGCTAGGCC 59.464 55.000 11.22 0.00 46.75 5.19
3277 3395 3.052181 GCTAGGCCAAGAACTCGTC 57.948 57.895 5.01 0.00 0.00 4.20
3278 3396 0.460459 GCTAGGCCAAGAACTCGTCC 60.460 60.000 5.01 0.00 0.00 4.79
3279 3397 1.187087 CTAGGCCAAGAACTCGTCCT 58.813 55.000 5.01 0.00 0.00 3.85
3280 3398 1.135333 CTAGGCCAAGAACTCGTCCTC 59.865 57.143 5.01 0.00 0.00 3.71
3281 3399 0.543174 AGGCCAAGAACTCGTCCTCT 60.543 55.000 5.01 0.00 0.00 3.69
3282 3400 0.321996 GGCCAAGAACTCGTCCTCTT 59.678 55.000 0.00 0.00 31.99 2.85
3283 3401 1.673329 GGCCAAGAACTCGTCCTCTTC 60.673 57.143 0.00 0.00 29.29 2.87
3284 3402 1.000955 GCCAAGAACTCGTCCTCTTCA 59.999 52.381 0.00 0.00 29.29 3.02
3285 3403 2.548067 GCCAAGAACTCGTCCTCTTCAA 60.548 50.000 0.00 0.00 29.29 2.69
3286 3404 3.321497 CCAAGAACTCGTCCTCTTCAAG 58.679 50.000 0.00 0.00 29.29 3.02
3287 3405 2.734079 CAAGAACTCGTCCTCTTCAAGC 59.266 50.000 0.00 0.00 29.29 4.01
3288 3406 2.243810 AGAACTCGTCCTCTTCAAGCT 58.756 47.619 0.00 0.00 0.00 3.74
3289 3407 2.230266 AGAACTCGTCCTCTTCAAGCTC 59.770 50.000 0.00 0.00 0.00 4.09
3290 3408 0.892063 ACTCGTCCTCTTCAAGCTCC 59.108 55.000 0.00 0.00 0.00 4.70
3291 3409 0.891373 CTCGTCCTCTTCAAGCTCCA 59.109 55.000 0.00 0.00 0.00 3.86
3292 3410 1.480137 CTCGTCCTCTTCAAGCTCCAT 59.520 52.381 0.00 0.00 0.00 3.41
3293 3411 1.478510 TCGTCCTCTTCAAGCTCCATC 59.521 52.381 0.00 0.00 0.00 3.51
3294 3412 1.800655 CGTCCTCTTCAAGCTCCATCG 60.801 57.143 0.00 0.00 0.00 3.84
3295 3413 1.205893 GTCCTCTTCAAGCTCCATCGT 59.794 52.381 0.00 0.00 0.00 3.73
3296 3414 1.902508 TCCTCTTCAAGCTCCATCGTT 59.097 47.619 0.00 0.00 0.00 3.85
3297 3415 2.005451 CCTCTTCAAGCTCCATCGTTG 58.995 52.381 0.00 0.00 0.00 4.10
3298 3416 2.354103 CCTCTTCAAGCTCCATCGTTGA 60.354 50.000 0.00 0.00 0.00 3.18
3299 3417 2.928757 CTCTTCAAGCTCCATCGTTGAG 59.071 50.000 0.00 0.00 32.00 3.02
3305 3423 2.699073 CTCCATCGTTGAGCCCATG 58.301 57.895 0.00 0.00 0.00 3.66
3306 3424 0.816825 CTCCATCGTTGAGCCCATGG 60.817 60.000 4.14 4.14 37.70 3.66
3307 3425 1.224315 CCATCGTTGAGCCCATGGA 59.776 57.895 15.22 0.00 38.52 3.41
3308 3426 0.179009 CCATCGTTGAGCCCATGGAT 60.179 55.000 15.22 0.05 38.52 3.41
3309 3427 1.683943 CATCGTTGAGCCCATGGATT 58.316 50.000 15.22 0.00 0.00 3.01
3310 3428 1.335810 CATCGTTGAGCCCATGGATTG 59.664 52.381 15.22 0.00 0.00 2.67
3311 3429 0.327924 TCGTTGAGCCCATGGATTGT 59.672 50.000 15.22 0.00 0.00 2.71
3312 3430 0.734889 CGTTGAGCCCATGGATTGTC 59.265 55.000 15.22 4.49 0.00 3.18
3313 3431 1.679944 CGTTGAGCCCATGGATTGTCT 60.680 52.381 15.22 1.59 0.00 3.41
3314 3432 2.450476 GTTGAGCCCATGGATTGTCTT 58.550 47.619 15.22 0.00 0.00 3.01
3315 3433 2.827921 GTTGAGCCCATGGATTGTCTTT 59.172 45.455 15.22 0.00 0.00 2.52
3316 3434 2.726821 TGAGCCCATGGATTGTCTTTC 58.273 47.619 15.22 0.00 0.00 2.62
3317 3435 2.027385 GAGCCCATGGATTGTCTTTCC 58.973 52.381 15.22 0.00 0.00 3.13
3318 3436 1.642762 AGCCCATGGATTGTCTTTCCT 59.357 47.619 15.22 0.00 34.17 3.36
3319 3437 2.027385 GCCCATGGATTGTCTTTCCTC 58.973 52.381 15.22 0.00 34.17 3.71
3320 3438 2.357569 GCCCATGGATTGTCTTTCCTCT 60.358 50.000 15.22 0.00 34.17 3.69
3321 3439 3.285484 CCCATGGATTGTCTTTCCTCTG 58.715 50.000 15.22 0.00 34.17 3.35
3322 3440 2.686915 CCATGGATTGTCTTTCCTCTGC 59.313 50.000 5.56 0.00 34.17 4.26
3323 3441 2.496899 TGGATTGTCTTTCCTCTGCC 57.503 50.000 0.00 0.00 34.17 4.85
3324 3442 1.988107 TGGATTGTCTTTCCTCTGCCT 59.012 47.619 0.00 0.00 34.17 4.75
3325 3443 2.290514 TGGATTGTCTTTCCTCTGCCTG 60.291 50.000 0.00 0.00 34.17 4.85
3326 3444 1.742268 GATTGTCTTTCCTCTGCCTGC 59.258 52.381 0.00 0.00 0.00 4.85
3327 3445 0.250901 TTGTCTTTCCTCTGCCTGCC 60.251 55.000 0.00 0.00 0.00 4.85
3328 3446 1.743252 GTCTTTCCTCTGCCTGCCG 60.743 63.158 0.00 0.00 0.00 5.69
3329 3447 3.130160 CTTTCCTCTGCCTGCCGC 61.130 66.667 0.00 0.00 38.31 6.53
3330 3448 3.618780 CTTTCCTCTGCCTGCCGCT 62.619 63.158 0.00 0.00 38.78 5.52
3331 3449 3.196207 TTTCCTCTGCCTGCCGCTT 62.196 57.895 0.00 0.00 38.78 4.68
3332 3450 3.612247 TTCCTCTGCCTGCCGCTTC 62.612 63.158 0.00 0.00 38.78 3.86
3351 3469 4.436998 GTGACCGGTGGCGAGGAG 62.437 72.222 14.63 0.00 0.00 3.69
3356 3474 3.068691 CGGTGGCGAGGAGGAGAA 61.069 66.667 0.00 0.00 0.00 2.87
3357 3475 2.427245 CGGTGGCGAGGAGGAGAAT 61.427 63.158 0.00 0.00 0.00 2.40
3358 3476 1.443828 GGTGGCGAGGAGGAGAATC 59.556 63.158 0.00 0.00 0.00 2.52
3369 3487 4.719997 GAGAATCCTGACGCCTCG 57.280 61.111 0.00 0.00 0.00 4.63
3370 3488 2.107705 GAGAATCCTGACGCCTCGA 58.892 57.895 0.00 0.00 0.00 4.04
3371 3489 0.248702 GAGAATCCTGACGCCTCGAC 60.249 60.000 0.00 0.00 0.00 4.20
3372 3490 0.681564 AGAATCCTGACGCCTCGACT 60.682 55.000 0.00 0.00 0.00 4.18
3373 3491 0.173708 GAATCCTGACGCCTCGACTT 59.826 55.000 0.00 0.00 0.00 3.01
3374 3492 0.173708 AATCCTGACGCCTCGACTTC 59.826 55.000 0.00 0.00 0.00 3.01
3375 3493 1.994507 ATCCTGACGCCTCGACTTCG 61.995 60.000 0.00 0.00 41.45 3.79
3377 3495 1.512310 CTGACGCCTCGACTTCGAC 60.512 63.158 0.00 0.00 44.22 4.20
3378 3496 1.913451 CTGACGCCTCGACTTCGACT 61.913 60.000 0.00 0.00 44.22 4.18
3379 3497 0.671472 TGACGCCTCGACTTCGACTA 60.671 55.000 0.00 0.00 44.22 2.59
3380 3498 0.026544 GACGCCTCGACTTCGACTAG 59.973 60.000 0.00 0.00 44.22 2.57
3381 3499 0.673022 ACGCCTCGACTTCGACTAGT 60.673 55.000 0.00 0.00 44.22 2.57
3382 3500 1.284657 CGCCTCGACTTCGACTAGTA 58.715 55.000 0.00 0.00 44.22 1.82
3383 3501 1.258458 CGCCTCGACTTCGACTAGTAG 59.742 57.143 0.00 0.00 44.22 2.57
3384 3502 2.278854 GCCTCGACTTCGACTAGTAGT 58.721 52.381 1.37 1.37 44.22 2.73
3385 3503 2.677337 GCCTCGACTTCGACTAGTAGTT 59.323 50.000 3.85 0.00 44.22 2.24
3386 3504 3.126686 GCCTCGACTTCGACTAGTAGTTT 59.873 47.826 3.85 0.00 44.22 2.66
3387 3505 4.331168 GCCTCGACTTCGACTAGTAGTTTA 59.669 45.833 3.85 0.00 44.22 2.01
3388 3506 5.502220 GCCTCGACTTCGACTAGTAGTTTAG 60.502 48.000 3.85 5.19 44.22 1.85
3389 3507 5.006552 CCTCGACTTCGACTAGTAGTTTAGG 59.993 48.000 3.85 3.75 44.22 2.69
3390 3508 5.482908 TCGACTTCGACTAGTAGTTTAGGT 58.517 41.667 3.85 2.55 44.22 3.08
3391 3509 6.631016 TCGACTTCGACTAGTAGTTTAGGTA 58.369 40.000 3.85 0.00 44.22 3.08
3392 3510 7.097192 TCGACTTCGACTAGTAGTTTAGGTAA 58.903 38.462 3.85 0.00 44.22 2.85
3393 3511 7.766278 TCGACTTCGACTAGTAGTTTAGGTAAT 59.234 37.037 3.85 0.00 44.22 1.89
3394 3512 8.394121 CGACTTCGACTAGTAGTTTAGGTAATT 58.606 37.037 3.85 0.00 43.02 1.40
3419 3537 1.609208 TTTCAAGTCCTTGCAGAGGC 58.391 50.000 9.35 5.93 45.87 4.70
3420 3538 0.603707 TTCAAGTCCTTGCAGAGGCG 60.604 55.000 9.35 0.00 45.87 5.52
3421 3539 2.037136 CAAGTCCTTGCAGAGGCGG 61.037 63.158 9.35 0.00 45.87 6.13
3422 3540 3.259633 AAGTCCTTGCAGAGGCGGG 62.260 63.158 9.35 0.00 45.87 6.13
3423 3541 4.785453 GTCCTTGCAGAGGCGGGG 62.785 72.222 9.35 0.00 45.87 5.73
3426 3544 4.729918 CTTGCAGAGGCGGGGCTT 62.730 66.667 0.00 0.00 45.35 4.35
3447 3565 2.813474 CGGATGGTCGCGCTTCAA 60.813 61.111 5.56 0.00 0.00 2.69
3448 3566 2.785258 GGATGGTCGCGCTTCAAC 59.215 61.111 5.56 0.00 0.00 3.18
3449 3567 2.032634 GGATGGTCGCGCTTCAACA 61.033 57.895 5.56 0.00 0.00 3.33
3450 3568 1.369091 GGATGGTCGCGCTTCAACAT 61.369 55.000 5.56 3.11 0.00 2.71
3451 3569 0.026803 GATGGTCGCGCTTCAACATC 59.973 55.000 5.56 9.44 0.00 3.06
3452 3570 1.695893 ATGGTCGCGCTTCAACATCG 61.696 55.000 5.56 0.00 0.00 3.84
3453 3571 2.092291 GGTCGCGCTTCAACATCGA 61.092 57.895 5.56 0.00 0.00 3.59
3454 3572 1.057361 GTCGCGCTTCAACATCGAC 59.943 57.895 5.56 0.00 41.80 4.20
3455 3573 1.080772 TCGCGCTTCAACATCGACT 60.081 52.632 5.56 0.00 0.00 4.18
3456 3574 0.666274 TCGCGCTTCAACATCGACTT 60.666 50.000 5.56 0.00 0.00 3.01
3457 3575 0.163788 CGCGCTTCAACATCGACTTT 59.836 50.000 5.56 0.00 0.00 2.66
3458 3576 1.398451 CGCGCTTCAACATCGACTTTT 60.398 47.619 5.56 0.00 0.00 2.27
3459 3577 2.650608 GCGCTTCAACATCGACTTTTT 58.349 42.857 0.00 0.00 0.00 1.94
3460 3578 2.652172 GCGCTTCAACATCGACTTTTTC 59.348 45.455 0.00 0.00 0.00 2.29
3461 3579 3.607078 GCGCTTCAACATCGACTTTTTCT 60.607 43.478 0.00 0.00 0.00 2.52
3462 3580 4.377022 GCGCTTCAACATCGACTTTTTCTA 60.377 41.667 0.00 0.00 0.00 2.10
3463 3581 5.073478 CGCTTCAACATCGACTTTTTCTAC 58.927 41.667 0.00 0.00 0.00 2.59
3464 3582 5.333035 CGCTTCAACATCGACTTTTTCTACA 60.333 40.000 0.00 0.00 0.00 2.74
3465 3583 6.427150 GCTTCAACATCGACTTTTTCTACAA 58.573 36.000 0.00 0.00 0.00 2.41
3466 3584 6.357240 GCTTCAACATCGACTTTTTCTACAAC 59.643 38.462 0.00 0.00 0.00 3.32
3467 3585 6.912203 TCAACATCGACTTTTTCTACAACA 57.088 33.333 0.00 0.00 0.00 3.33
3468 3586 7.310072 TCAACATCGACTTTTTCTACAACAA 57.690 32.000 0.00 0.00 0.00 2.83
3469 3587 7.184106 TCAACATCGACTTTTTCTACAACAAC 58.816 34.615 0.00 0.00 0.00 3.32
3470 3588 5.734311 ACATCGACTTTTTCTACAACAACG 58.266 37.500 0.00 0.00 0.00 4.10
3471 3589 5.292589 ACATCGACTTTTTCTACAACAACGT 59.707 36.000 0.00 0.00 0.00 3.99
3472 3590 5.379757 TCGACTTTTTCTACAACAACGTC 57.620 39.130 0.00 0.00 0.00 4.34
3473 3591 5.104374 TCGACTTTTTCTACAACAACGTCT 58.896 37.500 0.00 0.00 0.00 4.18
3474 3592 5.230726 TCGACTTTTTCTACAACAACGTCTC 59.769 40.000 0.00 0.00 0.00 3.36
3475 3593 5.231568 CGACTTTTTCTACAACAACGTCTCT 59.768 40.000 0.00 0.00 0.00 3.10
3476 3594 6.415867 CGACTTTTTCTACAACAACGTCTCTA 59.584 38.462 0.00 0.00 0.00 2.43
3477 3595 7.460751 ACTTTTTCTACAACAACGTCTCTAC 57.539 36.000 0.00 0.00 0.00 2.59
3493 3611 6.551812 GTCTCTACGAAAGAATAAACGTCC 57.448 41.667 0.00 0.00 39.59 4.79
3494 3612 6.320944 GTCTCTACGAAAGAATAAACGTCCT 58.679 40.000 0.00 0.00 39.59 3.85
3495 3613 6.468637 GTCTCTACGAAAGAATAAACGTCCTC 59.531 42.308 0.00 0.00 39.59 3.71
3496 3614 6.149973 TCTCTACGAAAGAATAAACGTCCTCA 59.850 38.462 0.00 0.00 39.59 3.86
3497 3615 6.088824 TCTACGAAAGAATAAACGTCCTCAC 58.911 40.000 0.00 0.00 39.59 3.51
3498 3616 8.811083 CTCTACGAAAGAATAAACGTCCTCACG 61.811 44.444 0.00 0.00 42.26 4.35
3506 3624 4.361827 CGTCCTCACGTCATCGAC 57.638 61.111 0.00 0.00 41.42 4.20
3515 3633 2.202932 GTCATCGACGCCATGCCT 60.203 61.111 0.00 0.00 0.00 4.75
3516 3634 2.202919 TCATCGACGCCATGCCTG 60.203 61.111 0.00 0.00 0.00 4.85
3517 3635 3.274586 CATCGACGCCATGCCTGG 61.275 66.667 3.22 3.22 46.17 4.45
3518 3636 3.469970 ATCGACGCCATGCCTGGA 61.470 61.111 12.80 0.00 46.37 3.86
3519 3637 3.740128 ATCGACGCCATGCCTGGAC 62.740 63.158 12.80 2.46 46.37 4.02
3523 3641 4.776322 CGCCATGCCTGGACGGAA 62.776 66.667 12.80 0.00 46.37 4.30
3524 3642 2.124151 GCCATGCCTGGACGGAAT 60.124 61.111 12.80 0.00 46.37 3.01
3526 3644 3.831883 CATGCCTGGACGGAATGG 58.168 61.111 0.00 0.00 44.18 3.16
3527 3645 2.124151 ATGCCTGGACGGAATGGC 60.124 61.111 0.00 0.00 45.10 4.40
3528 3646 3.721370 ATGCCTGGACGGAATGGCC 62.721 63.158 0.00 0.00 44.32 5.36
3529 3647 4.115199 GCCTGGACGGAATGGCCT 62.115 66.667 3.32 0.00 39.49 5.19
3530 3648 2.124570 CCTGGACGGAATGGCCTG 60.125 66.667 3.32 0.00 33.16 4.85
3531 3649 2.124570 CTGGACGGAATGGCCTGG 60.125 66.667 3.32 0.00 0.00 4.45
3532 3650 2.609299 TGGACGGAATGGCCTGGA 60.609 61.111 3.32 0.00 0.00 3.86
3533 3651 2.124695 GGACGGAATGGCCTGGAC 60.125 66.667 3.32 0.00 0.00 4.02
3534 3652 2.668632 GACGGAATGGCCTGGACA 59.331 61.111 3.79 3.79 0.00 4.02
3535 3653 1.002624 GACGGAATGGCCTGGACAA 60.003 57.895 6.20 0.00 0.00 3.18
3536 3654 0.608035 GACGGAATGGCCTGGACAAA 60.608 55.000 6.20 0.00 0.00 2.83
3537 3655 0.609131 ACGGAATGGCCTGGACAAAG 60.609 55.000 6.20 0.37 0.00 2.77
3538 3656 0.322456 CGGAATGGCCTGGACAAAGA 60.322 55.000 6.20 0.00 0.00 2.52
3539 3657 1.683011 CGGAATGGCCTGGACAAAGAT 60.683 52.381 6.20 0.00 0.00 2.40
3540 3658 2.460669 GGAATGGCCTGGACAAAGATT 58.539 47.619 6.20 0.00 0.00 2.40
3541 3659 2.833943 GGAATGGCCTGGACAAAGATTT 59.166 45.455 6.20 0.00 0.00 2.17
3542 3660 3.261643 GGAATGGCCTGGACAAAGATTTT 59.738 43.478 6.20 0.00 0.00 1.82
3543 3661 4.498241 GAATGGCCTGGACAAAGATTTTC 58.502 43.478 6.20 0.07 0.00 2.29
3544 3662 2.956132 TGGCCTGGACAAAGATTTTCA 58.044 42.857 0.00 0.00 0.00 2.69
3545 3663 3.509442 TGGCCTGGACAAAGATTTTCAT 58.491 40.909 0.00 0.00 0.00 2.57
3546 3664 3.511146 TGGCCTGGACAAAGATTTTCATC 59.489 43.478 0.00 0.00 0.00 2.92
3547 3665 3.766051 GGCCTGGACAAAGATTTTCATCT 59.234 43.478 0.00 0.00 42.05 2.90
3557 3675 4.301072 AGATTTTCATCTTGGTTCCGGA 57.699 40.909 0.00 0.00 36.18 5.14
3558 3676 4.265073 AGATTTTCATCTTGGTTCCGGAG 58.735 43.478 3.34 0.00 36.18 4.63
3559 3677 3.780804 TTTTCATCTTGGTTCCGGAGA 57.219 42.857 3.34 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 3.920412 GTGAAAAACCTGGATGATTTCGC 59.080 43.478 0.00 8.12 34.58 4.70
98 104 2.100631 CGAACCTGCATGGACGGAC 61.101 63.158 8.91 3.47 39.71 4.79
104 110 2.401766 GCTGACCGAACCTGCATGG 61.402 63.158 0.00 0.00 42.93 3.66
147 153 4.073200 GTGGGGTGTCCGGTACCG 62.073 72.222 27.68 27.68 39.14 4.02
148 154 3.709633 GGTGGGGTGTCCGGTACC 61.710 72.222 18.51 18.51 38.76 3.34
182 189 0.517316 GCAGAGTTTTTCCACGCGAT 59.483 50.000 15.93 0.00 0.00 4.58
185 192 1.725973 GCGCAGAGTTTTTCCACGC 60.726 57.895 0.30 0.00 41.44 5.34
205 212 0.458025 GTCACGATCTTGTCCCCGAC 60.458 60.000 0.00 0.00 0.00 4.79
218 225 2.253154 CAGGTACGCACGTCACGA 59.747 61.111 2.91 0.00 0.00 4.35
416 435 2.815211 CGGCATGGTGACCACGAG 60.815 66.667 6.40 0.64 35.80 4.18
594 617 2.029964 GACGGGCACGAGGAAACA 59.970 61.111 19.19 0.00 44.60 2.83
748 780 2.168106 GAGACCTGCAGAGACATGACAT 59.832 50.000 17.39 0.00 0.00 3.06
753 790 2.243478 TCCTAGAGACCTGCAGAGACAT 59.757 50.000 17.39 0.26 0.00 3.06
756 793 3.295093 CAATCCTAGAGACCTGCAGAGA 58.705 50.000 17.39 0.00 0.00 3.10
805 864 4.515404 GCCGCGGGCTTATATAGG 57.485 61.111 29.38 0.00 46.69 2.57
853 912 2.747855 GGTTTCGCTCTGGGGCTG 60.748 66.667 0.00 0.00 0.00 4.85
928 1002 1.815421 CGCAAAGATCGTCTGGGGG 60.815 63.158 0.00 0.00 0.00 5.40
929 1003 0.673644 AACGCAAAGATCGTCTGGGG 60.674 55.000 11.51 3.29 39.48 4.96
930 1004 0.443869 CAACGCAAAGATCGTCTGGG 59.556 55.000 7.08 7.08 39.48 4.45
931 1005 0.179215 GCAACGCAAAGATCGTCTGG 60.179 55.000 0.00 0.00 39.48 3.86
932 1006 0.179215 GGCAACGCAAAGATCGTCTG 60.179 55.000 0.00 0.00 39.48 3.51
933 1007 0.602638 TGGCAACGCAAAGATCGTCT 60.603 50.000 0.00 0.00 39.48 4.18
1053 1136 2.156504 CAGCTTCACGTACTTGAGCTTG 59.843 50.000 17.53 12.16 31.61 4.01
1077 1160 1.749063 TGCGTGATCAGGTAGTGGTAG 59.251 52.381 16.27 0.00 0.00 3.18
1167 1250 2.681778 CAGAGGTCGGCCAGGTCT 60.682 66.667 9.71 0.00 37.19 3.85
1473 1556 1.694856 GTTGGCCATGGAGGGGTTA 59.305 57.895 18.40 0.00 38.09 2.85
1500 1583 2.364842 ATGACCAGCTCGGCCTCT 60.365 61.111 0.00 0.00 39.03 3.69
2218 2307 0.694771 TGCAGGTTGCTCTCCATCTT 59.305 50.000 2.48 0.00 45.31 2.40
2554 2646 2.103263 ACGTGGCTCTGGATCCTTATTC 59.897 50.000 14.23 0.80 0.00 1.75
2597 2692 2.875933 ACTGCTAGCTACAGACTCGATC 59.124 50.000 22.25 0.00 38.55 3.69
2598 2693 2.925724 ACTGCTAGCTACAGACTCGAT 58.074 47.619 22.25 4.21 38.55 3.59
2599 2694 2.404923 ACTGCTAGCTACAGACTCGA 57.595 50.000 22.25 0.00 38.55 4.04
2600 2695 2.032377 GCTACTGCTAGCTACAGACTCG 60.032 54.545 22.25 12.11 42.11 4.18
2633 2738 1.960689 AGTACCAATGCAACCACAACC 59.039 47.619 0.00 0.00 0.00 3.77
2634 2739 3.818773 AGTAGTACCAATGCAACCACAAC 59.181 43.478 0.00 0.00 0.00 3.32
2638 2743 5.396324 CCAGATAGTAGTACCAATGCAACCA 60.396 44.000 0.00 0.00 0.00 3.67
2655 2760 5.373222 ACTGACTCTACTGCTACCAGATAG 58.627 45.833 0.00 0.00 41.77 2.08
2692 2809 6.634889 ATGGCAAACCCCAACTAAATTAAT 57.365 33.333 0.00 0.00 38.61 1.40
2779 2896 3.366440 TGATGAGATCGAGCACATGAG 57.634 47.619 18.22 0.00 0.00 2.90
2797 2914 4.103153 GGAGGGAGTATGTTTCATCCATGA 59.897 45.833 0.00 0.00 33.24 3.07
2798 2915 4.392940 GGAGGGAGTATGTTTCATCCATG 58.607 47.826 0.00 0.00 33.24 3.66
2799 2916 3.071602 CGGAGGGAGTATGTTTCATCCAT 59.928 47.826 0.00 0.00 33.24 3.41
2800 2917 2.434336 CGGAGGGAGTATGTTTCATCCA 59.566 50.000 0.00 0.00 33.24 3.41
2801 2918 2.434702 ACGGAGGGAGTATGTTTCATCC 59.565 50.000 0.00 0.00 0.00 3.51
2802 2919 3.385111 AGACGGAGGGAGTATGTTTCATC 59.615 47.826 0.00 0.00 0.00 2.92
2804 2921 2.816411 AGACGGAGGGAGTATGTTTCA 58.184 47.619 0.00 0.00 0.00 2.69
2805 2922 3.889520 AAGACGGAGGGAGTATGTTTC 57.110 47.619 0.00 0.00 0.00 2.78
2806 2923 4.635699 AAAAGACGGAGGGAGTATGTTT 57.364 40.909 0.00 0.00 0.00 2.83
2807 2924 4.041198 TCAAAAAGACGGAGGGAGTATGTT 59.959 41.667 0.00 0.00 0.00 2.71
2808 2925 3.581332 TCAAAAAGACGGAGGGAGTATGT 59.419 43.478 0.00 0.00 0.00 2.29
2809 2926 3.933332 GTCAAAAAGACGGAGGGAGTATG 59.067 47.826 0.00 0.00 37.53 2.39
2810 2927 4.203654 GTCAAAAAGACGGAGGGAGTAT 57.796 45.455 0.00 0.00 37.53 2.12
2811 2928 3.672767 GTCAAAAAGACGGAGGGAGTA 57.327 47.619 0.00 0.00 37.53 2.59
2823 2940 1.595794 ACCGCGTACAGTGTCAAAAAG 59.404 47.619 4.92 0.00 0.00 2.27
2825 2942 1.328069 CAACCGCGTACAGTGTCAAAA 59.672 47.619 4.92 0.00 0.00 2.44
2826 2943 0.931702 CAACCGCGTACAGTGTCAAA 59.068 50.000 4.92 0.00 0.00 2.69
2827 2944 1.492319 GCAACCGCGTACAGTGTCAA 61.492 55.000 4.92 0.00 0.00 3.18
2828 2945 1.952133 GCAACCGCGTACAGTGTCA 60.952 57.895 4.92 0.00 0.00 3.58
2829 2946 2.851104 GCAACCGCGTACAGTGTC 59.149 61.111 4.92 0.00 0.00 3.67
2846 2963 6.237648 GCAGAAATCCACAAGCAAATAAATCG 60.238 38.462 0.00 0.00 0.00 3.34
2852 2969 2.353011 CCGCAGAAATCCACAAGCAAAT 60.353 45.455 0.00 0.00 0.00 2.32
2854 2971 0.597568 CCGCAGAAATCCACAAGCAA 59.402 50.000 0.00 0.00 0.00 3.91
2855 2972 0.537143 ACCGCAGAAATCCACAAGCA 60.537 50.000 0.00 0.00 0.00 3.91
2857 2974 2.159707 CGTAACCGCAGAAATCCACAAG 60.160 50.000 0.00 0.00 0.00 3.16
2860 2977 1.435577 ACGTAACCGCAGAAATCCAC 58.564 50.000 0.00 0.00 37.70 4.02
2862 2979 3.181517 GGTTTACGTAACCGCAGAAATCC 60.182 47.826 7.70 0.00 46.48 3.01
2863 2980 3.994789 GGTTTACGTAACCGCAGAAATC 58.005 45.455 7.70 0.00 46.48 2.17
2873 2990 3.423206 CGTCTCAGTGTGGTTTACGTAAC 59.577 47.826 7.70 3.57 35.94 2.50
2874 2991 3.066621 ACGTCTCAGTGTGGTTTACGTAA 59.933 43.478 3.29 3.29 39.98 3.18
2875 2992 2.618241 ACGTCTCAGTGTGGTTTACGTA 59.382 45.455 7.70 0.00 39.98 3.57
2888 3005 2.719556 CGTAAACACAGTCACGTCTCAG 59.280 50.000 0.00 0.00 0.00 3.35
2954 3071 2.864343 CAAACAGGGACCGATCGTATTC 59.136 50.000 15.09 7.19 0.00 1.75
2973 3090 2.214216 CCCGGGACCAGACAGACAA 61.214 63.158 18.48 0.00 0.00 3.18
2977 3094 3.391382 GACCCCGGGACCAGACAG 61.391 72.222 26.32 4.48 0.00 3.51
3021 3138 0.319986 TATGAAGCACACACGCGGAA 60.320 50.000 12.47 0.00 36.85 4.30
3031 3148 1.667724 AGCATCGCAAGTATGAAGCAC 59.332 47.619 0.00 0.00 39.48 4.40
3069 3186 3.704231 ATGTGCATGGACGGAGGGC 62.704 63.158 13.03 0.00 0.00 5.19
3108 3225 5.639506 TCTTTAGATCAAGAACTTTCAGGCG 59.360 40.000 0.00 0.00 29.41 5.52
3172 3289 2.256117 ACAGTCAACAGTTAGGCACC 57.744 50.000 0.00 0.00 0.00 5.01
3227 3345 1.343478 TGAGAGGGGAAGGGAGATGTC 60.343 57.143 0.00 0.00 0.00 3.06
3228 3346 0.719015 TGAGAGGGGAAGGGAGATGT 59.281 55.000 0.00 0.00 0.00 3.06
3229 3347 1.127343 GTGAGAGGGGAAGGGAGATG 58.873 60.000 0.00 0.00 0.00 2.90
3230 3348 1.022903 AGTGAGAGGGGAAGGGAGAT 58.977 55.000 0.00 0.00 0.00 2.75
3231 3349 1.695065 TAGTGAGAGGGGAAGGGAGA 58.305 55.000 0.00 0.00 0.00 3.71
3232 3350 2.502130 GTTTAGTGAGAGGGGAAGGGAG 59.498 54.545 0.00 0.00 0.00 4.30
3233 3351 2.113777 AGTTTAGTGAGAGGGGAAGGGA 59.886 50.000 0.00 0.00 0.00 4.20
3234 3352 2.237392 CAGTTTAGTGAGAGGGGAAGGG 59.763 54.545 0.00 0.00 0.00 3.95
3235 3353 3.055747 GTCAGTTTAGTGAGAGGGGAAGG 60.056 52.174 0.00 0.00 0.00 3.46
3236 3354 3.367498 CGTCAGTTTAGTGAGAGGGGAAG 60.367 52.174 0.00 0.00 0.00 3.46
3237 3355 2.561419 CGTCAGTTTAGTGAGAGGGGAA 59.439 50.000 0.00 0.00 0.00 3.97
3238 3356 2.168496 CGTCAGTTTAGTGAGAGGGGA 58.832 52.381 0.00 0.00 0.00 4.81
3239 3357 1.204941 CCGTCAGTTTAGTGAGAGGGG 59.795 57.143 0.00 0.00 33.59 4.79
3240 3358 1.404315 GCCGTCAGTTTAGTGAGAGGG 60.404 57.143 9.63 0.00 38.65 4.30
3241 3359 1.546476 AGCCGTCAGTTTAGTGAGAGG 59.454 52.381 5.21 5.21 0.00 3.69
3242 3360 3.181495 CCTAGCCGTCAGTTTAGTGAGAG 60.181 52.174 0.00 0.00 0.00 3.20
3243 3361 2.753452 CCTAGCCGTCAGTTTAGTGAGA 59.247 50.000 0.00 0.00 0.00 3.27
3244 3362 2.735762 GCCTAGCCGTCAGTTTAGTGAG 60.736 54.545 0.00 0.00 0.00 3.51
3245 3363 1.203994 GCCTAGCCGTCAGTTTAGTGA 59.796 52.381 0.00 0.00 0.00 3.41
3246 3364 1.641577 GCCTAGCCGTCAGTTTAGTG 58.358 55.000 0.00 0.00 0.00 2.74
3247 3365 0.535797 GGCCTAGCCGTCAGTTTAGT 59.464 55.000 0.00 0.00 39.62 2.24
3248 3366 3.364277 GGCCTAGCCGTCAGTTTAG 57.636 57.895 0.00 0.00 39.62 1.85
3259 3377 0.460459 GGACGAGTTCTTGGCCTAGC 60.460 60.000 9.60 0.00 0.00 3.42
3260 3378 1.135333 GAGGACGAGTTCTTGGCCTAG 59.865 57.143 13.94 8.03 0.00 3.02
3261 3379 1.183549 GAGGACGAGTTCTTGGCCTA 58.816 55.000 13.94 0.00 0.00 3.93
3262 3380 0.543174 AGAGGACGAGTTCTTGGCCT 60.543 55.000 13.86 13.86 0.00 5.19
3263 3381 0.321996 AAGAGGACGAGTTCTTGGCC 59.678 55.000 3.80 3.80 32.65 5.36
3264 3382 1.000955 TGAAGAGGACGAGTTCTTGGC 59.999 52.381 0.00 0.00 33.97 4.52
3265 3383 3.321497 CTTGAAGAGGACGAGTTCTTGG 58.679 50.000 0.00 0.00 33.97 3.61
3266 3384 2.734079 GCTTGAAGAGGACGAGTTCTTG 59.266 50.000 0.00 0.00 33.97 3.02
3267 3385 2.630580 AGCTTGAAGAGGACGAGTTCTT 59.369 45.455 0.00 0.00 36.41 2.52
3268 3386 2.230266 GAGCTTGAAGAGGACGAGTTCT 59.770 50.000 0.00 0.00 0.00 3.01
3269 3387 2.601804 GAGCTTGAAGAGGACGAGTTC 58.398 52.381 0.00 0.00 0.00 3.01
3270 3388 1.273886 GGAGCTTGAAGAGGACGAGTT 59.726 52.381 0.00 0.00 0.00 3.01
3271 3389 0.892063 GGAGCTTGAAGAGGACGAGT 59.108 55.000 0.00 0.00 0.00 4.18
3272 3390 0.891373 TGGAGCTTGAAGAGGACGAG 59.109 55.000 0.00 0.00 0.00 4.18
3273 3391 1.478510 GATGGAGCTTGAAGAGGACGA 59.521 52.381 0.00 0.00 0.00 4.20
3274 3392 1.800655 CGATGGAGCTTGAAGAGGACG 60.801 57.143 0.00 0.00 0.00 4.79
3275 3393 1.205893 ACGATGGAGCTTGAAGAGGAC 59.794 52.381 0.00 0.00 0.00 3.85
3276 3394 1.561643 ACGATGGAGCTTGAAGAGGA 58.438 50.000 0.00 0.00 0.00 3.71
3277 3395 2.005451 CAACGATGGAGCTTGAAGAGG 58.995 52.381 0.00 0.00 0.00 3.69
3278 3396 2.928757 CTCAACGATGGAGCTTGAAGAG 59.071 50.000 0.00 0.00 0.00 2.85
3279 3397 2.964740 CTCAACGATGGAGCTTGAAGA 58.035 47.619 0.00 0.00 0.00 2.87
3287 3405 0.816825 CCATGGGCTCAACGATGGAG 60.817 60.000 2.85 0.00 46.12 3.86
3288 3406 1.224315 CCATGGGCTCAACGATGGA 59.776 57.895 2.85 0.00 46.12 3.41
3289 3407 0.179009 ATCCATGGGCTCAACGATGG 60.179 55.000 13.02 0.00 45.03 3.51
3290 3408 1.335810 CAATCCATGGGCTCAACGATG 59.664 52.381 13.02 0.00 0.00 3.84
3291 3409 1.064463 ACAATCCATGGGCTCAACGAT 60.064 47.619 13.02 0.00 0.00 3.73
3292 3410 0.327924 ACAATCCATGGGCTCAACGA 59.672 50.000 13.02 0.00 0.00 3.85
3293 3411 0.734889 GACAATCCATGGGCTCAACG 59.265 55.000 13.02 0.00 0.00 4.10
3294 3412 2.134789 AGACAATCCATGGGCTCAAC 57.865 50.000 13.02 0.00 0.00 3.18
3295 3413 2.905415 AAGACAATCCATGGGCTCAA 57.095 45.000 13.02 0.00 0.00 3.02
3296 3414 2.621407 GGAAAGACAATCCATGGGCTCA 60.621 50.000 13.02 0.00 36.92 4.26
3297 3415 2.027385 GGAAAGACAATCCATGGGCTC 58.973 52.381 13.02 1.40 36.92 4.70
3298 3416 1.642762 AGGAAAGACAATCCATGGGCT 59.357 47.619 13.02 0.00 39.55 5.19
3299 3417 2.027385 GAGGAAAGACAATCCATGGGC 58.973 52.381 13.02 0.00 39.55 5.36
3300 3418 3.285484 CAGAGGAAAGACAATCCATGGG 58.715 50.000 13.02 0.00 39.55 4.00
3301 3419 2.686915 GCAGAGGAAAGACAATCCATGG 59.313 50.000 4.97 4.97 39.55 3.66
3302 3420 2.686915 GGCAGAGGAAAGACAATCCATG 59.313 50.000 0.00 0.00 39.55 3.66
3303 3421 2.579860 AGGCAGAGGAAAGACAATCCAT 59.420 45.455 0.00 0.00 39.55 3.41
3304 3422 1.988107 AGGCAGAGGAAAGACAATCCA 59.012 47.619 0.00 0.00 39.55 3.41
3305 3423 2.363683 CAGGCAGAGGAAAGACAATCC 58.636 52.381 0.00 0.00 37.22 3.01
3306 3424 1.742268 GCAGGCAGAGGAAAGACAATC 59.258 52.381 0.00 0.00 0.00 2.67
3307 3425 1.615384 GGCAGGCAGAGGAAAGACAAT 60.615 52.381 0.00 0.00 0.00 2.71
3308 3426 0.250901 GGCAGGCAGAGGAAAGACAA 60.251 55.000 0.00 0.00 0.00 3.18
3309 3427 1.376466 GGCAGGCAGAGGAAAGACA 59.624 57.895 0.00 0.00 0.00 3.41
3310 3428 1.743252 CGGCAGGCAGAGGAAAGAC 60.743 63.158 0.00 0.00 0.00 3.01
3311 3429 2.665000 CGGCAGGCAGAGGAAAGA 59.335 61.111 0.00 0.00 0.00 2.52
3312 3430 3.130160 GCGGCAGGCAGAGGAAAG 61.130 66.667 0.00 0.00 42.87 2.62
3334 3452 4.436998 CTCCTCGCCACCGGTCAC 62.437 72.222 2.59 0.00 34.56 3.67
3339 3457 2.356818 GATTCTCCTCCTCGCCACCG 62.357 65.000 0.00 0.00 0.00 4.94
3340 3458 1.443828 GATTCTCCTCCTCGCCACC 59.556 63.158 0.00 0.00 0.00 4.61
3341 3459 1.045911 AGGATTCTCCTCCTCGCCAC 61.046 60.000 0.00 0.00 45.66 5.01
3342 3460 1.045350 CAGGATTCTCCTCCTCGCCA 61.045 60.000 0.00 0.00 45.66 5.69
3343 3461 0.757188 TCAGGATTCTCCTCCTCGCC 60.757 60.000 0.00 0.00 45.66 5.54
3344 3462 0.387565 GTCAGGATTCTCCTCCTCGC 59.612 60.000 0.00 0.00 45.66 5.03
3345 3463 0.665835 CGTCAGGATTCTCCTCCTCG 59.334 60.000 0.00 0.00 45.66 4.63
3346 3464 0.387565 GCGTCAGGATTCTCCTCCTC 59.612 60.000 0.00 0.00 45.66 3.71
3347 3465 1.045911 GGCGTCAGGATTCTCCTCCT 61.046 60.000 0.00 0.00 45.66 3.69
3348 3466 1.045911 AGGCGTCAGGATTCTCCTCC 61.046 60.000 0.00 0.00 45.66 4.30
3349 3467 0.387565 GAGGCGTCAGGATTCTCCTC 59.612 60.000 0.52 0.00 45.66 3.71
3351 3469 1.066587 CGAGGCGTCAGGATTCTCC 59.933 63.158 7.26 0.00 36.58 3.71
3352 3470 0.248702 GTCGAGGCGTCAGGATTCTC 60.249 60.000 7.26 0.00 0.00 2.87
3353 3471 0.681564 AGTCGAGGCGTCAGGATTCT 60.682 55.000 7.26 0.00 0.00 2.40
3354 3472 0.173708 AAGTCGAGGCGTCAGGATTC 59.826 55.000 7.26 0.00 0.00 2.52
3355 3473 0.173708 GAAGTCGAGGCGTCAGGATT 59.826 55.000 7.26 0.00 0.00 3.01
3356 3474 1.810532 GAAGTCGAGGCGTCAGGAT 59.189 57.895 7.26 0.00 0.00 3.24
3357 3475 2.687805 CGAAGTCGAGGCGTCAGGA 61.688 63.158 7.26 0.00 43.02 3.86
3358 3476 2.202492 CGAAGTCGAGGCGTCAGG 60.202 66.667 7.26 0.00 43.02 3.86
3359 3477 2.868196 TCGAAGTCGAGGCGTCAG 59.132 61.111 7.26 0.00 44.22 3.51
3368 3486 5.793026 ACCTAAACTACTAGTCGAAGTCG 57.207 43.478 0.00 0.00 41.45 4.18
3409 3527 4.729918 AAGCCCCGCCTCTGCAAG 62.730 66.667 0.00 0.00 37.32 4.01
3430 3548 2.813474 TTGAAGCGCGACCATCCG 60.813 61.111 12.10 0.00 0.00 4.18
3431 3549 1.369091 ATGTTGAAGCGCGACCATCC 61.369 55.000 12.10 0.00 0.00 3.51
3432 3550 0.026803 GATGTTGAAGCGCGACCATC 59.973 55.000 12.10 7.28 0.00 3.51
3433 3551 1.695893 CGATGTTGAAGCGCGACCAT 61.696 55.000 12.10 0.87 0.00 3.55
3434 3552 2.379634 CGATGTTGAAGCGCGACCA 61.380 57.895 12.10 0.00 0.00 4.02
3435 3553 2.092291 TCGATGTTGAAGCGCGACC 61.092 57.895 12.10 0.00 0.00 4.79
3436 3554 1.057361 GTCGATGTTGAAGCGCGAC 59.943 57.895 12.10 0.04 43.37 5.19
3437 3555 0.666274 AAGTCGATGTTGAAGCGCGA 60.666 50.000 12.10 0.00 0.00 5.87
3438 3556 0.163788 AAAGTCGATGTTGAAGCGCG 59.836 50.000 0.00 0.00 0.00 6.86
3439 3557 2.316119 AAAAGTCGATGTTGAAGCGC 57.684 45.000 0.00 0.00 0.00 5.92
3440 3558 4.133856 AGAAAAAGTCGATGTTGAAGCG 57.866 40.909 0.00 0.00 0.00 4.68
3441 3559 5.985781 TGTAGAAAAAGTCGATGTTGAAGC 58.014 37.500 0.00 0.00 0.00 3.86
3442 3560 7.406553 TGTTGTAGAAAAAGTCGATGTTGAAG 58.593 34.615 0.00 0.00 0.00 3.02
3443 3561 7.310072 TGTTGTAGAAAAAGTCGATGTTGAA 57.690 32.000 0.00 0.00 0.00 2.69
3444 3562 6.912203 TGTTGTAGAAAAAGTCGATGTTGA 57.088 33.333 0.00 0.00 0.00 3.18
3445 3563 6.138546 CGTTGTTGTAGAAAAAGTCGATGTTG 59.861 38.462 0.00 0.00 0.00 3.33
3446 3564 6.183360 ACGTTGTTGTAGAAAAAGTCGATGTT 60.183 34.615 0.00 0.00 0.00 2.71
3447 3565 5.292589 ACGTTGTTGTAGAAAAAGTCGATGT 59.707 36.000 0.00 0.00 0.00 3.06
3448 3566 5.734311 ACGTTGTTGTAGAAAAAGTCGATG 58.266 37.500 0.00 0.00 0.00 3.84
3449 3567 5.751990 AGACGTTGTTGTAGAAAAAGTCGAT 59.248 36.000 0.00 0.00 37.38 3.59
3450 3568 5.104374 AGACGTTGTTGTAGAAAAAGTCGA 58.896 37.500 0.00 0.00 37.38 4.20
3451 3569 5.231568 AGAGACGTTGTTGTAGAAAAAGTCG 59.768 40.000 0.00 0.00 37.38 4.18
3452 3570 6.585389 AGAGACGTTGTTGTAGAAAAAGTC 57.415 37.500 0.00 0.00 34.01 3.01
3453 3571 6.197842 CGTAGAGACGTTGTTGTAGAAAAAGT 59.802 38.462 0.00 0.00 44.31 2.66
3454 3572 6.569821 CGTAGAGACGTTGTTGTAGAAAAAG 58.430 40.000 0.00 0.00 44.31 2.27
3455 3573 6.500775 CGTAGAGACGTTGTTGTAGAAAAA 57.499 37.500 0.00 0.00 44.31 1.94
3470 3588 6.320944 AGGACGTTTATTCTTTCGTAGAGAC 58.679 40.000 0.00 0.00 38.43 3.36
3471 3589 6.149973 TGAGGACGTTTATTCTTTCGTAGAGA 59.850 38.462 0.00 0.00 38.43 3.10
3472 3590 6.250951 GTGAGGACGTTTATTCTTTCGTAGAG 59.749 42.308 0.00 0.00 38.43 2.43
3473 3591 6.088824 GTGAGGACGTTTATTCTTTCGTAGA 58.911 40.000 0.00 0.00 36.67 2.59
3474 3592 5.003214 CGTGAGGACGTTTATTCTTTCGTAG 59.997 44.000 0.00 0.00 40.91 3.51
3475 3593 4.853196 CGTGAGGACGTTTATTCTTTCGTA 59.147 41.667 0.00 0.00 40.91 3.43
3476 3594 3.671928 CGTGAGGACGTTTATTCTTTCGT 59.328 43.478 0.00 0.00 40.91 3.85
3477 3595 4.227177 CGTGAGGACGTTTATTCTTTCG 57.773 45.455 0.00 0.00 40.91 3.46
3498 3616 2.202932 AGGCATGGCGTCGATGAC 60.203 61.111 14.30 6.06 0.00 3.06
3499 3617 2.202919 CAGGCATGGCGTCGATGA 60.203 61.111 14.30 0.00 0.00 2.92
3500 3618 3.274586 CCAGGCATGGCGTCGATG 61.275 66.667 14.30 6.04 40.52 3.84
3509 3627 2.484062 GCCATTCCGTCCAGGCATG 61.484 63.158 0.00 0.00 46.26 4.06
3510 3628 2.124151 GCCATTCCGTCCAGGCAT 60.124 61.111 0.00 0.00 46.26 4.40
3512 3630 4.115199 AGGCCATTCCGTCCAGGC 62.115 66.667 5.01 0.00 46.28 4.85
3513 3631 2.124570 CAGGCCATTCCGTCCAGG 60.125 66.667 5.01 0.00 40.77 4.45
3514 3632 2.124570 CCAGGCCATTCCGTCCAG 60.125 66.667 5.01 0.00 40.77 3.86
3515 3633 2.609299 TCCAGGCCATTCCGTCCA 60.609 61.111 5.01 0.00 40.77 4.02
3516 3634 2.124695 GTCCAGGCCATTCCGTCC 60.125 66.667 5.01 0.00 40.77 4.79
3517 3635 0.608035 TTTGTCCAGGCCATTCCGTC 60.608 55.000 5.01 0.00 40.77 4.79
3518 3636 0.609131 CTTTGTCCAGGCCATTCCGT 60.609 55.000 5.01 0.00 40.77 4.69
3519 3637 0.322456 TCTTTGTCCAGGCCATTCCG 60.322 55.000 5.01 0.00 40.77 4.30
3520 3638 2.149973 ATCTTTGTCCAGGCCATTCC 57.850 50.000 5.01 0.00 0.00 3.01
3521 3639 4.021192 TGAAAATCTTTGTCCAGGCCATTC 60.021 41.667 5.01 0.00 0.00 2.67
3522 3640 3.903090 TGAAAATCTTTGTCCAGGCCATT 59.097 39.130 5.01 0.00 0.00 3.16
3523 3641 3.509442 TGAAAATCTTTGTCCAGGCCAT 58.491 40.909 5.01 0.00 0.00 4.40
3524 3642 2.956132 TGAAAATCTTTGTCCAGGCCA 58.044 42.857 5.01 0.00 0.00 5.36
3525 3643 3.766051 AGATGAAAATCTTTGTCCAGGCC 59.234 43.478 0.00 0.00 0.00 5.19
3526 3644 5.166398 CAAGATGAAAATCTTTGTCCAGGC 58.834 41.667 0.00 0.00 38.73 4.85
3527 3645 5.244626 ACCAAGATGAAAATCTTTGTCCAGG 59.755 40.000 0.00 0.00 38.73 4.45
3528 3646 6.336842 ACCAAGATGAAAATCTTTGTCCAG 57.663 37.500 0.00 0.00 38.73 3.86
3529 3647 6.239289 GGAACCAAGATGAAAATCTTTGTCCA 60.239 38.462 5.86 0.00 38.73 4.02
3530 3648 6.159293 GGAACCAAGATGAAAATCTTTGTCC 58.841 40.000 5.86 6.08 38.73 4.02
3531 3649 5.858581 CGGAACCAAGATGAAAATCTTTGTC 59.141 40.000 5.86 1.81 38.73 3.18
3532 3650 5.278957 CCGGAACCAAGATGAAAATCTTTGT 60.279 40.000 0.00 0.00 38.73 2.83
3533 3651 5.048083 TCCGGAACCAAGATGAAAATCTTTG 60.048 40.000 0.00 0.00 38.73 2.77
3534 3652 5.076873 TCCGGAACCAAGATGAAAATCTTT 58.923 37.500 0.00 0.00 38.73 2.52
3535 3653 4.662278 TCCGGAACCAAGATGAAAATCTT 58.338 39.130 0.00 0.00 41.23 2.40
3536 3654 4.019321 TCTCCGGAACCAAGATGAAAATCT 60.019 41.667 5.23 0.00 0.00 2.40
3537 3655 4.261801 TCTCCGGAACCAAGATGAAAATC 58.738 43.478 5.23 0.00 0.00 2.17
3538 3656 4.301072 TCTCCGGAACCAAGATGAAAAT 57.699 40.909 5.23 0.00 0.00 1.82
3539 3657 3.780804 TCTCCGGAACCAAGATGAAAA 57.219 42.857 5.23 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.