Multiple sequence alignment - TraesCS1D01G420000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G420000 chr1D 100.000 5865 0 0 1 5865 476711523 476705659 0.000000e+00 10831.0
1 TraesCS1D01G420000 chr1D 91.189 976 72 7 2730 3691 438153062 438152087 0.000000e+00 1314.0
2 TraesCS1D01G420000 chr1D 80.374 321 39 15 5567 5865 32441257 32440939 7.650000e-54 222.0
3 TraesCS1D01G420000 chr1D 87.349 166 21 0 4938 5103 445061771 445061606 2.160000e-44 191.0
4 TraesCS1D01G420000 chr1D 86.585 164 20 1 4938 5099 411162457 411162620 4.670000e-41 180.0
5 TraesCS1D01G420000 chr1D 81.905 210 19 9 2507 2697 251402422 251402631 6.080000e-35 159.0
6 TraesCS1D01G420000 chr1A 83.921 2326 188 88 13 2228 572579607 572577358 0.000000e+00 2052.0
7 TraesCS1D01G420000 chr1A 92.089 1264 60 11 3694 4936 572577105 572575861 0.000000e+00 1744.0
8 TraesCS1D01G420000 chr1A 91.132 733 50 9 5134 5865 572575813 572575095 0.000000e+00 979.0
9 TraesCS1D01G420000 chr1A 86.747 166 22 0 4938 5103 540324067 540323902 1.000000e-42 185.0
10 TraesCS1D01G420000 chr1A 87.097 124 10 4 2337 2459 572577212 572577094 1.030000e-27 135.0
11 TraesCS1D01G420000 chr1A 90.000 50 4 1 2302 2350 572577302 572577253 4.910000e-06 63.9
12 TraesCS1D01G420000 chr1B 93.153 1110 70 3 3894 5000 663080141 663079035 0.000000e+00 1624.0
13 TraesCS1D01G420000 chr1B 89.153 1134 58 24 506 1623 663082648 663081564 0.000000e+00 1352.0
14 TraesCS1D01G420000 chr1B 89.105 771 57 14 5106 5865 663048025 663047271 0.000000e+00 933.0
15 TraesCS1D01G420000 chr1B 89.694 621 40 14 1841 2459 663081105 663080507 0.000000e+00 771.0
16 TraesCS1D01G420000 chr1B 80.124 483 34 31 13 449 663083352 663082886 2.660000e-78 303.0
17 TraesCS1D01G420000 chr2D 89.096 1018 95 8 2688 3691 8430161 8429146 0.000000e+00 1251.0
18 TraesCS1D01G420000 chr2D 87.805 164 17 2 4938 5099 340511635 340511473 7.760000e-44 189.0
19 TraesCS1D01G420000 chr2D 86.667 165 19 3 4937 5099 5881819 5881656 4.670000e-41 180.0
20 TraesCS1D01G420000 chr6B 89.521 1002 84 15 2688 3676 158163839 158164832 0.000000e+00 1249.0
21 TraesCS1D01G420000 chr6B 91.667 252 21 0 4052 4303 644806374 644806625 3.360000e-92 350.0
22 TraesCS1D01G420000 chr3D 91.373 881 59 8 2823 3687 512983734 512982855 0.000000e+00 1190.0
23 TraesCS1D01G420000 chr3D 91.243 845 67 5 2848 3687 1311955 1312797 0.000000e+00 1144.0
24 TraesCS1D01G420000 chr3D 86.905 168 21 1 4937 5104 19010464 19010630 2.790000e-43 187.0
25 TraesCS1D01G420000 chr7B 89.226 956 81 14 2753 3687 697431893 697430939 0.000000e+00 1175.0
26 TraesCS1D01G420000 chr2B 89.237 957 80 10 2753 3687 29220834 29219879 0.000000e+00 1175.0
27 TraesCS1D01G420000 chr2B 91.667 252 21 0 4050 4301 232892218 232892469 3.360000e-92 350.0
28 TraesCS1D01G420000 chr2B 87.075 294 26 7 4518 4805 39408689 39408402 7.330000e-84 322.0
29 TraesCS1D01G420000 chr2B 81.308 321 36 9 5567 5865 133646041 133645723 7.600000e-59 239.0
30 TraesCS1D01G420000 chr2B 80.374 321 39 13 5567 5865 129743897 129743579 7.650000e-54 222.0
31 TraesCS1D01G420000 chr2B 86.471 170 22 1 4931 5099 743358096 743358265 1.000000e-42 185.0
32 TraesCS1D01G420000 chr3B 89.707 923 80 4 2780 3687 99673224 99674146 0.000000e+00 1164.0
33 TraesCS1D01G420000 chr3B 93.307 254 17 0 4050 4303 574013969 574013716 5.550000e-100 375.0
34 TraesCS1D01G420000 chr3B 81.308 321 36 9 5567 5865 739402195 739401877 7.600000e-59 239.0
35 TraesCS1D01G420000 chr3A 91.736 847 56 7 2854 3689 340281579 340280736 0.000000e+00 1164.0
36 TraesCS1D01G420000 chr3A 84.912 623 78 9 4124 4743 54469871 54470480 3.000000e-172 616.0
37 TraesCS1D01G420000 chr3A 100.000 32 0 0 4773 4804 54470489 54470520 6.350000e-05 60.2
38 TraesCS1D01G420000 chr5B 84.438 649 83 10 4124 4769 38781850 38782483 1.790000e-174 623.0
39 TraesCS1D01G420000 chr5B 90.157 254 24 1 4050 4303 441680873 441681125 4.380000e-86 329.0
40 TraesCS1D01G420000 chr2A 93.307 254 16 1 4050 4303 735688492 735688240 2.000000e-99 374.0
41 TraesCS1D01G420000 chr2A 79.439 321 42 15 5567 5865 732554797 732555115 7.700000e-49 206.0
42 TraesCS1D01G420000 chr4A 91.732 254 21 0 4050 4303 602949087 602949340 2.600000e-93 353.0
43 TraesCS1D01G420000 chr7A 90.945 254 23 0 4050 4303 12075144 12074891 5.630000e-90 342.0
44 TraesCS1D01G420000 chr4B 80.685 321 38 9 5567 5865 565627224 565627542 1.640000e-55 228.0
45 TraesCS1D01G420000 chr6A 80.062 321 40 15 5567 5865 428361952 428362270 3.560000e-52 217.0
46 TraesCS1D01G420000 chr7D 88.820 161 18 0 4939 5099 591456735 591456895 1.290000e-46 198.0
47 TraesCS1D01G420000 chr4D 88.272 162 19 0 4938 5099 386984829 386984668 1.670000e-45 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G420000 chr1D 476705659 476711523 5864 True 10831.00 10831 100.0000 1 5865 1 chr1D.!!$R4 5864
1 TraesCS1D01G420000 chr1D 438152087 438153062 975 True 1314.00 1314 91.1890 2730 3691 1 chr1D.!!$R2 961
2 TraesCS1D01G420000 chr1A 572575095 572579607 4512 True 994.78 2052 88.8478 13 5865 5 chr1A.!!$R2 5852
3 TraesCS1D01G420000 chr1B 663079035 663083352 4317 True 1012.50 1624 88.0310 13 5000 4 chr1B.!!$R2 4987
4 TraesCS1D01G420000 chr1B 663047271 663048025 754 True 933.00 933 89.1050 5106 5865 1 chr1B.!!$R1 759
5 TraesCS1D01G420000 chr2D 8429146 8430161 1015 True 1251.00 1251 89.0960 2688 3691 1 chr2D.!!$R2 1003
6 TraesCS1D01G420000 chr6B 158163839 158164832 993 False 1249.00 1249 89.5210 2688 3676 1 chr6B.!!$F1 988
7 TraesCS1D01G420000 chr3D 512982855 512983734 879 True 1190.00 1190 91.3730 2823 3687 1 chr3D.!!$R1 864
8 TraesCS1D01G420000 chr3D 1311955 1312797 842 False 1144.00 1144 91.2430 2848 3687 1 chr3D.!!$F1 839
9 TraesCS1D01G420000 chr7B 697430939 697431893 954 True 1175.00 1175 89.2260 2753 3687 1 chr7B.!!$R1 934
10 TraesCS1D01G420000 chr2B 29219879 29220834 955 True 1175.00 1175 89.2370 2753 3687 1 chr2B.!!$R1 934
11 TraesCS1D01G420000 chr3B 99673224 99674146 922 False 1164.00 1164 89.7070 2780 3687 1 chr3B.!!$F1 907
12 TraesCS1D01G420000 chr3A 340280736 340281579 843 True 1164.00 1164 91.7360 2854 3689 1 chr3A.!!$R1 835
13 TraesCS1D01G420000 chr3A 54469871 54470520 649 False 338.10 616 92.4560 4124 4804 2 chr3A.!!$F1 680
14 TraesCS1D01G420000 chr5B 38781850 38782483 633 False 623.00 623 84.4380 4124 4769 1 chr5B.!!$F1 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 324 0.168348 ACGGACGTCGATGAGAAGTG 59.832 55.0 12.58 0.0 41.55 3.16 F
1770 2125 0.179200 GCGTTGGATTAGTTGCGGTG 60.179 55.0 0.00 0.0 0.00 4.94 F
2468 3089 0.035739 GTCTACGCACCAAAGGGGAA 59.964 55.0 0.00 0.0 41.15 3.97 F
2477 3098 0.251341 CCAAAGGGGAAGGTGACAGG 60.251 60.0 0.00 0.0 40.01 4.00 F
2517 3138 0.381089 ACTTATTCGACCCTCTCGCG 59.619 55.0 0.00 0.0 42.62 5.87 F
2521 3142 0.458025 ATTCGACCCTCTCGCGAAAC 60.458 55.0 11.33 0.0 45.54 2.78 F
3107 3747 0.524862 GGTCAGCTACCGTCTTCGAA 59.475 55.0 0.00 0.0 38.88 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1795 2150 0.329596 AGGGTGCTGACATTTCCTCC 59.670 55.000 0.00 0.0 0.00 4.30 R
3595 4245 0.749649 AGCATTGTCACGCCCAAAAA 59.250 45.000 0.00 0.0 0.00 1.94 R
3690 4340 1.062685 CTGCGTGCGTAGACTCGAT 59.937 57.895 3.68 0.0 0.00 3.59 R
3856 4641 1.135915 AGTTCTACCATCTGCTGAGCG 59.864 52.381 0.00 0.0 0.00 5.03 R
3974 4811 1.220749 GCCGGCCTTCACTATGTGA 59.779 57.895 18.11 0.0 41.09 3.58 R
4188 5025 2.185608 GAGCTTGGCGGAGAGGTC 59.814 66.667 0.00 0.0 33.83 3.85 R
5034 5892 0.032912 TGGACTACATACGGGGCAGA 60.033 55.000 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 65 2.010145 AGCACACTACGCATGGTAAG 57.990 50.000 0.00 0.00 0.00 2.34
158 181 3.771160 CGAGCCGCCCTACCTTGT 61.771 66.667 0.00 0.00 0.00 3.16
161 184 1.972660 GAGCCGCCCTACCTTGTCAT 61.973 60.000 0.00 0.00 0.00 3.06
165 188 1.691976 CCGCCCTACCTTGTCATGATA 59.308 52.381 0.00 0.00 0.00 2.15
166 189 2.303022 CCGCCCTACCTTGTCATGATAT 59.697 50.000 0.00 0.00 0.00 1.63
177 200 5.370679 CTTGTCATGATATGATCACCACCA 58.629 41.667 0.00 0.00 43.01 4.17
181 204 4.586841 TCATGATATGATCACCACCACGTA 59.413 41.667 0.00 0.00 43.01 3.57
183 206 3.069016 TGATATGATCACCACCACGTACC 59.931 47.826 0.00 0.00 33.59 3.34
184 207 1.271856 ATGATCACCACCACGTACCA 58.728 50.000 0.00 0.00 0.00 3.25
186 209 0.892755 GATCACCACCACGTACCAGA 59.107 55.000 0.00 0.00 0.00 3.86
187 210 0.895530 ATCACCACCACGTACCAGAG 59.104 55.000 0.00 0.00 0.00 3.35
188 211 0.468585 TCACCACCACGTACCAGAGT 60.469 55.000 0.00 0.00 0.00 3.24
189 212 0.391597 CACCACCACGTACCAGAGTT 59.608 55.000 0.00 0.00 0.00 3.01
190 213 1.125633 ACCACCACGTACCAGAGTTT 58.874 50.000 0.00 0.00 0.00 2.66
191 214 1.069668 ACCACCACGTACCAGAGTTTC 59.930 52.381 0.00 0.00 0.00 2.78
192 215 1.415374 CACCACGTACCAGAGTTTCG 58.585 55.000 0.00 0.00 0.00 3.46
193 216 1.035139 ACCACGTACCAGAGTTTCGT 58.965 50.000 0.00 0.00 36.35 3.85
194 217 1.269413 ACCACGTACCAGAGTTTCGTG 60.269 52.381 8.66 8.66 44.72 4.35
195 218 1.415374 CACGTACCAGAGTTTCGTGG 58.585 55.000 7.89 0.00 43.14 4.94
196 219 1.001048 CACGTACCAGAGTTTCGTGGA 60.001 52.381 7.89 0.00 43.14 4.02
197 220 1.682854 ACGTACCAGAGTTTCGTGGAA 59.317 47.619 0.00 0.00 37.27 3.53
198 221 2.288030 ACGTACCAGAGTTTCGTGGAAG 60.288 50.000 0.00 0.00 37.27 3.46
199 222 2.067013 GTACCAGAGTTTCGTGGAAGC 58.933 52.381 0.00 0.00 37.27 3.86
200 223 0.468226 ACCAGAGTTTCGTGGAAGCA 59.532 50.000 0.00 0.00 37.27 3.91
201 224 0.868406 CCAGAGTTTCGTGGAAGCAC 59.132 55.000 0.00 0.00 35.67 4.40
202 225 1.541233 CCAGAGTTTCGTGGAAGCACT 60.541 52.381 0.00 0.00 35.67 4.40
203 226 2.213499 CAGAGTTTCGTGGAAGCACTT 58.787 47.619 0.00 0.00 0.00 3.16
228 251 4.447724 CGTTTTCTTTCTCGAATCAGTGGA 59.552 41.667 0.00 0.00 0.00 4.02
231 254 3.914312 TCTTTCTCGAATCAGTGGACAC 58.086 45.455 0.00 0.00 0.00 3.67
232 255 3.320826 TCTTTCTCGAATCAGTGGACACA 59.679 43.478 5.14 0.00 0.00 3.72
233 256 3.961480 TTCTCGAATCAGTGGACACAT 57.039 42.857 5.14 0.00 0.00 3.21
234 257 3.236632 TCTCGAATCAGTGGACACATG 57.763 47.619 5.14 0.00 0.00 3.21
235 258 1.662629 CTCGAATCAGTGGACACATGC 59.337 52.381 5.14 0.00 0.00 4.06
236 259 1.001860 TCGAATCAGTGGACACATGCA 59.998 47.619 5.14 0.00 0.00 3.96
237 260 1.129251 CGAATCAGTGGACACATGCAC 59.871 52.381 5.14 0.00 47.00 4.57
241 264 2.557805 GTGGACACATGCACGCTG 59.442 61.111 0.00 0.00 37.43 5.18
242 265 3.356267 TGGACACATGCACGCTGC 61.356 61.111 0.00 3.44 45.29 5.25
266 289 3.147629 GCATGCATCCTCAAGCTAGATT 58.852 45.455 14.21 0.00 0.00 2.40
267 290 4.321718 GCATGCATCCTCAAGCTAGATTA 58.678 43.478 14.21 0.00 0.00 1.75
268 291 4.153835 GCATGCATCCTCAAGCTAGATTAC 59.846 45.833 14.21 0.00 0.00 1.89
286 324 0.168348 ACGGACGTCGATGAGAAGTG 59.832 55.000 12.58 0.00 41.55 3.16
320 362 3.799366 ACATTGTGTTTCTCCACGTACA 58.201 40.909 0.00 0.00 38.20 2.90
321 363 3.558418 ACATTGTGTTTCTCCACGTACAC 59.442 43.478 9.55 9.55 40.87 2.90
356 418 4.534168 GCCGTCACCTTACTTTCTTTTTC 58.466 43.478 0.00 0.00 0.00 2.29
358 420 5.220989 GCCGTCACCTTACTTTCTTTTTCTT 60.221 40.000 0.00 0.00 0.00 2.52
382 444 6.272318 TCATATATATCATGCGTGCGATGAA 58.728 36.000 0.00 0.00 33.59 2.57
385 447 4.754372 ATATCATGCGTGCGATGAATTT 57.246 36.364 0.00 0.36 33.59 1.82
387 449 3.214697 TCATGCGTGCGATGAATTTTT 57.785 38.095 0.00 0.00 0.00 1.94
460 522 6.126409 TGAATTGAATGATACCTAACCACCC 58.874 40.000 0.00 0.00 0.00 4.61
464 526 4.347000 TGAATGATACCTAACCACCCTAGC 59.653 45.833 0.00 0.00 0.00 3.42
476 538 0.551879 ACCCTAGCGAGGCTCTCTAA 59.448 55.000 14.61 0.68 42.21 2.10
504 751 9.190858 CATCATCAAATTGAGTACTACTCTAGC 57.809 37.037 15.76 0.00 45.27 3.42
505 752 8.526667 TCATCAAATTGAGTACTACTCTAGCT 57.473 34.615 15.76 0.00 45.27 3.32
506 753 9.628500 TCATCAAATTGAGTACTACTCTAGCTA 57.372 33.333 15.76 0.00 45.27 3.32
510 757 9.891828 CAAATTGAGTACTACTCTAGCTAGATG 57.108 37.037 23.48 18.38 45.27 2.90
580 828 0.391263 AAACAGCTGGCCTAGTACGC 60.391 55.000 19.93 0.00 0.00 4.42
582 830 1.227089 CAGCTGGCCTAGTACGCAG 60.227 63.158 5.57 0.00 0.00 5.18
584 832 2.423898 GCTGGCCTAGTACGCAGGA 61.424 63.158 17.85 0.60 34.91 3.86
585 833 1.736586 CTGGCCTAGTACGCAGGAG 59.263 63.158 17.85 5.99 34.91 3.69
656 905 2.154462 CTGGTTGAGCCGAAAACAGAT 58.846 47.619 3.21 0.00 43.67 2.90
670 919 3.692257 AACAGATGAAGCAGTGCTACT 57.308 42.857 20.09 12.52 38.25 2.57
700 962 1.040339 TGGTTGTCCTTGTGGTTGGC 61.040 55.000 0.00 0.00 34.23 4.52
711 973 0.881796 GTGGTTGGCCTAAGTTCAGC 59.118 55.000 3.32 0.00 35.27 4.26
717 979 0.909623 GGCCTAAGTTCAGCCAGGTA 59.090 55.000 10.47 0.00 46.34 3.08
768 1030 1.139058 CCAGCCATGAGTGTACTACCC 59.861 57.143 0.00 0.00 0.00 3.69
770 1032 2.435805 CAGCCATGAGTGTACTACCCAT 59.564 50.000 0.00 0.00 0.00 4.00
811 1077 7.362142 GCATCATAATCTACTACAGTGGATCGA 60.362 40.741 8.47 6.75 43.99 3.59
929 1199 3.117812 CGTGCTACCGTGCATGCA 61.118 61.111 18.46 18.46 45.23 3.96
931 1201 1.063006 GTGCTACCGTGCATGCATG 59.937 57.895 29.36 29.36 45.23 4.06
956 1233 2.122729 CCTCCCTCTCCACCCACA 59.877 66.667 0.00 0.00 0.00 4.17
986 1263 0.953960 TGCTCTGCTCTACACGTCGA 60.954 55.000 0.00 0.00 0.00 4.20
1046 1324 0.319405 AAAACACGTACCCTCCGGAG 59.681 55.000 25.36 25.36 0.00 4.63
1054 1332 2.569218 TACCCTCCGGAGCTCTGGTC 62.569 65.000 35.40 9.46 43.01 4.02
1055 1333 3.522731 CCTCCGGAGCTCTGGTCG 61.523 72.222 35.40 26.98 43.01 4.79
1056 1334 3.522731 CTCCGGAGCTCTGGTCGG 61.523 72.222 35.40 27.30 43.01 4.79
1059 1337 4.135153 CGGAGCTCTGGTCGGGTG 62.135 72.222 15.27 0.00 0.00 4.61
1060 1338 3.775654 GGAGCTCTGGTCGGGTGG 61.776 72.222 14.64 0.00 0.00 4.61
1080 1359 2.348104 CCTCACGTGGACGATGGGA 61.348 63.158 17.00 0.00 43.02 4.37
1090 1369 4.899239 CGATGGGAGAGGTGGCGC 62.899 72.222 0.00 0.00 0.00 6.53
1468 1757 1.415672 GCCCCATGATCTTCCCCGTA 61.416 60.000 0.00 0.00 0.00 4.02
1472 1761 2.561569 CCATGATCTTCCCCGTACAAC 58.438 52.381 0.00 0.00 0.00 3.32
1604 1893 7.286215 TCCTTCTAGTATAATTCCACGGAAG 57.714 40.000 4.58 14.13 37.56 3.46
1631 1928 1.171308 CCCAGCCTTGACAATGACAG 58.829 55.000 0.00 0.00 0.00 3.51
1709 2042 3.189080 CGAGAATTCCTGAACATGCACAA 59.811 43.478 0.65 0.00 0.00 3.33
1746 2101 2.555757 CCTTTGGCTGTTCTTCTTGGAG 59.444 50.000 0.00 0.00 0.00 3.86
1770 2125 0.179200 GCGTTGGATTAGTTGCGGTG 60.179 55.000 0.00 0.00 0.00 4.94
1786 2141 2.478134 GCGGTGTCAGAGAATCATATGC 59.522 50.000 0.00 0.00 37.82 3.14
1795 2150 6.053650 TCAGAGAATCATATGCTGACTTTGG 58.946 40.000 0.00 0.00 36.48 3.28
1867 2404 7.827819 TTTTAGAGTAGTTCGTTGGATGATG 57.172 36.000 0.00 0.00 0.00 3.07
1868 2405 6.769134 TTAGAGTAGTTCGTTGGATGATGA 57.231 37.500 0.00 0.00 0.00 2.92
1869 2406 5.860941 AGAGTAGTTCGTTGGATGATGAT 57.139 39.130 0.00 0.00 0.00 2.45
1901 2438 4.312443 CAGACGTAGGTACAATGTTTGGT 58.688 43.478 0.00 0.00 34.12 3.67
1954 2491 3.439857 ACATACCAAACTGTGCCATCT 57.560 42.857 0.00 0.00 0.00 2.90
1959 2496 7.290061 ACATACCAAACTGTGCCATCTAATAT 58.710 34.615 0.00 0.00 0.00 1.28
1962 2499 7.807977 ACCAAACTGTGCCATCTAATATTAG 57.192 36.000 15.25 15.25 0.00 1.73
1989 2549 8.525290 TCTATTCATTCATTTCCCTTTTCTCC 57.475 34.615 0.00 0.00 0.00 3.71
1990 2550 8.115384 TCTATTCATTCATTTCCCTTTTCTCCA 58.885 33.333 0.00 0.00 0.00 3.86
2007 2568 4.107072 TCTCCACTCTCCTTCAATGGAAT 58.893 43.478 0.00 0.00 38.95 3.01
2010 2571 3.624861 CCACTCTCCTTCAATGGAATTCG 59.375 47.826 0.00 0.00 31.22 3.34
2037 2598 5.989777 CCTAACTATAGTAACCACATGTGCC 59.010 44.000 20.81 7.53 0.00 5.01
2106 2668 3.204306 TGATGATGGAGACCTTCATGC 57.796 47.619 19.03 12.77 44.75 4.06
2131 2693 1.160329 GCACCTACATCATCCACGCC 61.160 60.000 0.00 0.00 0.00 5.68
2219 2785 2.610374 TCGACAAGGGTTTTCACTTTCG 59.390 45.455 0.00 0.00 41.26 3.46
2246 2812 4.701651 AGATGGCGATCAAATTCACTGAAA 59.298 37.500 11.55 0.00 0.00 2.69
2250 2816 5.048154 TGGCGATCAAATTCACTGAAATTCA 60.048 36.000 0.00 0.00 0.00 2.57
2283 2849 5.760253 AGACACCAGCATATTTATCTTTCGG 59.240 40.000 0.00 0.00 0.00 4.30
2370 2991 8.149973 ACAAAGTCGCTGAAACTAAATCTTTA 57.850 30.769 0.00 0.00 0.00 1.85
2403 3024 0.945265 CAAAACCATGGCGCCAAGTG 60.945 55.000 36.33 27.63 0.00 3.16
2404 3025 2.713927 AAAACCATGGCGCCAAGTGC 62.714 55.000 36.33 1.76 38.45 4.40
2439 3060 2.031163 AGCTGTGCACGAAGACCC 59.969 61.111 13.13 0.00 0.00 4.46
2442 3063 1.003355 CTGTGCACGAAGACCCCAT 60.003 57.895 13.13 0.00 0.00 4.00
2443 3064 1.300971 CTGTGCACGAAGACCCCATG 61.301 60.000 13.13 0.00 0.00 3.66
2444 3065 1.003839 GTGCACGAAGACCCCATGA 60.004 57.895 0.00 0.00 0.00 3.07
2445 3066 1.003839 TGCACGAAGACCCCATGAC 60.004 57.895 0.00 0.00 0.00 3.06
2446 3067 1.745489 GCACGAAGACCCCATGACC 60.745 63.158 0.00 0.00 0.00 4.02
2447 3068 1.447838 CACGAAGACCCCATGACCG 60.448 63.158 0.00 0.00 0.00 4.79
2448 3069 1.608336 ACGAAGACCCCATGACCGA 60.608 57.895 0.00 0.00 0.00 4.69
2449 3070 1.141881 CGAAGACCCCATGACCGAG 59.858 63.158 0.00 0.00 0.00 4.63
2450 3071 1.605058 CGAAGACCCCATGACCGAGT 61.605 60.000 0.00 0.00 0.00 4.18
2451 3072 0.175989 GAAGACCCCATGACCGAGTC 59.824 60.000 0.00 0.00 0.00 3.36
2452 3073 0.252284 AAGACCCCATGACCGAGTCT 60.252 55.000 0.00 0.00 39.42 3.24
2453 3074 0.629596 AGACCCCATGACCGAGTCTA 59.370 55.000 0.00 0.00 36.08 2.59
2454 3075 0.745468 GACCCCATGACCGAGTCTAC 59.255 60.000 0.00 0.00 33.15 2.59
2455 3076 1.035932 ACCCCATGACCGAGTCTACG 61.036 60.000 0.00 0.00 33.15 3.51
2456 3077 1.065928 CCCATGACCGAGTCTACGC 59.934 63.158 0.00 0.00 33.15 4.42
2457 3078 1.663379 CCCATGACCGAGTCTACGCA 61.663 60.000 0.00 0.00 33.15 5.24
2458 3079 0.525668 CCATGACCGAGTCTACGCAC 60.526 60.000 0.00 0.00 33.15 5.34
2459 3080 0.525668 CATGACCGAGTCTACGCACC 60.526 60.000 5.77 0.00 33.15 5.01
2460 3081 0.963856 ATGACCGAGTCTACGCACCA 60.964 55.000 5.77 0.00 33.15 4.17
2461 3082 1.174078 TGACCGAGTCTACGCACCAA 61.174 55.000 5.77 0.00 33.15 3.67
2462 3083 0.038892 GACCGAGTCTACGCACCAAA 60.039 55.000 0.00 0.00 0.00 3.28
2463 3084 0.038526 ACCGAGTCTACGCACCAAAG 60.039 55.000 0.00 0.00 0.00 2.77
2464 3085 0.736325 CCGAGTCTACGCACCAAAGG 60.736 60.000 0.00 0.00 0.00 3.11
2465 3086 0.736325 CGAGTCTACGCACCAAAGGG 60.736 60.000 0.00 0.00 41.29 3.95
2466 3087 0.391263 GAGTCTACGCACCAAAGGGG 60.391 60.000 0.00 0.00 44.81 4.79
2467 3088 0.834687 AGTCTACGCACCAAAGGGGA 60.835 55.000 0.00 0.00 41.15 4.81
2468 3089 0.035739 GTCTACGCACCAAAGGGGAA 59.964 55.000 0.00 0.00 41.15 3.97
2469 3090 0.323629 TCTACGCACCAAAGGGGAAG 59.676 55.000 0.00 0.00 41.15 3.46
2470 3091 0.676782 CTACGCACCAAAGGGGAAGG 60.677 60.000 0.00 0.00 41.15 3.46
2471 3092 1.420532 TACGCACCAAAGGGGAAGGT 61.421 55.000 0.00 0.00 41.15 3.50
2475 3096 2.640473 ACCAAAGGGGAAGGTGACA 58.360 52.632 0.00 0.00 41.15 3.58
2476 3097 0.478507 ACCAAAGGGGAAGGTGACAG 59.521 55.000 0.00 0.00 41.15 3.51
2477 3098 0.251341 CCAAAGGGGAAGGTGACAGG 60.251 60.000 0.00 0.00 40.01 4.00
2478 3099 0.251341 CAAAGGGGAAGGTGACAGGG 60.251 60.000 0.00 0.00 0.00 4.45
2479 3100 1.435346 AAAGGGGAAGGTGACAGGGG 61.435 60.000 0.00 0.00 0.00 4.79
2480 3101 2.531942 GGGGAAGGTGACAGGGGT 60.532 66.667 0.00 0.00 0.00 4.95
2481 3102 2.603652 GGGGAAGGTGACAGGGGTC 61.604 68.421 0.00 0.00 44.57 4.46
2496 3117 3.080647 GGTCGGCCCATCTAAACAG 57.919 57.895 0.00 0.00 0.00 3.16
2497 3118 1.095807 GGTCGGCCCATCTAAACAGC 61.096 60.000 0.00 0.00 0.00 4.40
2498 3119 0.392461 GTCGGCCCATCTAAACAGCA 60.392 55.000 0.00 0.00 0.00 4.41
2499 3120 0.392461 TCGGCCCATCTAAACAGCAC 60.392 55.000 0.00 0.00 0.00 4.40
2500 3121 0.392998 CGGCCCATCTAAACAGCACT 60.393 55.000 0.00 0.00 0.00 4.40
2501 3122 1.839424 GGCCCATCTAAACAGCACTT 58.161 50.000 0.00 0.00 0.00 3.16
2502 3123 2.679639 CGGCCCATCTAAACAGCACTTA 60.680 50.000 0.00 0.00 0.00 2.24
2503 3124 3.555966 GGCCCATCTAAACAGCACTTAT 58.444 45.455 0.00 0.00 0.00 1.73
2504 3125 3.954258 GGCCCATCTAAACAGCACTTATT 59.046 43.478 0.00 0.00 0.00 1.40
2505 3126 4.036852 GGCCCATCTAAACAGCACTTATTC 59.963 45.833 0.00 0.00 0.00 1.75
2506 3127 4.260784 GCCCATCTAAACAGCACTTATTCG 60.261 45.833 0.00 0.00 0.00 3.34
2507 3128 5.116180 CCCATCTAAACAGCACTTATTCGA 58.884 41.667 0.00 0.00 0.00 3.71
2508 3129 5.006746 CCCATCTAAACAGCACTTATTCGAC 59.993 44.000 0.00 0.00 0.00 4.20
2509 3130 5.006746 CCATCTAAACAGCACTTATTCGACC 59.993 44.000 0.00 0.00 0.00 4.79
2510 3131 4.501071 TCTAAACAGCACTTATTCGACCC 58.499 43.478 0.00 0.00 0.00 4.46
2511 3132 3.418684 AAACAGCACTTATTCGACCCT 57.581 42.857 0.00 0.00 0.00 4.34
2512 3133 2.674796 ACAGCACTTATTCGACCCTC 57.325 50.000 0.00 0.00 0.00 4.30
2513 3134 2.180276 ACAGCACTTATTCGACCCTCT 58.820 47.619 0.00 0.00 0.00 3.69
2514 3135 2.166664 ACAGCACTTATTCGACCCTCTC 59.833 50.000 0.00 0.00 0.00 3.20
2515 3136 1.405821 AGCACTTATTCGACCCTCTCG 59.594 52.381 0.00 0.00 44.44 4.04
2516 3137 1.841450 CACTTATTCGACCCTCTCGC 58.159 55.000 0.00 0.00 42.62 5.03
2517 3138 0.381089 ACTTATTCGACCCTCTCGCG 59.619 55.000 0.00 0.00 42.62 5.87
2518 3139 0.661552 CTTATTCGACCCTCTCGCGA 59.338 55.000 9.26 9.26 42.62 5.87
2519 3140 1.065102 CTTATTCGACCCTCTCGCGAA 59.935 52.381 11.33 0.00 46.31 4.70
2520 3141 1.097232 TATTCGACCCTCTCGCGAAA 58.903 50.000 11.33 0.00 45.54 3.46
2521 3142 0.458025 ATTCGACCCTCTCGCGAAAC 60.458 55.000 11.33 0.00 45.54 2.78
2522 3143 2.482296 TTCGACCCTCTCGCGAAACC 62.482 60.000 11.33 0.00 42.62 3.27
2523 3144 2.125633 GACCCTCTCGCGAAACCC 60.126 66.667 11.33 0.00 0.00 4.11
2524 3145 2.603776 ACCCTCTCGCGAAACCCT 60.604 61.111 11.33 0.00 0.00 4.34
2525 3146 2.168666 GACCCTCTCGCGAAACCCTT 62.169 60.000 11.33 0.00 0.00 3.95
2526 3147 1.448013 CCCTCTCGCGAAACCCTTC 60.448 63.158 11.33 0.00 0.00 3.46
2527 3148 1.448013 CCTCTCGCGAAACCCTTCC 60.448 63.158 11.33 0.00 0.00 3.46
2528 3149 1.448013 CTCTCGCGAAACCCTTCCC 60.448 63.158 11.33 0.00 0.00 3.97
2529 3150 1.889530 CTCTCGCGAAACCCTTCCCT 61.890 60.000 11.33 0.00 0.00 4.20
2530 3151 1.448013 CTCGCGAAACCCTTCCCTC 60.448 63.158 11.33 0.00 0.00 4.30
2531 3152 2.436115 CGCGAAACCCTTCCCTCC 60.436 66.667 0.00 0.00 0.00 4.30
2532 3153 2.045242 GCGAAACCCTTCCCTCCC 60.045 66.667 0.00 0.00 0.00 4.30
2533 3154 2.267961 CGAAACCCTTCCCTCCCG 59.732 66.667 0.00 0.00 0.00 5.14
2534 3155 2.045242 GAAACCCTTCCCTCCCGC 60.045 66.667 0.00 0.00 0.00 6.13
2535 3156 2.856988 AAACCCTTCCCTCCCGCA 60.857 61.111 0.00 0.00 0.00 5.69
2536 3157 3.205851 AAACCCTTCCCTCCCGCAC 62.206 63.158 0.00 0.00 0.00 5.34
2537 3158 4.658786 ACCCTTCCCTCCCGCACT 62.659 66.667 0.00 0.00 0.00 4.40
2538 3159 4.101448 CCCTTCCCTCCCGCACTG 62.101 72.222 0.00 0.00 0.00 3.66
2539 3160 4.785453 CCTTCCCTCCCGCACTGC 62.785 72.222 0.00 0.00 0.00 4.40
2540 3161 3.710722 CTTCCCTCCCGCACTGCT 61.711 66.667 0.00 0.00 0.00 4.24
2541 3162 2.284331 TTCCCTCCCGCACTGCTA 60.284 61.111 0.00 0.00 0.00 3.49
2542 3163 2.579684 CTTCCCTCCCGCACTGCTAC 62.580 65.000 0.00 0.00 0.00 3.58
2543 3164 4.162690 CCCTCCCGCACTGCTACC 62.163 72.222 0.00 0.00 0.00 3.18
2544 3165 4.162690 CCTCCCGCACTGCTACCC 62.163 72.222 0.00 0.00 0.00 3.69
2545 3166 4.514577 CTCCCGCACTGCTACCCG 62.515 72.222 0.00 0.00 0.00 5.28
2547 3168 4.514577 CCCGCACTGCTACCCGAG 62.515 72.222 0.00 0.00 0.00 4.63
2548 3169 3.449227 CCGCACTGCTACCCGAGA 61.449 66.667 0.00 0.00 0.00 4.04
2549 3170 2.103143 CGCACTGCTACCCGAGAG 59.897 66.667 0.00 0.00 0.00 3.20
2576 3197 3.934962 GAGGGCGCCCAGATCCTC 61.935 72.222 45.13 29.35 38.95 3.71
2581 3202 3.917760 CGCCCAGATCCTCCCGTC 61.918 72.222 0.00 0.00 0.00 4.79
2582 3203 3.917760 GCCCAGATCCTCCCGTCG 61.918 72.222 0.00 0.00 0.00 5.12
2583 3204 3.917760 CCCAGATCCTCCCGTCGC 61.918 72.222 0.00 0.00 0.00 5.19
2584 3205 3.917760 CCAGATCCTCCCGTCGCC 61.918 72.222 0.00 0.00 0.00 5.54
2585 3206 3.147595 CAGATCCTCCCGTCGCCA 61.148 66.667 0.00 0.00 0.00 5.69
2586 3207 2.835431 AGATCCTCCCGTCGCCAG 60.835 66.667 0.00 0.00 0.00 4.85
2587 3208 4.593864 GATCCTCCCGTCGCCAGC 62.594 72.222 0.00 0.00 0.00 4.85
2600 3221 4.101077 CCAGCCTCCCCTCCTCCT 62.101 72.222 0.00 0.00 0.00 3.69
2601 3222 2.445654 CAGCCTCCCCTCCTCCTC 60.446 72.222 0.00 0.00 0.00 3.71
2602 3223 3.773154 AGCCTCCCCTCCTCCTCC 61.773 72.222 0.00 0.00 0.00 4.30
2603 3224 4.890306 GCCTCCCCTCCTCCTCCC 62.890 77.778 0.00 0.00 0.00 4.30
2604 3225 4.548513 CCTCCCCTCCTCCTCCCG 62.549 77.778 0.00 0.00 0.00 5.14
2610 3231 4.787280 CTCCTCCTCCCGCACCCT 62.787 72.222 0.00 0.00 0.00 4.34
2611 3232 4.779733 TCCTCCTCCCGCACCCTC 62.780 72.222 0.00 0.00 0.00 4.30
2644 3265 4.293648 GCGGCGGGGCTTGTTTTT 62.294 61.111 9.78 0.00 0.00 1.94
2645 3266 2.049526 CGGCGGGGCTTGTTTTTC 60.050 61.111 0.00 0.00 0.00 2.29
2646 3267 2.342279 GGCGGGGCTTGTTTTTCC 59.658 61.111 0.00 0.00 0.00 3.13
2647 3268 2.207229 GGCGGGGCTTGTTTTTCCT 61.207 57.895 0.00 0.00 0.00 3.36
2648 3269 1.289066 GCGGGGCTTGTTTTTCCTC 59.711 57.895 0.00 0.00 0.00 3.71
2649 3270 1.964448 CGGGGCTTGTTTTTCCTCC 59.036 57.895 0.00 0.00 0.00 4.30
2650 3271 1.862602 CGGGGCTTGTTTTTCCTCCG 61.863 60.000 0.00 0.00 0.00 4.63
2651 3272 1.289066 GGGCTTGTTTTTCCTCCGC 59.711 57.895 0.00 0.00 0.00 5.54
2652 3273 1.081442 GGCTTGTTTTTCCTCCGCG 60.081 57.895 0.00 0.00 0.00 6.46
2653 3274 1.729484 GCTTGTTTTTCCTCCGCGC 60.729 57.895 0.00 0.00 0.00 6.86
2654 3275 1.440353 CTTGTTTTTCCTCCGCGCG 60.440 57.895 25.67 25.67 0.00 6.86
2655 3276 1.837538 CTTGTTTTTCCTCCGCGCGA 61.838 55.000 34.63 16.66 0.00 5.87
2656 3277 1.231958 TTGTTTTTCCTCCGCGCGAT 61.232 50.000 34.63 0.00 0.00 4.58
2657 3278 1.226018 GTTTTTCCTCCGCGCGATG 60.226 57.895 34.63 22.42 0.00 3.84
2658 3279 2.395360 TTTTTCCTCCGCGCGATGG 61.395 57.895 34.63 30.01 0.00 3.51
2659 3280 4.830765 TTTCCTCCGCGCGATGGG 62.831 66.667 34.63 27.32 0.00 4.00
2679 3300 3.654020 GGCGCGGGCATCTTCATC 61.654 66.667 26.61 1.82 42.47 2.92
2680 3301 4.005472 GCGCGGGCATCTTCATCG 62.005 66.667 20.76 0.00 39.62 3.84
2681 3302 2.279451 CGCGGGCATCTTCATCGA 60.279 61.111 0.00 0.00 0.00 3.59
2682 3303 2.305853 CGCGGGCATCTTCATCGAG 61.306 63.158 0.00 0.00 0.00 4.04
2683 3304 1.227380 GCGGGCATCTTCATCGAGT 60.227 57.895 0.00 0.00 0.00 4.18
2684 3305 1.493950 GCGGGCATCTTCATCGAGTG 61.494 60.000 0.00 0.00 0.00 3.51
2685 3306 1.493950 CGGGCATCTTCATCGAGTGC 61.494 60.000 0.00 0.00 35.17 4.40
2686 3307 1.493950 GGGCATCTTCATCGAGTGCG 61.494 60.000 0.00 0.00 36.70 5.34
2951 3590 2.363018 CTCTCTGTGCGGGGAGGA 60.363 66.667 0.00 0.00 0.00 3.71
3107 3747 0.524862 GGTCAGCTACCGTCTTCGAA 59.475 55.000 0.00 0.00 38.88 3.71
3211 3857 2.421739 GTGCCGTGGTGAGACAGT 59.578 61.111 0.00 0.00 0.00 3.55
3232 3878 2.654877 GGAAGCTTCGTGACCGGA 59.345 61.111 19.91 0.00 33.95 5.14
3258 3905 2.600470 GGTGGGGGTCTGTTTGGC 60.600 66.667 0.00 0.00 0.00 4.52
3305 3952 3.391626 GGAGGTTAGGATCGGGAGAAATT 59.608 47.826 0.00 0.00 45.37 1.82
3387 4034 3.015312 GCGTCGGGGCTACCTTTCT 62.015 63.158 0.00 0.00 36.97 2.52
3391 4038 2.105766 GTCGGGGCTACCTTTCTTCTA 58.894 52.381 0.00 0.00 36.97 2.10
3466 4115 3.498481 CCCTTCTTGGAGGTGTTGATTGA 60.498 47.826 0.00 0.00 38.35 2.57
3508 4157 2.989639 CTTGGTGGGCGATCTCCA 59.010 61.111 3.71 2.27 0.00 3.86
3615 4265 1.610363 TTTTGGGCGTGACAATGCTA 58.390 45.000 1.44 0.00 38.46 3.49
3649 4299 3.678806 GCACCTATCGTTGGATGTCTTGA 60.679 47.826 0.00 0.00 34.00 3.02
3719 4369 1.148157 CGCACGCAGAACCCATCTAG 61.148 60.000 0.00 0.00 36.32 2.43
3720 4370 1.432270 GCACGCAGAACCCATCTAGC 61.432 60.000 0.00 0.00 36.32 3.42
3753 4528 4.385825 CTTGCTCCAACTAGTGTTTGGTA 58.614 43.478 11.09 0.00 33.52 3.25
3779 4554 2.418368 TCCCATTCCCACATTTCTCG 57.582 50.000 0.00 0.00 0.00 4.04
3856 4641 1.869767 CCACGCCATAAGAGATCTTGC 59.130 52.381 5.34 0.00 37.40 4.01
3912 4748 6.751514 TTCAGTACTTGTGTTGTGTGATTT 57.248 33.333 0.00 0.00 0.00 2.17
3927 4763 3.833650 TGTGATTTTGGCATGGTTGATCT 59.166 39.130 0.00 0.00 0.00 2.75
3974 4811 6.353404 TCTTTTGGTTTCAGAAACAAGGTT 57.647 33.333 24.37 0.00 42.95 3.50
4094 4931 2.030562 AACACCGACTTCCCGCTG 59.969 61.111 0.00 0.00 0.00 5.18
4133 4970 4.717629 TTCCTCGTCGCCACGCTG 62.718 66.667 0.00 0.00 46.28 5.18
4283 5120 3.827898 CTGGAGCGGACCGAGACC 61.828 72.222 20.50 16.77 0.00 3.85
4285 5122 4.131088 GGAGCGGACCGAGACCAC 62.131 72.222 20.50 0.00 0.00 4.16
4286 5123 3.063084 GAGCGGACCGAGACCACT 61.063 66.667 20.50 3.16 0.00 4.00
4287 5124 3.343788 GAGCGGACCGAGACCACTG 62.344 68.421 20.50 0.00 0.00 3.66
4751 5609 1.911357 AGCCTGGACATGAACATGAGA 59.089 47.619 19.56 4.09 41.20 3.27
4882 5740 7.540055 GCTCAATTCTCCTTGTATGTTTCTTTG 59.460 37.037 0.00 0.00 0.00 2.77
4904 5762 5.112686 TGTAGTTTGTCAAAATTTGCCACC 58.887 37.500 3.26 0.00 0.00 4.61
4920 5778 2.682856 GCCACCGATTTTCATCTTAGCA 59.317 45.455 0.00 0.00 0.00 3.49
4927 5785 7.967854 CACCGATTTTCATCTTAGCATGTAAAA 59.032 33.333 0.00 0.00 29.91 1.52
4946 5804 9.836179 ATGTAAAATCAGATAGATACTCCCTCT 57.164 33.333 0.00 0.00 35.39 3.69
4954 5812 7.073853 TCAGATAGATACTCCCTCTGTTCCTAA 59.926 40.741 0.00 0.00 35.83 2.69
5008 5866 9.620660 TGCACTACATACAAATGTATATAGACG 57.379 33.333 20.22 13.47 45.33 4.18
5009 5867 9.622004 GCACTACATACAAATGTATATAGACGT 57.378 33.333 20.22 10.11 45.33 4.34
5028 5886 7.024340 AGACGTATTTTAGAGCGTAGATTCA 57.976 36.000 0.00 0.00 37.71 2.57
5029 5887 6.911511 AGACGTATTTTAGAGCGTAGATTCAC 59.088 38.462 0.00 0.00 37.71 3.18
5030 5888 6.793349 ACGTATTTTAGAGCGTAGATTCACT 58.207 36.000 0.00 0.00 35.71 3.41
5031 5889 6.911511 ACGTATTTTAGAGCGTAGATTCACTC 59.088 38.462 0.00 0.00 35.71 3.51
5032 5890 6.910972 CGTATTTTAGAGCGTAGATTCACTCA 59.089 38.462 0.00 0.00 0.00 3.41
5033 5891 7.591795 CGTATTTTAGAGCGTAGATTCACTCAT 59.408 37.037 0.00 0.00 0.00 2.90
5034 5892 9.250624 GTATTTTAGAGCGTAGATTCACTCATT 57.749 33.333 0.00 0.00 0.00 2.57
5035 5893 7.757097 TTTTAGAGCGTAGATTCACTCATTC 57.243 36.000 0.00 0.00 0.00 2.67
5036 5894 6.701145 TTAGAGCGTAGATTCACTCATTCT 57.299 37.500 0.00 0.00 0.00 2.40
5037 5895 4.930963 AGAGCGTAGATTCACTCATTCTG 58.069 43.478 0.00 0.00 0.00 3.02
5038 5896 3.452474 AGCGTAGATTCACTCATTCTGC 58.548 45.455 0.00 0.00 0.00 4.26
5039 5897 2.541762 GCGTAGATTCACTCATTCTGCC 59.458 50.000 0.00 0.00 0.00 4.85
5040 5898 3.126831 CGTAGATTCACTCATTCTGCCC 58.873 50.000 0.00 0.00 0.00 5.36
5041 5899 2.725221 AGATTCACTCATTCTGCCCC 57.275 50.000 0.00 0.00 0.00 5.80
5042 5900 1.134280 AGATTCACTCATTCTGCCCCG 60.134 52.381 0.00 0.00 0.00 5.73
5043 5901 0.620556 ATTCACTCATTCTGCCCCGT 59.379 50.000 0.00 0.00 0.00 5.28
5044 5902 1.271856 TTCACTCATTCTGCCCCGTA 58.728 50.000 0.00 0.00 0.00 4.02
5045 5903 1.496060 TCACTCATTCTGCCCCGTAT 58.504 50.000 0.00 0.00 0.00 3.06
5046 5904 1.138859 TCACTCATTCTGCCCCGTATG 59.861 52.381 0.00 0.00 0.00 2.39
5047 5905 1.134401 CACTCATTCTGCCCCGTATGT 60.134 52.381 0.00 0.00 0.00 2.29
5048 5906 2.102420 CACTCATTCTGCCCCGTATGTA 59.898 50.000 0.00 0.00 0.00 2.29
5049 5907 2.365617 ACTCATTCTGCCCCGTATGTAG 59.634 50.000 0.00 0.00 0.00 2.74
5050 5908 2.365617 CTCATTCTGCCCCGTATGTAGT 59.634 50.000 0.00 0.00 0.00 2.73
5051 5909 2.364324 TCATTCTGCCCCGTATGTAGTC 59.636 50.000 0.00 0.00 0.00 2.59
5052 5910 1.117150 TTCTGCCCCGTATGTAGTCC 58.883 55.000 0.00 0.00 0.00 3.85
5053 5911 0.032912 TCTGCCCCGTATGTAGTCCA 60.033 55.000 0.00 0.00 0.00 4.02
5054 5912 1.048601 CTGCCCCGTATGTAGTCCAT 58.951 55.000 0.00 0.00 37.58 3.41
5055 5913 2.158430 TCTGCCCCGTATGTAGTCCATA 60.158 50.000 0.00 0.00 34.86 2.74
5056 5914 2.832129 CTGCCCCGTATGTAGTCCATAT 59.168 50.000 0.00 0.00 38.29 1.78
5057 5915 3.244582 TGCCCCGTATGTAGTCCATATT 58.755 45.455 0.00 0.00 38.29 1.28
5058 5916 4.418359 TGCCCCGTATGTAGTCCATATTA 58.582 43.478 0.00 0.00 38.29 0.98
5059 5917 4.464951 TGCCCCGTATGTAGTCCATATTAG 59.535 45.833 0.00 0.00 38.29 1.73
5060 5918 4.708421 GCCCCGTATGTAGTCCATATTAGA 59.292 45.833 0.00 0.00 38.29 2.10
5061 5919 5.186409 GCCCCGTATGTAGTCCATATTAGAA 59.814 44.000 0.00 0.00 38.29 2.10
5062 5920 6.127140 GCCCCGTATGTAGTCCATATTAGAAT 60.127 42.308 0.00 0.00 38.29 2.40
5063 5921 7.490000 CCCCGTATGTAGTCCATATTAGAATC 58.510 42.308 0.00 0.00 38.29 2.52
5064 5922 7.342284 CCCCGTATGTAGTCCATATTAGAATCT 59.658 40.741 0.00 0.00 38.29 2.40
5065 5923 8.750298 CCCGTATGTAGTCCATATTAGAATCTT 58.250 37.037 0.00 0.00 38.29 2.40
5094 5952 9.774413 AAAAGACTTATATATAGAAACGGTGGG 57.226 33.333 0.00 0.00 0.00 4.61
5095 5953 8.716674 AAGACTTATATATAGAAACGGTGGGA 57.283 34.615 0.00 0.00 0.00 4.37
5096 5954 8.350852 AGACTTATATATAGAAACGGTGGGAG 57.649 38.462 0.00 0.00 0.00 4.30
5097 5955 7.949006 AGACTTATATATAGAAACGGTGGGAGT 59.051 37.037 0.00 0.00 0.00 3.85
5110 5968 5.391256 ACGGTGGGAGTACATATCATCTAA 58.609 41.667 0.00 0.00 0.00 2.10
5116 5974 4.142138 GGAGTACATATCATCTAAGCGGGG 60.142 50.000 0.00 0.00 0.00 5.73
5157 6025 6.094186 TGTTCACAAGTTATAGCAAACACACA 59.906 34.615 0.00 0.00 0.00 3.72
5165 6033 1.303309 AGCAAACACACAGACTCTGC 58.697 50.000 5.92 0.00 34.37 4.26
5422 6294 4.980805 TCCACCCGCGAACTGCAC 62.981 66.667 8.23 0.00 46.97 4.57
5440 6318 2.348032 GCACGAAGCGATAGAATTGAGC 60.348 50.000 0.00 0.00 39.76 4.26
5450 6328 1.742761 AGAATTGAGCACCATGTCCG 58.257 50.000 0.00 0.00 0.00 4.79
5451 6329 1.003580 AGAATTGAGCACCATGTCCGT 59.996 47.619 0.00 0.00 0.00 4.69
5462 6340 1.974957 CCATGTCCGTGTATGGGGATA 59.025 52.381 0.00 0.00 40.11 2.59
5500 6378 1.566298 AATGGAGGAGCTGTGGGGTC 61.566 60.000 0.00 0.00 41.31 4.46
5537 6415 3.379445 GCGAACCGGACTCCCTGA 61.379 66.667 9.46 0.00 0.00 3.86
5558 6436 2.001812 GCATGAGCTCTTCTTCGTCA 57.998 50.000 16.19 0.00 37.91 4.35
5564 6442 1.975327 CTCTTCTTCGTCAGGGCCA 59.025 57.895 6.18 0.00 0.00 5.36
5615 6493 3.432890 CCCTTCTCAGATACTTCCTTGCC 60.433 52.174 0.00 0.00 0.00 4.52
5655 6533 3.277142 TGATCTGCAGCATCAAGACAT 57.723 42.857 19.88 3.04 0.00 3.06
5665 6543 5.526115 CAGCATCAAGACATTCAACTTGTT 58.474 37.500 0.00 0.00 42.50 2.83
5733 6611 3.122297 GCTACTCATGCTCAGCTTACAG 58.878 50.000 0.00 0.00 0.00 2.74
5795 6673 8.674607 AGCTACCTAGGAAAATAAACATTTTCG 58.325 33.333 17.98 5.73 46.18 3.46
5826 6704 1.105759 GCAGACCAGGATCATTGCCC 61.106 60.000 0.00 0.00 0.00 5.36
5844 6722 2.685388 GCCCAGTTTAAGAGCAGAATCC 59.315 50.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.120108 ACCTTACCAATGGCTAGGCTAA 58.880 45.455 18.18 6.34 32.03 3.09
4 5 2.704065 GACCTTACCAATGGCTAGGCTA 59.296 50.000 18.18 4.39 32.03 3.93
5 6 1.490910 GACCTTACCAATGGCTAGGCT 59.509 52.381 18.18 7.37 32.03 4.58
6 7 1.477014 GGACCTTACCAATGGCTAGGC 60.477 57.143 17.21 9.85 32.03 3.93
7 8 1.843851 TGGACCTTACCAATGGCTAGG 59.156 52.381 16.08 16.08 36.96 3.02
8 9 3.644966 TTGGACCTTACCAATGGCTAG 57.355 47.619 0.00 0.00 43.79 3.42
158 181 3.387699 ACGTGGTGGTGATCATATCATGA 59.612 43.478 17.37 0.00 42.04 3.07
161 184 3.069016 GGTACGTGGTGGTGATCATATCA 59.931 47.826 0.00 0.00 36.84 2.15
165 188 1.207089 CTGGTACGTGGTGGTGATCAT 59.793 52.381 0.00 0.00 0.00 2.45
166 189 0.606096 CTGGTACGTGGTGGTGATCA 59.394 55.000 0.00 0.00 0.00 2.92
177 200 1.321474 TCCACGAAACTCTGGTACGT 58.679 50.000 0.00 0.00 38.38 3.57
181 204 0.468226 TGCTTCCACGAAACTCTGGT 59.532 50.000 0.00 0.00 0.00 4.00
183 206 1.871080 AGTGCTTCCACGAAACTCTG 58.129 50.000 0.00 0.00 46.62 3.35
184 207 2.213499 CAAGTGCTTCCACGAAACTCT 58.787 47.619 0.00 0.00 46.62 3.24
186 209 0.663153 GCAAGTGCTTCCACGAAACT 59.337 50.000 0.00 0.00 46.62 2.66
187 210 0.657368 CGCAAGTGCTTCCACGAAAC 60.657 55.000 1.21 0.00 46.62 2.78
188 211 1.646540 CGCAAGTGCTTCCACGAAA 59.353 52.632 1.21 0.00 46.62 3.46
189 212 3.329231 CGCAAGTGCTTCCACGAA 58.671 55.556 1.21 0.00 46.62 3.85
196 219 8.592471 ATTCGAGAAAGAAAACGCAAGTGCTT 62.592 38.462 1.21 0.00 41.01 3.91
197 220 7.211835 ATTCGAGAAAGAAAACGCAAGTGCT 62.212 40.000 1.21 0.00 41.01 4.40
198 221 5.077035 ATTCGAGAAAGAAAACGCAAGTGC 61.077 41.667 0.00 0.00 41.01 4.40
199 222 4.527564 ATTCGAGAAAGAAAACGCAAGTG 58.472 39.130 0.00 0.00 41.01 3.16
200 223 4.272504 TGATTCGAGAAAGAAAACGCAAGT 59.727 37.500 0.00 0.00 42.09 3.16
201 224 4.772434 TGATTCGAGAAAGAAAACGCAAG 58.228 39.130 0.00 0.00 37.19 4.01
202 225 4.272504 ACTGATTCGAGAAAGAAAACGCAA 59.727 37.500 0.00 0.00 33.43 4.85
203 226 3.807622 ACTGATTCGAGAAAGAAAACGCA 59.192 39.130 0.00 0.00 33.43 5.24
242 265 1.063649 GCTTGAGGATGCATGCGTG 59.936 57.895 19.18 0.09 30.80 5.34
243 266 0.178767 TAGCTTGAGGATGCATGCGT 59.821 50.000 13.43 13.43 41.99 5.24
244 267 0.866427 CTAGCTTGAGGATGCATGCG 59.134 55.000 14.09 0.00 41.99 4.73
266 289 1.395954 CACTTCTCATCGACGTCCGTA 59.604 52.381 10.58 0.00 39.75 4.02
267 290 0.168348 CACTTCTCATCGACGTCCGT 59.832 55.000 10.58 0.00 39.75 4.69
268 291 0.523546 CCACTTCTCATCGACGTCCG 60.524 60.000 10.58 5.50 40.25 4.79
286 324 3.259064 ACACAATGTATAGTGCACGTCC 58.741 45.455 12.01 1.50 39.30 4.79
320 362 2.180131 GACGGCGTGACTCTACGTGT 62.180 60.000 21.19 0.00 45.36 4.49
321 363 1.511464 GACGGCGTGACTCTACGTG 60.511 63.158 21.19 0.00 45.36 4.49
356 418 6.418819 TCATCGCACGCATGATATATATGAAG 59.581 38.462 0.00 0.00 0.00 3.02
358 420 5.830912 TCATCGCACGCATGATATATATGA 58.169 37.500 0.00 0.00 0.00 2.15
445 507 2.091720 TCGCTAGGGTGGTTAGGTATCA 60.092 50.000 6.70 0.00 0.00 2.15
450 512 2.029307 GCCTCGCTAGGGTGGTTAGG 62.029 65.000 23.92 15.80 43.87 2.69
451 513 1.442148 GCCTCGCTAGGGTGGTTAG 59.558 63.158 23.92 7.45 43.87 2.34
460 522 3.755905 TGATGATTAGAGAGCCTCGCTAG 59.244 47.826 5.33 0.00 39.88 3.42
464 526 4.780275 TGATGATGATTAGAGAGCCTCG 57.220 45.455 0.00 0.00 35.36 4.63
503 750 3.568853 ACCATCGTACACTACCATCTAGC 59.431 47.826 0.00 0.00 0.00 3.42
504 751 5.520632 CAACCATCGTACACTACCATCTAG 58.479 45.833 0.00 0.00 0.00 2.43
505 752 4.202080 GCAACCATCGTACACTACCATCTA 60.202 45.833 0.00 0.00 0.00 1.98
506 753 3.430374 GCAACCATCGTACACTACCATCT 60.430 47.826 0.00 0.00 0.00 2.90
510 757 2.373540 TGCAACCATCGTACACTACC 57.626 50.000 0.00 0.00 0.00 3.18
580 828 1.298713 CGAACTCGATCGCCTCCTG 60.299 63.158 11.09 0.00 43.02 3.86
582 830 2.026301 CCGAACTCGATCGCCTCC 59.974 66.667 11.09 0.00 43.02 4.30
584 832 4.208686 GGCCGAACTCGATCGCCT 62.209 66.667 11.09 0.00 43.02 5.52
585 833 4.508128 TGGCCGAACTCGATCGCC 62.508 66.667 11.09 4.28 43.02 5.54
587 835 2.949678 CGTGGCCGAACTCGATCG 60.950 66.667 9.36 9.36 43.02 3.69
588 836 0.179156 TAACGTGGCCGAACTCGATC 60.179 55.000 0.00 0.00 43.02 3.69
673 922 5.821633 CCACAAGGACAACCAAAACGGTG 62.822 52.174 0.00 0.00 42.91 4.94
675 924 1.202359 CCACAAGGACAACCAAAACGG 60.202 52.381 0.00 0.00 38.94 4.44
676 925 1.474879 ACCACAAGGACAACCAAAACG 59.525 47.619 0.00 0.00 38.69 3.60
677 926 3.258228 CAACCACAAGGACAACCAAAAC 58.742 45.455 0.00 0.00 38.69 2.43
700 962 3.244422 TGTGTTACCTGGCTGAACTTAGG 60.244 47.826 0.00 0.00 36.39 2.69
711 973 4.066490 TCGTTAAACCATGTGTTACCTGG 58.934 43.478 0.00 0.00 39.42 4.45
717 979 1.264826 GGCGTCGTTAAACCATGTGTT 59.735 47.619 0.00 0.00 39.43 3.32
846 1112 4.907034 ACAGCTATCGTCGCGCCG 62.907 66.667 1.71 1.71 0.00 6.46
929 1199 2.367512 GAGGGAGGGTCTGGGCAT 60.368 66.667 0.00 0.00 0.00 4.40
931 1201 2.766229 GAGAGGGAGGGTCTGGGC 60.766 72.222 0.00 0.00 0.00 5.36
933 1203 1.687493 GTGGAGAGGGAGGGTCTGG 60.687 68.421 0.00 0.00 0.00 3.86
935 1205 2.781406 GGTGGAGAGGGAGGGTCT 59.219 66.667 0.00 0.00 0.00 3.85
936 1206 2.365768 GGGTGGAGAGGGAGGGTC 60.366 72.222 0.00 0.00 0.00 4.46
956 1233 3.252284 CAGAGCACCTGGGTGGGT 61.252 66.667 19.69 7.56 45.49 4.51
986 1263 2.292785 AAAGTTGGGCTGGGTTCGGT 62.293 55.000 0.00 0.00 0.00 4.69
1054 1332 4.373116 CCACGTGAGGTCCACCCG 62.373 72.222 19.30 0.00 42.76 5.28
1055 1333 2.920912 TCCACGTGAGGTCCACCC 60.921 66.667 19.30 0.00 42.76 4.61
1056 1334 2.342648 GTCCACGTGAGGTCCACC 59.657 66.667 19.30 0.00 42.76 4.61
1057 1335 1.874345 ATCGTCCACGTGAGGTCCAC 61.874 60.000 19.30 2.61 42.30 4.02
1058 1336 1.605451 ATCGTCCACGTGAGGTCCA 60.605 57.895 19.30 0.00 40.80 4.02
1059 1337 1.153823 CATCGTCCACGTGAGGTCC 60.154 63.158 19.30 0.00 40.80 4.46
1060 1338 1.153823 CCATCGTCCACGTGAGGTC 60.154 63.158 19.30 0.00 40.80 3.85
1066 1345 2.052690 CCTCTCCCATCGTCCACGT 61.053 63.158 0.00 0.00 40.80 4.49
1441 1730 1.138863 AGATCATGGGGCAGGGGATC 61.139 60.000 0.00 0.00 35.70 3.36
1442 1731 0.703758 AAGATCATGGGGCAGGGGAT 60.704 55.000 0.00 0.00 0.00 3.85
1443 1732 1.309013 AAGATCATGGGGCAGGGGA 60.309 57.895 0.00 0.00 0.00 4.81
1444 1733 1.152368 GAAGATCATGGGGCAGGGG 59.848 63.158 0.00 0.00 0.00 4.79
1468 1757 2.929592 GCTAATTCACCGGACGAGTTGT 60.930 50.000 9.46 0.00 0.00 3.32
1472 1761 1.927174 CTTGCTAATTCACCGGACGAG 59.073 52.381 9.46 0.00 0.00 4.18
1604 1893 0.960861 GTCAAGGCTGGGTTAGTGCC 60.961 60.000 0.00 0.00 46.42 5.01
1688 2021 4.022935 TGTTGTGCATGTTCAGGAATTCTC 60.023 41.667 5.23 0.00 0.00 2.87
1709 2042 4.503123 GCCAAAGGTTAGCAAGGAAAATGT 60.503 41.667 0.00 0.00 0.00 2.71
1746 2101 1.330829 GCAACTAATCCAACGCTAGGC 59.669 52.381 0.00 0.00 0.00 3.93
1786 2141 3.754965 TGACATTTCCTCCCAAAGTCAG 58.245 45.455 0.00 0.00 31.63 3.51
1795 2150 0.329596 AGGGTGCTGACATTTCCTCC 59.670 55.000 0.00 0.00 0.00 4.30
1867 2404 0.750850 TACGTCTGGCCTGCCTAATC 59.249 55.000 9.97 0.00 36.94 1.75
1868 2405 0.753262 CTACGTCTGGCCTGCCTAAT 59.247 55.000 9.97 0.00 36.94 1.73
1869 2406 1.327690 CCTACGTCTGGCCTGCCTAA 61.328 60.000 9.97 0.00 36.94 2.69
1962 2499 9.794685 GAGAAAAGGGAAATGAATGAATAGAAC 57.205 33.333 0.00 0.00 0.00 3.01
1972 2532 5.316987 GAGAGTGGAGAAAAGGGAAATGAA 58.683 41.667 0.00 0.00 0.00 2.57
1973 2533 4.263506 GGAGAGTGGAGAAAAGGGAAATGA 60.264 45.833 0.00 0.00 0.00 2.57
1974 2534 4.013050 GGAGAGTGGAGAAAAGGGAAATG 58.987 47.826 0.00 0.00 0.00 2.32
1975 2535 3.919554 AGGAGAGTGGAGAAAAGGGAAAT 59.080 43.478 0.00 0.00 0.00 2.17
1976 2536 3.327439 AGGAGAGTGGAGAAAAGGGAAA 58.673 45.455 0.00 0.00 0.00 3.13
1989 2549 4.093998 CACGAATTCCATTGAAGGAGAGTG 59.906 45.833 0.00 0.00 39.25 3.51
1990 2550 4.256920 CACGAATTCCATTGAAGGAGAGT 58.743 43.478 0.00 0.00 39.25 3.24
2007 2568 5.418524 TGTGGTTACTATAGTTAGGCACGAA 59.581 40.000 11.40 0.00 0.00 3.85
2010 2571 6.479001 CACATGTGGTTACTATAGTTAGGCAC 59.521 42.308 18.51 1.10 0.00 5.01
2037 2598 5.049405 GCTTGACATATCTTATCCAAACGGG 60.049 44.000 0.00 0.00 38.37 5.28
2068 2630 7.256439 CCATCATCATAACATCCACTTCCTCTA 60.256 40.741 0.00 0.00 0.00 2.43
2106 2668 2.746904 TGGATGATGTAGGTGCAAAACG 59.253 45.455 0.00 0.00 0.00 3.60
2140 2702 3.462982 ACTGAAGCACGATGTTTGTGTA 58.537 40.909 0.00 0.00 39.53 2.90
2219 2785 0.947244 AATTTGATCGCCATCTCGCC 59.053 50.000 0.00 0.00 0.00 5.54
2246 2812 7.944729 ATGCTGGTGTCTAAAATTACTGAAT 57.055 32.000 0.00 0.00 0.00 2.57
2261 2827 5.437060 ACCGAAAGATAAATATGCTGGTGT 58.563 37.500 0.00 0.00 0.00 4.16
2262 2828 5.527214 TGACCGAAAGATAAATATGCTGGTG 59.473 40.000 0.00 0.00 0.00 4.17
2263 2829 5.680619 TGACCGAAAGATAAATATGCTGGT 58.319 37.500 0.00 0.00 0.00 4.00
2283 2849 8.863049 CAACTGAAATGGCTGTAATATTTTGAC 58.137 33.333 0.00 0.00 0.00 3.18
2347 2968 8.999431 TCATAAAGATTTAGTTTCAGCGACTTT 58.001 29.630 0.00 0.00 0.00 2.66
2350 2971 9.052080 GTTTCATAAAGATTTAGTTTCAGCGAC 57.948 33.333 0.00 0.00 0.00 5.19
2370 2991 5.700373 CCATGGTTTTGAATTTCGGTTTCAT 59.300 36.000 2.57 0.00 33.37 2.57
2406 3027 0.107654 AGCTGGGATTCGTTAGGCAC 60.108 55.000 0.00 0.00 0.00 5.01
2439 3060 0.525668 GTGCGTAGACTCGGTCATGG 60.526 60.000 6.78 0.00 34.60 3.66
2442 3063 1.174078 TTGGTGCGTAGACTCGGTCA 61.174 55.000 6.78 0.00 34.60 4.02
2443 3064 0.038892 TTTGGTGCGTAGACTCGGTC 60.039 55.000 0.00 0.00 0.00 4.79
2444 3065 0.038526 CTTTGGTGCGTAGACTCGGT 60.039 55.000 0.00 0.00 0.00 4.69
2445 3066 0.736325 CCTTTGGTGCGTAGACTCGG 60.736 60.000 0.00 0.00 0.00 4.63
2446 3067 0.736325 CCCTTTGGTGCGTAGACTCG 60.736 60.000 0.00 0.00 0.00 4.18
2447 3068 0.391263 CCCCTTTGGTGCGTAGACTC 60.391 60.000 0.00 0.00 0.00 3.36
2448 3069 0.834687 TCCCCTTTGGTGCGTAGACT 60.835 55.000 0.00 0.00 34.77 3.24
2449 3070 0.035739 TTCCCCTTTGGTGCGTAGAC 59.964 55.000 0.00 0.00 34.77 2.59
2450 3071 0.323629 CTTCCCCTTTGGTGCGTAGA 59.676 55.000 0.00 0.00 34.77 2.59
2451 3072 0.676782 CCTTCCCCTTTGGTGCGTAG 60.677 60.000 0.00 0.00 34.77 3.51
2452 3073 1.377229 CCTTCCCCTTTGGTGCGTA 59.623 57.895 0.00 0.00 34.77 4.42
2453 3074 2.115266 CCTTCCCCTTTGGTGCGT 59.885 61.111 0.00 0.00 34.77 5.24
2454 3075 2.115266 ACCTTCCCCTTTGGTGCG 59.885 61.111 0.00 0.00 34.77 5.34
2455 3076 3.777556 CACCTTCCCCTTTGGTGC 58.222 61.111 0.00 0.00 43.61 5.01
2457 3078 0.478507 CTGTCACCTTCCCCTTTGGT 59.521 55.000 0.00 0.00 34.77 3.67
2458 3079 0.251341 CCTGTCACCTTCCCCTTTGG 60.251 60.000 0.00 0.00 0.00 3.28
2459 3080 0.251341 CCCTGTCACCTTCCCCTTTG 60.251 60.000 0.00 0.00 0.00 2.77
2460 3081 1.435346 CCCCTGTCACCTTCCCCTTT 61.435 60.000 0.00 0.00 0.00 3.11
2461 3082 1.852626 CCCCTGTCACCTTCCCCTT 60.853 63.158 0.00 0.00 0.00 3.95
2462 3083 2.204151 CCCCTGTCACCTTCCCCT 60.204 66.667 0.00 0.00 0.00 4.79
2463 3084 2.531942 ACCCCTGTCACCTTCCCC 60.532 66.667 0.00 0.00 0.00 4.81
2464 3085 2.955881 CGACCCCTGTCACCTTCCC 61.956 68.421 0.00 0.00 41.85 3.97
2465 3086 2.663196 CGACCCCTGTCACCTTCC 59.337 66.667 0.00 0.00 41.85 3.46
2466 3087 2.663196 CCGACCCCTGTCACCTTC 59.337 66.667 0.00 0.00 41.85 3.46
2467 3088 3.637273 GCCGACCCCTGTCACCTT 61.637 66.667 0.00 0.00 41.85 3.50
2478 3099 1.095807 GCTGTTTAGATGGGCCGACC 61.096 60.000 0.00 0.00 40.81 4.79
2479 3100 0.392461 TGCTGTTTAGATGGGCCGAC 60.392 55.000 0.00 0.00 0.00 4.79
2480 3101 0.392461 GTGCTGTTTAGATGGGCCGA 60.392 55.000 0.00 0.00 0.00 5.54
2481 3102 0.392998 AGTGCTGTTTAGATGGGCCG 60.393 55.000 0.00 0.00 0.00 6.13
2482 3103 1.839424 AAGTGCTGTTTAGATGGGCC 58.161 50.000 0.00 0.00 0.00 5.80
2483 3104 4.260784 CGAATAAGTGCTGTTTAGATGGGC 60.261 45.833 0.00 0.00 0.00 5.36
2484 3105 5.006746 GTCGAATAAGTGCTGTTTAGATGGG 59.993 44.000 0.00 0.00 0.00 4.00
2485 3106 5.006746 GGTCGAATAAGTGCTGTTTAGATGG 59.993 44.000 0.00 0.00 0.00 3.51
2486 3107 5.006746 GGGTCGAATAAGTGCTGTTTAGATG 59.993 44.000 0.00 0.00 0.00 2.90
2487 3108 5.104900 AGGGTCGAATAAGTGCTGTTTAGAT 60.105 40.000 0.00 0.00 0.00 1.98
2488 3109 4.222145 AGGGTCGAATAAGTGCTGTTTAGA 59.778 41.667 0.00 0.00 0.00 2.10
2489 3110 4.504858 AGGGTCGAATAAGTGCTGTTTAG 58.495 43.478 0.00 0.00 0.00 1.85
2490 3111 4.222145 AGAGGGTCGAATAAGTGCTGTTTA 59.778 41.667 0.00 0.00 0.00 2.01
2491 3112 3.008049 AGAGGGTCGAATAAGTGCTGTTT 59.992 43.478 0.00 0.00 0.00 2.83
2492 3113 2.567615 AGAGGGTCGAATAAGTGCTGTT 59.432 45.455 0.00 0.00 0.00 3.16
2493 3114 2.166664 GAGAGGGTCGAATAAGTGCTGT 59.833 50.000 0.00 0.00 0.00 4.40
2494 3115 2.815478 GAGAGGGTCGAATAAGTGCTG 58.185 52.381 0.00 0.00 0.00 4.41
2506 3127 2.125633 GGGTTTCGCGAGAGGGTC 60.126 66.667 9.59 0.00 45.36 4.46
2507 3128 2.168666 GAAGGGTTTCGCGAGAGGGT 62.169 60.000 9.59 0.00 45.36 4.34
2508 3129 1.448013 GAAGGGTTTCGCGAGAGGG 60.448 63.158 9.59 0.00 43.69 4.30
2509 3130 1.448013 GGAAGGGTTTCGCGAGAGG 60.448 63.158 9.59 0.00 43.69 3.69
2510 3131 1.448013 GGGAAGGGTTTCGCGAGAG 60.448 63.158 9.59 0.00 43.69 3.20
2511 3132 2.660802 GGGAAGGGTTTCGCGAGA 59.339 61.111 9.59 0.43 36.67 4.04
2515 3136 2.045242 GGGAGGGAAGGGTTTCGC 60.045 66.667 0.00 0.00 44.23 4.70
2516 3137 2.267961 CGGGAGGGAAGGGTTTCG 59.732 66.667 0.00 0.00 33.98 3.46
2517 3138 2.045242 GCGGGAGGGAAGGGTTTC 60.045 66.667 0.00 0.00 0.00 2.78
2518 3139 2.856988 TGCGGGAGGGAAGGGTTT 60.857 61.111 0.00 0.00 0.00 3.27
2519 3140 3.647771 GTGCGGGAGGGAAGGGTT 61.648 66.667 0.00 0.00 0.00 4.11
2520 3141 4.658786 AGTGCGGGAGGGAAGGGT 62.659 66.667 0.00 0.00 0.00 4.34
2521 3142 4.101448 CAGTGCGGGAGGGAAGGG 62.101 72.222 0.00 0.00 0.00 3.95
2522 3143 4.785453 GCAGTGCGGGAGGGAAGG 62.785 72.222 0.00 0.00 0.00 3.46
2523 3144 2.359169 TAGCAGTGCGGGAGGGAAG 61.359 63.158 10.00 0.00 0.00 3.46
2524 3145 2.284331 TAGCAGTGCGGGAGGGAA 60.284 61.111 10.00 0.00 0.00 3.97
2525 3146 3.075005 GTAGCAGTGCGGGAGGGA 61.075 66.667 10.00 0.00 0.00 4.20
2526 3147 4.162690 GGTAGCAGTGCGGGAGGG 62.163 72.222 10.00 0.00 0.00 4.30
2527 3148 4.162690 GGGTAGCAGTGCGGGAGG 62.163 72.222 10.00 0.00 0.00 4.30
2528 3149 4.514577 CGGGTAGCAGTGCGGGAG 62.515 72.222 10.00 0.00 0.00 4.30
2530 3151 4.514577 CTCGGGTAGCAGTGCGGG 62.515 72.222 10.00 0.00 0.00 6.13
2531 3152 3.417275 CTCTCGGGTAGCAGTGCGG 62.417 68.421 10.00 0.00 0.00 5.69
2532 3153 2.103143 CTCTCGGGTAGCAGTGCG 59.897 66.667 10.00 0.00 0.00 5.34
2533 3154 2.496817 CCTCTCGGGTAGCAGTGC 59.503 66.667 7.13 7.13 0.00 4.40
2534 3155 2.496817 GCCTCTCGGGTAGCAGTG 59.503 66.667 0.00 0.00 37.43 3.66
2535 3156 3.141488 CGCCTCTCGGGTAGCAGT 61.141 66.667 0.00 0.00 37.43 4.40
2559 3180 3.934962 GAGGATCTGGGCGCCCTC 61.935 72.222 43.34 32.32 38.47 4.30
2564 3185 3.917760 GACGGGAGGATCTGGGCG 61.918 72.222 0.00 0.00 33.73 6.13
2565 3186 3.917760 CGACGGGAGGATCTGGGC 61.918 72.222 0.00 0.00 33.73 5.36
2566 3187 3.917760 GCGACGGGAGGATCTGGG 61.918 72.222 0.00 0.00 33.73 4.45
2567 3188 3.917760 GGCGACGGGAGGATCTGG 61.918 72.222 0.00 0.00 33.73 3.86
2568 3189 3.144120 CTGGCGACGGGAGGATCTG 62.144 68.421 0.00 0.00 33.73 2.90
2569 3190 2.835431 CTGGCGACGGGAGGATCT 60.835 66.667 0.00 0.00 33.73 2.75
2570 3191 4.593864 GCTGGCGACGGGAGGATC 62.594 72.222 0.00 0.00 37.13 3.36
2583 3204 4.101077 AGGAGGAGGGGAGGCTGG 62.101 72.222 0.00 0.00 0.00 4.85
2584 3205 2.445654 GAGGAGGAGGGGAGGCTG 60.446 72.222 0.00 0.00 0.00 4.85
2585 3206 3.773154 GGAGGAGGAGGGGAGGCT 61.773 72.222 0.00 0.00 0.00 4.58
2586 3207 4.890306 GGGAGGAGGAGGGGAGGC 62.890 77.778 0.00 0.00 0.00 4.70
2587 3208 4.548513 CGGGAGGAGGAGGGGAGG 62.549 77.778 0.00 0.00 0.00 4.30
2593 3214 4.787280 AGGGTGCGGGAGGAGGAG 62.787 72.222 0.00 0.00 0.00 3.69
2594 3215 4.779733 GAGGGTGCGGGAGGAGGA 62.780 72.222 0.00 0.00 0.00 3.71
2627 3248 4.293648 AAAAACAAGCCCCGCCGC 62.294 61.111 0.00 0.00 0.00 6.53
2628 3249 2.049526 GAAAAACAAGCCCCGCCG 60.050 61.111 0.00 0.00 0.00 6.46
2629 3250 2.154798 GAGGAAAAACAAGCCCCGCC 62.155 60.000 0.00 0.00 0.00 6.13
2630 3251 1.289066 GAGGAAAAACAAGCCCCGC 59.711 57.895 0.00 0.00 0.00 6.13
2631 3252 1.862602 CGGAGGAAAAACAAGCCCCG 61.863 60.000 0.00 0.00 32.22 5.73
2632 3253 1.964448 CGGAGGAAAAACAAGCCCC 59.036 57.895 0.00 0.00 0.00 5.80
2633 3254 1.289066 GCGGAGGAAAAACAAGCCC 59.711 57.895 0.00 0.00 0.00 5.19
2634 3255 1.081442 CGCGGAGGAAAAACAAGCC 60.081 57.895 0.00 0.00 0.00 4.35
2635 3256 1.729484 GCGCGGAGGAAAAACAAGC 60.729 57.895 8.83 0.00 0.00 4.01
2636 3257 1.440353 CGCGCGGAGGAAAAACAAG 60.440 57.895 24.84 0.00 0.00 3.16
2637 3258 1.231958 ATCGCGCGGAGGAAAAACAA 61.232 50.000 31.69 5.82 0.00 2.83
2638 3259 1.669760 ATCGCGCGGAGGAAAAACA 60.670 52.632 31.69 6.44 0.00 2.83
2639 3260 1.226018 CATCGCGCGGAGGAAAAAC 60.226 57.895 31.69 0.00 0.00 2.43
2640 3261 2.395360 CCATCGCGCGGAGGAAAAA 61.395 57.895 31.69 8.20 0.00 1.94
2641 3262 2.817834 CCATCGCGCGGAGGAAAA 60.818 61.111 31.69 9.10 0.00 2.29
2642 3263 4.830765 CCCATCGCGCGGAGGAAA 62.831 66.667 32.85 15.27 0.00 3.13
2662 3283 3.654020 GATGAAGATGCCCGCGCC 61.654 66.667 0.00 0.00 0.00 6.53
2663 3284 4.005472 CGATGAAGATGCCCGCGC 62.005 66.667 0.00 0.00 0.00 6.86
2664 3285 2.279451 TCGATGAAGATGCCCGCG 60.279 61.111 0.00 0.00 0.00 6.46
2665 3286 1.227380 ACTCGATGAAGATGCCCGC 60.227 57.895 0.00 0.00 0.00 6.13
2666 3287 1.493950 GCACTCGATGAAGATGCCCG 61.494 60.000 0.00 0.00 0.00 6.13
2667 3288 1.493950 CGCACTCGATGAAGATGCCC 61.494 60.000 0.00 0.00 38.10 5.36
2668 3289 1.493950 CCGCACTCGATGAAGATGCC 61.494 60.000 0.00 0.00 38.10 4.40
2669 3290 1.493950 CCCGCACTCGATGAAGATGC 61.494 60.000 0.00 0.00 38.10 3.91
2670 3291 1.493950 GCCCGCACTCGATGAAGATG 61.494 60.000 0.00 0.00 38.10 2.90
2671 3292 1.227380 GCCCGCACTCGATGAAGAT 60.227 57.895 0.00 0.00 38.10 2.40
2672 3293 2.184322 GCCCGCACTCGATGAAGA 59.816 61.111 0.00 0.00 38.10 2.87
2673 3294 3.257561 CGCCCGCACTCGATGAAG 61.258 66.667 0.00 0.00 38.10 3.02
2702 3323 3.812019 CGTAGCTCCACGTCCGCT 61.812 66.667 0.74 7.74 37.16 5.52
2951 3590 1.774217 TGTCCAAGCCACTCCCCTT 60.774 57.895 0.00 0.00 0.00 3.95
3211 3857 1.070786 GGTCACGAAGCTTCCCACA 59.929 57.895 20.62 0.00 0.00 4.17
3341 3988 2.202570 GGTCCGACGACATCCACG 60.203 66.667 0.00 0.00 41.13 4.94
3349 3996 1.677966 CTCCAGGAAGGTCCGACGA 60.678 63.158 0.00 0.00 42.75 4.20
3352 3999 2.038975 CCCTCCAGGAAGGTCCGA 59.961 66.667 0.00 0.00 42.75 4.55
3383 4030 1.822990 ACGCGGTGAGGATAGAAGAAA 59.177 47.619 12.47 0.00 0.00 2.52
3387 4034 1.027357 GGTACGCGGTGAGGATAGAA 58.973 55.000 12.47 0.00 0.00 2.10
3466 4115 0.978146 AGCCTCTGAAGCACCGGTAT 60.978 55.000 6.87 0.00 0.00 2.73
3508 4157 4.722700 GTGGCCGATGCACCCACT 62.723 66.667 16.21 0.00 44.32 4.00
3595 4245 0.749649 AGCATTGTCACGCCCAAAAA 59.250 45.000 0.00 0.00 0.00 1.94
3609 4259 1.224592 CTGGGGCGGAAGTAGCATT 59.775 57.895 0.00 0.00 36.08 3.56
3610 4260 2.911143 CTGGGGCGGAAGTAGCAT 59.089 61.111 0.00 0.00 36.08 3.79
3690 4340 1.062685 CTGCGTGCGTAGACTCGAT 59.937 57.895 3.68 0.00 0.00 3.59
3691 4341 1.571215 TTCTGCGTGCGTAGACTCGA 61.571 55.000 11.59 0.00 36.63 4.04
3692 4342 1.154282 TTCTGCGTGCGTAGACTCG 60.154 57.895 11.59 0.00 36.63 4.18
3700 4350 1.148157 CTAGATGGGTTCTGCGTGCG 61.148 60.000 0.00 0.00 35.79 5.34
3719 4369 4.156739 AGTTGGAGCAAGCAAATTACTAGC 59.843 41.667 0.00 0.00 0.00 3.42
3720 4370 5.886960 AGTTGGAGCAAGCAAATTACTAG 57.113 39.130 0.00 0.00 0.00 2.57
3753 4528 6.204555 AGAAATGTGGGAATGGGATTAATGT 58.795 36.000 0.00 0.00 0.00 2.71
3779 4554 7.835634 AAAATACGAGGAAGAAGAACTGATC 57.164 36.000 0.00 0.00 0.00 2.92
3856 4641 1.135915 AGTTCTACCATCTGCTGAGCG 59.864 52.381 0.00 0.00 0.00 5.03
3912 4748 3.438216 TCAGAAGATCAACCATGCCAA 57.562 42.857 0.00 0.00 0.00 4.52
3927 4763 5.610398 TGACAGTAACATGCTTCTTCAGAA 58.390 37.500 0.00 0.00 0.00 3.02
3974 4811 1.220749 GCCGGCCTTCACTATGTGA 59.779 57.895 18.11 0.00 41.09 3.58
4188 5025 2.185608 GAGCTTGGCGGAGAGGTC 59.814 66.667 0.00 0.00 33.83 3.85
4683 5541 2.668550 GCAAGCCTTCGTCCCGTT 60.669 61.111 0.00 0.00 0.00 4.44
4751 5609 2.667536 GCTCGCCGCATGATGGAT 60.668 61.111 8.49 0.00 38.92 3.41
4861 5719 9.574516 AACTACAAAGAAACATACAAGGAGAAT 57.425 29.630 0.00 0.00 0.00 2.40
4904 5762 9.720667 TGATTTTACATGCTAAGATGAAAATCG 57.279 29.630 16.49 0.00 39.31 3.34
4920 5778 9.836179 AGAGGGAGTATCTATCTGATTTTACAT 57.164 33.333 0.00 0.00 36.65 2.29
4927 5785 6.046643 AGGAACAGAGGGAGTATCTATCTGAT 59.953 42.308 14.47 0.00 44.71 2.90
5002 5860 8.781196 TGAATCTACGCTCTAAAATACGTCTAT 58.219 33.333 0.00 0.00 39.78 1.98
5003 5861 8.066595 GTGAATCTACGCTCTAAAATACGTCTA 58.933 37.037 0.00 0.00 39.78 2.59
5004 5862 6.911511 GTGAATCTACGCTCTAAAATACGTCT 59.088 38.462 0.00 0.00 39.78 4.18
5005 5863 6.911511 AGTGAATCTACGCTCTAAAATACGTC 59.088 38.462 0.00 0.00 39.78 4.34
5006 5864 6.793349 AGTGAATCTACGCTCTAAAATACGT 58.207 36.000 0.00 0.00 42.22 3.57
5007 5865 6.910972 TGAGTGAATCTACGCTCTAAAATACG 59.089 38.462 0.00 0.00 44.58 3.06
5008 5866 8.804688 ATGAGTGAATCTACGCTCTAAAATAC 57.195 34.615 0.00 0.00 44.58 1.89
5009 5867 9.464714 GAATGAGTGAATCTACGCTCTAAAATA 57.535 33.333 0.00 0.00 44.58 1.40
5010 5868 8.200792 AGAATGAGTGAATCTACGCTCTAAAAT 58.799 33.333 0.00 0.00 44.58 1.82
5011 5869 7.489435 CAGAATGAGTGAATCTACGCTCTAAAA 59.511 37.037 0.00 0.00 44.58 1.52
5012 5870 6.975197 CAGAATGAGTGAATCTACGCTCTAAA 59.025 38.462 0.00 0.00 44.58 1.85
5013 5871 6.499172 CAGAATGAGTGAATCTACGCTCTAA 58.501 40.000 0.00 0.00 44.58 2.10
5014 5872 5.506483 GCAGAATGAGTGAATCTACGCTCTA 60.506 44.000 0.00 0.00 44.58 2.43
5015 5873 4.736168 GCAGAATGAGTGAATCTACGCTCT 60.736 45.833 0.00 0.00 44.58 4.09
5016 5874 3.489047 GCAGAATGAGTGAATCTACGCTC 59.511 47.826 0.00 0.00 44.55 5.03
5017 5875 3.452474 GCAGAATGAGTGAATCTACGCT 58.548 45.455 0.00 0.00 39.69 5.07
5018 5876 2.541762 GGCAGAATGAGTGAATCTACGC 59.458 50.000 0.00 0.00 39.69 4.42
5019 5877 3.126831 GGGCAGAATGAGTGAATCTACG 58.873 50.000 0.00 0.00 39.69 3.51
5020 5878 3.471680 GGGGCAGAATGAGTGAATCTAC 58.528 50.000 0.00 0.00 39.69 2.59
5021 5879 2.103094 CGGGGCAGAATGAGTGAATCTA 59.897 50.000 0.00 0.00 39.69 1.98
5022 5880 1.134280 CGGGGCAGAATGAGTGAATCT 60.134 52.381 0.00 0.00 39.69 2.40
5023 5881 1.303309 CGGGGCAGAATGAGTGAATC 58.697 55.000 0.00 0.00 39.69 2.52
5024 5882 0.620556 ACGGGGCAGAATGAGTGAAT 59.379 50.000 0.00 0.00 39.69 2.57
5025 5883 1.271856 TACGGGGCAGAATGAGTGAA 58.728 50.000 0.00 0.00 39.69 3.18
5026 5884 1.138859 CATACGGGGCAGAATGAGTGA 59.861 52.381 0.00 0.00 39.69 3.41
5027 5885 1.134401 ACATACGGGGCAGAATGAGTG 60.134 52.381 0.00 0.00 39.69 3.51
5028 5886 1.204146 ACATACGGGGCAGAATGAGT 58.796 50.000 0.00 0.00 39.69 3.41
5029 5887 2.365617 ACTACATACGGGGCAGAATGAG 59.634 50.000 0.00 0.00 39.69 2.90
5030 5888 2.364324 GACTACATACGGGGCAGAATGA 59.636 50.000 0.00 0.00 39.69 2.57
5031 5889 2.548067 GGACTACATACGGGGCAGAATG 60.548 54.545 0.00 0.00 40.87 2.67
5032 5890 1.692519 GGACTACATACGGGGCAGAAT 59.307 52.381 0.00 0.00 0.00 2.40
5033 5891 1.117150 GGACTACATACGGGGCAGAA 58.883 55.000 0.00 0.00 0.00 3.02
5034 5892 0.032912 TGGACTACATACGGGGCAGA 60.033 55.000 0.00 0.00 0.00 4.26
5035 5893 1.048601 ATGGACTACATACGGGGCAG 58.951 55.000 0.00 0.00 38.26 4.85
5036 5894 2.385135 TATGGACTACATACGGGGCA 57.615 50.000 0.00 0.00 41.03 5.36
5037 5895 3.975168 AATATGGACTACATACGGGGC 57.025 47.619 0.00 0.00 44.41 5.80
5038 5896 6.845758 TTCTAATATGGACTACATACGGGG 57.154 41.667 0.00 0.00 44.41 5.73
5039 5897 8.294954 AGATTCTAATATGGACTACATACGGG 57.705 38.462 0.00 0.00 44.41 5.28
5068 5926 9.774413 CCCACCGTTTCTATATATAAGTCTTTT 57.226 33.333 0.00 0.00 0.00 2.27
5069 5927 9.151177 TCCCACCGTTTCTATATATAAGTCTTT 57.849 33.333 0.00 0.00 0.00 2.52
5070 5928 8.716674 TCCCACCGTTTCTATATATAAGTCTT 57.283 34.615 0.00 0.00 0.00 3.01
5071 5929 7.949006 ACTCCCACCGTTTCTATATATAAGTCT 59.051 37.037 0.00 0.00 0.00 3.24
5072 5930 8.120140 ACTCCCACCGTTTCTATATATAAGTC 57.880 38.462 0.00 0.00 0.00 3.01
5073 5931 9.018582 GTACTCCCACCGTTTCTATATATAAGT 57.981 37.037 0.00 0.00 0.00 2.24
5074 5932 9.017509 TGTACTCCCACCGTTTCTATATATAAG 57.982 37.037 0.00 0.00 0.00 1.73
5075 5933 8.938801 TGTACTCCCACCGTTTCTATATATAA 57.061 34.615 0.00 0.00 0.00 0.98
5077 5935 9.710818 ATATGTACTCCCACCGTTTCTATATAT 57.289 33.333 0.00 0.00 0.00 0.86
5078 5936 9.182214 GATATGTACTCCCACCGTTTCTATATA 57.818 37.037 0.00 0.00 0.00 0.86
5079 5937 7.672660 TGATATGTACTCCCACCGTTTCTATAT 59.327 37.037 0.00 0.00 0.00 0.86
5080 5938 7.005902 TGATATGTACTCCCACCGTTTCTATA 58.994 38.462 0.00 0.00 0.00 1.31
5081 5939 5.836898 TGATATGTACTCCCACCGTTTCTAT 59.163 40.000 0.00 0.00 0.00 1.98
5082 5940 5.202765 TGATATGTACTCCCACCGTTTCTA 58.797 41.667 0.00 0.00 0.00 2.10
5083 5941 4.028131 TGATATGTACTCCCACCGTTTCT 58.972 43.478 0.00 0.00 0.00 2.52
5084 5942 4.395959 TGATATGTACTCCCACCGTTTC 57.604 45.455 0.00 0.00 0.00 2.78
5085 5943 4.654262 AGATGATATGTACTCCCACCGTTT 59.346 41.667 0.00 0.00 0.00 3.60
5086 5944 4.223953 AGATGATATGTACTCCCACCGTT 58.776 43.478 0.00 0.00 0.00 4.44
5087 5945 3.845860 AGATGATATGTACTCCCACCGT 58.154 45.455 0.00 0.00 0.00 4.83
5088 5946 5.622460 GCTTAGATGATATGTACTCCCACCG 60.622 48.000 0.00 0.00 0.00 4.94
5089 5947 5.622460 CGCTTAGATGATATGTACTCCCACC 60.622 48.000 0.00 0.00 0.00 4.61
5090 5948 5.403246 CGCTTAGATGATATGTACTCCCAC 58.597 45.833 0.00 0.00 0.00 4.61
5091 5949 4.462834 CCGCTTAGATGATATGTACTCCCA 59.537 45.833 0.00 0.00 0.00 4.37
5092 5950 4.142138 CCCGCTTAGATGATATGTACTCCC 60.142 50.000 0.00 0.00 0.00 4.30
5093 5951 4.142138 CCCCGCTTAGATGATATGTACTCC 60.142 50.000 0.00 0.00 0.00 3.85
5094 5952 4.463186 ACCCCGCTTAGATGATATGTACTC 59.537 45.833 0.00 0.00 0.00 2.59
5095 5953 4.417437 ACCCCGCTTAGATGATATGTACT 58.583 43.478 0.00 0.00 0.00 2.73
5096 5954 4.674623 CGACCCCGCTTAGATGATATGTAC 60.675 50.000 0.00 0.00 0.00 2.90
5097 5955 3.442625 CGACCCCGCTTAGATGATATGTA 59.557 47.826 0.00 0.00 0.00 2.29
5121 5979 1.440938 TTGTGAACACCGGCGAAAGG 61.441 55.000 9.30 0.00 0.00 3.11
5157 6025 2.961741 TCACTGAAGTCTTGCAGAGTCT 59.038 45.455 14.95 0.00 36.07 3.24
5165 6033 4.611943 TCTTCGTTCTCACTGAAGTCTTG 58.388 43.478 0.00 0.00 39.97 3.02
5422 6294 2.219674 GGTGCTCAATTCTATCGCTTCG 59.780 50.000 0.00 0.00 0.00 3.79
5430 6302 2.236146 ACGGACATGGTGCTCAATTCTA 59.764 45.455 0.00 0.00 0.00 2.10
5432 6304 1.131126 CACGGACATGGTGCTCAATTC 59.869 52.381 0.00 0.00 0.00 2.17
5433 6305 1.167851 CACGGACATGGTGCTCAATT 58.832 50.000 0.00 0.00 0.00 2.32
5440 6318 0.463654 CCCCATACACGGACATGGTG 60.464 60.000 0.00 0.00 40.17 4.17
5450 6328 4.406003 ACACTCACTCTTATCCCCATACAC 59.594 45.833 0.00 0.00 0.00 2.90
5451 6329 4.620723 ACACTCACTCTTATCCCCATACA 58.379 43.478 0.00 0.00 0.00 2.29
5462 6340 7.009179 TCCATTTTCTCATACACTCACTCTT 57.991 36.000 0.00 0.00 0.00 2.85
5500 6378 2.166664 GCCTTCAGAGTACACCAGGTAG 59.833 54.545 0.00 0.00 31.13 3.18
5558 6436 4.410400 GCTACGCAAGGTGGCCCT 62.410 66.667 0.00 0.00 46.48 5.19
5564 6442 2.885861 CTCGAGGCTACGCAAGGT 59.114 61.111 3.91 0.00 46.39 3.50
5615 6493 5.756195 TCAAAATCCAGTCAGTGAAGTTG 57.244 39.130 0.00 0.00 0.00 3.16
5655 6533 3.632604 TGGCATTCGGTTAACAAGTTGAA 59.367 39.130 10.54 3.80 0.00 2.69
5665 6543 4.520874 TCTGAACAAAATGGCATTCGGTTA 59.479 37.500 21.84 9.62 0.00 2.85
5749 6627 5.133221 AGCTCACAACTGGTCTGTAAATTT 58.867 37.500 0.00 0.00 0.00 1.82
5795 6673 1.880027 CTGGTCTGCAACTTTGGGTAC 59.120 52.381 0.00 0.00 0.00 3.34
5826 6704 5.163581 CCATTGGGATTCTGCTCTTAAACTG 60.164 44.000 0.00 0.00 35.59 3.16
5844 6722 3.159353 CATGTGCATTGTCTCCATTGG 57.841 47.619 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.