Multiple sequence alignment - TraesCS1D01G419900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G419900 chr1D 100.000 5948 0 0 1 5948 476701288 476707235 0.000000e+00 10984.0
1 TraesCS1D01G419900 chr1D 85.855 509 47 10 4185 4670 32440751 32441257 8.840000e-143 518.0
2 TraesCS1D01G419900 chr1D 87.349 166 21 0 5134 5299 445061606 445061771 2.190000e-44 191.0
3 TraesCS1D01G419900 chr1D 86.585 164 20 1 5138 5299 411162620 411162457 4.740000e-41 180.0
4 TraesCS1D01G419900 chr1B 86.125 2890 163 87 822 3633 663043796 663046525 0.000000e+00 2896.0
5 TraesCS1D01G419900 chr1B 93.978 714 40 1 5237 5947 663079035 663079748 0.000000e+00 1077.0
6 TraesCS1D01G419900 chr1B 89.303 832 61 15 4312 5131 663047210 663048025 0.000000e+00 1018.0
7 TraesCS1D01G419900 chr1B 92.780 651 44 3 3635 4284 663046561 663047209 0.000000e+00 939.0
8 TraesCS1D01G419900 chr1B 88.776 196 10 3 1 187 663043186 663043378 4.640000e-56 230.0
9 TraesCS1D01G419900 chr1B 92.500 120 4 4 501 615 663043375 663043494 3.690000e-37 167.0
10 TraesCS1D01G419900 chr1B 86.905 84 8 2 653 733 663043671 663043754 2.280000e-14 91.6
11 TraesCS1D01G419900 chr1A 89.037 2253 141 52 1 2200 572570732 572572931 0.000000e+00 2695.0
12 TraesCS1D01G419900 chr1A 91.984 1472 99 11 3634 5103 572574359 572575813 0.000000e+00 2047.0
13 TraesCS1D01G419900 chr1A 86.653 1431 97 46 2252 3635 572572937 572574320 0.000000e+00 1498.0
14 TraesCS1D01G419900 chr1A 93.673 648 26 1 5301 5948 572575861 572576493 0.000000e+00 955.0
15 TraesCS1D01G419900 chr1A 86.747 166 22 0 5134 5299 540323902 540324067 1.020000e-42 185.0
16 TraesCS1D01G419900 chr2B 86.444 509 44 10 4185 4670 133645535 133646041 8.770000e-148 534.0
17 TraesCS1D01G419900 chr2B 85.069 509 51 10 4185 4670 129743391 129743897 4.140000e-136 496.0
18 TraesCS1D01G419900 chr2B 87.075 294 26 7 5432 5719 39408402 39408689 7.440000e-84 322.0
19 TraesCS1D01G419900 chr2B 86.471 170 22 1 5138 5306 743358265 743358096 1.020000e-42 185.0
20 TraesCS1D01G419900 chr2B 85.714 119 16 1 1247 1364 573128465 573128347 2.250000e-24 124.0
21 TraesCS1D01G419900 chr5B 86.051 509 46 10 4185 4670 641906292 641905786 1.900000e-144 523.0
22 TraesCS1D01G419900 chr5B 86.128 483 54 7 5468 5947 38782483 38782011 5.320000e-140 508.0
23 TraesCS1D01G419900 chr3B 85.855 509 47 10 4185 4670 739401689 739402195 8.840000e-143 518.0
24 TraesCS1D01G419900 chr3B 77.399 646 103 32 3151 3773 422917398 422916773 1.590000e-90 344.0
25 TraesCS1D01G419900 chr3B 86.555 119 15 1 1247 1364 32567936 32568054 4.840000e-26 130.0
26 TraesCS1D01G419900 chr7B 85.968 506 43 8 978 1459 236328568 236328067 3.180000e-142 516.0
27 TraesCS1D01G419900 chr7B 88.235 119 13 1 1247 1364 713752062 713751944 2.230000e-29 141.0
28 TraesCS1D01G419900 chr6A 85.135 518 50 16 4178 4670 428362467 428361952 6.880000e-139 505.0
29 TraesCS1D01G419900 chr6A 87.395 119 14 1 1247 1364 435591784 435591666 1.040000e-27 135.0
30 TraesCS1D01G419900 chr2A 84.942 518 51 16 4178 4670 732555312 732554797 3.200000e-137 499.0
31 TraesCS1D01G419900 chr3A 85.965 456 53 4 5494 5947 54470480 54470034 1.500000e-130 477.0
32 TraesCS1D01G419900 chr3A 81.818 440 55 20 3157 3585 439915394 439915819 4.410000e-91 346.0
33 TraesCS1D01G419900 chr3A 100.000 32 0 0 5433 5464 54470520 54470489 6.440000e-05 60.2
34 TraesCS1D01G419900 chr3D 77.129 634 116 24 3157 3773 325406814 325406193 2.050000e-89 340.0
35 TraesCS1D01G419900 chr3D 86.905 168 21 1 5133 5300 19010630 19010464 2.830000e-43 187.0
36 TraesCS1D01G419900 chr3D 87.075 147 14 3 1085 1228 570492245 570492101 1.720000e-35 161.0
37 TraesCS1D01G419900 chr4B 81.287 342 40 9 4351 4670 565627563 565627224 7.650000e-64 255.0
38 TraesCS1D01G419900 chr7D 88.820 161 18 0 5138 5298 591456895 591456735 1.310000e-46 198.0
39 TraesCS1D01G419900 chr7D 91.228 114 10 0 1247 1360 474193474 474193361 7.980000e-34 156.0
40 TraesCS1D01G419900 chr7D 89.565 115 11 1 230 343 8029858 8029744 1.730000e-30 145.0
41 TraesCS1D01G419900 chr7D 81.437 167 21 8 185 347 42221019 42220859 1.740000e-25 128.0
42 TraesCS1D01G419900 chr4D 88.272 162 19 0 5138 5299 386984668 386984829 1.690000e-45 195.0
43 TraesCS1D01G419900 chr4D 88.889 117 12 1 1248 1364 465184588 465184703 6.210000e-30 143.0
44 TraesCS1D01G419900 chr2D 87.805 164 17 2 5138 5299 340511473 340511635 7.870000e-44 189.0
45 TraesCS1D01G419900 chr2D 86.667 165 19 3 5138 5300 5881656 5881819 4.740000e-41 180.0
46 TraesCS1D01G419900 chr2D 88.983 118 11 1 232 347 393585571 393585454 1.730000e-30 145.0
47 TraesCS1D01G419900 chrUn 85.034 147 16 4 199 343 91651368 91651226 1.730000e-30 145.0
48 TraesCS1D01G419900 chrUn 85.034 147 16 4 199 343 239780338 239780480 1.730000e-30 145.0
49 TraesCS1D01G419900 chrUn 85.034 147 16 4 199 343 274320156 274320014 1.730000e-30 145.0
50 TraesCS1D01G419900 chr6D 86.029 136 16 2 215 347 17243065 17242930 6.210000e-30 143.0
51 TraesCS1D01G419900 chr6B 83.108 148 19 4 199 344 81010526 81010669 4.840000e-26 130.0
52 TraesCS1D01G419900 chr5A 90.625 96 5 3 974 1069 586022597 586022688 2.250000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G419900 chr1D 476701288 476707235 5947 False 10984.000000 10984 100.000000 1 5948 1 chr1D.!!$F3 5947
1 TraesCS1D01G419900 chr1D 32440751 32441257 506 False 518.000000 518 85.855000 4185 4670 1 chr1D.!!$F1 485
2 TraesCS1D01G419900 chr1B 663079035 663079748 713 False 1077.000000 1077 93.978000 5237 5947 1 chr1B.!!$F1 710
3 TraesCS1D01G419900 chr1B 663043186 663048025 4839 False 890.266667 2896 89.398167 1 5131 6 chr1B.!!$F2 5130
4 TraesCS1D01G419900 chr1A 572570732 572576493 5761 False 1798.750000 2695 90.336750 1 5948 4 chr1A.!!$F2 5947
5 TraesCS1D01G419900 chr2B 133645535 133646041 506 False 534.000000 534 86.444000 4185 4670 1 chr2B.!!$F3 485
6 TraesCS1D01G419900 chr2B 129743391 129743897 506 False 496.000000 496 85.069000 4185 4670 1 chr2B.!!$F2 485
7 TraesCS1D01G419900 chr5B 641905786 641906292 506 True 523.000000 523 86.051000 4185 4670 1 chr5B.!!$R2 485
8 TraesCS1D01G419900 chr3B 739401689 739402195 506 False 518.000000 518 85.855000 4185 4670 1 chr3B.!!$F2 485
9 TraesCS1D01G419900 chr3B 422916773 422917398 625 True 344.000000 344 77.399000 3151 3773 1 chr3B.!!$R1 622
10 TraesCS1D01G419900 chr7B 236328067 236328568 501 True 516.000000 516 85.968000 978 1459 1 chr7B.!!$R1 481
11 TraesCS1D01G419900 chr6A 428361952 428362467 515 True 505.000000 505 85.135000 4178 4670 1 chr6A.!!$R1 492
12 TraesCS1D01G419900 chr2A 732554797 732555312 515 True 499.000000 499 84.942000 4178 4670 1 chr2A.!!$R1 492
13 TraesCS1D01G419900 chr3D 325406193 325406814 621 True 340.000000 340 77.129000 3157 3773 1 chr3D.!!$R2 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
897 1071 0.178068 AACCAGAAGCACACACGACT 59.822 50.0 0.00 0.0 0.00 4.18 F
2223 2450 0.179004 ATCCACCCAAAACAGTCGCA 60.179 50.0 0.00 0.0 0.00 5.10 F
2231 2458 0.031994 AAAACAGTCGCACATTGCCC 59.968 50.0 0.00 0.0 41.12 5.36 F
2630 2889 0.034089 CATGGAGAAACCCACCCCTC 60.034 60.0 0.00 0.0 39.34 4.30 F
2631 2890 0.178831 ATGGAGAAACCCACCCCTCT 60.179 55.0 0.00 0.0 39.34 3.69 F
2902 3175 0.386476 TATTACCGGTAGCGGCAGTG 59.614 55.0 32.09 9.6 0.00 3.66 F
3070 3352 0.390124 CAAACCATGTGCCACTGCTT 59.610 50.0 0.00 0.0 38.71 3.91 F
3209 3507 0.687757 AGAGGCAGGGCGACTTCATA 60.688 55.0 0.00 0.0 0.00 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2228 2455 0.036388 TGTGATTGAGAACGAGGGGC 60.036 55.000 0.00 0.00 0.0 5.80 R
3978 4333 0.238289 GAACACCGACACAAGCCATG 59.762 55.000 0.00 0.00 0.0 3.66 R
4026 4381 0.392998 ATTTGCCACTAGTCCCTGCG 60.393 55.000 0.00 0.00 0.0 5.18 R
4409 4767 1.105759 GCAGACCAGGATCATTGCCC 61.106 60.000 0.00 0.00 0.0 5.36 R
4580 4959 3.277142 TGATCTGCAGCATCAAGACAT 57.723 42.857 19.88 3.04 0.0 3.06 R
4784 5163 1.003580 AGAATTGAGCACCATGTCCGT 59.996 47.619 0.00 0.00 0.0 4.69 R
4785 5164 1.742761 AGAATTGAGCACCATGTCCG 58.257 50.000 0.00 0.00 0.0 4.79 R
5182 5580 0.032912 TCTGCCCCGTATGTAGTCCA 60.033 55.000 0.00 0.00 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 8.457261 AGAAGATTCAAGAGTTTAATGTGATGC 58.543 33.333 0.00 0.00 0.00 3.91
80 84 0.726787 CGAAGCACACGCACGTAGTA 60.727 55.000 0.00 0.00 41.61 1.82
95 99 6.688385 CGCACGTAGTAGCAGTAGTAAATAAA 59.312 38.462 0.00 0.00 41.61 1.40
97 101 8.529911 GCACGTAGTAGCAGTAGTAAATAAAAG 58.470 37.037 0.00 0.00 41.61 2.27
98 102 8.529911 CACGTAGTAGCAGTAGTAAATAAAAGC 58.470 37.037 0.00 0.00 41.61 3.51
99 103 8.246180 ACGTAGTAGCAGTAGTAAATAAAAGCA 58.754 33.333 0.00 0.00 41.94 3.91
100 104 8.744011 CGTAGTAGCAGTAGTAAATAAAAGCAG 58.256 37.037 0.00 0.00 0.00 4.24
101 105 9.032420 GTAGTAGCAGTAGTAAATAAAAGCAGG 57.968 37.037 0.00 0.00 0.00 4.85
152 164 1.471287 TCATCAATGAAGCAGCAGCAC 59.529 47.619 3.17 0.00 45.49 4.40
185 204 4.232188 ACGGACATCCTCAAGACTACTA 57.768 45.455 0.00 0.00 0.00 1.82
208 227 8.379331 ACTACTCTCTCATTTTCTTTTTAGCCT 58.621 33.333 0.00 0.00 0.00 4.58
213 232 6.996509 TCTCATTTTCTTTTTAGCCTGCATT 58.003 32.000 0.00 0.00 0.00 3.56
221 240 9.988815 TTTCTTTTTAGCCTGCATTTATACAAA 57.011 25.926 0.00 0.00 0.00 2.83
368 389 4.369182 ACTATTATTGTAGAGCACCACGC 58.631 43.478 0.00 0.00 42.91 5.34
391 412 0.676782 CGGGTCCTGGTCAAATCCAC 60.677 60.000 0.00 0.00 33.55 4.02
398 419 4.524328 GTCCTGGTCAAATCCACTTCAAAT 59.476 41.667 0.00 0.00 33.55 2.32
418 439 5.346181 AATCCGAGACCTTTTCTTCTAGG 57.654 43.478 0.00 0.00 36.30 3.02
421 442 3.258622 CCGAGACCTTTTCTTCTAGGTGT 59.741 47.826 0.00 0.00 44.65 4.16
440 461 4.142859 GGTGTAGTAGAGTTGAGTCACTCG 60.143 50.000 0.00 0.00 46.85 4.18
499 520 3.267483 TCGGCAGTAAAGCAGATAAACC 58.733 45.455 0.00 0.00 33.83 3.27
513 534 5.392057 GCAGATAAACCCTACACTTTTCTGC 60.392 44.000 9.58 9.58 44.41 4.26
615 641 4.452455 AGCGAAAAAGGTCAAGATGTGTAG 59.548 41.667 0.00 0.00 0.00 2.74
616 642 4.712763 CGAAAAAGGTCAAGATGTGTAGC 58.287 43.478 0.00 0.00 0.00 3.58
625 762 8.885693 AGGTCAAGATGTGTAGCATAGATATA 57.114 34.615 0.00 0.00 38.06 0.86
626 763 8.965819 AGGTCAAGATGTGTAGCATAGATATAG 58.034 37.037 0.00 0.00 38.06 1.31
691 858 0.401738 CACATTCCACCACCTCACCT 59.598 55.000 0.00 0.00 0.00 4.00
701 868 2.037367 CCTCACCTCACTCCCCGA 59.963 66.667 0.00 0.00 0.00 5.14
704 871 2.603473 CACCTCACTCCCCGACCA 60.603 66.667 0.00 0.00 0.00 4.02
705 872 2.283966 ACCTCACTCCCCGACCAG 60.284 66.667 0.00 0.00 0.00 4.00
706 873 3.775654 CCTCACTCCCCGACCAGC 61.776 72.222 0.00 0.00 0.00 4.85
707 874 2.681778 CTCACTCCCCGACCAGCT 60.682 66.667 0.00 0.00 0.00 4.24
760 930 4.087892 CGCCACCTCACTCCCCAG 62.088 72.222 0.00 0.00 0.00 4.45
782 952 2.358737 CAGACCAACCGAGCCACC 60.359 66.667 0.00 0.00 0.00 4.61
783 953 2.847234 AGACCAACCGAGCCACCA 60.847 61.111 0.00 0.00 0.00 4.17
784 954 2.668550 GACCAACCGAGCCACCAC 60.669 66.667 0.00 0.00 0.00 4.16
851 1021 3.827898 CTCGAGCTCGACACCCCC 61.828 72.222 33.84 0.00 44.22 5.40
852 1022 4.671590 TCGAGCTCGACACCCCCA 62.672 66.667 33.84 10.40 44.22 4.96
853 1023 4.436998 CGAGCTCGACACCCCCAC 62.437 72.222 32.06 0.00 43.02 4.61
854 1024 3.311110 GAGCTCGACACCCCCACA 61.311 66.667 0.00 0.00 0.00 4.17
895 1069 0.813610 CCAACCAGAAGCACACACGA 60.814 55.000 0.00 0.00 0.00 4.35
897 1071 0.178068 AACCAGAAGCACACACGACT 59.822 50.000 0.00 0.00 0.00 4.18
927 1101 2.338785 GGAGTGAAGCCAGCAAGCC 61.339 63.158 0.00 0.00 0.00 4.35
1069 1254 2.190578 CGCCCAAGACATCCTCCC 59.809 66.667 0.00 0.00 0.00 4.30
1070 1255 2.190578 GCCCAAGACATCCTCCCG 59.809 66.667 0.00 0.00 0.00 5.14
1073 1258 1.299648 CCAAGACATCCTCCCGCAA 59.700 57.895 0.00 0.00 0.00 4.85
1074 1259 0.745845 CCAAGACATCCTCCCGCAAG 60.746 60.000 0.00 0.00 0.00 4.01
1485 1703 4.821589 CTCCAGGCCGAGAACGCC 62.822 72.222 1.57 0.00 38.29 5.68
1677 1901 3.050275 GCGAGCAAGCCCGTTCTT 61.050 61.111 0.00 0.00 0.00 2.52
1678 1902 3.028366 GCGAGCAAGCCCGTTCTTC 62.028 63.158 0.00 0.00 0.00 2.87
1679 1903 2.391389 CGAGCAAGCCCGTTCTTCC 61.391 63.158 0.00 0.00 0.00 3.46
1680 1904 1.003233 GAGCAAGCCCGTTCTTCCT 60.003 57.895 0.00 0.00 0.00 3.36
1752 1976 0.331954 AGTCCTACTTCTCCGGCTCA 59.668 55.000 0.00 0.00 0.00 4.26
1782 2006 3.691342 CCGGCCAACTCGTCCTCA 61.691 66.667 2.24 0.00 0.00 3.86
1791 2015 2.044352 TCGTCCTCATCCGGCTCA 60.044 61.111 0.00 0.00 0.00 4.26
1794 2018 1.006805 GTCCTCATCCGGCTCATCG 60.007 63.158 0.00 0.00 0.00 3.84
2193 2420 1.515954 CCACCTCATCGCGGTAAGT 59.484 57.895 6.13 0.00 32.37 2.24
2217 2444 1.141858 GCCCAAAATCCACCCAAAACA 59.858 47.619 0.00 0.00 0.00 2.83
2218 2445 2.810032 GCCCAAAATCCACCCAAAACAG 60.810 50.000 0.00 0.00 0.00 3.16
2219 2446 2.437651 CCCAAAATCCACCCAAAACAGT 59.562 45.455 0.00 0.00 0.00 3.55
2220 2447 3.494223 CCCAAAATCCACCCAAAACAGTC 60.494 47.826 0.00 0.00 0.00 3.51
2221 2448 3.380142 CAAAATCCACCCAAAACAGTCG 58.620 45.455 0.00 0.00 0.00 4.18
2223 2450 0.179004 ATCCACCCAAAACAGTCGCA 60.179 50.000 0.00 0.00 0.00 5.10
2224 2451 1.098712 TCCACCCAAAACAGTCGCAC 61.099 55.000 0.00 0.00 0.00 5.34
2225 2452 1.380403 CCACCCAAAACAGTCGCACA 61.380 55.000 0.00 0.00 0.00 4.57
2226 2453 0.667993 CACCCAAAACAGTCGCACAT 59.332 50.000 0.00 0.00 0.00 3.21
2228 2455 1.066908 ACCCAAAACAGTCGCACATTG 59.933 47.619 0.00 0.00 0.00 2.82
2229 2456 1.130955 CCAAAACAGTCGCACATTGC 58.869 50.000 0.00 0.00 40.69 3.56
2231 2458 0.031994 AAAACAGTCGCACATTGCCC 59.968 50.000 0.00 0.00 41.12 5.36
2232 2459 1.805428 AAACAGTCGCACATTGCCCC 61.805 55.000 0.00 0.00 41.12 5.80
2233 2460 2.360350 CAGTCGCACATTGCCCCT 60.360 61.111 0.00 0.00 41.12 4.79
2235 2462 3.499737 GTCGCACATTGCCCCTCG 61.500 66.667 0.00 0.00 41.12 4.63
2236 2463 4.015406 TCGCACATTGCCCCTCGT 62.015 61.111 0.00 0.00 41.12 4.18
2237 2464 3.055719 CGCACATTGCCCCTCGTT 61.056 61.111 0.00 0.00 41.12 3.85
2238 2465 2.877691 GCACATTGCCCCTCGTTC 59.122 61.111 0.00 0.00 37.42 3.95
2239 2466 1.675641 GCACATTGCCCCTCGTTCT 60.676 57.895 0.00 0.00 37.42 3.01
2240 2467 1.648467 GCACATTGCCCCTCGTTCTC 61.648 60.000 0.00 0.00 37.42 2.87
2241 2468 0.321564 CACATTGCCCCTCGTTCTCA 60.322 55.000 0.00 0.00 0.00 3.27
2242 2469 0.400213 ACATTGCCCCTCGTTCTCAA 59.600 50.000 0.00 0.00 0.00 3.02
2243 2470 1.004745 ACATTGCCCCTCGTTCTCAAT 59.995 47.619 0.00 0.00 0.00 2.57
2244 2471 1.672881 CATTGCCCCTCGTTCTCAATC 59.327 52.381 0.00 0.00 0.00 2.67
2245 2472 0.690192 TTGCCCCTCGTTCTCAATCA 59.310 50.000 0.00 0.00 0.00 2.57
2246 2473 0.036388 TGCCCCTCGTTCTCAATCAC 60.036 55.000 0.00 0.00 0.00 3.06
2247 2474 0.036388 GCCCCTCGTTCTCAATCACA 60.036 55.000 0.00 0.00 0.00 3.58
2248 2475 1.407437 GCCCCTCGTTCTCAATCACAT 60.407 52.381 0.00 0.00 0.00 3.21
2249 2476 2.158957 GCCCCTCGTTCTCAATCACATA 60.159 50.000 0.00 0.00 0.00 2.29
2250 2477 3.458189 CCCCTCGTTCTCAATCACATAC 58.542 50.000 0.00 0.00 0.00 2.39
2256 2483 6.331170 TCGTTCTCAATCACATACATTTCG 57.669 37.500 0.00 0.00 0.00 3.46
2257 2484 5.867174 TCGTTCTCAATCACATACATTTCGT 59.133 36.000 0.00 0.00 0.00 3.85
2260 2487 7.411912 CGTTCTCAATCACATACATTTCGTTCT 60.412 37.037 0.00 0.00 0.00 3.01
2267 2494 7.041187 TCACATACATTTCGTTCTCGTTTAC 57.959 36.000 0.00 0.00 38.33 2.01
2276 2503 8.953990 CATTTCGTTCTCGTTTACTTTCATTTT 58.046 29.630 0.00 0.00 38.33 1.82
2277 2504 8.537729 TTTCGTTCTCGTTTACTTTCATTTTC 57.462 30.769 0.00 0.00 38.33 2.29
2279 2506 7.912383 TCGTTCTCGTTTACTTTCATTTTCTT 58.088 30.769 0.00 0.00 38.33 2.52
2281 2508 7.320560 CGTTCTCGTTTACTTTCATTTTCTTCC 59.679 37.037 0.00 0.00 0.00 3.46
2282 2509 6.884187 TCTCGTTTACTTTCATTTTCTTCCG 58.116 36.000 0.00 0.00 0.00 4.30
2283 2510 6.702723 TCTCGTTTACTTTCATTTTCTTCCGA 59.297 34.615 0.00 0.00 0.00 4.55
2324 2557 5.236263 ACAAAATCTGAAACCGAAAAATGGC 59.764 36.000 0.00 0.00 0.00 4.40
2358 2591 2.820037 GCGGAGTAGCTGCCAACC 60.820 66.667 0.00 0.00 43.33 3.77
2390 2638 2.364002 TGGATCAAATCAGTCGCCGATA 59.636 45.455 0.00 0.00 0.00 2.92
2455 2713 5.238650 CACCAGAAAGTTATCGTCTTTTGGT 59.761 40.000 13.67 13.67 41.24 3.67
2497 2755 2.407210 CACACGGCACACACCAAC 59.593 61.111 0.00 0.00 0.00 3.77
2498 2756 2.045829 ACACGGCACACACCAACA 60.046 55.556 0.00 0.00 0.00 3.33
2515 2773 6.830324 ACACCAACATACAGATGCAGATAAAT 59.170 34.615 0.00 0.00 36.43 1.40
2537 2795 5.996669 TGCAGCTGAATAACATACAGATG 57.003 39.130 20.43 0.00 46.34 2.90
2564 2822 5.363939 ACAGAGGTGAAAAGAGAGAAACAG 58.636 41.667 0.00 0.00 0.00 3.16
2565 2823 4.213059 CAGAGGTGAAAAGAGAGAAACAGC 59.787 45.833 0.00 0.00 0.00 4.40
2574 2832 1.197949 GAGAGAAACAGCGGCCTTTTC 59.802 52.381 13.38 13.38 0.00 2.29
2620 2879 0.395586 CCCCGCATTCCATGGAGAAA 60.396 55.000 15.53 0.00 0.00 2.52
2627 2886 0.407918 TTCCATGGAGAAACCCACCC 59.592 55.000 15.53 0.00 39.34 4.61
2629 2888 1.509548 CCATGGAGAAACCCACCCCT 61.510 60.000 5.56 0.00 39.34 4.79
2630 2889 0.034089 CATGGAGAAACCCACCCCTC 60.034 60.000 0.00 0.00 39.34 4.30
2631 2890 0.178831 ATGGAGAAACCCACCCCTCT 60.179 55.000 0.00 0.00 39.34 3.69
2632 2891 0.840722 TGGAGAAACCCACCCCTCTC 60.841 60.000 0.00 0.00 38.00 3.20
2633 2892 0.840722 GGAGAAACCCACCCCTCTCA 60.841 60.000 0.00 0.00 36.78 3.27
2634 2893 1.290134 GAGAAACCCACCCCTCTCAT 58.710 55.000 0.00 0.00 35.43 2.90
2685 2947 4.503123 GGATTTTTGTGGGTTTTGGAGGAG 60.503 45.833 0.00 0.00 0.00 3.69
2785 3052 0.987613 TGCTGTGGATCCAGGGCATA 60.988 55.000 27.68 13.52 32.59 3.14
2851 3118 3.695606 GGAGGAGCACGCTGACCA 61.696 66.667 0.00 0.00 0.00 4.02
2862 3129 1.064758 ACGCTGACCAGAGAGAGAGAT 60.065 52.381 7.73 0.00 32.37 2.75
2897 3170 5.738118 TCAAAAATTATTACCGGTAGCGG 57.262 39.130 30.71 30.71 0.00 5.52
2900 3173 2.450609 ATTATTACCGGTAGCGGCAG 57.549 50.000 32.09 10.38 0.00 4.85
2901 3174 1.113788 TTATTACCGGTAGCGGCAGT 58.886 50.000 32.09 19.43 0.00 4.40
2902 3175 0.386476 TATTACCGGTAGCGGCAGTG 59.614 55.000 32.09 9.60 0.00 3.66
2995 3268 1.312815 GTGGTGCTGAAGCTTTGACT 58.687 50.000 0.00 0.00 42.66 3.41
3070 3352 0.390124 CAAACCATGTGCCACTGCTT 59.610 50.000 0.00 0.00 38.71 3.91
3095 3377 5.100259 CCTAAAAGCTGTTGATCATGCTTG 58.900 41.667 22.84 14.61 39.00 4.01
3096 3378 3.587797 AAAGCTGTTGATCATGCTTGG 57.412 42.857 22.84 4.00 39.00 3.61
3099 3381 2.230508 AGCTGTTGATCATGCTTGGTTG 59.769 45.455 11.13 0.00 30.56 3.77
3101 3383 2.559668 CTGTTGATCATGCTTGGTTGGT 59.440 45.455 0.00 0.00 0.00 3.67
3102 3384 2.964464 TGTTGATCATGCTTGGTTGGTT 59.036 40.909 0.00 0.00 0.00 3.67
3103 3385 3.243805 TGTTGATCATGCTTGGTTGGTTG 60.244 43.478 0.00 0.00 0.00 3.77
3105 3387 1.895131 GATCATGCTTGGTTGGTTGGT 59.105 47.619 0.00 0.00 0.00 3.67
3109 3405 1.561643 TGCTTGGTTGGTTGGTTTGA 58.438 45.000 0.00 0.00 0.00 2.69
3112 3408 3.054802 TGCTTGGTTGGTTGGTTTGATTT 60.055 39.130 0.00 0.00 0.00 2.17
3123 3419 4.822685 TGGTTTGATTTGATTGATGGGG 57.177 40.909 0.00 0.00 0.00 4.96
3125 3421 3.774216 GGTTTGATTTGATTGATGGGGGA 59.226 43.478 0.00 0.00 0.00 4.81
3129 3425 5.617528 TGATTTGATTGATGGGGGAAATG 57.382 39.130 0.00 0.00 0.00 2.32
3130 3426 4.409574 TGATTTGATTGATGGGGGAAATGG 59.590 41.667 0.00 0.00 0.00 3.16
3133 3429 3.106054 TGATTGATGGGGGAAATGGTTG 58.894 45.455 0.00 0.00 0.00 3.77
3149 3445 2.039216 TGGTTGATTAAGCCTGACGGAA 59.961 45.455 0.00 0.00 33.42 4.30
3209 3507 0.687757 AGAGGCAGGGCGACTTCATA 60.688 55.000 0.00 0.00 0.00 2.15
3331 3629 1.078848 CTAACCAAGCTCGCTGGCT 60.079 57.895 2.67 0.00 45.30 4.75
3366 3668 5.763204 TCCCAAGTTCAGTGATTCTTGTAAC 59.237 40.000 24.14 8.02 36.53 2.50
3370 3672 4.062991 GTTCAGTGATTCTTGTAACGGGT 58.937 43.478 0.00 0.00 0.00 5.28
3372 3674 4.710324 TCAGTGATTCTTGTAACGGGTTT 58.290 39.130 0.00 0.00 0.00 3.27
3530 3832 2.506217 GCGTTCTGCGACGATCCA 60.506 61.111 10.67 0.00 45.47 3.41
3774 4129 3.921677 TGGAATCGTCAGTCAGGTAAAC 58.078 45.455 0.00 0.00 0.00 2.01
3781 4136 3.982058 CGTCAGTCAGGTAAACTCAGTTC 59.018 47.826 0.00 0.00 0.00 3.01
3799 4154 5.124617 TCAGTTCTCTAGTAGCACATGACAG 59.875 44.000 0.00 0.00 0.00 3.51
3803 4158 5.196695 TCTCTAGTAGCACATGACAGACAT 58.803 41.667 0.00 0.00 40.17 3.06
3807 4162 5.003692 AGTAGCACATGACAGACATACAG 57.996 43.478 0.00 0.00 37.46 2.74
3822 4177 8.045507 ACAGACATACAGACAGATCAATCATTT 58.954 33.333 0.00 0.00 0.00 2.32
3895 4250 6.518537 GCACTAGGTAGGAAGGTACCAATATG 60.519 46.154 15.94 0.00 44.53 1.78
4048 4403 2.683362 GCAGGGACTAGTGGCAAATAAC 59.317 50.000 0.00 0.00 36.02 1.89
4088 4443 3.921021 AGACTAAGACGCAAATCTGAACG 59.079 43.478 0.00 0.00 0.00 3.95
4089 4444 3.909430 ACTAAGACGCAAATCTGAACGA 58.091 40.909 0.00 0.00 0.00 3.85
4124 4479 6.249035 TGGTGCTAGATTTTTCTTTTACCG 57.751 37.500 0.00 0.00 0.00 4.02
4140 4495 5.837586 TTTACCGTATTTACAACCGTCAC 57.162 39.130 0.00 0.00 0.00 3.67
4285 4642 2.161609 GCTATGTGCAAGTGTACCCAAC 59.838 50.000 0.00 0.00 42.31 3.77
4301 4658 3.253188 ACCCAACATCTGTTCATTTGTCG 59.747 43.478 0.00 0.00 35.83 4.35
4409 4767 5.163581 CCATTGGGATTCTGCTCTTAAACTG 60.164 44.000 0.00 0.00 35.59 3.16
4486 4846 5.133221 AGCTCACAACTGGTCTGTAAATTT 58.867 37.500 0.00 0.00 0.00 1.82
4570 4949 4.520874 TCTGAACAAAATGGCATTCGGTTA 59.479 37.500 21.84 9.62 0.00 2.85
4580 4959 3.632604 TGGCATTCGGTTAACAAGTTGAA 59.367 39.130 10.54 3.80 0.00 2.69
4620 4999 5.756195 TCAAAATCCAGTCAGTGAAGTTG 57.244 39.130 0.00 0.00 0.00 3.16
4671 5050 2.885861 CTCGAGGCTACGCAAGGT 59.114 61.111 3.91 0.00 46.39 3.50
4677 5056 4.410400 GCTACGCAAGGTGGCCCT 62.410 66.667 0.00 0.00 46.48 5.19
4735 5114 2.166664 GCCTTCAGAGTACACCAGGTAG 59.833 54.545 0.00 0.00 31.13 3.18
4773 5152 7.009179 TCCATTTTCTCATACACTCACTCTT 57.991 36.000 0.00 0.00 0.00 2.85
4784 5163 4.620723 ACACTCACTCTTATCCCCATACA 58.379 43.478 0.00 0.00 0.00 2.29
4785 5164 4.406003 ACACTCACTCTTATCCCCATACAC 59.594 45.833 0.00 0.00 0.00 2.90
4795 5174 0.463654 CCCCATACACGGACATGGTG 60.464 60.000 0.00 0.00 40.17 4.17
4802 5187 1.167851 CACGGACATGGTGCTCAATT 58.832 50.000 0.00 0.00 0.00 2.32
4803 5188 1.131126 CACGGACATGGTGCTCAATTC 59.869 52.381 0.00 0.00 0.00 2.17
4805 5190 2.236146 ACGGACATGGTGCTCAATTCTA 59.764 45.455 0.00 0.00 0.00 2.10
4813 5198 2.219674 GGTGCTCAATTCTATCGCTTCG 59.780 50.000 0.00 0.00 0.00 3.79
5026 5412 5.025826 CCTGTAACGAAAACACTTTCACAC 58.974 41.667 0.00 0.00 40.96 3.82
5070 5458 4.611943 TCTTCGTTCTCACTGAAGTCTTG 58.388 43.478 0.00 0.00 39.97 3.02
5078 5466 2.961741 TCACTGAAGTCTTGCAGAGTCT 59.038 45.455 14.95 0.00 36.07 3.24
5114 5512 1.440938 TTGTGAACACCGGCGAAAGG 61.441 55.000 9.30 0.00 0.00 3.11
5138 5536 3.442625 CGACCCCGCTTAGATGATATGTA 59.557 47.826 0.00 0.00 0.00 2.29
5139 5537 4.674623 CGACCCCGCTTAGATGATATGTAC 60.675 50.000 0.00 0.00 0.00 2.90
5140 5538 4.417437 ACCCCGCTTAGATGATATGTACT 58.583 43.478 0.00 0.00 0.00 2.73
5141 5539 4.463186 ACCCCGCTTAGATGATATGTACTC 59.537 45.833 0.00 0.00 0.00 2.59
5142 5540 4.142138 CCCCGCTTAGATGATATGTACTCC 60.142 50.000 0.00 0.00 0.00 3.85
5143 5541 4.142138 CCCGCTTAGATGATATGTACTCCC 60.142 50.000 0.00 0.00 0.00 4.30
5144 5542 4.462834 CCGCTTAGATGATATGTACTCCCA 59.537 45.833 0.00 0.00 0.00 4.37
5145 5543 5.403246 CGCTTAGATGATATGTACTCCCAC 58.597 45.833 0.00 0.00 0.00 4.61
5146 5544 5.622460 CGCTTAGATGATATGTACTCCCACC 60.622 48.000 0.00 0.00 0.00 4.61
5147 5545 5.622460 GCTTAGATGATATGTACTCCCACCG 60.622 48.000 0.00 0.00 0.00 4.94
5148 5546 3.845860 AGATGATATGTACTCCCACCGT 58.154 45.455 0.00 0.00 0.00 4.83
5149 5547 4.223953 AGATGATATGTACTCCCACCGTT 58.776 43.478 0.00 0.00 0.00 4.44
5150 5548 4.654262 AGATGATATGTACTCCCACCGTTT 59.346 41.667 0.00 0.00 0.00 3.60
5151 5549 4.395959 TGATATGTACTCCCACCGTTTC 57.604 45.455 0.00 0.00 0.00 2.78
5152 5550 4.028131 TGATATGTACTCCCACCGTTTCT 58.972 43.478 0.00 0.00 0.00 2.52
5153 5551 5.202765 TGATATGTACTCCCACCGTTTCTA 58.797 41.667 0.00 0.00 0.00 2.10
5154 5552 5.836898 TGATATGTACTCCCACCGTTTCTAT 59.163 40.000 0.00 0.00 0.00 1.98
5155 5553 7.005902 TGATATGTACTCCCACCGTTTCTATA 58.994 38.462 0.00 0.00 0.00 1.31
5156 5554 7.672660 TGATATGTACTCCCACCGTTTCTATAT 59.327 37.037 0.00 0.00 0.00 0.86
5157 5555 9.182214 GATATGTACTCCCACCGTTTCTATATA 57.818 37.037 0.00 0.00 0.00 0.86
5158 5556 9.710818 ATATGTACTCCCACCGTTTCTATATAT 57.289 33.333 0.00 0.00 0.00 0.86
5160 5558 8.938801 TGTACTCCCACCGTTTCTATATATAA 57.061 34.615 0.00 0.00 0.00 0.98
5161 5559 9.017509 TGTACTCCCACCGTTTCTATATATAAG 57.982 37.037 0.00 0.00 0.00 1.73
5162 5560 9.018582 GTACTCCCACCGTTTCTATATATAAGT 57.981 37.037 0.00 0.00 0.00 2.24
5163 5561 8.120140 ACTCCCACCGTTTCTATATATAAGTC 57.880 38.462 0.00 0.00 0.00 3.01
5164 5562 7.949006 ACTCCCACCGTTTCTATATATAAGTCT 59.051 37.037 0.00 0.00 0.00 3.24
5165 5563 8.716674 TCCCACCGTTTCTATATATAAGTCTT 57.283 34.615 0.00 0.00 0.00 3.01
5166 5564 9.151177 TCCCACCGTTTCTATATATAAGTCTTT 57.849 33.333 0.00 0.00 0.00 2.52
5167 5565 9.774413 CCCACCGTTTCTATATATAAGTCTTTT 57.226 33.333 0.00 0.00 0.00 2.27
5196 5594 8.294954 AGATTCTAATATGGACTACATACGGG 57.705 38.462 0.00 0.00 44.41 5.28
5197 5595 6.845758 TTCTAATATGGACTACATACGGGG 57.154 41.667 0.00 0.00 44.41 5.73
5198 5596 3.975168 AATATGGACTACATACGGGGC 57.025 47.619 0.00 0.00 44.41 5.80
5199 5597 2.385135 TATGGACTACATACGGGGCA 57.615 50.000 0.00 0.00 41.03 5.36
5200 5598 1.048601 ATGGACTACATACGGGGCAG 58.951 55.000 0.00 0.00 38.26 4.85
5201 5599 0.032912 TGGACTACATACGGGGCAGA 60.033 55.000 0.00 0.00 0.00 4.26
5202 5600 1.117150 GGACTACATACGGGGCAGAA 58.883 55.000 0.00 0.00 0.00 3.02
5203 5601 1.692519 GGACTACATACGGGGCAGAAT 59.307 52.381 0.00 0.00 0.00 2.40
5204 5602 2.548067 GGACTACATACGGGGCAGAATG 60.548 54.545 0.00 0.00 40.87 2.67
5205 5603 2.364324 GACTACATACGGGGCAGAATGA 59.636 50.000 0.00 0.00 39.69 2.57
5206 5604 2.365617 ACTACATACGGGGCAGAATGAG 59.634 50.000 0.00 0.00 39.69 2.90
5207 5605 1.204146 ACATACGGGGCAGAATGAGT 58.796 50.000 0.00 0.00 39.69 3.41
5208 5606 1.134401 ACATACGGGGCAGAATGAGTG 60.134 52.381 0.00 0.00 39.69 3.51
5209 5607 1.138859 CATACGGGGCAGAATGAGTGA 59.861 52.381 0.00 0.00 39.69 3.41
5210 5608 1.271856 TACGGGGCAGAATGAGTGAA 58.728 50.000 0.00 0.00 39.69 3.18
5211 5609 0.620556 ACGGGGCAGAATGAGTGAAT 59.379 50.000 0.00 0.00 39.69 2.57
5212 5610 1.303309 CGGGGCAGAATGAGTGAATC 58.697 55.000 0.00 0.00 39.69 2.52
5213 5611 1.134280 CGGGGCAGAATGAGTGAATCT 60.134 52.381 0.00 0.00 39.69 2.40
5214 5612 2.103094 CGGGGCAGAATGAGTGAATCTA 59.897 50.000 0.00 0.00 39.69 1.98
5215 5613 3.471680 GGGGCAGAATGAGTGAATCTAC 58.528 50.000 0.00 0.00 39.69 2.59
5216 5614 3.126831 GGGCAGAATGAGTGAATCTACG 58.873 50.000 0.00 0.00 39.69 3.51
5217 5615 2.541762 GGCAGAATGAGTGAATCTACGC 59.458 50.000 0.00 0.00 39.69 4.42
5218 5616 3.452474 GCAGAATGAGTGAATCTACGCT 58.548 45.455 0.00 0.00 39.69 5.07
5219 5617 3.489047 GCAGAATGAGTGAATCTACGCTC 59.511 47.826 0.00 0.00 44.55 5.03
5220 5618 4.736168 GCAGAATGAGTGAATCTACGCTCT 60.736 45.833 0.00 0.00 44.58 4.09
5221 5619 5.506483 GCAGAATGAGTGAATCTACGCTCTA 60.506 44.000 0.00 0.00 44.58 2.43
5222 5620 6.499172 CAGAATGAGTGAATCTACGCTCTAA 58.501 40.000 0.00 0.00 44.58 2.10
5223 5621 6.975197 CAGAATGAGTGAATCTACGCTCTAAA 59.025 38.462 0.00 0.00 44.58 1.85
5224 5622 7.489435 CAGAATGAGTGAATCTACGCTCTAAAA 59.511 37.037 0.00 0.00 44.58 1.52
5225 5623 8.200792 AGAATGAGTGAATCTACGCTCTAAAAT 58.799 33.333 0.00 0.00 44.58 1.82
5226 5624 9.464714 GAATGAGTGAATCTACGCTCTAAAATA 57.535 33.333 0.00 0.00 44.58 1.40
5227 5625 8.804688 ATGAGTGAATCTACGCTCTAAAATAC 57.195 34.615 0.00 0.00 44.58 1.89
5228 5626 6.910972 TGAGTGAATCTACGCTCTAAAATACG 59.089 38.462 0.00 0.00 44.58 3.06
5229 5627 6.793349 AGTGAATCTACGCTCTAAAATACGT 58.207 36.000 0.00 0.00 42.22 3.57
5230 5628 6.911511 AGTGAATCTACGCTCTAAAATACGTC 59.088 38.462 0.00 0.00 39.78 4.34
5231 5629 6.911511 GTGAATCTACGCTCTAAAATACGTCT 59.088 38.462 0.00 0.00 39.78 4.18
5232 5630 8.066595 GTGAATCTACGCTCTAAAATACGTCTA 58.933 37.037 0.00 0.00 39.78 2.59
5233 5631 8.781196 TGAATCTACGCTCTAAAATACGTCTAT 58.219 33.333 0.00 0.00 39.78 1.98
5308 5706 6.046643 AGGAACAGAGGGAGTATCTATCTGAT 59.953 42.308 14.47 0.00 44.71 2.90
5315 5713 9.836179 AGAGGGAGTATCTATCTGATTTTACAT 57.164 33.333 0.00 0.00 36.65 2.29
5331 5729 9.720667 TGATTTTACATGCTAAGATGAAAATCG 57.279 29.630 16.49 0.00 39.31 3.34
5374 5772 9.574516 AACTACAAAGAAACATACAAGGAGAAT 57.425 29.630 0.00 0.00 0.00 2.40
5484 5882 2.667536 GCTCGCCGCATGATGGAT 60.668 61.111 8.49 0.00 38.92 3.41
5552 5950 2.668550 GCAAGCCTTCGTCCCGTT 60.669 61.111 0.00 0.00 0.00 4.44
5627 6040 3.474570 GGAGTGCGCCCTGATCCT 61.475 66.667 4.18 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.457261 GCATCACATTAAACTCTTGAATCTTCT 58.543 33.333 0.00 0.00 0.00 2.85
61 62 0.726787 TACTACGTGCGTGTGCTTCG 60.727 55.000 7.55 4.57 43.34 3.79
80 84 6.819146 GTCTCCTGCTTTTATTTACTACTGCT 59.181 38.462 0.00 0.00 0.00 4.24
95 99 1.830477 GACATCCAGAGTCTCCTGCTT 59.170 52.381 0.00 0.00 33.29 3.91
97 101 0.102120 CGACATCCAGAGTCTCCTGC 59.898 60.000 0.00 0.00 33.89 4.85
98 102 1.403679 GACGACATCCAGAGTCTCCTG 59.596 57.143 0.00 0.00 33.89 3.86
99 103 1.757682 GACGACATCCAGAGTCTCCT 58.242 55.000 0.00 0.00 33.89 3.69
100 104 0.378962 CGACGACATCCAGAGTCTCC 59.621 60.000 0.00 0.00 33.89 3.71
101 105 1.062880 GACGACGACATCCAGAGTCTC 59.937 57.143 0.00 0.00 33.89 3.36
152 164 2.127383 GTCCGTTTTGCTTCGGCG 60.127 61.111 0.00 0.00 45.44 6.46
185 204 6.072230 GCAGGCTAAAAAGAAAATGAGAGAGT 60.072 38.462 0.00 0.00 0.00 3.24
300 321 8.251026 AGACTACATTTCATAACGAATCTGACA 58.749 33.333 0.00 0.00 32.32 3.58
344 365 6.157211 GCGTGGTGCTCTACAATAATAGTAT 58.843 40.000 3.15 0.00 41.73 2.12
347 368 3.741344 GGCGTGGTGCTCTACAATAATAG 59.259 47.826 3.15 0.00 45.43 1.73
349 370 2.093181 TGGCGTGGTGCTCTACAATAAT 60.093 45.455 3.15 0.00 45.43 1.28
352 373 0.036164 TTGGCGTGGTGCTCTACAAT 59.964 50.000 3.15 0.00 45.43 2.71
354 375 1.301401 GTTGGCGTGGTGCTCTACA 60.301 57.895 3.15 0.00 45.43 2.74
357 378 4.988598 CCGTTGGCGTGGTGCTCT 62.989 66.667 0.00 0.00 45.43 4.09
368 389 0.251165 ATTTGACCAGGACCCGTTGG 60.251 55.000 0.00 0.00 40.38 3.77
379 400 3.505680 CGGATTTGAAGTGGATTTGACCA 59.494 43.478 0.00 0.00 37.63 4.02
391 412 5.703130 AGAAGAAAAGGTCTCGGATTTGAAG 59.297 40.000 0.00 0.00 34.56 3.02
398 419 3.510360 CACCTAGAAGAAAAGGTCTCGGA 59.490 47.826 0.00 0.00 44.43 4.55
418 439 4.142859 CCGAGTGACTCAACTCTACTACAC 60.143 50.000 13.67 0.00 43.71 2.90
419 440 4.001652 CCGAGTGACTCAACTCTACTACA 58.998 47.826 13.67 0.00 43.71 2.74
421 442 3.008330 GCCGAGTGACTCAACTCTACTA 58.992 50.000 13.67 0.00 43.71 1.82
440 461 2.029844 GCTTCTGGTGAGTGTCGCC 61.030 63.158 0.00 0.00 46.90 5.54
479 500 2.354821 GGGTTTATCTGCTTTACTGCCG 59.645 50.000 0.00 0.00 0.00 5.69
499 520 1.168714 GGCAGGCAGAAAAGTGTAGG 58.831 55.000 0.00 0.00 0.00 3.18
513 534 0.460987 GGTTGATCAGTCTCGGCAGG 60.461 60.000 0.00 0.00 0.00 4.85
548 569 4.640771 AGCTCTTTGAGGTGTGGATTAA 57.359 40.909 0.00 0.00 39.04 1.40
625 762 7.888021 ACGATCTGAATCTGGAACTATCTATCT 59.112 37.037 0.00 0.00 0.00 1.98
626 763 7.967854 CACGATCTGAATCTGGAACTATCTATC 59.032 40.741 0.00 0.00 0.00 2.08
638 775 2.735823 TCGATGCACGATCTGAATCTG 58.264 47.619 7.20 5.67 46.45 2.90
691 858 2.680352 GAGCTGGTCGGGGAGTGA 60.680 66.667 0.00 0.00 0.00 3.41
701 868 3.132467 GGTAAAATACTCGAGGAGCTGGT 59.868 47.826 18.41 0.00 32.04 4.00
704 871 2.223758 GCGGTAAAATACTCGAGGAGCT 60.224 50.000 18.41 0.00 32.04 4.09
705 872 2.125685 GCGGTAAAATACTCGAGGAGC 58.874 52.381 18.41 1.77 32.04 4.70
706 873 3.066342 TGAGCGGTAAAATACTCGAGGAG 59.934 47.826 18.41 0.00 35.52 3.69
707 874 3.018856 TGAGCGGTAAAATACTCGAGGA 58.981 45.455 18.41 9.15 31.64 3.71
712 882 3.114065 CGGTCTGAGCGGTAAAATACTC 58.886 50.000 20.54 0.00 35.16 2.59
740 910 4.394712 GGGAGTGAGGTGGCGGTG 62.395 72.222 0.00 0.00 0.00 4.94
743 913 4.087892 CTGGGGAGTGAGGTGGCG 62.088 72.222 0.00 0.00 0.00 5.69
744 914 4.416738 GCTGGGGAGTGAGGTGGC 62.417 72.222 0.00 0.00 0.00 5.01
745 915 4.087892 CGCTGGGGAGTGAGGTGG 62.088 72.222 0.00 0.00 0.00 4.61
760 930 2.811317 CTCGGTTGGTCTGAGCGC 60.811 66.667 0.00 0.00 41.81 5.92
782 952 1.592223 GAGGAACGGTCTCTGGGTG 59.408 63.158 0.00 0.00 0.00 4.61
783 953 1.977544 CGAGGAACGGTCTCTGGGT 60.978 63.158 0.00 0.00 38.46 4.51
784 954 2.885861 CGAGGAACGGTCTCTGGG 59.114 66.667 0.00 0.00 38.46 4.45
853 1023 4.803426 GAGCGGCGAGGTGAGGTG 62.803 72.222 12.98 0.00 0.00 4.00
875 1049 1.785041 CGTGTGTGCTTCTGGTTGGG 61.785 60.000 0.00 0.00 0.00 4.12
1653 1877 2.436646 GGCTTGCTCGCTGGCTTA 60.437 61.111 6.62 0.00 0.00 3.09
1677 1901 2.450243 GGTGGTGGAGGAGGAGGA 59.550 66.667 0.00 0.00 0.00 3.71
1678 1902 2.122729 TGGTGGTGGAGGAGGAGG 59.877 66.667 0.00 0.00 0.00 4.30
1679 1903 2.294078 GGTGGTGGTGGAGGAGGAG 61.294 68.421 0.00 0.00 0.00 3.69
1680 1904 2.203938 GGTGGTGGTGGAGGAGGA 60.204 66.667 0.00 0.00 0.00 3.71
1717 1941 4.347453 CTTGGGCTTGGCGTGTGC 62.347 66.667 0.00 0.00 41.71 4.57
1776 2000 1.006805 CGATGAGCCGGATGAGGAC 60.007 63.158 5.05 0.00 0.00 3.85
1782 2006 4.286320 GGCGTCGATGAGCCGGAT 62.286 66.667 5.05 0.00 44.22 4.18
1791 2015 4.194720 GAGCAGGACGGCGTCGAT 62.195 66.667 31.02 20.63 40.11 3.59
1938 2165 4.796231 CCGCTTGAGGTCGACGGG 62.796 72.222 9.92 3.51 40.18 5.28
2025 2252 0.531200 GGTAGAACTCCACCACCTCG 59.469 60.000 0.00 0.00 34.77 4.63
2061 2288 1.599576 GCAGTCCCTCTTGGAGTCC 59.400 63.158 0.73 0.73 43.85 3.85
2193 2420 1.078347 GGGTGGATTTTGGGCTGGA 59.922 57.895 0.00 0.00 0.00 3.86
2217 2444 2.045926 GAGGGGCAATGTGCGACT 60.046 61.111 0.00 0.00 46.21 4.18
2218 2445 3.499737 CGAGGGGCAATGTGCGAC 61.500 66.667 0.00 0.00 46.21 5.19
2219 2446 3.545124 AACGAGGGGCAATGTGCGA 62.545 57.895 0.00 0.00 46.21 5.10
2220 2447 3.039202 GAACGAGGGGCAATGTGCG 62.039 63.158 0.00 0.00 46.21 5.34
2221 2448 1.648467 GAGAACGAGGGGCAATGTGC 61.648 60.000 0.00 0.00 44.08 4.57
2223 2450 0.400213 TTGAGAACGAGGGGCAATGT 59.600 50.000 0.00 0.00 0.00 2.71
2224 2451 1.672881 GATTGAGAACGAGGGGCAATG 59.327 52.381 0.00 0.00 30.06 2.82
2225 2452 1.281867 TGATTGAGAACGAGGGGCAAT 59.718 47.619 0.00 0.00 32.36 3.56
2226 2453 0.690192 TGATTGAGAACGAGGGGCAA 59.310 50.000 0.00 0.00 0.00 4.52
2228 2455 0.036388 TGTGATTGAGAACGAGGGGC 60.036 55.000 0.00 0.00 0.00 5.80
2229 2456 2.698855 ATGTGATTGAGAACGAGGGG 57.301 50.000 0.00 0.00 0.00 4.79
2231 2458 6.508563 CGAAATGTATGTGATTGAGAACGAGG 60.509 42.308 0.00 0.00 0.00 4.63
2232 2459 6.035005 ACGAAATGTATGTGATTGAGAACGAG 59.965 38.462 0.00 0.00 0.00 4.18
2233 2460 5.867174 ACGAAATGTATGTGATTGAGAACGA 59.133 36.000 0.00 0.00 0.00 3.85
2235 2462 7.743104 AGAACGAAATGTATGTGATTGAGAAC 58.257 34.615 0.00 0.00 0.00 3.01
2236 2463 7.201435 CGAGAACGAAATGTATGTGATTGAGAA 60.201 37.037 0.00 0.00 42.66 2.87
2237 2464 6.253512 CGAGAACGAAATGTATGTGATTGAGA 59.746 38.462 0.00 0.00 42.66 3.27
2238 2465 6.035005 ACGAGAACGAAATGTATGTGATTGAG 59.965 38.462 0.00 0.00 42.66 3.02
2239 2466 5.867174 ACGAGAACGAAATGTATGTGATTGA 59.133 36.000 0.00 0.00 42.66 2.57
2240 2467 6.094739 ACGAGAACGAAATGTATGTGATTG 57.905 37.500 0.00 0.00 42.66 2.67
2241 2468 6.721571 AACGAGAACGAAATGTATGTGATT 57.278 33.333 0.00 0.00 42.66 2.57
2242 2469 6.721571 AAACGAGAACGAAATGTATGTGAT 57.278 33.333 0.00 0.00 42.66 3.06
2243 2470 6.864685 AGTAAACGAGAACGAAATGTATGTGA 59.135 34.615 0.00 0.00 42.66 3.58
2244 2471 7.045725 AGTAAACGAGAACGAAATGTATGTG 57.954 36.000 0.00 0.00 42.66 3.21
2245 2472 7.647907 AAGTAAACGAGAACGAAATGTATGT 57.352 32.000 0.00 0.00 42.66 2.29
2246 2473 8.218441 TGAAAGTAAACGAGAACGAAATGTATG 58.782 33.333 0.00 0.00 42.66 2.39
2247 2474 8.301730 TGAAAGTAAACGAGAACGAAATGTAT 57.698 30.769 0.00 0.00 42.66 2.29
2248 2475 7.697352 TGAAAGTAAACGAGAACGAAATGTA 57.303 32.000 0.00 0.00 42.66 2.29
2249 2476 6.592798 TGAAAGTAAACGAGAACGAAATGT 57.407 33.333 0.00 0.00 42.66 2.71
2250 2477 8.488979 AAATGAAAGTAAACGAGAACGAAATG 57.511 30.769 0.00 0.00 42.66 2.32
2256 2483 7.320560 CGGAAGAAAATGAAAGTAAACGAGAAC 59.679 37.037 0.00 0.00 0.00 3.01
2257 2484 7.225145 TCGGAAGAAAATGAAAGTAAACGAGAA 59.775 33.333 0.00 0.00 37.03 2.87
2260 2487 6.847956 TCGGAAGAAAATGAAAGTAAACGA 57.152 33.333 0.00 0.00 37.03 3.85
2282 2509 2.447250 TGTCTAACGCGACGATGATTC 58.553 47.619 15.93 0.00 36.71 2.52
2283 2510 2.554806 TGTCTAACGCGACGATGATT 57.445 45.000 15.93 0.00 36.71 2.57
2324 2557 3.055905 GCGTCGGTTCTCGCGAAAG 62.056 63.158 11.33 0.00 42.79 2.62
2358 2591 4.129380 TGATTTGATCCATCCAACTAGCG 58.871 43.478 0.00 0.00 0.00 4.26
2390 2638 0.381801 CGTGCAAAGCAACCACTCTT 59.618 50.000 0.00 0.00 41.47 2.85
2416 2674 0.746204 TGGTGCTGCGTTCTTGTTCA 60.746 50.000 0.00 0.00 0.00 3.18
2479 2737 2.826287 TTGGTGTGTGCCGTGTGG 60.826 61.111 0.00 0.00 38.77 4.17
2515 2773 5.673514 TCATCTGTATGTTATTCAGCTGCA 58.326 37.500 9.47 0.00 34.50 4.41
2525 2783 8.533569 TCACCTCTGTATTCATCTGTATGTTA 57.466 34.615 0.00 0.00 34.50 2.41
2537 2795 7.657761 TGTTTCTCTCTTTTCACCTCTGTATTC 59.342 37.037 0.00 0.00 0.00 1.75
2564 2822 3.443925 GAGCAGGGAAAAGGCCGC 61.444 66.667 0.00 0.00 0.00 6.53
2565 2823 1.379044 ATGAGCAGGGAAAAGGCCG 60.379 57.895 0.00 0.00 0.00 6.13
2574 2832 2.222007 CTCGAGAAAGATGAGCAGGG 57.778 55.000 6.58 0.00 0.00 4.45
2607 2866 1.007118 GGGTGGGTTTCTCCATGGAAT 59.993 52.381 17.00 0.00 39.26 3.01
2620 2879 2.204136 TGCATGAGAGGGGTGGGT 60.204 61.111 0.00 0.00 0.00 4.51
2627 2886 2.792290 CGAACGCGTGCATGAGAGG 61.792 63.158 19.21 0.00 0.00 3.69
2685 2947 3.954904 TGTCCTATCCTAGTGAGTTGAGC 59.045 47.826 0.00 0.00 0.00 4.26
2695 2957 4.503296 CCCAACCGAATTGTCCTATCCTAG 60.503 50.000 0.00 0.00 36.47 3.02
2698 2960 2.171870 TCCCAACCGAATTGTCCTATCC 59.828 50.000 0.00 0.00 36.47 2.59
2769 3036 0.987613 TGCTATGCCCTGGATCCACA 60.988 55.000 11.44 8.30 0.00 4.17
2785 3052 2.601905 AGCAACTTTGGATCCTTTGCT 58.398 42.857 25.30 25.30 46.23 3.91
2834 3101 3.655810 CTGGTCAGCGTGCTCCTCC 62.656 68.421 0.00 0.00 0.00 4.30
2835 3102 2.125753 CTGGTCAGCGTGCTCCTC 60.126 66.667 0.00 0.00 0.00 3.71
2836 3103 2.601666 TCTGGTCAGCGTGCTCCT 60.602 61.111 0.00 0.00 0.00 3.69
2934 3207 1.080434 GACAGGTCCACGAGACTGC 60.080 63.158 9.58 0.00 45.54 4.40
3070 3352 3.119388 GCATGATCAACAGCTTTTAGGCA 60.119 43.478 0.00 0.00 34.17 4.75
3080 3362 2.559668 ACCAACCAAGCATGATCAACAG 59.440 45.455 0.00 0.00 0.00 3.16
3082 3364 3.319755 CAACCAACCAAGCATGATCAAC 58.680 45.455 0.00 0.00 0.00 3.18
3095 3377 5.363939 TCAATCAAATCAAACCAACCAACC 58.636 37.500 0.00 0.00 0.00 3.77
3096 3378 6.073112 CCATCAATCAAATCAAACCAACCAAC 60.073 38.462 0.00 0.00 0.00 3.77
3099 3381 4.937015 CCCATCAATCAAATCAAACCAACC 59.063 41.667 0.00 0.00 0.00 3.77
3101 3383 4.019501 CCCCCATCAATCAAATCAAACCAA 60.020 41.667 0.00 0.00 0.00 3.67
3102 3384 3.518705 CCCCCATCAATCAAATCAAACCA 59.481 43.478 0.00 0.00 0.00 3.67
3103 3385 3.774216 TCCCCCATCAATCAAATCAAACC 59.226 43.478 0.00 0.00 0.00 3.27
3105 3387 6.416415 CATTTCCCCCATCAATCAAATCAAA 58.584 36.000 0.00 0.00 0.00 2.69
3109 3405 4.373495 ACCATTTCCCCCATCAATCAAAT 58.627 39.130 0.00 0.00 0.00 2.32
3112 3408 3.106054 CAACCATTTCCCCCATCAATCA 58.894 45.455 0.00 0.00 0.00 2.57
3123 3419 4.438744 CGTCAGGCTTAATCAACCATTTCC 60.439 45.833 0.00 0.00 0.00 3.13
3125 3421 3.443681 CCGTCAGGCTTAATCAACCATTT 59.556 43.478 0.00 0.00 0.00 2.32
3129 3425 2.396590 TCCGTCAGGCTTAATCAACC 57.603 50.000 0.00 0.00 37.47 3.77
3130 3426 3.689649 ACATTCCGTCAGGCTTAATCAAC 59.310 43.478 0.00 0.00 37.47 3.18
3133 3429 4.394920 TCAAACATTCCGTCAGGCTTAATC 59.605 41.667 0.00 0.00 37.47 1.75
3149 3445 2.364970 CAACCCCACACACATCAAACAT 59.635 45.455 0.00 0.00 0.00 2.71
3331 3629 2.678934 CTTGGGACGACGGAGGGA 60.679 66.667 0.00 0.00 0.00 4.20
3366 3668 2.993471 GCATCAGCCACCAAACCCG 61.993 63.158 0.00 0.00 33.58 5.28
3370 3672 2.367894 TGAAAATGCATCAGCCACCAAA 59.632 40.909 0.00 0.00 41.13 3.28
3372 3674 1.630223 TGAAAATGCATCAGCCACCA 58.370 45.000 0.00 0.00 41.13 4.17
3753 4108 3.576982 AGTTTACCTGACTGACGATTCCA 59.423 43.478 0.00 0.00 0.00 3.53
3774 4129 5.124617 TGTCATGTGCTACTAGAGAACTGAG 59.875 44.000 0.00 0.00 34.27 3.35
3781 4136 4.972514 TGTCTGTCATGTGCTACTAGAG 57.027 45.455 0.00 0.00 0.00 2.43
3799 4154 8.429493 TCAAATGATTGATCTGTCTGTATGTC 57.571 34.615 0.00 0.00 40.59 3.06
3803 4158 8.620116 TTGTTCAAATGATTGATCTGTCTGTA 57.380 30.769 0.00 0.00 44.70 2.74
3807 4162 6.384224 TGCTTGTTCAAATGATTGATCTGTC 58.616 36.000 0.00 0.00 44.70 3.51
3978 4333 0.238289 GAACACCGACACAAGCCATG 59.762 55.000 0.00 0.00 0.00 3.66
4019 4374 2.489971 CACTAGTCCCTGCGAAAAACA 58.510 47.619 0.00 0.00 0.00 2.83
4026 4381 0.392998 ATTTGCCACTAGTCCCTGCG 60.393 55.000 0.00 0.00 0.00 5.18
4032 4387 6.640092 GGTACTATCGTTATTTGCCACTAGTC 59.360 42.308 0.00 0.00 0.00 2.59
4048 4403 4.208746 AGTCTCTGAAAGGGGTACTATCG 58.791 47.826 0.00 0.00 32.73 2.92
4060 4415 5.635280 CAGATTTGCGTCTTAGTCTCTGAAA 59.365 40.000 0.00 0.00 32.55 2.69
4064 4419 5.164954 GTTCAGATTTGCGTCTTAGTCTCT 58.835 41.667 0.00 0.00 0.00 3.10
4067 4422 3.918591 TCGTTCAGATTTGCGTCTTAGTC 59.081 43.478 0.00 0.00 0.00 2.59
4088 4443 4.933330 TCTAGCACCAATACGATCAGTTC 58.067 43.478 0.00 0.00 0.00 3.01
4089 4444 5.537300 ATCTAGCACCAATACGATCAGTT 57.463 39.130 0.00 0.00 0.00 3.16
4124 4479 5.927954 TTTCCTGTGACGGTTGTAAATAC 57.072 39.130 0.00 0.00 0.00 1.89
4140 4495 7.756558 TGTTTGCCTTTTTGTTTAATTTCCTG 58.243 30.769 0.00 0.00 0.00 3.86
4219 4575 4.156455 TCCTACTGAAAATCCATCTGCC 57.844 45.455 0.00 0.00 0.00 4.85
4285 4642 4.400845 CAGCTTCGACAAATGAACAGATG 58.599 43.478 0.00 0.00 0.00 2.90
4409 4767 1.105759 GCAGACCAGGATCATTGCCC 61.106 60.000 0.00 0.00 0.00 5.36
4570 4949 5.526115 CAGCATCAAGACATTCAACTTGTT 58.474 37.500 0.00 0.00 42.50 2.83
4580 4959 3.277142 TGATCTGCAGCATCAAGACAT 57.723 42.857 19.88 3.04 0.00 3.06
4620 4999 3.432890 CCCTTCTCAGATACTTCCTTGCC 60.433 52.174 0.00 0.00 0.00 4.52
4671 5050 1.975327 CTCTTCTTCGTCAGGGCCA 59.025 57.895 6.18 0.00 0.00 5.36
4677 5056 2.001812 GCATGAGCTCTTCTTCGTCA 57.998 50.000 16.19 0.00 37.91 4.35
4698 5077 3.379445 GCGAACCGGACTCCCTGA 61.379 66.667 9.46 0.00 0.00 3.86
4735 5114 1.566298 AATGGAGGAGCTGTGGGGTC 61.566 60.000 0.00 0.00 41.31 4.46
4773 5152 1.974957 CCATGTCCGTGTATGGGGATA 59.025 52.381 0.00 0.00 40.11 2.59
4784 5163 1.003580 AGAATTGAGCACCATGTCCGT 59.996 47.619 0.00 0.00 0.00 4.69
4785 5164 1.742761 AGAATTGAGCACCATGTCCG 58.257 50.000 0.00 0.00 0.00 4.79
4795 5174 2.348032 GCACGAAGCGATAGAATTGAGC 60.348 50.000 0.00 0.00 39.76 4.26
4813 5198 4.980805 TCCACCCGCGAACTGCAC 62.981 66.667 8.23 0.00 46.97 4.57
5070 5458 1.303309 AGCAAACACACAGACTCTGC 58.697 50.000 5.92 0.00 34.37 4.26
5078 5466 6.094186 TGTTCACAAGTTATAGCAAACACACA 59.906 34.615 0.00 0.00 0.00 3.72
5119 5517 4.142138 GGAGTACATATCATCTAAGCGGGG 60.142 50.000 0.00 0.00 0.00 5.73
5125 5523 5.391256 ACGGTGGGAGTACATATCATCTAA 58.609 41.667 0.00 0.00 0.00 2.10
5138 5536 7.949006 AGACTTATATATAGAAACGGTGGGAGT 59.051 37.037 0.00 0.00 0.00 3.85
5139 5537 8.350852 AGACTTATATATAGAAACGGTGGGAG 57.649 38.462 0.00 0.00 0.00 4.30
5140 5538 8.716674 AAGACTTATATATAGAAACGGTGGGA 57.283 34.615 0.00 0.00 0.00 4.37
5141 5539 9.774413 AAAAGACTTATATATAGAAACGGTGGG 57.226 33.333 0.00 0.00 0.00 4.61
5170 5568 8.750298 CCCGTATGTAGTCCATATTAGAATCTT 58.250 37.037 0.00 0.00 38.29 2.40
5171 5569 7.342284 CCCCGTATGTAGTCCATATTAGAATCT 59.658 40.741 0.00 0.00 38.29 2.40
5172 5570 7.490000 CCCCGTATGTAGTCCATATTAGAATC 58.510 42.308 0.00 0.00 38.29 2.52
5173 5571 6.127140 GCCCCGTATGTAGTCCATATTAGAAT 60.127 42.308 0.00 0.00 38.29 2.40
5174 5572 5.186409 GCCCCGTATGTAGTCCATATTAGAA 59.814 44.000 0.00 0.00 38.29 2.10
5175 5573 4.708421 GCCCCGTATGTAGTCCATATTAGA 59.292 45.833 0.00 0.00 38.29 2.10
5176 5574 4.464951 TGCCCCGTATGTAGTCCATATTAG 59.535 45.833 0.00 0.00 38.29 1.73
5177 5575 4.418359 TGCCCCGTATGTAGTCCATATTA 58.582 43.478 0.00 0.00 38.29 0.98
5178 5576 3.244582 TGCCCCGTATGTAGTCCATATT 58.755 45.455 0.00 0.00 38.29 1.28
5179 5577 2.832129 CTGCCCCGTATGTAGTCCATAT 59.168 50.000 0.00 0.00 38.29 1.78
5180 5578 2.158430 TCTGCCCCGTATGTAGTCCATA 60.158 50.000 0.00 0.00 34.86 2.74
5181 5579 1.048601 CTGCCCCGTATGTAGTCCAT 58.951 55.000 0.00 0.00 37.58 3.41
5182 5580 0.032912 TCTGCCCCGTATGTAGTCCA 60.033 55.000 0.00 0.00 0.00 4.02
5183 5581 1.117150 TTCTGCCCCGTATGTAGTCC 58.883 55.000 0.00 0.00 0.00 3.85
5184 5582 2.364324 TCATTCTGCCCCGTATGTAGTC 59.636 50.000 0.00 0.00 0.00 2.59
5185 5583 2.365617 CTCATTCTGCCCCGTATGTAGT 59.634 50.000 0.00 0.00 0.00 2.73
5186 5584 2.365617 ACTCATTCTGCCCCGTATGTAG 59.634 50.000 0.00 0.00 0.00 2.74
5187 5585 2.102420 CACTCATTCTGCCCCGTATGTA 59.898 50.000 0.00 0.00 0.00 2.29
5188 5586 1.134401 CACTCATTCTGCCCCGTATGT 60.134 52.381 0.00 0.00 0.00 2.29
5189 5587 1.138859 TCACTCATTCTGCCCCGTATG 59.861 52.381 0.00 0.00 0.00 2.39
5190 5588 1.496060 TCACTCATTCTGCCCCGTAT 58.504 50.000 0.00 0.00 0.00 3.06
5191 5589 1.271856 TTCACTCATTCTGCCCCGTA 58.728 50.000 0.00 0.00 0.00 4.02
5192 5590 0.620556 ATTCACTCATTCTGCCCCGT 59.379 50.000 0.00 0.00 0.00 5.28
5193 5591 1.134280 AGATTCACTCATTCTGCCCCG 60.134 52.381 0.00 0.00 0.00 5.73
5194 5592 2.725221 AGATTCACTCATTCTGCCCC 57.275 50.000 0.00 0.00 0.00 5.80
5195 5593 3.126831 CGTAGATTCACTCATTCTGCCC 58.873 50.000 0.00 0.00 0.00 5.36
5196 5594 2.541762 GCGTAGATTCACTCATTCTGCC 59.458 50.000 0.00 0.00 0.00 4.85
5197 5595 3.452474 AGCGTAGATTCACTCATTCTGC 58.548 45.455 0.00 0.00 0.00 4.26
5198 5596 4.930963 AGAGCGTAGATTCACTCATTCTG 58.069 43.478 0.00 0.00 0.00 3.02
5199 5597 6.701145 TTAGAGCGTAGATTCACTCATTCT 57.299 37.500 0.00 0.00 0.00 2.40
5200 5598 7.757097 TTTTAGAGCGTAGATTCACTCATTC 57.243 36.000 0.00 0.00 0.00 2.67
5201 5599 9.250624 GTATTTTAGAGCGTAGATTCACTCATT 57.749 33.333 0.00 0.00 0.00 2.57
5202 5600 7.591795 CGTATTTTAGAGCGTAGATTCACTCAT 59.408 37.037 0.00 0.00 0.00 2.90
5203 5601 6.910972 CGTATTTTAGAGCGTAGATTCACTCA 59.089 38.462 0.00 0.00 0.00 3.41
5204 5602 6.911511 ACGTATTTTAGAGCGTAGATTCACTC 59.088 38.462 0.00 0.00 35.71 3.51
5205 5603 6.793349 ACGTATTTTAGAGCGTAGATTCACT 58.207 36.000 0.00 0.00 35.71 3.41
5206 5604 6.911511 AGACGTATTTTAGAGCGTAGATTCAC 59.088 38.462 0.00 0.00 37.71 3.18
5207 5605 7.024340 AGACGTATTTTAGAGCGTAGATTCA 57.976 36.000 0.00 0.00 37.71 2.57
5226 5624 9.622004 GCACTACATACAAATGTATATAGACGT 57.378 33.333 20.22 10.11 45.33 4.34
5227 5625 9.620660 TGCACTACATACAAATGTATATAGACG 57.379 33.333 20.22 13.47 45.33 4.18
5281 5679 7.073853 TCAGATAGATACTCCCTCTGTTCCTAA 59.926 40.741 0.00 0.00 35.83 2.69
5289 5687 9.836179 ATGTAAAATCAGATAGATACTCCCTCT 57.164 33.333 0.00 0.00 35.39 3.69
5308 5706 7.967854 CACCGATTTTCATCTTAGCATGTAAAA 59.032 33.333 0.00 0.00 29.91 1.52
5315 5713 2.682856 GCCACCGATTTTCATCTTAGCA 59.317 45.455 0.00 0.00 0.00 3.49
5331 5729 5.112686 TGTAGTTTGTCAAAATTTGCCACC 58.887 37.500 3.26 0.00 0.00 4.61
5353 5751 7.540055 GCTCAATTCTCCTTGTATGTTTCTTTG 59.460 37.037 0.00 0.00 0.00 2.77
5484 5882 1.911357 AGCCTGGACATGAACATGAGA 59.089 47.619 19.56 4.09 41.20 3.27
5627 6040 4.988716 AGGACGACGGGCAGGACA 62.989 66.667 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.