Multiple sequence alignment - TraesCS1D01G419300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G419300 chr1D 100.000 5157 0 0 1 5157 476260814 476255658 0.000000e+00 9524.0
1 TraesCS1D01G419300 chr1B 93.876 3511 114 35 1681 5157 662558357 662554914 0.000000e+00 5199.0
2 TraesCS1D01G419300 chr1B 88.833 797 33 22 864 1632 662559140 662558372 0.000000e+00 928.0
3 TraesCS1D01G419300 chr1B 85.714 77 7 3 518 593 643951853 643951780 1.540000e-10 78.7
4 TraesCS1D01G419300 chr1B 77.206 136 26 5 1 134 310342379 310342247 1.990000e-09 75.0
5 TraesCS1D01G419300 chr1A 95.040 2520 93 17 1659 4163 572022450 572019948 0.000000e+00 3932.0
6 TraesCS1D01G419300 chr1A 85.370 1121 82 32 553 1645 572023501 572022435 0.000000e+00 1086.0
7 TraesCS1D01G419300 chr1A 96.176 340 8 4 4822 5157 572019303 572018965 7.550000e-153 551.0
8 TraesCS1D01G419300 chr1A 83.415 609 61 22 4226 4803 572019947 572019348 3.540000e-146 529.0
9 TraesCS1D01G419300 chr2B 81.612 794 118 24 2578 3353 143275992 143276775 2.620000e-177 632.0
10 TraesCS1D01G419300 chr2B 81.458 480 77 12 2880 3353 143741944 143742417 2.910000e-102 383.0
11 TraesCS1D01G419300 chr2B 86.161 224 27 2 3392 3612 143276883 143277105 6.670000e-59 239.0
12 TraesCS1D01G419300 chr2B 90.058 171 15 2 4987 5156 143272708 143272877 2.420000e-53 220.0
13 TraesCS1D01G419300 chr2D 79.675 861 115 36 2526 3353 90503669 90504502 2.700000e-157 566.0
14 TraesCS1D01G419300 chr2D 79.287 589 61 32 1708 2280 90502892 90503435 6.350000e-94 355.0
15 TraesCS1D01G419300 chr2D 90.291 206 16 4 2880 3083 90710450 90710653 3.060000e-67 267.0
16 TraesCS1D01G419300 chr2D 84.914 232 23 5 3392 3612 90504609 90504839 1.870000e-54 224.0
17 TraesCS1D01G419300 chr2D 89.474 171 18 0 4987 5157 90500453 90500623 3.130000e-52 217.0
18 TraesCS1D01G419300 chr2D 79.747 237 37 9 3805 4037 90504889 90505118 1.490000e-35 161.0
19 TraesCS1D01G419300 chr2D 85.577 104 9 4 518 619 96747486 96747585 2.540000e-18 104.0
20 TraesCS1D01G419300 chr2A 83.414 621 83 17 2748 3353 90423438 90424053 4.510000e-155 558.0
21 TraesCS1D01G419300 chr2A 80.046 436 69 12 2929 3353 90518257 90518685 1.800000e-79 307.0
22 TraesCS1D01G419300 chr2A 88.824 170 19 0 4987 5156 90416103 90416272 5.230000e-50 209.0
23 TraesCS1D01G419300 chr5B 90.323 93 9 0 501 593 628813722 628813814 7.010000e-24 122.0
24 TraesCS1D01G419300 chr5B 85.345 116 16 1 503 618 625214498 625214612 9.070000e-23 119.0
25 TraesCS1D01G419300 chr6B 81.679 131 20 4 8 137 290586502 290586375 7.060000e-19 106.0
26 TraesCS1D01G419300 chr5A 82.400 125 15 6 485 607 7453239 7453358 9.140000e-18 102.0
27 TraesCS1D01G419300 chr4A 81.000 100 15 3 520 618 666182409 666182505 5.540000e-10 76.8
28 TraesCS1D01G419300 chrUn 92.157 51 4 0 519 569 137762353 137762303 7.160000e-09 73.1
29 TraesCS1D01G419300 chr7A 97.368 38 1 0 1 38 486174068 486174031 1.200000e-06 65.8
30 TraesCS1D01G419300 chr6D 100.000 28 0 0 4204 4231 469962363 469962336 9.000000e-03 52.8
31 TraesCS1D01G419300 chr3D 100.000 28 0 0 4204 4231 591723017 591722990 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G419300 chr1D 476255658 476260814 5156 True 9524.000000 9524 100.000000 1 5157 1 chr1D.!!$R1 5156
1 TraesCS1D01G419300 chr1B 662554914 662559140 4226 True 3063.500000 5199 91.354500 864 5157 2 chr1B.!!$R3 4293
2 TraesCS1D01G419300 chr1A 572018965 572023501 4536 True 1524.500000 3932 90.000250 553 5157 4 chr1A.!!$R1 4604
3 TraesCS1D01G419300 chr2B 143272708 143277105 4397 False 363.666667 632 85.943667 2578 5156 3 chr2B.!!$F2 2578
4 TraesCS1D01G419300 chr2D 90500453 90505118 4665 False 304.600000 566 82.619400 1708 5157 5 chr2D.!!$F3 3449
5 TraesCS1D01G419300 chr2A 90423438 90424053 615 False 558.000000 558 83.414000 2748 3353 1 chr2A.!!$F2 605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
351 352 0.034756 ACCAATACGCTGCAGACACA 59.965 50.000 20.43 0.0 0.0 3.72 F
762 764 0.108615 CGTCTCTTCATCGGCCACTT 60.109 55.000 2.24 0.0 0.0 3.16 F
792 794 0.165944 CACATGAACGTTTCGAGGCC 59.834 55.000 0.46 0.0 0.0 5.19 F
1640 1708 0.319900 ACAGCAGCAATCGAACGACT 60.320 50.000 0.00 0.0 0.0 4.18 F
2933 3688 1.618837 GTTCTTTCCAGCCCTTTTCCC 59.381 52.381 0.00 0.0 0.0 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1453 1484 0.390735 ACCATCGGAGGTAACGCAAC 60.391 55.000 0.00 0.00 40.98 4.17 R
1985 2724 1.003580 GTGGATCCTGCAAGAAGTCCA 59.996 52.381 14.23 3.89 36.61 4.02 R
2674 3413 7.450074 CAAAACTGTAGCCAGGGTATATCATA 58.550 38.462 0.54 0.00 43.36 2.15 R
3283 4050 0.394352 ATTCACGGGCATGGGAAGTC 60.394 55.000 0.00 0.00 0.00 3.01 R
4163 5019 0.182537 TTGCATTATGGGACGGAGGG 59.817 55.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.202932 CGGTCTTCTCCGGCATGG 60.203 66.667 0.00 0.00 45.88 3.66
21 22 2.514824 GGTCTTCTCCGGCATGGC 60.515 66.667 9.69 9.69 37.80 4.40
23 24 4.161295 TCTTCTCCGGCATGGCGG 62.161 66.667 45.10 45.10 37.80 6.13
32 33 3.228759 GCATGGCGGGCAATGGAT 61.229 61.111 8.78 0.00 0.00 3.41
34 35 2.203538 ATGGCGGGCAATGGATCC 60.204 61.111 8.78 4.20 0.00 3.36
37 38 3.279875 GCGGGCAATGGATCCGAC 61.280 66.667 7.39 0.00 45.96 4.79
38 39 2.505982 CGGGCAATGGATCCGACT 59.494 61.111 7.39 0.00 45.96 4.18
39 40 1.153168 CGGGCAATGGATCCGACTT 60.153 57.895 7.39 0.00 45.96 3.01
40 41 1.160329 CGGGCAATGGATCCGACTTC 61.160 60.000 7.39 0.00 45.96 3.01
41 42 0.107214 GGGCAATGGATCCGACTTCA 60.107 55.000 7.39 0.00 0.00 3.02
42 43 1.681780 GGGCAATGGATCCGACTTCAA 60.682 52.381 7.39 0.00 0.00 2.69
43 44 1.672881 GGCAATGGATCCGACTTCAAG 59.327 52.381 7.39 0.00 0.00 3.02
44 45 2.632377 GCAATGGATCCGACTTCAAGA 58.368 47.619 7.39 0.00 0.00 3.02
45 46 3.209410 GCAATGGATCCGACTTCAAGAT 58.791 45.455 7.39 0.00 0.00 2.40
47 48 4.701765 CAATGGATCCGACTTCAAGATCT 58.298 43.478 7.39 0.00 37.24 2.75
48 49 4.599047 ATGGATCCGACTTCAAGATCTC 57.401 45.455 7.39 0.00 37.24 2.75
49 50 2.695666 TGGATCCGACTTCAAGATCTCC 59.304 50.000 7.39 0.00 37.24 3.71
50 51 2.962421 GGATCCGACTTCAAGATCTCCT 59.038 50.000 0.00 0.00 37.24 3.69
52 53 3.087370 TCCGACTTCAAGATCTCCTGA 57.913 47.619 0.00 0.00 0.00 3.86
53 54 3.636679 TCCGACTTCAAGATCTCCTGAT 58.363 45.455 0.00 0.00 35.26 2.90
64 65 4.057406 GATCTCCTGATCTGTTGACTGG 57.943 50.000 0.00 0.00 44.19 4.00
65 66 2.182827 TCTCCTGATCTGTTGACTGGG 58.817 52.381 0.00 0.00 0.00 4.45
66 67 2.182827 CTCCTGATCTGTTGACTGGGA 58.817 52.381 0.00 0.00 0.00 4.37
68 69 1.065854 CCTGATCTGTTGACTGGGACC 60.066 57.143 0.00 0.00 0.00 4.46
69 70 1.905215 CTGATCTGTTGACTGGGACCT 59.095 52.381 0.00 0.00 0.00 3.85
71 72 1.902508 GATCTGTTGACTGGGACCTCA 59.097 52.381 0.00 0.00 0.00 3.86
72 73 2.030027 TCTGTTGACTGGGACCTCAT 57.970 50.000 0.00 0.00 0.00 2.90
73 74 2.338809 TCTGTTGACTGGGACCTCATT 58.661 47.619 0.00 0.00 0.00 2.57
75 76 1.351017 TGTTGACTGGGACCTCATTCC 59.649 52.381 0.00 0.00 34.52 3.01
76 77 1.351017 GTTGACTGGGACCTCATTCCA 59.649 52.381 0.00 0.00 37.40 3.53
77 78 1.971149 TGACTGGGACCTCATTCCAT 58.029 50.000 0.00 0.00 37.40 3.41
79 80 1.561542 GACTGGGACCTCATTCCATGT 59.438 52.381 0.00 0.00 37.40 3.21
80 81 1.283029 ACTGGGACCTCATTCCATGTG 59.717 52.381 0.00 0.00 37.40 3.21
81 82 0.625316 TGGGACCTCATTCCATGTGG 59.375 55.000 3.74 3.74 46.57 4.17
82 83 0.106519 GGGACCTCATTCCATGTGGG 60.107 60.000 9.15 4.15 45.70 4.61
83 84 0.106519 GGACCTCATTCCATGTGGGG 60.107 60.000 9.15 0.00 45.70 4.96
84 85 0.918983 GACCTCATTCCATGTGGGGA 59.081 55.000 7.68 0.00 45.70 4.81
85 86 0.625849 ACCTCATTCCATGTGGGGAC 59.374 55.000 7.68 0.00 45.70 4.46
87 88 0.541392 CTCATTCCATGTGGGGACGA 59.459 55.000 0.00 0.00 36.46 4.20
88 89 0.541392 TCATTCCATGTGGGGACGAG 59.459 55.000 0.00 0.00 36.46 4.18
89 90 0.464373 CATTCCATGTGGGGACGAGG 60.464 60.000 0.00 0.00 36.46 4.63
90 91 0.620410 ATTCCATGTGGGGACGAGGA 60.620 55.000 0.00 0.00 36.46 3.71
91 92 1.264749 TTCCATGTGGGGACGAGGAG 61.265 60.000 0.00 0.00 36.46 3.69
93 94 1.685765 CATGTGGGGACGAGGAGGA 60.686 63.158 0.00 0.00 0.00 3.71
95 96 1.875422 ATGTGGGGACGAGGAGGAGA 61.875 60.000 0.00 0.00 0.00 3.71
96 97 1.075896 GTGGGGACGAGGAGGAGAT 60.076 63.158 0.00 0.00 0.00 2.75
97 98 1.075970 TGGGGACGAGGAGGAGATG 60.076 63.158 0.00 0.00 0.00 2.90
99 100 2.503382 GGGACGAGGAGGAGATGGC 61.503 68.421 0.00 0.00 0.00 4.40
101 102 2.835431 ACGAGGAGGAGATGGCCG 60.835 66.667 0.00 0.00 0.00 6.13
102 103 2.835431 CGAGGAGGAGATGGCCGT 60.835 66.667 0.00 0.00 0.00 5.68
103 104 2.851071 CGAGGAGGAGATGGCCGTC 61.851 68.421 17.85 17.85 0.00 4.79
106 107 2.501610 GAGGAGATGGCCGTCCAC 59.498 66.667 21.73 14.33 46.92 4.02
107 108 2.039624 AGGAGATGGCCGTCCACT 59.960 61.111 21.73 16.40 46.92 4.00
108 109 1.613630 AGGAGATGGCCGTCCACTT 60.614 57.895 21.73 9.72 46.92 3.16
109 110 1.450312 GGAGATGGCCGTCCACTTG 60.450 63.158 21.73 0.00 46.92 3.16
116 117 3.382111 CCGTCCACTTGGCTCTCT 58.618 61.111 0.00 0.00 34.44 3.10
117 118 2.579878 CCGTCCACTTGGCTCTCTA 58.420 57.895 0.00 0.00 34.44 2.43
118 119 0.173708 CCGTCCACTTGGCTCTCTAC 59.826 60.000 0.00 0.00 34.44 2.59
119 120 1.178276 CGTCCACTTGGCTCTCTACT 58.822 55.000 0.00 0.00 34.44 2.57
120 121 1.135257 CGTCCACTTGGCTCTCTACTG 60.135 57.143 0.00 0.00 34.44 2.74
121 122 0.898320 TCCACTTGGCTCTCTACTGC 59.102 55.000 0.00 0.00 34.44 4.40
122 123 0.901124 CCACTTGGCTCTCTACTGCT 59.099 55.000 0.00 0.00 0.00 4.24
123 124 1.134848 CCACTTGGCTCTCTACTGCTC 60.135 57.143 0.00 0.00 0.00 4.26
127 128 2.494530 GGCTCTCTACTGCTCCCGG 61.495 68.421 0.00 0.00 0.00 5.73
128 129 2.494530 GCTCTCTACTGCTCCCGGG 61.495 68.421 16.85 16.85 0.00 5.73
129 130 1.227664 CTCTCTACTGCTCCCGGGA 59.772 63.158 25.06 25.06 0.00 5.14
130 131 1.076923 TCTCTACTGCTCCCGGGAC 60.077 63.158 22.63 17.40 0.00 4.46
145 146 2.579787 GACGAGTGTGCCCGATCG 60.580 66.667 8.51 8.51 40.86 3.69
147 148 3.822192 CGAGTGTGCCCGATCGGA 61.822 66.667 35.42 14.15 37.50 4.55
148 149 2.105128 GAGTGTGCCCGATCGGAG 59.895 66.667 35.42 24.46 37.50 4.63
149 150 2.680352 AGTGTGCCCGATCGGAGT 60.680 61.111 35.42 15.30 37.50 3.85
150 151 2.227089 GAGTGTGCCCGATCGGAGTT 62.227 60.000 35.42 13.80 37.50 3.01
152 153 0.527817 GTGTGCCCGATCGGAGTTAG 60.528 60.000 35.42 18.77 37.50 2.34
153 154 0.681887 TGTGCCCGATCGGAGTTAGA 60.682 55.000 35.42 13.41 37.50 2.10
154 155 0.248949 GTGCCCGATCGGAGTTAGAC 60.249 60.000 35.42 16.63 37.50 2.59
155 156 0.395311 TGCCCGATCGGAGTTAGACT 60.395 55.000 35.42 0.00 37.50 3.24
159 160 2.485835 CCCGATCGGAGTTAGACTCTCT 60.486 54.545 35.42 0.00 44.46 3.10
160 161 2.803956 CCGATCGGAGTTAGACTCTCTC 59.196 54.545 30.62 2.76 44.46 3.20
164 165 0.658897 GGAGTTAGACTCTCTCCGCG 59.341 60.000 0.00 0.00 44.46 6.46
165 166 0.658897 GAGTTAGACTCTCTCCGCGG 59.341 60.000 22.12 22.12 41.88 6.46
166 167 0.748729 AGTTAGACTCTCTCCGCGGG 60.749 60.000 27.83 16.54 0.00 6.13
167 168 0.747283 GTTAGACTCTCTCCGCGGGA 60.747 60.000 27.83 20.03 0.00 5.14
168 169 0.034767 TTAGACTCTCTCCGCGGGAA 60.035 55.000 27.83 13.00 0.00 3.97
169 170 0.747283 TAGACTCTCTCCGCGGGAAC 60.747 60.000 27.83 11.33 0.00 3.62
183 184 1.602323 GGAACCCATTGTGTCCGCA 60.602 57.895 0.00 0.00 0.00 5.69
184 185 1.579429 GAACCCATTGTGTCCGCAC 59.421 57.895 0.00 0.00 45.44 5.34
192 193 4.818417 GTGTCCGCACAAATGACG 57.182 55.556 0.00 0.00 44.64 4.35
193 194 1.440353 GTGTCCGCACAAATGACGC 60.440 57.895 0.00 0.00 44.64 5.19
195 196 1.163420 TGTCCGCACAAATGACGCTT 61.163 50.000 0.00 0.00 0.00 4.68
196 197 0.725784 GTCCGCACAAATGACGCTTG 60.726 55.000 0.00 0.00 0.00 4.01
197 198 1.442520 CCGCACAAATGACGCTTGG 60.443 57.895 0.00 0.00 0.00 3.61
198 199 1.573932 CGCACAAATGACGCTTGGA 59.426 52.632 0.00 0.00 0.00 3.53
199 200 0.168788 CGCACAAATGACGCTTGGAT 59.831 50.000 0.00 0.00 0.00 3.41
201 202 1.470098 GCACAAATGACGCTTGGATCT 59.530 47.619 0.00 0.00 0.00 2.75
202 203 2.730090 GCACAAATGACGCTTGGATCTG 60.730 50.000 0.00 0.00 0.00 2.90
204 205 2.086869 CAAATGACGCTTGGATCTGGT 58.913 47.619 0.00 0.00 0.00 4.00
205 206 1.742761 AATGACGCTTGGATCTGGTG 58.257 50.000 0.00 0.00 0.00 4.17
206 207 0.745845 ATGACGCTTGGATCTGGTGC 60.746 55.000 0.00 0.00 0.00 5.01
207 208 2.045926 ACGCTTGGATCTGGTGCC 60.046 61.111 0.00 0.00 0.00 5.01
208 209 2.046023 CGCTTGGATCTGGTGCCA 60.046 61.111 0.00 0.00 0.00 4.92
209 210 2.110967 CGCTTGGATCTGGTGCCAG 61.111 63.158 11.82 11.82 44.86 4.85
212 213 0.549950 CTTGGATCTGGTGCCAGGAT 59.450 55.000 17.23 9.87 43.75 3.24
213 214 0.548031 TTGGATCTGGTGCCAGGATC 59.452 55.000 17.23 16.36 43.75 3.36
214 215 1.070445 GGATCTGGTGCCAGGATCG 59.930 63.158 17.23 0.00 43.75 3.69
215 216 1.690219 GGATCTGGTGCCAGGATCGT 61.690 60.000 17.23 0.62 43.75 3.73
216 217 0.531532 GATCTGGTGCCAGGATCGTG 60.532 60.000 17.23 8.47 43.75 4.35
217 218 2.599645 ATCTGGTGCCAGGATCGTGC 62.600 60.000 17.23 6.42 43.75 5.34
218 219 4.408821 TGGTGCCAGGATCGTGCC 62.409 66.667 9.95 6.73 0.00 5.01
220 221 4.408821 GTGCCAGGATCGTGCCCA 62.409 66.667 9.95 6.42 0.00 5.36
241 242 4.899239 CCTCGCCGGATGAGGTGC 62.899 72.222 26.84 0.84 46.49 5.01
247 248 3.770040 CGGATGAGGTGCGGTCCA 61.770 66.667 0.00 0.00 38.09 4.02
248 249 2.911143 GGATGAGGTGCGGTCCAT 59.089 61.111 0.00 0.00 0.00 3.41
251 252 0.531532 GATGAGGTGCGGTCCATCTG 60.532 60.000 0.00 0.00 34.22 2.90
252 253 1.976132 ATGAGGTGCGGTCCATCTGG 61.976 60.000 0.00 0.00 34.22 3.86
253 254 4.101448 AGGTGCGGTCCATCTGGC 62.101 66.667 0.00 0.00 32.36 4.85
259 260 3.161450 GGTCCATCTGGCGCCCTA 61.161 66.667 26.77 12.83 34.44 3.53
261 262 1.523938 GTCCATCTGGCGCCCTAAC 60.524 63.158 26.77 9.81 34.44 2.34
262 263 2.203209 CCATCTGGCGCCCTAACC 60.203 66.667 26.77 0.00 0.00 2.85
264 265 3.489513 ATCTGGCGCCCTAACCCC 61.490 66.667 26.77 0.00 0.00 4.95
265 266 4.733725 TCTGGCGCCCTAACCCCT 62.734 66.667 26.77 0.00 0.00 4.79
267 268 3.995506 CTGGCGCCCTAACCCCTTG 62.996 68.421 26.77 0.00 0.00 3.61
268 269 4.815108 GGCGCCCTAACCCCTTGG 62.815 72.222 18.11 0.00 37.80 3.61
279 280 4.974721 CCCTTGGGTGGCACGCTT 62.975 66.667 30.89 0.00 39.78 4.68
280 281 3.673484 CCTTGGGTGGCACGCTTG 61.673 66.667 30.89 22.77 39.78 4.01
281 282 2.906897 CTTGGGTGGCACGCTTGT 60.907 61.111 30.89 0.00 39.78 3.16
282 283 2.904866 TTGGGTGGCACGCTTGTC 60.905 61.111 30.89 8.40 39.78 3.18
283 284 4.947147 TGGGTGGCACGCTTGTCC 62.947 66.667 30.89 17.14 39.78 4.02
319 320 3.017265 TCGAGTCGAAGTTAAACACCC 57.983 47.619 13.98 0.00 31.06 4.61
320 321 2.361757 TCGAGTCGAAGTTAAACACCCA 59.638 45.455 13.98 0.00 31.06 4.51
322 323 3.460103 GAGTCGAAGTTAAACACCCACA 58.540 45.455 0.00 0.00 0.00 4.17
323 324 4.062991 GAGTCGAAGTTAAACACCCACAT 58.937 43.478 0.00 0.00 0.00 3.21
324 325 3.813166 AGTCGAAGTTAAACACCCACATG 59.187 43.478 0.00 0.00 0.00 3.21
325 326 3.058501 GTCGAAGTTAAACACCCACATGG 60.059 47.826 0.00 0.00 41.37 3.66
347 348 3.535280 TTATGACCAATACGCTGCAGA 57.465 42.857 20.43 0.00 0.00 4.26
349 350 0.320050 TGACCAATACGCTGCAGACA 59.680 50.000 20.43 0.61 0.00 3.41
350 351 0.721718 GACCAATACGCTGCAGACAC 59.278 55.000 20.43 0.00 0.00 3.67
351 352 0.034756 ACCAATACGCTGCAGACACA 59.965 50.000 20.43 0.00 0.00 3.72
352 353 1.155889 CCAATACGCTGCAGACACAA 58.844 50.000 20.43 0.00 0.00 3.33
353 354 1.129251 CCAATACGCTGCAGACACAAG 59.871 52.381 20.43 2.08 0.00 3.16
355 356 0.321671 ATACGCTGCAGACACAAGGT 59.678 50.000 20.43 5.25 0.00 3.50
367 368 2.045438 CAAGGTGTGCCCGCCATA 60.045 61.111 0.44 0.00 44.14 2.74
369 370 2.901281 AAGGTGTGCCCGCCATACA 61.901 57.895 0.44 0.00 44.14 2.29
370 371 2.360600 GGTGTGCCCGCCATACAA 60.361 61.111 0.00 0.00 41.16 2.41
380 381 4.713946 CCATACAAGGCACGTGGT 57.286 55.556 18.88 9.06 43.51 4.16
381 382 2.170738 CCATACAAGGCACGTGGTG 58.829 57.895 18.88 0.00 43.51 4.17
396 397 3.857854 GTGCATCAGCCGCGACAG 61.858 66.667 8.23 0.00 41.13 3.51
433 434 2.432628 GGAGGCGGAGTCACAACG 60.433 66.667 0.00 0.00 0.00 4.10
434 435 2.432628 GAGGCGGAGTCACAACGG 60.433 66.667 0.00 0.00 0.00 4.44
435 436 3.934391 GAGGCGGAGTCACAACGGG 62.934 68.421 0.00 0.00 0.00 5.28
458 459 3.047877 GGCACCCCTTTGTCGTCG 61.048 66.667 0.00 0.00 0.00 5.12
459 460 3.723348 GCACCCCTTTGTCGTCGC 61.723 66.667 0.00 0.00 0.00 5.19
461 462 1.890041 CACCCCTTTGTCGTCGCAA 60.890 57.895 0.00 0.00 0.00 4.85
462 463 1.890510 ACCCCTTTGTCGTCGCAAC 60.891 57.895 2.27 0.00 0.00 4.17
463 464 2.613506 CCCCTTTGTCGTCGCAACC 61.614 63.158 2.27 0.00 0.00 3.77
467 468 1.484227 CTTTGTCGTCGCAACCACGA 61.484 55.000 0.00 0.00 43.85 4.35
468 469 1.484227 TTTGTCGTCGCAACCACGAG 61.484 55.000 0.00 0.00 46.52 4.18
469 470 3.103911 GTCGTCGCAACCACGAGG 61.104 66.667 0.00 0.00 46.52 4.63
472 473 2.028484 GTCGCAACCACGAGGACA 59.972 61.111 5.68 0.00 43.89 4.02
473 474 1.593209 GTCGCAACCACGAGGACAA 60.593 57.895 5.68 0.00 43.89 3.18
474 475 1.593209 TCGCAACCACGAGGACAAC 60.593 57.895 5.68 0.00 37.09 3.32
475 476 1.594293 CGCAACCACGAGGACAACT 60.594 57.895 5.68 0.00 38.69 3.16
477 478 0.531974 GCAACCACGAGGACAACTCA 60.532 55.000 5.68 0.00 46.98 3.41
478 479 1.878102 GCAACCACGAGGACAACTCAT 60.878 52.381 5.68 0.00 46.98 2.90
479 480 1.800586 CAACCACGAGGACAACTCATG 59.199 52.381 5.68 0.00 46.98 3.07
480 481 0.320771 ACCACGAGGACAACTCATGC 60.321 55.000 5.68 0.00 46.98 4.06
481 482 0.320683 CCACGAGGACAACTCATGCA 60.321 55.000 0.00 0.00 46.98 3.96
484 485 1.002430 ACGAGGACAACTCATGCATGT 59.998 47.619 25.43 8.19 46.98 3.21
485 486 1.662629 CGAGGACAACTCATGCATGTC 59.337 52.381 25.43 16.70 46.98 3.06
489 490 3.687572 GACAACTCATGCATGTCCATC 57.312 47.619 25.43 14.02 37.97 3.51
490 491 3.011818 GACAACTCATGCATGTCCATCA 58.988 45.455 25.43 4.97 37.97 3.07
491 492 3.628008 ACAACTCATGCATGTCCATCAT 58.372 40.909 25.43 4.90 37.22 2.45
492 493 3.630769 ACAACTCATGCATGTCCATCATC 59.369 43.478 25.43 0.00 34.09 2.92
494 495 2.103601 ACTCATGCATGTCCATCATCGA 59.896 45.455 25.43 1.98 34.09 3.59
495 496 3.244457 ACTCATGCATGTCCATCATCGAT 60.244 43.478 25.43 0.00 34.09 3.59
496 497 3.332034 TCATGCATGTCCATCATCGATC 58.668 45.455 25.43 0.00 34.09 3.69
497 498 3.007614 TCATGCATGTCCATCATCGATCT 59.992 43.478 25.43 0.00 34.09 2.75
498 499 3.036075 TGCATGTCCATCATCGATCTC 57.964 47.619 0.00 0.00 34.09 2.75
499 500 2.366266 TGCATGTCCATCATCGATCTCA 59.634 45.455 0.00 0.00 34.09 3.27
500 501 2.735663 GCATGTCCATCATCGATCTCAC 59.264 50.000 0.00 0.00 34.09 3.51
510 511 0.656259 TCGATCTCACGTCGATGTCC 59.344 55.000 7.47 0.00 42.57 4.02
511 512 0.377203 CGATCTCACGTCGATGTCCA 59.623 55.000 7.47 0.00 41.40 4.02
515 516 2.212900 CTCACGTCGATGTCCAGGCA 62.213 60.000 7.47 0.00 0.00 4.75
516 517 1.374125 CACGTCGATGTCCAGGCAA 60.374 57.895 7.47 0.00 0.00 4.52
517 518 1.374252 ACGTCGATGTCCAGGCAAC 60.374 57.895 3.92 0.00 0.00 4.17
519 520 2.100631 GTCGATGTCCAGGCAACGG 61.101 63.158 11.65 0.00 46.39 4.44
535 536 3.285371 GGGCTCCGACGAGAAAGA 58.715 61.111 0.00 0.00 38.52 2.52
536 537 1.139947 GGGCTCCGACGAGAAAGAG 59.860 63.158 0.00 0.00 38.52 2.85
537 538 1.596895 GGGCTCCGACGAGAAAGAGT 61.597 60.000 0.00 0.00 38.52 3.24
540 541 2.478200 GGCTCCGACGAGAAAGAGTAAG 60.478 54.545 0.00 0.00 38.52 2.34
543 544 1.201647 CCGACGAGAAAGAGTAAGGCA 59.798 52.381 0.00 0.00 0.00 4.75
544 545 2.159226 CCGACGAGAAAGAGTAAGGCAT 60.159 50.000 0.00 0.00 0.00 4.40
545 546 2.854777 CGACGAGAAAGAGTAAGGCATG 59.145 50.000 0.00 0.00 0.00 4.06
547 548 2.093447 ACGAGAAAGAGTAAGGCATGGG 60.093 50.000 0.00 0.00 0.00 4.00
549 550 3.739519 CGAGAAAGAGTAAGGCATGGGAG 60.740 52.174 0.00 0.00 0.00 4.30
551 552 3.198853 AGAAAGAGTAAGGCATGGGAGAC 59.801 47.826 0.00 0.00 0.00 3.36
572 573 3.845259 GGCGCCTCGTGTCCCATA 61.845 66.667 22.15 0.00 0.00 2.74
610 612 0.396417 ATGTCCTGCTCTACCTCGCT 60.396 55.000 0.00 0.00 0.00 4.93
613 615 2.105930 CTGCTCTACCTCGCTGGC 59.894 66.667 0.00 0.00 40.22 4.85
635 637 1.780309 ACCAAACATGGGGAACAGAGA 59.220 47.619 7.25 0.00 0.00 3.10
647 649 3.181454 GGGAACAGAGAGAACAACAAGGA 60.181 47.826 0.00 0.00 0.00 3.36
650 652 2.693591 ACAGAGAGAACAACAAGGACGA 59.306 45.455 0.00 0.00 0.00 4.20
654 656 1.390463 GAGAACAACAAGGACGATCGC 59.610 52.381 16.60 8.04 0.00 4.58
657 659 2.125673 AACAAGGACGATCGCCGG 60.126 61.111 16.60 16.06 43.93 6.13
663 665 2.719979 GACGATCGCCGGCTAAGA 59.280 61.111 26.68 15.44 44.62 2.10
664 666 1.286260 GACGATCGCCGGCTAAGAT 59.714 57.895 26.68 19.88 44.62 2.40
668 670 2.223876 ACGATCGCCGGCTAAGATTTAA 60.224 45.455 26.68 0.00 43.93 1.52
688 690 9.601971 GATTTAAACTAGTTTTACGTTGCATGA 57.398 29.630 25.07 0.70 34.23 3.07
703 705 8.578308 ACGTTGCATGAAATTATATGGATTTG 57.422 30.769 0.00 0.00 0.00 2.32
745 747 6.650120 ACTCCTTGTACAATGGAATATTCGT 58.350 36.000 20.31 13.81 0.00 3.85
748 750 6.984474 TCCTTGTACAATGGAATATTCGTCTC 59.016 38.462 18.66 0.00 0.00 3.36
753 755 8.204160 TGTACAATGGAATATTCGTCTCTTCAT 58.796 33.333 9.32 2.85 0.00 2.57
757 759 3.675698 GGAATATTCGTCTCTTCATCGGC 59.324 47.826 9.32 0.00 0.00 5.54
762 764 0.108615 CGTCTCTTCATCGGCCACTT 60.109 55.000 2.24 0.00 0.00 3.16
768 770 4.081142 TCTCTTCATCGGCCACTTTTCATA 60.081 41.667 2.24 0.00 0.00 2.15
771 773 5.652014 TCTTCATCGGCCACTTTTCATAAAT 59.348 36.000 2.24 0.00 0.00 1.40
777 779 5.650266 TCGGCCACTTTTCATAAATACACAT 59.350 36.000 2.24 0.00 0.00 3.21
778 780 5.743398 CGGCCACTTTTCATAAATACACATG 59.257 40.000 2.24 0.00 0.00 3.21
779 781 6.404184 CGGCCACTTTTCATAAATACACATGA 60.404 38.462 2.24 0.00 0.00 3.07
780 782 7.319646 GGCCACTTTTCATAAATACACATGAA 58.680 34.615 0.00 0.00 38.93 2.57
781 783 7.275560 GGCCACTTTTCATAAATACACATGAAC 59.724 37.037 0.00 0.00 40.06 3.18
782 784 7.008266 GCCACTTTTCATAAATACACATGAACG 59.992 37.037 0.00 0.00 40.06 3.95
785 787 9.959749 ACTTTTCATAAATACACATGAACGTTT 57.040 25.926 0.46 0.00 40.06 3.60
792 794 0.165944 CACATGAACGTTTCGAGGCC 59.834 55.000 0.46 0.00 0.00 5.19
793 795 1.289109 ACATGAACGTTTCGAGGCCG 61.289 55.000 0.46 0.00 37.07 6.13
794 796 1.740296 ATGAACGTTTCGAGGCCGG 60.740 57.895 0.46 0.00 36.24 6.13
801 803 0.456142 GTTTCGAGGCCGGATTTTGC 60.456 55.000 5.05 0.00 36.24 3.68
820 822 4.720649 TGCTAGGTCCGATTATAGATGC 57.279 45.455 0.00 0.00 0.00 3.91
829 831 3.370366 CCGATTATAGATGCTCTTGCTGC 59.630 47.826 0.00 0.00 40.48 5.25
830 832 3.992427 CGATTATAGATGCTCTTGCTGCA 59.008 43.478 0.00 0.00 44.95 4.41
832 834 4.677673 TTATAGATGCTCTTGCTGCAGA 57.322 40.909 20.43 0.00 44.04 4.26
833 835 2.306341 TAGATGCTCTTGCTGCAGAC 57.694 50.000 20.43 9.67 44.04 3.51
836 838 1.306642 ATGCTCTTGCTGCAGACTGC 61.307 55.000 20.43 20.86 44.04 4.40
856 858 1.528586 CGGAGGCGCAGAATATTTCAG 59.471 52.381 10.83 0.00 0.00 3.02
862 864 4.702131 AGGCGCAGAATATTTCAGACTTTT 59.298 37.500 10.83 0.00 0.00 2.27
906 914 3.333969 GCATACTCGCCGAGCAGC 61.334 66.667 15.20 11.97 32.04 5.25
917 925 2.895680 GAGCAGCAGGATCGGTGA 59.104 61.111 4.26 0.00 36.48 4.02
918 926 1.445095 GAGCAGCAGGATCGGTGAT 59.555 57.895 4.26 0.00 36.48 3.06
919 927 0.879400 GAGCAGCAGGATCGGTGATG 60.879 60.000 7.41 7.41 36.48 3.07
920 928 1.153289 GCAGCAGGATCGGTGATGT 60.153 57.895 12.07 0.00 36.48 3.06
922 930 0.873312 CAGCAGGATCGGTGATGTCG 60.873 60.000 4.26 0.00 36.48 4.35
923 931 2.240500 GCAGGATCGGTGATGTCGC 61.241 63.158 0.00 0.00 0.00 5.19
1439 1470 7.070074 CCACTATTCACTCCTCTGTATTTAGGT 59.930 40.741 0.00 0.00 34.30 3.08
1453 1484 2.004583 TTAGGTTGTGAGATTCGGCG 57.995 50.000 0.00 0.00 0.00 6.46
1471 1502 1.418342 CGTTGCGTTACCTCCGATGG 61.418 60.000 0.00 0.00 0.00 3.51
1537 1583 3.194719 GCACTCCCATGCAAGCTC 58.805 61.111 0.00 0.00 45.39 4.09
1636 1704 4.542662 ATCAATACAGCAGCAATCGAAC 57.457 40.909 0.00 0.00 0.00 3.95
1637 1705 2.348362 TCAATACAGCAGCAATCGAACG 59.652 45.455 0.00 0.00 0.00 3.95
1640 1708 0.319900 ACAGCAGCAATCGAACGACT 60.320 50.000 0.00 0.00 0.00 4.18
1643 1711 1.993370 AGCAGCAATCGAACGACTAAC 59.007 47.619 0.00 0.00 0.00 2.34
1644 1712 1.724623 GCAGCAATCGAACGACTAACA 59.275 47.619 0.00 0.00 0.00 2.41
1645 1713 2.472397 GCAGCAATCGAACGACTAACAC 60.472 50.000 0.00 0.00 0.00 3.32
1646 1714 2.987149 CAGCAATCGAACGACTAACACT 59.013 45.455 0.00 0.00 0.00 3.55
1648 1716 4.056050 AGCAATCGAACGACTAACACTTT 58.944 39.130 0.00 0.00 0.00 2.66
1649 1717 4.510340 AGCAATCGAACGACTAACACTTTT 59.490 37.500 0.00 0.00 0.00 2.27
1652 1720 6.415702 CAATCGAACGACTAACACTTTTTCA 58.584 36.000 0.00 0.00 0.00 2.69
1654 1722 6.406093 TCGAACGACTAACACTTTTTCAAA 57.594 33.333 0.00 0.00 0.00 2.69
1741 2478 9.581289 TTTTCTTTTGAATTCAGGATAGTACCA 57.419 29.630 8.41 0.00 38.37 3.25
1953 2690 3.476552 TGAGCCAGTACAGAAACCAAAG 58.523 45.455 0.00 0.00 0.00 2.77
1985 2724 2.226437 GCAACACAACAACATCCTCGAT 59.774 45.455 0.00 0.00 0.00 3.59
2127 2866 4.281182 TCTTCCTTACTCTCTGGTTGTGTC 59.719 45.833 0.00 0.00 0.00 3.67
2631 3370 3.508012 AGTTTCTCTATCAGTGTGTCGCT 59.492 43.478 0.00 0.00 0.00 4.93
2849 3590 8.798402 ACCTACTATCCATTATTTCTTCTCGAG 58.202 37.037 5.93 5.93 0.00 4.04
2930 3685 5.061721 TCTTAGTTCTTTCCAGCCCTTTT 57.938 39.130 0.00 0.00 0.00 2.27
2933 3688 1.618837 GTTCTTTCCAGCCCTTTTCCC 59.381 52.381 0.00 0.00 0.00 3.97
3257 4024 4.694982 CCCTTTTGCTGTGAAAGTTTGTTT 59.305 37.500 0.00 0.00 33.33 2.83
3258 4025 5.390779 CCCTTTTGCTGTGAAAGTTTGTTTG 60.391 40.000 0.00 0.00 33.33 2.93
3283 4050 5.371526 ACAAGCATATGAGTGTCCTATTGG 58.628 41.667 6.97 0.00 0.00 3.16
3318 4086 6.183360 GCCCGTGAATGCAAAATTCAAAATAT 60.183 34.615 2.87 0.00 39.43 1.28
3343 4113 6.185852 TGTCTGCTGTTACATGATTGATTG 57.814 37.500 0.00 0.00 0.00 2.67
3362 4187 6.292150 TGATTGCGGGTGTTAATGTGATATA 58.708 36.000 0.00 0.00 0.00 0.86
3363 4188 5.994887 TTGCGGGTGTTAATGTGATATAC 57.005 39.130 0.00 0.00 0.00 1.47
3429 4268 5.640147 TCAACTTCAATATGGAAACTGGGT 58.360 37.500 0.00 0.00 0.00 4.51
3618 4471 2.113139 ACAAGGAACACAGGCCGG 59.887 61.111 0.00 0.00 0.00 6.13
3684 4537 2.005606 TTGTTCTCCTTGGGCTGGCA 62.006 55.000 2.88 0.00 0.00 4.92
3693 4546 2.203266 GGGCTGGCAGGACTATGC 60.203 66.667 17.64 0.00 45.74 3.14
3705 4558 1.278238 GACTATGCGTCAAACTCCGG 58.722 55.000 0.00 0.00 42.37 5.14
3765 4618 2.970639 GACGCACCAGAGCTACCA 59.029 61.111 0.00 0.00 0.00 3.25
3946 4801 0.179081 GAAAGATTAGCCGCCGGTCT 60.179 55.000 4.45 5.06 0.00 3.85
3959 4814 2.476352 CGCCGGTCTGATGTCTATATCG 60.476 54.545 1.90 0.00 0.00 2.92
4000 4855 8.110860 TCTTGTGTCTTTCTTGAAGAGTTTTT 57.889 30.769 0.00 0.00 44.78 1.94
4037 4893 4.487714 TTTGGATAGATTTCGCTGAGGT 57.512 40.909 0.00 0.00 0.00 3.85
4066 4922 6.856938 CACTAGAGAATGTAATACGCTGGTAC 59.143 42.308 0.00 0.00 0.00 3.34
4142 4998 4.157656 TGAATGCAGTATTTTAGTGGCACC 59.842 41.667 15.27 0.00 0.00 5.01
4163 5019 4.689345 ACCGTTCTGTACTTGTTTATGCTC 59.311 41.667 0.00 0.00 0.00 4.26
4169 5025 2.403252 ACTTGTTTATGCTCCCTCCG 57.597 50.000 0.00 0.00 0.00 4.63
4170 5026 1.628846 ACTTGTTTATGCTCCCTCCGT 59.371 47.619 0.00 0.00 0.00 4.69
4171 5027 2.280628 CTTGTTTATGCTCCCTCCGTC 58.719 52.381 0.00 0.00 0.00 4.79
4179 5035 0.035458 GCTCCCTCCGTCCCATAATG 59.965 60.000 0.00 0.00 0.00 1.90
4193 5049 5.118510 GTCCCATAATGCAAGAACGTTTTTG 59.881 40.000 23.24 23.24 0.00 2.44
4200 5056 4.654015 TGCAAGAACGTTTTTGACACTAC 58.346 39.130 29.53 14.35 0.00 2.73
4202 5058 5.581479 TGCAAGAACGTTTTTGACACTACTA 59.419 36.000 29.53 6.56 0.00 1.82
4203 5059 5.900242 GCAAGAACGTTTTTGACACTACTAC 59.100 40.000 29.53 9.32 0.00 2.73
4204 5060 6.238022 GCAAGAACGTTTTTGACACTACTACT 60.238 38.462 29.53 3.39 0.00 2.57
4205 5061 7.675637 GCAAGAACGTTTTTGACACTACTACTT 60.676 37.037 29.53 9.08 0.00 2.24
4206 5062 8.810427 CAAGAACGTTTTTGACACTACTACTTA 58.190 33.333 23.19 0.00 0.00 2.24
4207 5063 9.538508 AAGAACGTTTTTGACACTACTACTTAT 57.461 29.630 0.46 0.00 0.00 1.73
4216 5072 8.978874 TTGACACTACTACTTATATTACGGGA 57.021 34.615 0.00 0.00 0.00 5.14
4217 5073 8.383318 TGACACTACTACTTATATTACGGGAC 57.617 38.462 0.00 0.00 0.00 4.46
4233 5089 3.679824 GGGACGGAGGGAGTAATATTG 57.320 52.381 0.00 0.00 0.00 1.90
4235 5091 2.367567 GGACGGAGGGAGTAATATTGCA 59.632 50.000 6.31 0.00 0.00 4.08
4421 5283 8.677300 ACATCGAACTGAAGTGCATAAATAAAT 58.323 29.630 0.00 0.00 0.00 1.40
4466 5328 7.618019 ATGCCTCTTAACCTAGACATCATAA 57.382 36.000 0.00 0.00 0.00 1.90
4647 5512 2.584064 TGCGATGCACCGGAGATT 59.416 55.556 9.46 0.00 31.71 2.40
4648 5513 1.078497 TGCGATGCACCGGAGATTT 60.078 52.632 9.46 0.00 31.71 2.17
4650 5515 0.451783 GCGATGCACCGGAGATTTTT 59.548 50.000 9.46 0.00 0.00 1.94
4682 5564 2.292257 TGAGTGTGGACCCTATGCTACT 60.292 50.000 0.00 0.00 0.00 2.57
4697 5579 5.815233 ATGCTACTGCCATTGACTATAGT 57.185 39.130 4.68 4.68 38.71 2.12
4712 5605 4.689062 ACTATAGTGGTAGCCCATATGCT 58.311 43.478 4.10 0.00 44.35 3.79
4781 5674 2.542824 CCAATCGTGCCAAACTTCGTTT 60.543 45.455 0.00 0.00 36.05 3.60
4882 5810 2.038329 AGGTACGGGCTGCACCTA 59.962 61.111 16.88 0.00 42.91 3.08
5000 5932 1.545651 GGTAGTATTCCCATGGCTGGC 60.546 57.143 6.09 0.00 41.64 4.85
5105 6037 1.592669 AGTCCACGCGCATATGCTC 60.593 57.895 24.56 16.58 39.32 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.514824 GCCATGCCGGAGAAGACC 60.515 66.667 5.05 0.00 36.56 3.85
5 6 2.892425 CGCCATGCCGGAGAAGAC 60.892 66.667 5.05 0.00 36.49 3.01
17 18 2.203538 GGATCCATTGCCCGCCAT 60.204 61.111 6.95 0.00 0.00 4.40
18 19 4.873810 CGGATCCATTGCCCGCCA 62.874 66.667 13.41 0.00 36.62 5.69
20 21 3.279875 GTCGGATCCATTGCCCGC 61.280 66.667 13.41 0.00 42.70 6.13
21 22 1.153168 AAGTCGGATCCATTGCCCG 60.153 57.895 13.41 0.00 44.22 6.13
23 24 1.672881 CTTGAAGTCGGATCCATTGCC 59.327 52.381 13.41 0.00 0.00 4.52
27 28 3.323403 GGAGATCTTGAAGTCGGATCCAT 59.677 47.826 13.41 0.00 37.24 3.41
28 29 2.695666 GGAGATCTTGAAGTCGGATCCA 59.304 50.000 13.41 0.00 37.24 3.41
29 30 2.962421 AGGAGATCTTGAAGTCGGATCC 59.038 50.000 0.00 0.00 37.24 3.36
30 31 3.634448 TCAGGAGATCTTGAAGTCGGATC 59.366 47.826 0.00 0.00 36.92 3.36
31 32 3.636679 TCAGGAGATCTTGAAGTCGGAT 58.363 45.455 0.00 0.00 0.00 4.18
32 33 3.087370 TCAGGAGATCTTGAAGTCGGA 57.913 47.619 0.00 0.00 0.00 4.55
44 45 2.770802 CCCAGTCAACAGATCAGGAGAT 59.229 50.000 0.00 0.00 37.13 2.75
45 46 2.182827 CCCAGTCAACAGATCAGGAGA 58.817 52.381 0.00 0.00 0.00 3.71
47 48 1.902508 GTCCCAGTCAACAGATCAGGA 59.097 52.381 0.00 0.00 0.00 3.86
48 49 1.065854 GGTCCCAGTCAACAGATCAGG 60.066 57.143 0.00 0.00 0.00 3.86
49 50 1.905215 AGGTCCCAGTCAACAGATCAG 59.095 52.381 0.00 0.00 0.00 2.90
50 51 1.902508 GAGGTCCCAGTCAACAGATCA 59.097 52.381 0.00 0.00 0.00 2.92
52 53 2.030027 TGAGGTCCCAGTCAACAGAT 57.970 50.000 0.00 0.00 0.00 2.90
53 54 2.030027 ATGAGGTCCCAGTCAACAGA 57.970 50.000 0.00 0.00 0.00 3.41
54 55 2.616510 GGAATGAGGTCCCAGTCAACAG 60.617 54.545 9.17 0.00 33.27 3.16
57 58 1.741028 TGGAATGAGGTCCCAGTCAA 58.259 50.000 9.17 0.00 36.80 3.18
71 72 0.620410 TCCTCGTCCCCACATGGAAT 60.620 55.000 0.00 0.00 35.80 3.01
72 73 1.229368 TCCTCGTCCCCACATGGAA 60.229 57.895 0.00 0.00 35.80 3.53
73 74 1.685765 CTCCTCGTCCCCACATGGA 60.686 63.158 0.00 0.00 37.39 3.41
75 76 1.680522 CTCCTCCTCGTCCCCACATG 61.681 65.000 0.00 0.00 0.00 3.21
76 77 1.381872 CTCCTCCTCGTCCCCACAT 60.382 63.158 0.00 0.00 0.00 3.21
77 78 1.875422 ATCTCCTCCTCGTCCCCACA 61.875 60.000 0.00 0.00 0.00 4.17
79 80 1.075970 CATCTCCTCCTCGTCCCCA 60.076 63.158 0.00 0.00 0.00 4.96
80 81 1.834822 CCATCTCCTCCTCGTCCCC 60.835 68.421 0.00 0.00 0.00 4.81
81 82 2.503382 GCCATCTCCTCCTCGTCCC 61.503 68.421 0.00 0.00 0.00 4.46
82 83 2.503382 GGCCATCTCCTCCTCGTCC 61.503 68.421 0.00 0.00 0.00 4.79
83 84 2.851071 CGGCCATCTCCTCCTCGTC 61.851 68.421 2.24 0.00 0.00 4.20
84 85 2.835431 CGGCCATCTCCTCCTCGT 60.835 66.667 2.24 0.00 0.00 4.18
85 86 2.835431 ACGGCCATCTCCTCCTCG 60.835 66.667 2.24 0.00 0.00 4.63
87 88 2.444895 GGACGGCCATCTCCTCCT 60.445 66.667 0.00 0.00 0.00 3.69
88 89 2.764128 TGGACGGCCATCTCCTCC 60.764 66.667 5.41 0.00 39.92 4.30
99 100 0.173708 GTAGAGAGCCAAGTGGACGG 59.826 60.000 0.18 0.00 37.39 4.79
101 102 1.404851 GCAGTAGAGAGCCAAGTGGAC 60.405 57.143 0.18 0.00 37.39 4.02
102 103 0.898320 GCAGTAGAGAGCCAAGTGGA 59.102 55.000 0.18 0.00 37.39 4.02
103 104 0.901124 AGCAGTAGAGAGCCAAGTGG 59.099 55.000 0.00 0.00 38.53 4.00
105 106 1.190643 GGAGCAGTAGAGAGCCAAGT 58.809 55.000 0.00 0.00 0.00 3.16
106 107 0.463620 GGGAGCAGTAGAGAGCCAAG 59.536 60.000 0.00 0.00 0.00 3.61
107 108 1.323271 CGGGAGCAGTAGAGAGCCAA 61.323 60.000 0.00 0.00 0.00 4.52
108 109 1.754621 CGGGAGCAGTAGAGAGCCA 60.755 63.158 0.00 0.00 0.00 4.75
109 110 2.494530 CCGGGAGCAGTAGAGAGCC 61.495 68.421 0.00 0.00 0.00 4.70
112 113 1.076923 GTCCCGGGAGCAGTAGAGA 60.077 63.158 27.72 0.00 0.00 3.10
113 114 2.482333 CGTCCCGGGAGCAGTAGAG 61.482 68.421 27.72 4.07 0.00 2.43
114 115 2.439701 CGTCCCGGGAGCAGTAGA 60.440 66.667 27.72 0.00 0.00 2.59
116 117 2.439701 CTCGTCCCGGGAGCAGTA 60.440 66.667 27.72 6.72 0.00 2.74
117 118 4.680537 ACTCGTCCCGGGAGCAGT 62.681 66.667 27.72 25.12 34.87 4.40
118 119 4.135153 CACTCGTCCCGGGAGCAG 62.135 72.222 27.72 24.40 34.87 4.24
119 120 4.988716 ACACTCGTCCCGGGAGCA 62.989 66.667 27.72 12.85 34.87 4.26
120 121 4.436998 CACACTCGTCCCGGGAGC 62.437 72.222 27.72 17.99 34.87 4.70
121 122 4.436998 GCACACTCGTCCCGGGAG 62.437 72.222 27.72 18.40 37.54 4.30
127 128 2.202756 GATCGGGCACACTCGTCC 60.203 66.667 0.00 0.00 0.00 4.79
128 129 2.579787 CGATCGGGCACACTCGTC 60.580 66.667 7.38 0.00 0.00 4.20
129 130 4.129737 CCGATCGGGCACACTCGT 62.130 66.667 26.95 0.00 0.00 4.18
130 131 3.758088 CTCCGATCGGGCACACTCG 62.758 68.421 32.79 5.07 34.94 4.18
131 132 2.105128 CTCCGATCGGGCACACTC 59.895 66.667 32.79 0.00 34.94 3.51
132 133 0.968901 TAACTCCGATCGGGCACACT 60.969 55.000 32.79 14.37 34.94 3.55
133 134 0.527817 CTAACTCCGATCGGGCACAC 60.528 60.000 32.79 0.00 34.94 3.82
134 135 0.681887 TCTAACTCCGATCGGGCACA 60.682 55.000 32.79 13.65 34.94 4.57
136 137 0.395311 AGTCTAACTCCGATCGGGCA 60.395 55.000 32.79 14.81 34.94 5.36
137 138 0.311477 GAGTCTAACTCCGATCGGGC 59.689 60.000 32.79 8.84 39.28 6.13
138 139 1.874872 GAGAGTCTAACTCCGATCGGG 59.125 57.143 32.79 24.50 46.18 5.14
139 140 2.803956 GAGAGAGTCTAACTCCGATCGG 59.196 54.545 28.62 28.62 46.18 4.18
145 146 0.658897 CGCGGAGAGAGTCTAACTCC 59.341 60.000 15.12 15.12 46.18 3.85
147 148 0.748729 CCCGCGGAGAGAGTCTAACT 60.749 60.000 30.73 0.00 0.00 2.24
148 149 0.747283 TCCCGCGGAGAGAGTCTAAC 60.747 60.000 30.73 0.00 0.00 2.34
149 150 0.034767 TTCCCGCGGAGAGAGTCTAA 60.035 55.000 30.73 2.13 31.21 2.10
150 151 0.747283 GTTCCCGCGGAGAGAGTCTA 60.747 60.000 30.73 2.90 31.21 2.59
152 153 2.490685 GTTCCCGCGGAGAGAGTC 59.509 66.667 30.73 8.87 31.21 3.36
153 154 3.069318 GGTTCCCGCGGAGAGAGT 61.069 66.667 30.73 0.00 31.21 3.24
154 155 3.839432 GGGTTCCCGCGGAGAGAG 61.839 72.222 30.73 9.82 31.21 3.20
155 156 3.976490 ATGGGTTCCCGCGGAGAGA 62.976 63.158 30.73 13.45 31.21 3.10
159 160 3.642503 ACAATGGGTTCCCGCGGA 61.643 61.111 30.73 10.38 0.00 5.54
160 161 3.439540 CACAATGGGTTCCCGCGG 61.440 66.667 21.04 21.04 0.00 6.46
164 165 2.340328 GCGGACACAATGGGTTCCC 61.340 63.158 0.12 0.12 0.00 3.97
165 166 1.602323 TGCGGACACAATGGGTTCC 60.602 57.895 0.00 0.00 0.00 3.62
166 167 1.579429 GTGCGGACACAATGGGTTC 59.421 57.895 0.63 0.00 46.61 3.62
167 168 3.758172 GTGCGGACACAATGGGTT 58.242 55.556 0.63 0.00 46.61 4.11
176 177 1.163420 AAGCGTCATTTGTGCGGACA 61.163 50.000 5.33 5.33 0.00 4.02
177 178 0.725784 CAAGCGTCATTTGTGCGGAC 60.726 55.000 0.00 0.00 0.00 4.79
178 179 1.573932 CAAGCGTCATTTGTGCGGA 59.426 52.632 0.00 0.00 0.00 5.54
180 181 0.168788 ATCCAAGCGTCATTTGTGCG 59.831 50.000 0.00 0.00 0.00 5.34
183 184 2.086869 CCAGATCCAAGCGTCATTTGT 58.913 47.619 0.00 0.00 0.00 2.83
184 185 2.086869 ACCAGATCCAAGCGTCATTTG 58.913 47.619 0.00 0.00 0.00 2.32
185 186 2.086869 CACCAGATCCAAGCGTCATTT 58.913 47.619 0.00 0.00 0.00 2.32
186 187 1.742761 CACCAGATCCAAGCGTCATT 58.257 50.000 0.00 0.00 0.00 2.57
187 188 0.745845 GCACCAGATCCAAGCGTCAT 60.746 55.000 0.00 0.00 0.00 3.06
188 189 1.375908 GCACCAGATCCAAGCGTCA 60.376 57.895 0.00 0.00 0.00 4.35
190 191 2.045926 GGCACCAGATCCAAGCGT 60.046 61.111 0.00 0.00 0.00 5.07
192 193 1.751927 CCTGGCACCAGATCCAAGC 60.752 63.158 18.44 0.00 46.30 4.01
193 194 0.549950 ATCCTGGCACCAGATCCAAG 59.450 55.000 18.44 0.22 46.30 3.61
195 196 1.689243 CGATCCTGGCACCAGATCCA 61.689 60.000 18.44 0.00 46.30 3.41
196 197 1.070445 CGATCCTGGCACCAGATCC 59.930 63.158 18.44 5.36 46.30 3.36
197 198 0.531532 CACGATCCTGGCACCAGATC 60.532 60.000 18.44 15.85 46.30 2.75
198 199 1.524002 CACGATCCTGGCACCAGAT 59.476 57.895 18.44 9.42 46.30 2.90
199 200 2.981302 CACGATCCTGGCACCAGA 59.019 61.111 18.44 4.89 46.30 3.86
201 202 4.408821 GGCACGATCCTGGCACCA 62.409 66.667 12.38 0.00 36.71 4.17
204 205 4.408821 GTGGGCACGATCCTGGCA 62.409 66.667 17.64 4.13 38.47 4.92
229 230 4.530857 GGACCGCACCTCATCCGG 62.531 72.222 0.00 0.00 46.97 5.14
231 232 1.227674 GATGGACCGCACCTCATCC 60.228 63.158 0.00 0.00 32.27 3.51
232 233 0.531532 CAGATGGACCGCACCTCATC 60.532 60.000 0.00 0.00 37.02 2.92
233 234 1.524002 CAGATGGACCGCACCTCAT 59.476 57.895 0.00 0.00 0.00 2.90
234 235 2.659063 CCAGATGGACCGCACCTCA 61.659 63.158 0.00 0.00 37.39 3.86
235 236 2.187946 CCAGATGGACCGCACCTC 59.812 66.667 0.00 0.00 37.39 3.85
236 237 4.101448 GCCAGATGGACCGCACCT 62.101 66.667 2.18 0.00 37.39 4.00
243 244 1.523938 GTTAGGGCGCCAGATGGAC 60.524 63.158 30.85 13.41 37.39 4.02
244 245 2.742116 GGTTAGGGCGCCAGATGGA 61.742 63.158 30.85 4.26 37.39 3.41
247 248 3.489513 GGGGTTAGGGCGCCAGAT 61.490 66.667 30.85 16.22 40.69 2.90
248 249 4.733725 AGGGGTTAGGGCGCCAGA 62.734 66.667 30.85 12.83 43.08 3.86
251 252 4.815108 CCAAGGGGTTAGGGCGCC 62.815 72.222 21.18 21.18 41.23 6.53
252 253 4.815108 CCCAAGGGGTTAGGGCGC 62.815 72.222 0.00 0.00 38.25 6.53
262 263 4.974721 AAGCGTGCCACCCAAGGG 62.975 66.667 2.91 2.91 42.03 3.95
264 265 2.906897 ACAAGCGTGCCACCCAAG 60.907 61.111 0.00 0.00 0.00 3.61
265 266 2.904866 GACAAGCGTGCCACCCAA 60.905 61.111 0.00 0.00 0.00 4.12
288 289 4.415332 GACTCGAAGCCCGACGCA 62.415 66.667 0.00 0.00 43.23 5.24
290 291 3.318539 TTCGACTCGAAGCCCGACG 62.319 63.158 9.86 0.00 43.23 5.12
291 292 2.564975 TTCGACTCGAAGCCCGAC 59.435 61.111 9.86 0.00 43.23 4.79
299 300 2.361757 TGGGTGTTTAACTTCGACTCGA 59.638 45.455 0.00 0.00 0.00 4.04
301 302 3.460103 TGTGGGTGTTTAACTTCGACTC 58.540 45.455 0.00 0.00 0.00 3.36
302 303 3.547054 TGTGGGTGTTTAACTTCGACT 57.453 42.857 0.00 0.00 0.00 4.18
303 304 3.058501 CCATGTGGGTGTTTAACTTCGAC 60.059 47.826 0.00 0.00 0.00 4.20
304 305 3.142951 CCATGTGGGTGTTTAACTTCGA 58.857 45.455 0.00 0.00 0.00 3.71
305 306 3.552604 CCATGTGGGTGTTTAACTTCG 57.447 47.619 0.00 0.00 0.00 3.79
325 326 3.621268 TCTGCAGCGTATTGGTCATAAAC 59.379 43.478 9.47 0.00 0.00 2.01
326 327 3.621268 GTCTGCAGCGTATTGGTCATAAA 59.379 43.478 9.47 0.00 0.00 1.40
327 328 3.194861 GTCTGCAGCGTATTGGTCATAA 58.805 45.455 9.47 0.00 0.00 1.90
328 329 2.167487 TGTCTGCAGCGTATTGGTCATA 59.833 45.455 9.47 0.00 0.00 2.15
329 330 1.066215 TGTCTGCAGCGTATTGGTCAT 60.066 47.619 9.47 0.00 0.00 3.06
331 332 0.721718 GTGTCTGCAGCGTATTGGTC 59.278 55.000 9.47 0.00 0.00 4.02
332 333 0.034756 TGTGTCTGCAGCGTATTGGT 59.965 50.000 9.47 0.00 0.00 3.67
333 334 1.129251 CTTGTGTCTGCAGCGTATTGG 59.871 52.381 9.47 0.00 0.00 3.16
334 335 1.129251 CCTTGTGTCTGCAGCGTATTG 59.871 52.381 9.47 0.00 0.00 1.90
335 336 1.270839 ACCTTGTGTCTGCAGCGTATT 60.271 47.619 9.47 0.00 0.00 1.89
336 337 0.321671 ACCTTGTGTCTGCAGCGTAT 59.678 50.000 9.47 0.00 0.00 3.06
338 339 1.889105 CACCTTGTGTCTGCAGCGT 60.889 57.895 9.47 0.00 0.00 5.07
339 340 1.889105 ACACCTTGTGTCTGCAGCG 60.889 57.895 9.47 0.00 43.92 5.18
340 341 1.650912 CACACCTTGTGTCTGCAGC 59.349 57.895 9.47 4.92 43.92 5.25
349 350 2.901281 TATGGCGGGCACACCTTGT 61.901 57.895 6.33 0.00 36.97 3.16
350 351 2.045438 TATGGCGGGCACACCTTG 60.045 61.111 6.33 0.00 36.97 3.61
351 352 2.045340 GTATGGCGGGCACACCTT 60.045 61.111 6.33 0.00 36.97 3.50
352 353 2.819984 CTTGTATGGCGGGCACACCT 62.820 60.000 10.63 0.00 36.97 4.00
353 354 2.360600 TTGTATGGCGGGCACACC 60.361 61.111 10.63 0.52 0.00 4.16
355 356 2.045438 CCTTGTATGGCGGGCACA 60.045 61.111 6.33 0.00 0.00 4.57
373 374 3.792047 CGGCTGATGCACCACGTG 61.792 66.667 9.08 9.08 41.91 4.49
416 417 2.432628 CGTTGTGACTCCGCCTCC 60.433 66.667 0.00 0.00 0.00 4.30
418 419 4.003788 CCCGTTGTGACTCCGCCT 62.004 66.667 0.00 0.00 0.00 5.52
441 442 3.047877 CGACGACAAAGGGGTGCC 61.048 66.667 0.00 0.00 0.00 5.01
445 446 2.613506 GGTTGCGACGACAAAGGGG 61.614 63.158 0.00 0.00 0.00 4.79
449 450 1.484227 CTCGTGGTTGCGACGACAAA 61.484 55.000 18.10 5.75 39.41 2.83
453 454 3.289062 TCCTCGTGGTTGCGACGA 61.289 61.111 0.00 6.26 41.72 4.20
456 457 1.593209 GTTGTCCTCGTGGTTGCGA 60.593 57.895 2.99 0.00 39.22 5.10
458 459 0.531974 TGAGTTGTCCTCGTGGTTGC 60.532 55.000 2.99 0.00 43.64 4.17
459 460 2.169832 ATGAGTTGTCCTCGTGGTTG 57.830 50.000 2.99 0.00 43.64 3.77
469 470 3.011818 TGATGGACATGCATGAGTTGTC 58.988 45.455 32.75 20.08 39.19 3.18
471 472 3.303791 CGATGATGGACATGCATGAGTTG 60.304 47.826 32.75 8.34 39.56 3.16
472 473 2.876550 CGATGATGGACATGCATGAGTT 59.123 45.455 32.75 11.11 39.56 3.01
473 474 2.103601 TCGATGATGGACATGCATGAGT 59.896 45.455 32.75 11.94 39.56 3.41
474 475 2.762745 TCGATGATGGACATGCATGAG 58.237 47.619 32.75 8.19 39.56 2.90
475 476 2.914695 TCGATGATGGACATGCATGA 57.085 45.000 32.75 11.53 39.56 3.07
477 478 3.007614 TGAGATCGATGATGGACATGCAT 59.992 43.478 0.54 0.00 39.56 3.96
478 479 2.366266 TGAGATCGATGATGGACATGCA 59.634 45.455 0.54 0.00 39.56 3.96
479 480 2.735663 GTGAGATCGATGATGGACATGC 59.264 50.000 0.54 0.00 39.56 4.06
480 481 2.985139 CGTGAGATCGATGATGGACATG 59.015 50.000 0.54 0.00 39.56 3.21
481 482 2.625314 ACGTGAGATCGATGATGGACAT 59.375 45.455 0.54 0.00 42.47 3.06
484 485 1.264288 CGACGTGAGATCGATGATGGA 59.736 52.381 0.54 0.00 42.25 3.41
485 486 1.264288 TCGACGTGAGATCGATGATGG 59.736 52.381 0.54 0.00 43.38 3.51
486 487 2.670401 TCGACGTGAGATCGATGATG 57.330 50.000 0.54 0.00 43.38 3.07
492 493 0.377203 TGGACATCGACGTGAGATCG 59.623 55.000 0.00 0.00 41.00 3.69
494 495 0.741326 CCTGGACATCGACGTGAGAT 59.259 55.000 0.00 0.00 0.00 2.75
495 496 1.934220 GCCTGGACATCGACGTGAGA 61.934 60.000 0.00 0.00 0.00 3.27
496 497 1.517257 GCCTGGACATCGACGTGAG 60.517 63.158 0.00 0.00 0.00 3.51
497 498 1.811645 TTGCCTGGACATCGACGTGA 61.812 55.000 0.00 0.00 0.00 4.35
498 499 1.374125 TTGCCTGGACATCGACGTG 60.374 57.895 0.00 0.00 0.00 4.49
499 500 1.374252 GTTGCCTGGACATCGACGT 60.374 57.895 0.00 0.00 0.00 4.34
500 501 2.444624 CGTTGCCTGGACATCGACG 61.445 63.158 12.93 6.59 35.31 5.12
506 507 4.329545 GAGCCCGTTGCCTGGACA 62.330 66.667 0.00 0.00 42.71 4.02
519 520 1.093159 TACTCTTTCTCGTCGGAGCC 58.907 55.000 0.00 0.00 40.26 4.70
520 521 2.478200 CCTTACTCTTTCTCGTCGGAGC 60.478 54.545 0.00 0.00 40.26 4.70
522 523 1.471684 GCCTTACTCTTTCTCGTCGGA 59.528 52.381 0.00 0.00 0.00 4.55
523 524 1.201647 TGCCTTACTCTTTCTCGTCGG 59.798 52.381 0.00 0.00 0.00 4.79
524 525 2.631418 TGCCTTACTCTTTCTCGTCG 57.369 50.000 0.00 0.00 0.00 5.12
525 526 3.190874 CCATGCCTTACTCTTTCTCGTC 58.809 50.000 0.00 0.00 0.00 4.20
526 527 2.093447 CCCATGCCTTACTCTTTCTCGT 60.093 50.000 0.00 0.00 0.00 4.18
529 530 3.198853 GTCTCCCATGCCTTACTCTTTCT 59.801 47.826 0.00 0.00 0.00 2.52
531 532 2.093447 CGTCTCCCATGCCTTACTCTTT 60.093 50.000 0.00 0.00 0.00 2.52
533 534 1.115467 CGTCTCCCATGCCTTACTCT 58.885 55.000 0.00 0.00 0.00 3.24
534 535 0.105039 CCGTCTCCCATGCCTTACTC 59.895 60.000 0.00 0.00 0.00 2.59
535 536 1.972660 GCCGTCTCCCATGCCTTACT 61.973 60.000 0.00 0.00 0.00 2.24
536 537 1.523938 GCCGTCTCCCATGCCTTAC 60.524 63.158 0.00 0.00 0.00 2.34
537 538 2.908015 GCCGTCTCCCATGCCTTA 59.092 61.111 0.00 0.00 0.00 2.69
572 573 3.081554 GGACACAGACTGGCCCAT 58.918 61.111 7.51 0.00 43.57 4.00
610 612 2.282816 CCCCATGTTTGGTCGCCA 60.283 61.111 0.00 0.00 41.91 5.69
613 615 0.881118 CTGTTCCCCATGTTTGGTCG 59.119 55.000 0.00 0.00 41.91 4.79
635 637 1.429463 GCGATCGTCCTTGTTGTTCT 58.571 50.000 17.81 0.00 0.00 3.01
647 649 0.104304 AAATCTTAGCCGGCGATCGT 59.896 50.000 23.20 5.39 37.11 3.73
650 652 3.805207 AGTTTAAATCTTAGCCGGCGAT 58.195 40.909 23.20 15.40 0.00 4.58
654 656 8.112449 CGTAAAACTAGTTTAAATCTTAGCCGG 58.888 37.037 20.83 0.00 33.44 6.13
663 665 9.953697 TTCATGCAACGTAAAACTAGTTTAAAT 57.046 25.926 20.83 8.62 33.44 1.40
664 666 9.784680 TTTCATGCAACGTAAAACTAGTTTAAA 57.215 25.926 20.83 9.89 33.44 1.52
720 722 7.788026 ACGAATATTCCATTGTACAAGGAGTA 58.212 34.615 21.22 20.93 32.11 2.59
729 731 7.595130 CGATGAAGAGACGAATATTCCATTGTA 59.405 37.037 9.87 0.00 0.00 2.41
738 740 2.628178 TGGCCGATGAAGAGACGAATAT 59.372 45.455 0.00 0.00 0.00 1.28
743 745 0.108615 AAGTGGCCGATGAAGAGACG 60.109 55.000 0.00 0.00 0.00 4.18
745 747 2.038426 TGAAAAGTGGCCGATGAAGAGA 59.962 45.455 0.00 0.00 0.00 3.10
748 750 4.963276 TTATGAAAAGTGGCCGATGAAG 57.037 40.909 0.00 0.00 0.00 3.02
753 755 5.004448 TGTGTATTTATGAAAAGTGGCCGA 58.996 37.500 0.00 0.00 0.00 5.54
757 759 8.020819 ACGTTCATGTGTATTTATGAAAAGTGG 58.979 33.333 0.00 0.00 42.86 4.00
762 764 8.496751 TCGAAACGTTCATGTGTATTTATGAAA 58.503 29.630 0.00 0.00 42.86 2.69
768 770 4.378046 GCCTCGAAACGTTCATGTGTATTT 60.378 41.667 0.00 0.00 0.00 1.40
771 773 2.063266 GCCTCGAAACGTTCATGTGTA 58.937 47.619 0.00 0.00 0.00 2.90
777 779 2.162338 ATCCGGCCTCGAAACGTTCA 62.162 55.000 0.00 0.00 39.00 3.18
778 780 1.017701 AATCCGGCCTCGAAACGTTC 61.018 55.000 0.00 0.00 39.00 3.95
779 781 0.604511 AAATCCGGCCTCGAAACGTT 60.605 50.000 0.00 0.00 39.00 3.99
780 782 0.604511 AAAATCCGGCCTCGAAACGT 60.605 50.000 0.00 0.00 39.00 3.99
781 783 0.179200 CAAAATCCGGCCTCGAAACG 60.179 55.000 0.00 0.00 39.00 3.60
782 784 0.456142 GCAAAATCCGGCCTCGAAAC 60.456 55.000 0.00 0.00 39.00 2.78
785 787 0.179084 CTAGCAAAATCCGGCCTCGA 60.179 55.000 0.00 0.00 39.00 4.04
786 788 1.160329 CCTAGCAAAATCCGGCCTCG 61.160 60.000 0.00 0.00 0.00 4.63
793 795 6.698380 TCTATAATCGGACCTAGCAAAATCC 58.302 40.000 0.00 0.00 0.00 3.01
794 796 7.201565 GCATCTATAATCGGACCTAGCAAAATC 60.202 40.741 0.00 0.00 0.00 2.17
820 822 2.389020 CCGCAGTCTGCAGCAAGAG 61.389 63.158 24.13 6.18 45.36 2.85
836 838 1.528586 CTGAAATATTCTGCGCCTCCG 59.471 52.381 4.18 0.00 37.57 4.63
837 839 2.545946 GTCTGAAATATTCTGCGCCTCC 59.454 50.000 4.18 0.00 0.00 4.30
856 858 2.556287 CGGCCGCACTCAAAAGTC 59.444 61.111 14.67 0.00 31.71 3.01
906 914 0.249615 ATGCGACATCACCGATCCTG 60.250 55.000 0.00 0.00 0.00 3.86
974 987 4.440940 GGCGTGGTGGAATAAAAATAAGGG 60.441 45.833 0.00 0.00 0.00 3.95
975 988 4.401202 AGGCGTGGTGGAATAAAAATAAGG 59.599 41.667 0.00 0.00 0.00 2.69
976 989 5.449999 GGAGGCGTGGTGGAATAAAAATAAG 60.450 44.000 0.00 0.00 0.00 1.73
1328 1354 2.730672 CGCACCAACTCTAGCGCAC 61.731 63.158 11.47 0.00 43.80 5.34
1439 1470 1.866237 GCAACGCCGAATCTCACAA 59.134 52.632 0.00 0.00 0.00 3.33
1453 1484 0.390735 ACCATCGGAGGTAACGCAAC 60.391 55.000 0.00 0.00 40.98 4.17
1471 1502 4.084328 GCACTACTGATGCGGAATTCATAC 60.084 45.833 7.93 0.00 32.45 2.39
1515 1546 0.809385 CTTGCATGGGAGTGCTTCAG 59.191 55.000 0.00 0.00 45.27 3.02
1537 1583 5.628193 CAGTGCTTTAAGCTGTCTGAAATTG 59.372 40.000 18.20 0.00 42.97 2.32
1601 1650 6.092670 TGCTGTATTGATTTAGCTGTCTGAAC 59.907 38.462 0.00 0.00 37.10 3.18
1659 1727 4.328983 CGCCTTGTATGTTAGTCGTTTGAT 59.671 41.667 0.00 0.00 0.00 2.57
1660 1728 3.676172 CGCCTTGTATGTTAGTCGTTTGA 59.324 43.478 0.00 0.00 0.00 2.69
1661 1729 3.676172 TCGCCTTGTATGTTAGTCGTTTG 59.324 43.478 0.00 0.00 0.00 2.93
1665 1733 3.444916 ACATCGCCTTGTATGTTAGTCG 58.555 45.455 0.00 0.00 32.43 4.18
1953 2690 2.100584 TGTTGTGTTGCCATCTTTGTCC 59.899 45.455 0.00 0.00 0.00 4.02
1985 2724 1.003580 GTGGATCCTGCAAGAAGTCCA 59.996 52.381 14.23 3.89 36.61 4.02
2631 3370 8.248945 GGTCTACAACTGATAGCACTAGTTTTA 58.751 37.037 0.00 0.00 32.69 1.52
2673 3412 7.814693 AAACTGTAGCCAGGGTATATCATAT 57.185 36.000 0.54 0.00 43.36 1.78
2674 3413 7.450074 CAAAACTGTAGCCAGGGTATATCATA 58.550 38.462 0.54 0.00 43.36 2.15
2849 3590 7.361286 GGAAGAATATCTTGGCGAATATTCCAC 60.361 40.741 9.87 3.76 36.73 4.02
2930 3685 4.021544 GTCACTTATGTGCAAAAATGGGGA 60.022 41.667 3.90 0.00 43.49 4.81
2933 3688 4.925054 CAGGTCACTTATGTGCAAAAATGG 59.075 41.667 3.90 0.00 43.49 3.16
3257 4024 4.558226 AGGACACTCATATGCTTGTTCA 57.442 40.909 14.13 0.00 0.00 3.18
3258 4025 6.017605 CCAATAGGACACTCATATGCTTGTTC 60.018 42.308 9.59 8.13 36.89 3.18
3283 4050 0.394352 ATTCACGGGCATGGGAAGTC 60.394 55.000 0.00 0.00 0.00 3.01
3318 4086 6.822667 ATCAATCATGTAACAGCAGACAAA 57.177 33.333 0.00 0.00 0.00 2.83
3343 4113 7.094631 TGATAGTATATCACATTAACACCCGC 58.905 38.462 0.00 0.00 0.00 6.13
3429 4268 4.158394 GCACTAAAATCAGAATGCCAAGGA 59.842 41.667 0.00 0.00 34.76 3.36
3618 4471 1.602377 GTAAGCCGCATTGGTATCACC 59.398 52.381 0.00 0.00 41.21 4.02
3693 4546 2.434359 GCCCTCCGGAGTTTGACG 60.434 66.667 29.25 13.06 0.00 4.35
3705 4558 4.760047 TCTTGCTTCCGCGCCCTC 62.760 66.667 0.00 0.00 39.65 4.30
3946 4801 7.803279 AATATAGGCGTCGATATAGACATCA 57.197 36.000 15.15 0.00 40.98 3.07
3959 4814 6.535508 AGACACAAGAGAAAAATATAGGCGTC 59.464 38.462 0.00 0.00 0.00 5.19
4005 4861 6.238103 CGAAATCTATCCAAAAAGCTAAGCGA 60.238 38.462 0.00 0.00 0.00 4.93
4007 4863 5.683302 GCGAAATCTATCCAAAAAGCTAAGC 59.317 40.000 0.00 0.00 0.00 3.09
4037 4893 5.593095 AGCGTATTACATTCTCTAGTGGTCA 59.407 40.000 0.00 0.00 0.00 4.02
4142 4998 4.092968 GGGAGCATAAACAAGTACAGAACG 59.907 45.833 0.00 0.00 0.00 3.95
4163 5019 0.182537 TTGCATTATGGGACGGAGGG 59.817 55.000 0.00 0.00 0.00 4.30
4169 5025 4.434713 AAACGTTCTTGCATTATGGGAC 57.565 40.909 0.00 0.00 0.00 4.46
4170 5026 5.010112 TCAAAAACGTTCTTGCATTATGGGA 59.990 36.000 9.52 0.00 0.00 4.37
4171 5027 5.118510 GTCAAAAACGTTCTTGCATTATGGG 59.881 40.000 9.52 0.00 0.00 4.00
4179 5035 4.905269 AGTAGTGTCAAAAACGTTCTTGC 58.095 39.130 9.52 5.78 0.00 4.01
4193 5049 7.360438 CCGTCCCGTAATATAAGTAGTAGTGTC 60.360 44.444 0.00 0.00 0.00 3.67
4200 5056 4.397417 CCCTCCGTCCCGTAATATAAGTAG 59.603 50.000 0.00 0.00 0.00 2.57
4202 5058 3.160269 CCCTCCGTCCCGTAATATAAGT 58.840 50.000 0.00 0.00 0.00 2.24
4203 5059 3.424703 TCCCTCCGTCCCGTAATATAAG 58.575 50.000 0.00 0.00 0.00 1.73
4204 5060 3.181429 ACTCCCTCCGTCCCGTAATATAA 60.181 47.826 0.00 0.00 0.00 0.98
4205 5061 2.376518 ACTCCCTCCGTCCCGTAATATA 59.623 50.000 0.00 0.00 0.00 0.86
4206 5062 1.146566 ACTCCCTCCGTCCCGTAATAT 59.853 52.381 0.00 0.00 0.00 1.28
4207 5063 0.552848 ACTCCCTCCGTCCCGTAATA 59.447 55.000 0.00 0.00 0.00 0.98
4208 5064 0.552848 TACTCCCTCCGTCCCGTAAT 59.447 55.000 0.00 0.00 0.00 1.89
4210 5066 0.552848 ATTACTCCCTCCGTCCCGTA 59.447 55.000 0.00 0.00 0.00 4.02
4211 5067 0.552848 TATTACTCCCTCCGTCCCGT 59.447 55.000 0.00 0.00 0.00 5.28
4212 5068 1.920610 ATATTACTCCCTCCGTCCCG 58.079 55.000 0.00 0.00 0.00 5.14
4213 5069 2.289506 GCAATATTACTCCCTCCGTCCC 60.290 54.545 0.00 0.00 0.00 4.46
4214 5070 2.367567 TGCAATATTACTCCCTCCGTCC 59.632 50.000 0.00 0.00 0.00 4.79
4215 5071 3.746045 TGCAATATTACTCCCTCCGTC 57.254 47.619 0.00 0.00 0.00 4.79
4216 5072 4.706842 AATGCAATATTACTCCCTCCGT 57.293 40.909 0.00 0.00 0.00 4.69
4217 5073 6.391227 AAAAATGCAATATTACTCCCTCCG 57.609 37.500 0.00 0.00 0.00 4.63
4404 5266 8.970020 ACCATCTCAATTTATTTATGCACTTCA 58.030 29.630 0.00 0.00 0.00 3.02
4405 5267 9.807649 AACCATCTCAATTTATTTATGCACTTC 57.192 29.630 0.00 0.00 0.00 3.01
4421 5283 9.326489 AGGCATATAGTCTATTAACCATCTCAA 57.674 33.333 0.00 0.00 0.00 3.02
4651 5516 2.158579 GGTCCACACTCACCCCTAAAAA 60.159 50.000 0.00 0.00 0.00 1.94
4652 5517 1.422402 GGTCCACACTCACCCCTAAAA 59.578 52.381 0.00 0.00 0.00 1.52
4653 5518 1.061546 GGTCCACACTCACCCCTAAA 58.938 55.000 0.00 0.00 0.00 1.85
4654 5519 0.838987 GGGTCCACACTCACCCCTAA 60.839 60.000 0.00 0.00 46.13 2.69
4655 5520 1.229400 GGGTCCACACTCACCCCTA 60.229 63.158 0.00 0.00 46.13 3.53
4656 5521 2.529389 GGGTCCACACTCACCCCT 60.529 66.667 0.00 0.00 46.13 4.79
4682 5564 3.071023 GGCTACCACTATAGTCAATGGCA 59.929 47.826 1.26 0.00 35.49 4.92
4712 5605 1.000521 ATCCTCGGACCGGTACACA 60.001 57.895 19.15 0.65 0.00 3.72
4882 5810 3.000819 TTCGGCCCATGAGACGGT 61.001 61.111 1.41 0.00 0.00 4.83
5105 6037 1.361668 CGTGGAAATGGGACGCTCTG 61.362 60.000 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.