Multiple sequence alignment - TraesCS1D01G420700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G420700 chr1D 100.000 4276 0 0 1 4276 477164699 477168974 0.000000e+00 7897.0
1 TraesCS1D01G420700 chr1D 90.123 1053 100 3 1102 2152 416356355 416355305 0.000000e+00 1365.0
2 TraesCS1D01G420700 chr1D 93.793 290 18 0 1102 1391 416356987 416356698 1.830000e-118 436.0
3 TraesCS1D01G420700 chr1A 95.777 2131 65 16 180 2297 573205317 573207435 0.000000e+00 3413.0
4 TraesCS1D01G420700 chr1A 96.238 1701 51 4 2377 4070 573207432 573209126 0.000000e+00 2774.0
5 TraesCS1D01G420700 chr1A 97.872 94 2 0 2293 2386 8337785 8337692 3.420000e-36 163.0
6 TraesCS1D01G420700 chr1B 97.526 1900 45 2 2377 4276 664762916 664764813 0.000000e+00 3247.0
7 TraesCS1D01G420700 chr1B 95.942 1035 28 2 1263 2297 664761899 664762919 0.000000e+00 1666.0
8 TraesCS1D01G420700 chr1B 93.665 805 34 12 301 1102 664761071 664761861 0.000000e+00 1188.0
9 TraesCS1D01G420700 chr6A 93.459 1223 71 8 3060 4276 9501604 9502823 0.000000e+00 1807.0
10 TraesCS1D01G420700 chr6D 89.031 1094 87 17 3187 4261 34003705 34004784 0.000000e+00 1325.0
11 TraesCS1D01G420700 chr6D 88.594 868 48 15 3387 4232 8407233 8406395 0.000000e+00 1007.0
12 TraesCS1D01G420700 chr6D 88.479 868 50 19 3387 4232 8890652 8891491 0.000000e+00 1003.0
13 TraesCS1D01G420700 chr6D 82.700 1000 162 10 1157 2151 34017623 34018616 0.000000e+00 878.0
14 TraesCS1D01G420700 chr6D 79.455 1212 215 18 1102 2295 8858304 8859499 0.000000e+00 828.0
15 TraesCS1D01G420700 chr6D 78.878 1212 209 28 1102 2295 8480334 8479152 0.000000e+00 776.0
16 TraesCS1D01G420700 chr6D 81.459 836 134 12 1478 2297 34001560 34002390 0.000000e+00 665.0
17 TraesCS1D01G420700 chr6D 88.483 356 28 8 2843 3188 34003306 34003658 6.610000e-113 418.0
18 TraesCS1D01G420700 chr6D 90.210 286 25 3 2 286 33883955 33884238 1.880000e-98 370.0
19 TraesCS1D01G420700 chr6D 80.444 450 63 19 2954 3391 8860227 8860663 1.920000e-83 320.0
20 TraesCS1D01G420700 chr6D 80.045 441 64 15 2954 3391 8478415 8477996 5.370000e-79 305.0
21 TraesCS1D01G420700 chr6D 89.744 234 20 3 2380 2611 8859494 8859725 3.230000e-76 296.0
22 TraesCS1D01G420700 chr6D 89.030 237 22 3 2380 2614 8479157 8478923 1.500000e-74 291.0
23 TraesCS1D01G420700 chr6D 82.184 348 43 10 2848 3187 8571407 8571071 9.050000e-72 281.0
24 TraesCS1D01G420700 chr6D 90.850 153 12 2 2380 2530 8572041 8571889 2.020000e-48 204.0
25 TraesCS1D01G420700 chr6B 88.771 1033 115 1 1105 2137 52683064 52682033 0.000000e+00 1264.0
26 TraesCS1D01G420700 chr6B 89.554 852 55 17 2849 3676 55722471 55721630 0.000000e+00 1050.0
27 TraesCS1D01G420700 chr6B 79.620 1212 215 18 959 2144 16428957 16430162 0.000000e+00 841.0
28 TraesCS1D01G420700 chr6B 78.351 1201 212 34 986 2151 21458691 21459878 0.000000e+00 734.0
29 TraesCS1D01G420700 chr6B 78.422 1052 221 6 1105 2153 53062388 53061340 0.000000e+00 680.0
30 TraesCS1D01G420700 chr6B 77.915 1055 208 23 1105 2152 14622606 14621570 6.030000e-178 634.0
31 TraesCS1D01G420700 chr6B 94.118 204 12 0 2380 2583 55723170 55722967 1.150000e-80 311.0
32 TraesCS1D01G420700 chr6B 78.556 457 71 19 3818 4256 52974950 52974503 4.210000e-70 276.0
33 TraesCS1D01G420700 chr6B 89.855 138 14 0 2678 2815 55722606 55722469 1.220000e-40 178.0
34 TraesCS1D01G420700 chr6B 92.593 108 8 0 2190 2297 55723277 55723170 5.720000e-34 156.0
35 TraesCS1D01G420700 chr2B 79.509 1181 210 18 991 2149 709426178 709425008 0.000000e+00 811.0
36 TraesCS1D01G420700 chr2B 91.855 221 16 2 432 652 89506047 89506265 1.490000e-79 307.0
37 TraesCS1D01G420700 chr2B 94.624 93 5 0 2294 2386 715721735 715721827 1.240000e-30 145.0
38 TraesCS1D01G420700 chr3D 78.898 1180 222 16 993 2151 33330499 33329326 0.000000e+00 774.0
39 TraesCS1D01G420700 chr3D 98.864 88 1 0 2294 2381 185712845 185712758 1.590000e-34 158.0
40 TraesCS1D01G420700 chr3D 79.227 207 38 5 446 649 606368537 606368333 5.770000e-29 139.0
41 TraesCS1D01G420700 chr2D 81.908 304 40 8 3400 3699 588164208 588164500 4.270000e-60 243.0
42 TraesCS1D01G420700 chr2D 80.500 200 37 2 450 649 541079099 541079296 7.410000e-33 152.0
43 TraesCS1D01G420700 chr7A 96.875 96 3 0 2293 2388 86235170 86235265 1.230000e-35 161.0
44 TraesCS1D01G420700 chr7D 100.000 86 0 0 2294 2379 232079800 232079715 4.430000e-35 159.0
45 TraesCS1D01G420700 chr7D 93.069 101 7 0 2281 2381 187655416 187655316 9.580000e-32 148.0
46 TraesCS1D01G420700 chr7B 100.000 85 0 0 2294 2378 164978056 164978140 1.590000e-34 158.0
47 TraesCS1D01G420700 chr7B 88.333 120 10 4 2284 2400 749301685 749301567 1.600000e-29 141.0
48 TraesCS1D01G420700 chr3B 79.909 219 39 5 451 667 7238294 7238509 5.720000e-34 156.0
49 TraesCS1D01G420700 chr3B 79.293 198 36 5 448 643 815388142 815388336 2.680000e-27 134.0
50 TraesCS1D01G420700 chr5B 89.474 114 9 3 2291 2402 613156386 613156498 1.600000e-29 141.0
51 TraesCS1D01G420700 chr4B 79.275 193 30 7 477 667 101712720 101712904 4.490000e-25 126.0
52 TraesCS1D01G420700 chr4D 76.786 224 46 5 446 668 420511899 420511681 2.090000e-23 121.0
53 TraesCS1D01G420700 chrUn 97.917 48 1 0 2380 2427 477782703 477782656 2.740000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G420700 chr1D 477164699 477168974 4275 False 7897.000000 7897 100.000000 1 4276 1 chr1D.!!$F1 4275
1 TraesCS1D01G420700 chr1D 416355305 416356987 1682 True 900.500000 1365 91.958000 1102 2152 2 chr1D.!!$R1 1050
2 TraesCS1D01G420700 chr1A 573205317 573209126 3809 False 3093.500000 3413 96.007500 180 4070 2 chr1A.!!$F1 3890
3 TraesCS1D01G420700 chr1B 664761071 664764813 3742 False 2033.666667 3247 95.711000 301 4276 3 chr1B.!!$F1 3975
4 TraesCS1D01G420700 chr6A 9501604 9502823 1219 False 1807.000000 1807 93.459000 3060 4276 1 chr6A.!!$F1 1216
5 TraesCS1D01G420700 chr6D 8406395 8407233 838 True 1007.000000 1007 88.594000 3387 4232 1 chr6D.!!$R1 845
6 TraesCS1D01G420700 chr6D 8890652 8891491 839 False 1003.000000 1003 88.479000 3387 4232 1 chr6D.!!$F1 845
7 TraesCS1D01G420700 chr6D 34017623 34018616 993 False 878.000000 878 82.700000 1157 2151 1 chr6D.!!$F3 994
8 TraesCS1D01G420700 chr6D 34001560 34004784 3224 False 802.666667 1325 86.324333 1478 4261 3 chr6D.!!$F5 2783
9 TraesCS1D01G420700 chr6D 8858304 8860663 2359 False 481.333333 828 83.214333 1102 3391 3 chr6D.!!$F4 2289
10 TraesCS1D01G420700 chr6D 8477996 8480334 2338 True 457.333333 776 82.651000 1102 3391 3 chr6D.!!$R2 2289
11 TraesCS1D01G420700 chr6D 8571071 8572041 970 True 242.500000 281 86.517000 2380 3187 2 chr6D.!!$R3 807
12 TraesCS1D01G420700 chr6B 52682033 52683064 1031 True 1264.000000 1264 88.771000 1105 2137 1 chr6B.!!$R2 1032
13 TraesCS1D01G420700 chr6B 16428957 16430162 1205 False 841.000000 841 79.620000 959 2144 1 chr6B.!!$F1 1185
14 TraesCS1D01G420700 chr6B 21458691 21459878 1187 False 734.000000 734 78.351000 986 2151 1 chr6B.!!$F2 1165
15 TraesCS1D01G420700 chr6B 53061340 53062388 1048 True 680.000000 680 78.422000 1105 2153 1 chr6B.!!$R4 1048
16 TraesCS1D01G420700 chr6B 14621570 14622606 1036 True 634.000000 634 77.915000 1105 2152 1 chr6B.!!$R1 1047
17 TraesCS1D01G420700 chr6B 55721630 55723277 1647 True 423.750000 1050 91.530000 2190 3676 4 chr6B.!!$R5 1486
18 TraesCS1D01G420700 chr2B 709425008 709426178 1170 True 811.000000 811 79.509000 991 2149 1 chr2B.!!$R1 1158
19 TraesCS1D01G420700 chr3D 33329326 33330499 1173 True 774.000000 774 78.898000 993 2151 1 chr3D.!!$R1 1158

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.102120 TTGCGCAAAAGTTGGGAGTG 59.898 50.000 22.78 0.00 45.47 3.51 F
94 95 0.247145 CGACGCGCTCCACATTTAAC 60.247 55.000 5.73 0.00 0.00 2.01 F
97 98 0.519519 CGCGCTCCACATTTAACCAA 59.480 50.000 5.56 0.00 0.00 3.67 F
421 429 0.877649 ATAGTTGCATGAGCGGCTCG 60.878 55.000 23.72 12.41 46.23 5.03 F
1935 1999 1.229082 TTACAGCCTGGAGGGTCGT 60.229 57.895 0.00 0.50 45.47 4.34 F
2305 2380 0.035152 TCGTTGCTACTCCCTCCGTA 60.035 55.000 0.00 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1935 1999 0.469331 CATAGTACCGGGGCCTGAGA 60.469 60.000 15.75 0.0 0.00 3.27 R
2112 2176 3.089284 TCTGAATCTAGTCGGCACTTCA 58.911 45.455 0.00 0.0 33.62 3.02 R
2137 2201 9.357652 CAAACTTTACATATTCTTGGTTCATGG 57.642 33.333 0.00 0.0 0.00 3.66 R
2178 2247 1.977129 CCCAAGCAAAATCTTTGGGGA 59.023 47.619 12.61 0.0 33.40 4.81 R
3015 3591 1.002069 ACAATGAATGGGGGCAGAGA 58.998 50.000 0.00 0.0 0.00 3.10 R
3308 3960 1.067635 ACAAAAAGATGATGGGCGTGC 60.068 47.619 0.00 0.0 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.997315 TAGTGCTCTGTGGCGCCT 60.997 61.111 29.70 6.08 42.92 5.52
18 19 2.583441 TAGTGCTCTGTGGCGCCTT 61.583 57.895 29.70 4.27 42.92 4.35
32 33 1.955663 GCCTTGCGCAAAAGTTGGG 60.956 57.895 25.01 20.52 45.41 4.12
33 34 1.739049 CCTTGCGCAAAAGTTGGGA 59.261 52.632 25.01 0.00 45.47 4.37
34 35 0.318955 CCTTGCGCAAAAGTTGGGAG 60.319 55.000 25.01 8.67 45.47 4.30
35 36 0.385390 CTTGCGCAAAAGTTGGGAGT 59.615 50.000 25.01 0.00 45.47 3.85
36 37 0.102120 TTGCGCAAAAGTTGGGAGTG 59.898 50.000 22.78 0.00 45.47 3.51
38 39 0.948678 GCGCAAAAGTTGGGAGTGTA 59.051 50.000 0.30 0.00 45.47 2.90
39 40 1.069227 GCGCAAAAGTTGGGAGTGTAG 60.069 52.381 0.30 0.00 45.47 2.74
40 41 2.218603 CGCAAAAGTTGGGAGTGTAGT 58.781 47.619 0.00 0.00 45.47 2.73
41 42 3.395639 CGCAAAAGTTGGGAGTGTAGTA 58.604 45.455 0.00 0.00 45.47 1.82
43 44 4.131596 GCAAAAGTTGGGAGTGTAGTACA 58.868 43.478 0.00 0.00 0.00 2.90
45 46 5.935789 GCAAAAGTTGGGAGTGTAGTACATA 59.064 40.000 6.21 0.00 0.00 2.29
46 47 6.598064 GCAAAAGTTGGGAGTGTAGTACATAT 59.402 38.462 6.21 0.00 0.00 1.78
47 48 7.414098 GCAAAAGTTGGGAGTGTAGTACATATG 60.414 40.741 6.21 0.00 0.00 1.78
48 49 5.871396 AGTTGGGAGTGTAGTACATATGG 57.129 43.478 6.21 0.00 0.00 2.74
49 50 5.525484 AGTTGGGAGTGTAGTACATATGGA 58.475 41.667 6.21 0.00 0.00 3.41
50 51 6.143915 AGTTGGGAGTGTAGTACATATGGAT 58.856 40.000 6.21 0.00 0.00 3.41
51 52 6.615726 AGTTGGGAGTGTAGTACATATGGATT 59.384 38.462 6.21 0.00 0.00 3.01
52 53 6.665992 TGGGAGTGTAGTACATATGGATTC 57.334 41.667 6.21 0.00 0.00 2.52
53 54 6.140377 TGGGAGTGTAGTACATATGGATTCA 58.860 40.000 6.21 0.00 0.00 2.57
54 55 6.787458 TGGGAGTGTAGTACATATGGATTCAT 59.213 38.462 6.21 0.00 37.40 2.57
55 56 7.953493 TGGGAGTGTAGTACATATGGATTCATA 59.047 37.037 6.21 0.00 39.85 2.15
56 57 8.982723 GGGAGTGTAGTACATATGGATTCATAT 58.017 37.037 6.21 0.10 44.84 1.78
80 81 4.459606 TGTTGTGAATAAAACATCGACGC 58.540 39.130 0.00 0.00 31.52 5.19
81 82 3.362281 TGTGAATAAAACATCGACGCG 57.638 42.857 3.53 3.53 0.00 6.01
82 83 2.091409 GTGAATAAAACATCGACGCGC 58.909 47.619 5.73 0.00 0.00 6.86
83 84 1.996898 TGAATAAAACATCGACGCGCT 59.003 42.857 5.73 0.00 0.00 5.92
88 89 3.567478 AACATCGACGCGCTCCACA 62.567 57.895 5.73 0.00 0.00 4.17
90 91 2.167219 CATCGACGCGCTCCACATT 61.167 57.895 5.73 0.00 0.00 2.71
91 92 1.447838 ATCGACGCGCTCCACATTT 60.448 52.632 5.73 0.00 0.00 2.32
94 95 0.247145 CGACGCGCTCCACATTTAAC 60.247 55.000 5.73 0.00 0.00 2.01
96 97 0.604243 ACGCGCTCCACATTTAACCA 60.604 50.000 5.73 0.00 0.00 3.67
97 98 0.519519 CGCGCTCCACATTTAACCAA 59.480 50.000 5.56 0.00 0.00 3.67
98 99 1.068885 CGCGCTCCACATTTAACCAAA 60.069 47.619 5.56 0.00 0.00 3.28
99 100 2.595386 GCGCTCCACATTTAACCAAAG 58.405 47.619 0.00 0.00 0.00 2.77
101 102 3.670627 GCGCTCCACATTTAACCAAAGAG 60.671 47.826 0.00 0.00 0.00 2.85
102 103 3.502211 CGCTCCACATTTAACCAAAGAGT 59.498 43.478 0.00 0.00 0.00 3.24
104 105 5.163854 CGCTCCACATTTAACCAAAGAGTAG 60.164 44.000 0.00 0.00 0.00 2.57
105 106 5.938125 GCTCCACATTTAACCAAAGAGTAGA 59.062 40.000 0.00 0.00 0.00 2.59
106 107 6.092807 GCTCCACATTTAACCAAAGAGTAGAG 59.907 42.308 0.00 0.00 31.10 2.43
107 108 7.311092 TCCACATTTAACCAAAGAGTAGAGA 57.689 36.000 0.00 0.00 0.00 3.10
108 109 7.386851 TCCACATTTAACCAAAGAGTAGAGAG 58.613 38.462 0.00 0.00 0.00 3.20
109 110 7.234782 TCCACATTTAACCAAAGAGTAGAGAGA 59.765 37.037 0.00 0.00 0.00 3.10
110 111 7.547370 CCACATTTAACCAAAGAGTAGAGAGAG 59.453 40.741 0.00 0.00 0.00 3.20
112 113 6.919775 TTTAACCAAAGAGTAGAGAGAGCT 57.080 37.500 0.00 0.00 0.00 4.09
113 114 4.799564 AACCAAAGAGTAGAGAGAGCTG 57.200 45.455 0.00 0.00 0.00 4.24
114 115 3.096092 ACCAAAGAGTAGAGAGAGCTGG 58.904 50.000 0.00 0.00 0.00 4.85
115 116 2.159114 CCAAAGAGTAGAGAGAGCTGGC 60.159 54.545 0.00 0.00 0.00 4.85
117 118 3.943671 AAGAGTAGAGAGAGCTGGCTA 57.056 47.619 0.00 0.00 0.00 3.93
118 119 4.453480 AAGAGTAGAGAGAGCTGGCTAT 57.547 45.455 0.00 0.00 0.00 2.97
119 120 5.576563 AAGAGTAGAGAGAGCTGGCTATA 57.423 43.478 0.00 0.00 0.00 1.31
120 121 5.779241 AGAGTAGAGAGAGCTGGCTATAT 57.221 43.478 0.00 0.00 0.00 0.86
121 122 6.884472 AGAGTAGAGAGAGCTGGCTATATA 57.116 41.667 0.00 0.00 0.00 0.86
122 123 7.451731 AGAGTAGAGAGAGCTGGCTATATAT 57.548 40.000 0.00 0.00 0.00 0.86
123 124 7.282585 AGAGTAGAGAGAGCTGGCTATATATG 58.717 42.308 0.00 0.00 0.00 1.78
125 126 8.096621 AGTAGAGAGAGCTGGCTATATATGTA 57.903 38.462 0.00 0.00 0.00 2.29
126 127 8.723365 AGTAGAGAGAGCTGGCTATATATGTAT 58.277 37.037 0.00 0.00 0.00 2.29
127 128 9.349713 GTAGAGAGAGCTGGCTATATATGTATT 57.650 37.037 0.00 0.00 0.00 1.89
129 130 8.694540 AGAGAGAGCTGGCTATATATGTATTTG 58.305 37.037 0.00 0.00 0.00 2.32
131 132 7.401493 AGAGAGCTGGCTATATATGTATTTGGT 59.599 37.037 0.00 0.00 0.00 3.67
132 133 8.609617 AGAGCTGGCTATATATGTATTTGGTA 57.390 34.615 0.00 0.00 0.00 3.25
133 134 8.478877 AGAGCTGGCTATATATGTATTTGGTAC 58.521 37.037 0.00 0.00 0.00 3.34
134 135 8.380742 AGCTGGCTATATATGTATTTGGTACT 57.619 34.615 0.00 0.00 34.27 2.73
135 136 8.826765 AGCTGGCTATATATGTATTTGGTACTT 58.173 33.333 0.00 0.00 34.27 2.24
136 137 8.883731 GCTGGCTATATATGTATTTGGTACTTG 58.116 37.037 0.00 0.00 34.27 3.16
137 138 9.944376 CTGGCTATATATGTATTTGGTACTTGT 57.056 33.333 0.00 0.00 34.27 3.16
147 148 8.821147 TGTATTTGGTACTTGTAGTAGTGTTG 57.179 34.615 0.00 0.00 30.12 3.33
150 151 6.720112 TTGGTACTTGTAGTAGTGTTGAGT 57.280 37.500 0.00 0.00 30.12 3.41
152 153 7.116075 TGGTACTTGTAGTAGTGTTGAGTTT 57.884 36.000 0.00 0.00 30.12 2.66
154 155 7.069085 TGGTACTTGTAGTAGTGTTGAGTTTCT 59.931 37.037 0.00 0.00 30.12 2.52
155 156 7.381678 GGTACTTGTAGTAGTGTTGAGTTTCTG 59.618 40.741 0.00 0.00 30.12 3.02
156 157 7.108841 ACTTGTAGTAGTGTTGAGTTTCTGA 57.891 36.000 0.00 0.00 0.00 3.27
157 158 7.727181 ACTTGTAGTAGTGTTGAGTTTCTGAT 58.273 34.615 0.00 0.00 0.00 2.90
159 160 8.589335 TTGTAGTAGTGTTGAGTTTCTGATTC 57.411 34.615 0.00 0.00 0.00 2.52
160 161 7.722363 TGTAGTAGTGTTGAGTTTCTGATTCA 58.278 34.615 0.00 0.00 0.00 2.57
161 162 8.201464 TGTAGTAGTGTTGAGTTTCTGATTCAA 58.799 33.333 0.00 0.00 0.00 2.69
162 163 7.721286 AGTAGTGTTGAGTTTCTGATTCAAG 57.279 36.000 0.00 0.00 32.00 3.02
163 164 7.500992 AGTAGTGTTGAGTTTCTGATTCAAGA 58.499 34.615 0.00 0.00 32.00 3.02
165 166 5.235186 AGTGTTGAGTTTCTGATTCAAGACG 59.765 40.000 15.16 0.00 44.83 4.18
166 167 5.006746 GTGTTGAGTTTCTGATTCAAGACGT 59.993 40.000 0.00 0.00 36.05 4.34
168 169 6.759356 TGTTGAGTTTCTGATTCAAGACGTTA 59.241 34.615 0.00 0.00 32.00 3.18
169 170 7.441157 TGTTGAGTTTCTGATTCAAGACGTTAT 59.559 33.333 0.00 0.00 32.00 1.89
170 171 7.582435 TGAGTTTCTGATTCAAGACGTTATC 57.418 36.000 0.00 0.00 0.00 1.75
171 172 6.308041 TGAGTTTCTGATTCAAGACGTTATCG 59.692 38.462 0.00 0.00 43.34 2.92
206 207 3.391296 TCAGTCTGTGAAGCCCTTAGTTT 59.609 43.478 0.00 0.00 29.64 2.66
211 212 5.179555 GTCTGTGAAGCCCTTAGTTTGTAAG 59.820 44.000 0.00 0.00 0.00 2.34
243 244 3.822735 AGAGCAAAGCATTTTGTAGCTGA 59.177 39.130 0.00 0.00 44.41 4.26
360 367 2.486663 CCGACGATGATGACGGGGA 61.487 63.158 0.00 0.00 42.21 4.81
396 403 0.987715 CGTGAGCTGACGATGACAAG 59.012 55.000 21.75 0.00 42.10 3.16
411 419 2.308570 TGACAAGGGGACATAGTTGCAT 59.691 45.455 0.00 0.00 0.00 3.96
421 429 0.877649 ATAGTTGCATGAGCGGCTCG 60.878 55.000 23.72 12.41 46.23 5.03
471 480 2.302157 CTCCCTCGGTTTCCTTGTACTT 59.698 50.000 0.00 0.00 0.00 2.24
498 507 8.873830 CACGTATAAGATTTGTCTTGAGTCAAT 58.126 33.333 5.91 0.00 0.00 2.57
934 949 1.700042 GGTCATTCCTCGGCCTCCAT 61.700 60.000 0.00 0.00 0.00 3.41
937 952 2.123589 TCATTCCTCGGCCTCCATTTA 58.876 47.619 0.00 0.00 0.00 1.40
948 963 3.181476 GGCCTCCATTTATTTGTTGCGAT 60.181 43.478 0.00 0.00 0.00 4.58
1935 1999 1.229082 TTACAGCCTGGAGGGTCGT 60.229 57.895 0.00 0.50 45.47 4.34
2137 2201 4.688021 AGTGCCGACTAGATTCAGATTTC 58.312 43.478 0.00 0.00 0.00 2.17
2297 2372 1.798813 CTGGTTTGGTCGTTGCTACTC 59.201 52.381 0.00 0.00 0.00 2.59
2298 2373 1.154197 GGTTTGGTCGTTGCTACTCC 58.846 55.000 0.00 0.08 0.00 3.85
2299 2374 1.154197 GTTTGGTCGTTGCTACTCCC 58.846 55.000 0.00 0.00 0.00 4.30
2300 2375 1.053424 TTTGGTCGTTGCTACTCCCT 58.947 50.000 0.00 0.00 0.00 4.20
2301 2376 0.606604 TTGGTCGTTGCTACTCCCTC 59.393 55.000 0.00 0.00 0.00 4.30
2302 2377 1.255667 TGGTCGTTGCTACTCCCTCC 61.256 60.000 0.00 0.00 0.00 4.30
2303 2378 1.139095 GTCGTTGCTACTCCCTCCG 59.861 63.158 0.00 0.00 0.00 4.63
2304 2379 1.303888 TCGTTGCTACTCCCTCCGT 60.304 57.895 0.00 0.00 0.00 4.69
2305 2380 0.035152 TCGTTGCTACTCCCTCCGTA 60.035 55.000 0.00 0.00 0.00 4.02
2306 2381 0.813184 CGTTGCTACTCCCTCCGTAA 59.187 55.000 0.00 0.00 0.00 3.18
2307 2382 1.203052 CGTTGCTACTCCCTCCGTAAA 59.797 52.381 0.00 0.00 0.00 2.01
2308 2383 2.614779 GTTGCTACTCCCTCCGTAAAC 58.385 52.381 0.00 0.00 0.00 2.01
2309 2384 2.226962 TGCTACTCCCTCCGTAAACT 57.773 50.000 0.00 0.00 0.00 2.66
2310 2385 3.370840 TGCTACTCCCTCCGTAAACTA 57.629 47.619 0.00 0.00 0.00 2.24
2311 2386 3.700538 TGCTACTCCCTCCGTAAACTAA 58.299 45.455 0.00 0.00 0.00 2.24
2312 2387 4.284178 TGCTACTCCCTCCGTAAACTAAT 58.716 43.478 0.00 0.00 0.00 1.73
2313 2388 5.448654 TGCTACTCCCTCCGTAAACTAATA 58.551 41.667 0.00 0.00 0.00 0.98
2314 2389 6.073314 TGCTACTCCCTCCGTAAACTAATAT 58.927 40.000 0.00 0.00 0.00 1.28
2315 2390 7.233632 TGCTACTCCCTCCGTAAACTAATATA 58.766 38.462 0.00 0.00 0.00 0.86
2316 2391 7.725397 TGCTACTCCCTCCGTAAACTAATATAA 59.275 37.037 0.00 0.00 0.00 0.98
2317 2392 8.242739 GCTACTCCCTCCGTAAACTAATATAAG 58.757 40.741 0.00 0.00 0.00 1.73
2318 2393 9.512588 CTACTCCCTCCGTAAACTAATATAAGA 57.487 37.037 0.00 0.00 0.00 2.10
2319 2394 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2320 2395 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2321 2396 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
2322 2397 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
2323 2398 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
2324 2399 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
2372 2447 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
2373 2448 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
2374 2449 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
2375 2450 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
2376 2451 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
2489 2564 4.500375 GCTATTTTGGCCATTCTCATGTCC 60.500 45.833 6.09 0.00 0.00 4.02
2517 2592 7.004555 TGACACACATATTGGAACTAAGAGT 57.995 36.000 0.00 0.00 0.00 3.24
2530 2607 5.184096 GGAACTAAGAGTGTGTGAGATCAGA 59.816 44.000 0.00 0.00 0.00 3.27
2667 3194 7.473735 TGGCATTTTGATATAGTTTGTTGGA 57.526 32.000 0.00 0.00 0.00 3.53
2731 3259 3.374220 TTCTGCAGCATCTTTGTTTGG 57.626 42.857 9.47 0.00 0.00 3.28
2768 3296 9.706691 TTTTGTGAAAGTAATTGTTGGTTTACA 57.293 25.926 0.00 0.00 32.03 2.41
2792 3320 9.927668 ACAAATTCATACCAGTATTTTCCTTTG 57.072 29.630 0.00 0.00 0.00 2.77
2793 3321 8.872845 CAAATTCATACCAGTATTTTCCTTTGC 58.127 33.333 0.00 0.00 0.00 3.68
3015 3591 3.540617 TGCCATTGTACAGATAATGCGT 58.459 40.909 0.00 0.00 33.90 5.24
3308 3960 5.117592 GGATGTCGTTCAATTGCTTTTCAAG 59.882 40.000 0.00 0.00 38.22 3.02
3354 4009 4.412796 TGATGAAGCAGGTTGAGGATAG 57.587 45.455 0.00 0.00 0.00 2.08
3530 4204 2.996621 GAGCTGCATTAGTTTCAGTCGT 59.003 45.455 1.02 0.00 0.00 4.34
3868 4597 5.514914 CACGTTAAAGCAGTCAAAATGTTGT 59.485 36.000 0.00 0.00 36.07 3.32
4221 4951 3.057806 TGCAGTTCATGATGAAACAGCTG 60.058 43.478 13.48 13.48 38.22 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.946201 AAGGCGCCACAGAGCACT 61.946 61.111 31.54 0.00 41.17 4.40
2 3 3.730761 CAAGGCGCCACAGAGCAC 61.731 66.667 31.54 0.00 41.17 4.40
14 15 1.955663 CCCAACTTTTGCGCAAGGC 60.956 57.895 23.68 0.00 43.96 4.35
15 16 0.318955 CTCCCAACTTTTGCGCAAGG 60.319 55.000 23.68 19.53 38.28 3.61
16 17 0.385390 ACTCCCAACTTTTGCGCAAG 59.615 50.000 23.68 15.42 43.44 4.01
17 18 0.102120 CACTCCCAACTTTTGCGCAA 59.898 50.000 21.02 21.02 0.00 4.85
18 19 1.034838 ACACTCCCAACTTTTGCGCA 61.035 50.000 5.66 5.66 0.00 6.09
20 21 2.218603 ACTACACTCCCAACTTTTGCG 58.781 47.619 0.00 0.00 0.00 4.85
21 22 4.131596 TGTACTACACTCCCAACTTTTGC 58.868 43.478 0.00 0.00 0.00 3.68
22 23 7.065803 CCATATGTACTACACTCCCAACTTTTG 59.934 40.741 1.24 0.00 0.00 2.44
24 25 6.442564 TCCATATGTACTACACTCCCAACTTT 59.557 38.462 1.24 0.00 0.00 2.66
25 26 5.962031 TCCATATGTACTACACTCCCAACTT 59.038 40.000 1.24 0.00 0.00 2.66
26 27 5.525484 TCCATATGTACTACACTCCCAACT 58.475 41.667 1.24 0.00 0.00 3.16
27 28 5.864418 TCCATATGTACTACACTCCCAAC 57.136 43.478 1.24 0.00 0.00 3.77
28 29 6.613679 TGAATCCATATGTACTACACTCCCAA 59.386 38.462 1.24 0.00 0.00 4.12
30 31 6.665992 TGAATCCATATGTACTACACTCCC 57.334 41.667 1.24 0.00 0.00 4.30
54 55 8.059502 GCGTCGATGTTTTATTCACAACATATA 58.940 33.333 6.48 0.00 42.46 0.86
55 56 6.905076 GCGTCGATGTTTTATTCACAACATAT 59.095 34.615 6.48 0.00 42.46 1.78
56 57 6.244999 GCGTCGATGTTTTATTCACAACATA 58.755 36.000 6.48 0.00 42.46 2.29
57 58 5.086058 GCGTCGATGTTTTATTCACAACAT 58.914 37.500 6.48 0.00 44.58 2.71
58 59 4.459606 GCGTCGATGTTTTATTCACAACA 58.540 39.130 6.48 0.00 37.31 3.33
59 60 3.532977 CGCGTCGATGTTTTATTCACAAC 59.467 43.478 6.48 0.00 0.00 3.32
60 61 3.727518 CGCGTCGATGTTTTATTCACAA 58.272 40.909 6.48 0.00 0.00 3.33
61 62 2.473212 GCGCGTCGATGTTTTATTCACA 60.473 45.455 8.43 0.00 0.00 3.58
62 63 2.091409 GCGCGTCGATGTTTTATTCAC 58.909 47.619 8.43 0.00 0.00 3.18
63 64 1.996898 AGCGCGTCGATGTTTTATTCA 59.003 42.857 8.43 0.00 0.00 2.57
64 65 2.596807 GGAGCGCGTCGATGTTTTATTC 60.597 50.000 8.43 0.00 0.00 1.75
66 67 0.928229 GGAGCGCGTCGATGTTTTAT 59.072 50.000 8.43 0.00 0.00 1.40
67 68 0.388778 TGGAGCGCGTCGATGTTTTA 60.389 50.000 8.43 0.00 0.00 1.52
68 69 1.666553 TGGAGCGCGTCGATGTTTT 60.667 52.632 8.43 0.00 0.00 2.43
69 70 2.048597 TGGAGCGCGTCGATGTTT 60.049 55.556 8.43 0.00 0.00 2.83
70 71 2.809601 GTGGAGCGCGTCGATGTT 60.810 61.111 8.43 0.00 0.00 2.71
71 72 2.835701 AATGTGGAGCGCGTCGATGT 62.836 55.000 8.43 0.00 0.00 3.06
73 74 0.179121 TAAATGTGGAGCGCGTCGAT 60.179 50.000 8.43 0.00 0.00 3.59
74 75 0.388778 TTAAATGTGGAGCGCGTCGA 60.389 50.000 8.43 0.00 0.00 4.20
76 77 0.096454 GGTTAAATGTGGAGCGCGTC 59.904 55.000 8.43 3.87 0.00 5.19
78 79 0.519519 TTGGTTAAATGTGGAGCGCG 59.480 50.000 0.00 0.00 0.00 6.86
79 80 2.227865 TCTTTGGTTAAATGTGGAGCGC 59.772 45.455 0.00 0.00 0.00 5.92
80 81 3.502211 ACTCTTTGGTTAAATGTGGAGCG 59.498 43.478 0.00 0.00 0.00 5.03
81 82 5.938125 TCTACTCTTTGGTTAAATGTGGAGC 59.062 40.000 0.00 0.00 0.00 4.70
82 83 7.386851 TCTCTACTCTTTGGTTAAATGTGGAG 58.613 38.462 0.00 0.00 38.09 3.86
83 84 7.234782 TCTCTCTACTCTTTGGTTAAATGTGGA 59.765 37.037 0.00 0.00 0.00 4.02
88 89 7.327214 CAGCTCTCTCTACTCTTTGGTTAAAT 58.673 38.462 0.00 0.00 0.00 1.40
90 91 5.186021 CCAGCTCTCTCTACTCTTTGGTTAA 59.814 44.000 0.00 0.00 0.00 2.01
91 92 4.707448 CCAGCTCTCTCTACTCTTTGGTTA 59.293 45.833 0.00 0.00 0.00 2.85
94 95 2.159114 GCCAGCTCTCTCTACTCTTTGG 60.159 54.545 0.00 0.00 0.00 3.28
96 97 3.100207 AGCCAGCTCTCTCTACTCTTT 57.900 47.619 0.00 0.00 0.00 2.52
97 98 2.826674 AGCCAGCTCTCTCTACTCTT 57.173 50.000 0.00 0.00 0.00 2.85
98 99 5.779241 ATATAGCCAGCTCTCTCTACTCT 57.221 43.478 0.00 0.00 0.00 3.24
99 100 7.054124 ACATATATAGCCAGCTCTCTCTACTC 58.946 42.308 0.00 0.00 0.00 2.59
101 102 8.918202 ATACATATATAGCCAGCTCTCTCTAC 57.082 38.462 0.00 0.00 0.00 2.59
102 103 9.928618 AAATACATATATAGCCAGCTCTCTCTA 57.071 33.333 0.00 0.00 0.00 2.43
104 105 7.925483 CCAAATACATATATAGCCAGCTCTCTC 59.075 40.741 0.00 0.00 0.00 3.20
105 106 7.401493 ACCAAATACATATATAGCCAGCTCTCT 59.599 37.037 0.00 0.00 0.00 3.10
106 107 7.560368 ACCAAATACATATATAGCCAGCTCTC 58.440 38.462 0.00 0.00 0.00 3.20
107 108 7.502060 ACCAAATACATATATAGCCAGCTCT 57.498 36.000 0.00 0.00 0.00 4.09
108 109 8.478877 AGTACCAAATACATATATAGCCAGCTC 58.521 37.037 0.00 0.00 36.09 4.09
109 110 8.380742 AGTACCAAATACATATATAGCCAGCT 57.619 34.615 0.00 0.00 36.09 4.24
110 111 8.883731 CAAGTACCAAATACATATATAGCCAGC 58.116 37.037 0.00 0.00 36.09 4.85
121 122 9.431887 CAACACTACTACAAGTACCAAATACAT 57.568 33.333 0.00 0.00 36.09 2.29
122 123 8.640651 TCAACACTACTACAAGTACCAAATACA 58.359 33.333 0.00 0.00 36.09 2.29
123 124 9.136952 CTCAACACTACTACAAGTACCAAATAC 57.863 37.037 0.00 0.00 0.00 1.89
125 126 7.732996 ACTCAACACTACTACAAGTACCAAAT 58.267 34.615 0.00 0.00 0.00 2.32
126 127 7.116075 ACTCAACACTACTACAAGTACCAAA 57.884 36.000 0.00 0.00 0.00 3.28
127 128 6.720112 ACTCAACACTACTACAAGTACCAA 57.280 37.500 0.00 0.00 0.00 3.67
129 130 7.381678 CAGAAACTCAACACTACTACAAGTACC 59.618 40.741 0.00 0.00 0.00 3.34
131 132 8.229253 TCAGAAACTCAACACTACTACAAGTA 57.771 34.615 0.00 0.00 0.00 2.24
132 133 7.108841 TCAGAAACTCAACACTACTACAAGT 57.891 36.000 0.00 0.00 0.00 3.16
133 134 8.594881 AATCAGAAACTCAACACTACTACAAG 57.405 34.615 0.00 0.00 0.00 3.16
134 135 8.201464 TGAATCAGAAACTCAACACTACTACAA 58.799 33.333 0.00 0.00 0.00 2.41
135 136 7.722363 TGAATCAGAAACTCAACACTACTACA 58.278 34.615 0.00 0.00 0.00 2.74
136 137 8.589335 TTGAATCAGAAACTCAACACTACTAC 57.411 34.615 0.00 0.00 0.00 2.73
137 138 8.638873 TCTTGAATCAGAAACTCAACACTACTA 58.361 33.333 0.00 0.00 0.00 1.82
138 139 7.439655 GTCTTGAATCAGAAACTCAACACTACT 59.560 37.037 0.00 0.00 0.00 2.57
140 141 6.420903 CGTCTTGAATCAGAAACTCAACACTA 59.579 38.462 0.00 0.00 0.00 2.74
141 142 5.235186 CGTCTTGAATCAGAAACTCAACACT 59.765 40.000 0.00 0.00 0.00 3.55
142 143 5.006746 ACGTCTTGAATCAGAAACTCAACAC 59.993 40.000 0.00 0.00 0.00 3.32
144 145 5.659048 ACGTCTTGAATCAGAAACTCAAC 57.341 39.130 0.00 0.00 0.00 3.18
146 147 6.308041 CGATAACGTCTTGAATCAGAAACTCA 59.692 38.462 0.00 0.00 34.56 3.41
147 148 6.687655 CGATAACGTCTTGAATCAGAAACTC 58.312 40.000 0.00 0.00 34.56 3.01
165 166 2.182014 GAATTTTGGGCGCACGATAAC 58.818 47.619 10.83 0.00 0.00 1.89
166 167 1.813178 TGAATTTTGGGCGCACGATAA 59.187 42.857 10.83 0.72 0.00 1.75
168 169 0.171007 CTGAATTTTGGGCGCACGAT 59.829 50.000 10.83 0.00 0.00 3.73
169 170 1.169661 ACTGAATTTTGGGCGCACGA 61.170 50.000 10.83 0.63 0.00 4.35
170 171 0.729140 GACTGAATTTTGGGCGCACG 60.729 55.000 10.83 0.00 0.00 5.34
171 172 0.598065 AGACTGAATTTTGGGCGCAC 59.402 50.000 10.83 6.04 0.00 5.34
172 173 0.597568 CAGACTGAATTTTGGGCGCA 59.402 50.000 10.83 0.00 0.00 6.09
173 174 0.598065 ACAGACTGAATTTTGGGCGC 59.402 50.000 10.08 0.00 0.00 6.53
174 175 1.879380 TCACAGACTGAATTTTGGGCG 59.121 47.619 10.08 0.00 0.00 6.13
176 177 3.305608 GGCTTCACAGACTGAATTTTGGG 60.306 47.826 10.08 0.00 38.26 4.12
177 178 3.305608 GGGCTTCACAGACTGAATTTTGG 60.306 47.826 10.08 0.00 38.26 3.28
178 179 3.571401 AGGGCTTCACAGACTGAATTTTG 59.429 43.478 10.08 0.00 38.26 2.44
206 207 2.460669 TGCTCTGCCATCTCTCTTACA 58.539 47.619 0.00 0.00 0.00 2.41
211 212 1.015868 GCTTTGCTCTGCCATCTCTC 58.984 55.000 0.00 0.00 0.00 3.20
360 367 0.328258 ACGCCACCTAGAAAAGCCAT 59.672 50.000 0.00 0.00 0.00 4.40
396 403 1.312815 GCTCATGCAACTATGTCCCC 58.687 55.000 0.00 0.00 39.41 4.81
471 480 7.599171 TGACTCAAGACAAATCTTATACGTGA 58.401 34.615 0.00 0.00 43.69 4.35
916 931 0.181350 AATGGAGGCCGAGGAATGAC 59.819 55.000 0.00 0.00 0.00 3.06
1935 1999 0.469331 CATAGTACCGGGGCCTGAGA 60.469 60.000 15.75 0.00 0.00 3.27
2112 2176 3.089284 TCTGAATCTAGTCGGCACTTCA 58.911 45.455 0.00 0.00 33.62 3.02
2137 2201 9.357652 CAAACTTTACATATTCTTGGTTCATGG 57.642 33.333 0.00 0.00 0.00 3.66
2178 2247 1.977129 CCCAAGCAAAATCTTTGGGGA 59.023 47.619 12.61 0.00 33.40 4.81
2297 2372 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
2298 2373 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
2346 2421 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
2347 2422 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
2348 2423 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
2349 2424 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
2350 2425 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2356 2431 9.780186 GCAAATACTCCCTCTGTAAACTAATAT 57.220 33.333 0.00 0.00 0.00 1.28
2357 2432 8.989131 AGCAAATACTCCCTCTGTAAACTAATA 58.011 33.333 0.00 0.00 0.00 0.98
2358 2433 7.862675 AGCAAATACTCCCTCTGTAAACTAAT 58.137 34.615 0.00 0.00 0.00 1.73
2359 2434 7.253905 AGCAAATACTCCCTCTGTAAACTAA 57.746 36.000 0.00 0.00 0.00 2.24
2360 2435 6.869206 AGCAAATACTCCCTCTGTAAACTA 57.131 37.500 0.00 0.00 0.00 2.24
2361 2436 5.763876 AGCAAATACTCCCTCTGTAAACT 57.236 39.130 0.00 0.00 0.00 2.66
2362 2437 6.877322 TGTTAGCAAATACTCCCTCTGTAAAC 59.123 38.462 0.00 0.00 0.00 2.01
2363 2438 6.877322 GTGTTAGCAAATACTCCCTCTGTAAA 59.123 38.462 0.00 0.00 0.00 2.01
2364 2439 6.212791 AGTGTTAGCAAATACTCCCTCTGTAA 59.787 38.462 0.00 0.00 32.08 2.41
2365 2440 5.720041 AGTGTTAGCAAATACTCCCTCTGTA 59.280 40.000 0.00 0.00 32.08 2.74
2366 2441 4.532521 AGTGTTAGCAAATACTCCCTCTGT 59.467 41.667 0.00 0.00 32.08 3.41
2367 2442 5.091261 AGTGTTAGCAAATACTCCCTCTG 57.909 43.478 0.00 0.00 32.08 3.35
2368 2443 5.248477 TCAAGTGTTAGCAAATACTCCCTCT 59.752 40.000 0.00 0.00 36.17 3.69
2369 2444 5.488341 TCAAGTGTTAGCAAATACTCCCTC 58.512 41.667 0.00 0.00 36.17 4.30
2370 2445 5.499004 TCAAGTGTTAGCAAATACTCCCT 57.501 39.130 0.00 0.00 36.17 4.20
2371 2446 5.880332 TCATCAAGTGTTAGCAAATACTCCC 59.120 40.000 0.00 0.00 36.17 4.30
2372 2447 6.985188 TCATCAAGTGTTAGCAAATACTCC 57.015 37.500 0.00 0.00 36.17 3.85
2373 2448 6.963805 GCTTCATCAAGTGTTAGCAAATACTC 59.036 38.462 0.00 0.00 36.17 2.59
2374 2449 6.656693 AGCTTCATCAAGTGTTAGCAAATACT 59.343 34.615 0.00 0.00 38.56 2.12
2375 2450 6.846350 AGCTTCATCAAGTGTTAGCAAATAC 58.154 36.000 0.00 0.00 38.30 1.89
2376 2451 7.824289 ACTAGCTTCATCAAGTGTTAGCAAATA 59.176 33.333 0.00 0.00 38.30 1.40
2377 2452 5.972107 AGCTTCATCAAGTGTTAGCAAAT 57.028 34.783 0.00 0.00 38.30 2.32
2378 2453 5.997746 ACTAGCTTCATCAAGTGTTAGCAAA 59.002 36.000 0.00 0.00 38.30 3.68
2489 2564 9.599866 TCTTAGTTCCAATATGTGTGTCAATAG 57.400 33.333 0.00 0.00 0.00 1.73
2517 2592 3.937079 GCACAATGATCTGATCTCACACA 59.063 43.478 17.82 0.00 0.00 3.72
2667 3194 4.633565 GCTAACAAGAACTAGAGCAAGCAT 59.366 41.667 0.00 0.00 0.00 3.79
2768 3296 8.815912 AGCAAAGGAAAATACTGGTATGAATTT 58.184 29.630 0.00 0.00 0.00 1.82
2792 3320 6.072783 GCCATTCAGAAATACAGGAGAATAGC 60.073 42.308 0.00 0.00 0.00 2.97
2793 3321 6.146837 CGCCATTCAGAAATACAGGAGAATAG 59.853 42.308 0.00 0.00 0.00 1.73
3015 3591 1.002069 ACAATGAATGGGGGCAGAGA 58.998 50.000 0.00 0.00 0.00 3.10
3073 3649 8.388853 GTCTCCTATTCTTAAAAGCTAAAACCG 58.611 37.037 0.00 0.00 0.00 4.44
3308 3960 1.067635 ACAAAAAGATGATGGGCGTGC 60.068 47.619 0.00 0.00 0.00 5.34
3354 4009 2.480419 GCCTATATCATTGCACGGACAC 59.520 50.000 0.00 0.00 0.00 3.67
3530 4204 3.689347 AGCACCAATGAATTCAGTAGCA 58.311 40.909 21.23 0.00 0.00 3.49
3891 4620 7.039434 TCCAAACACCAATAGAACATAAATGCA 60.039 33.333 0.00 0.00 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.