Multiple sequence alignment - TraesCS1D01G417600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G417600 chr1D 100.000 7187 0 0 2687 9873 475729577 475722391 0.000000e+00 13272.0
1 TraesCS1D01G417600 chr1D 100.000 1883 0 0 1 1883 475732263 475730381 0.000000e+00 3478.0
2 TraesCS1D01G417600 chr1D 91.626 203 17 0 2687 2889 475729541 475729339 2.100000e-71 281.0
3 TraesCS1D01G417600 chr1D 91.626 203 17 0 2723 2925 475729577 475729375 2.100000e-71 281.0
4 TraesCS1D01G417600 chr1D 88.546 227 23 3 1619 1845 475730606 475730383 1.260000e-68 272.0
5 TraesCS1D01G417600 chr1D 88.546 227 23 3 1658 1881 475730645 475730419 1.260000e-68 272.0
6 TraesCS1D01G417600 chr1D 86.792 159 21 0 1723 1881 475729577 475729419 2.830000e-40 178.0
7 TraesCS1D01G417600 chr1D 86.792 159 21 0 2687 2845 475730541 475730383 2.830000e-40 178.0
8 TraesCS1D01G417600 chr1B 98.074 3479 49 4 2795 6271 661640110 661636648 0.000000e+00 6037.0
9 TraesCS1D01G417600 chr1B 96.411 1393 20 3 7277 8645 661635542 661634156 0.000000e+00 2268.0
10 TraesCS1D01G417600 chr1B 95.156 1156 29 6 8642 9785 661634053 661632913 0.000000e+00 1799.0
11 TraesCS1D01G417600 chr1B 98.137 1020 18 1 6260 7279 661636591 661635573 0.000000e+00 1777.0
12 TraesCS1D01G417600 chr1B 84.893 1635 126 56 286 1881 661642086 661640534 0.000000e+00 1539.0
13 TraesCS1D01G417600 chr1B 86.026 229 25 6 1658 1881 661640796 661640570 1.280000e-58 239.0
14 TraesCS1D01G417600 chr1B 84.483 232 31 4 2687 2914 661640767 661640537 3.590000e-54 224.0
15 TraesCS1D01G417600 chr1B 86.316 190 19 6 2730 2914 661640796 661640609 6.050000e-47 200.0
16 TraesCS1D01G417600 chr1B 76.190 378 31 27 286 642 661654076 661653737 2.870000e-30 145.0
17 TraesCS1D01G417600 chr1A 94.819 2297 68 22 4323 6595 571585635 571583366 0.000000e+00 3535.0
18 TraesCS1D01G417600 chr1A 95.677 1573 55 7 2726 4296 571587193 571585632 0.000000e+00 2516.0
19 TraesCS1D01G417600 chr1A 96.193 972 32 4 7351 8320 571582138 571581170 0.000000e+00 1585.0
20 TraesCS1D01G417600 chr1A 84.293 1407 143 39 8336 9698 571581064 571579692 0.000000e+00 1303.0
21 TraesCS1D01G417600 chr1A 92.614 677 31 8 6593 7267 571583109 571582450 0.000000e+00 955.0
22 TraesCS1D01G417600 chr1A 85.238 989 70 26 564 1521 571588837 571587894 0.000000e+00 948.0
23 TraesCS1D01G417600 chr1A 89.717 389 37 1 1493 1881 571587859 571587474 2.480000e-135 494.0
24 TraesCS1D01G417600 chr1A 90.909 231 18 3 1619 1849 571587697 571587470 3.460000e-79 307.0
25 TraesCS1D01G417600 chr1A 92.308 195 12 3 1619 1813 571587661 571587470 3.510000e-69 274.0
26 TraesCS1D01G417600 chr1A 93.293 164 11 0 2762 2925 571587193 571587030 9.910000e-60 243.0
27 TraesCS1D01G417600 chr1A 88.442 199 23 0 2687 2885 571587668 571587470 3.560000e-59 241.0
28 TraesCS1D01G417600 chr1A 87.568 185 23 0 1633 1817 571587178 571586994 2.160000e-51 215.0
29 TraesCS1D01G417600 chr1A 89.308 159 14 3 1619 1777 571587625 571587470 7.820000e-46 196.0
30 TraesCS1D01G417600 chr1A 87.117 163 21 0 2687 2849 571587632 571587470 1.690000e-42 185.0
31 TraesCS1D01G417600 chr1A 91.270 126 11 0 2800 2925 571587191 571587066 1.320000e-38 172.0
32 TraesCS1D01G417600 chr1A 95.745 47 1 1 467 513 571589268 571589223 3.820000e-09 75.0
33 TraesCS1D01G417600 chr1A 88.710 62 4 2 389 450 571589321 571589263 1.380000e-08 73.1
34 TraesCS1D01G417600 chr3A 78.660 403 47 20 678 1064 46424907 46425286 2.140000e-56 231.0
35 TraesCS1D01G417600 chr4D 78.186 408 52 17 675 1067 283851570 283851185 9.980000e-55 226.0
36 TraesCS1D01G417600 chrUn 82.511 223 22 6 678 898 208393110 208392903 7.880000e-41 180.0
37 TraesCS1D01G417600 chr5B 76.293 232 30 19 4155 4376 705076271 705076055 6.310000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G417600 chr1D 475722391 475732263 9872 True 2276.500000 13272 91.741000 1 9873 8 chr1D.!!$R1 9872
1 TraesCS1D01G417600 chr1B 661632913 661642086 9173 True 1760.375000 6037 91.187000 286 9785 8 chr1B.!!$R2 9499
2 TraesCS1D01G417600 chr1A 571579692 571589321 9629 True 783.358824 3535 90.777706 389 9698 17 chr1A.!!$R1 9309

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.184211 CCGGGTTGGGGTTATTAGGG 59.816 60.000 0.00 0.0 0.00 3.53 F
438 454 0.247974 GATAAAGCAGCAGCAGCACG 60.248 55.000 12.92 0.0 45.49 5.34 F
544 574 0.249398 CCTTGCGCCCAACTAGTAGT 59.751 55.000 4.18 0.0 0.00 2.73 F
1067 1466 0.308993 GATGTGCAGATTAAGGGCGC 59.691 55.000 0.00 0.0 38.47 6.53 F
1780 2347 0.319040 GCCGAATCAGAGCGAGCATA 60.319 55.000 0.00 0.0 0.00 3.14 F
1829 2396 0.529555 GAGCAGCATCTCCCGTCTTC 60.530 60.000 0.00 0.0 0.00 2.87 F
1846 2413 0.737367 TTCACGGCAGAATCAGAGCG 60.737 55.000 0.00 0.0 0.00 5.03 F
1848 2415 1.140589 ACGGCAGAATCAGAGCGAG 59.859 57.895 0.00 0.0 0.00 5.03 F
1851 2418 1.152989 GGCAGAATCAGAGCGAGCAG 61.153 60.000 0.00 0.0 0.00 4.24 F
3259 4264 0.942252 GGGAACTAATTAAGCCCGCG 59.058 55.000 0.00 0.0 0.00 6.46 F
3699 4704 2.002586 CGTCGGAGGTCGTTCTAAGTA 58.997 52.381 0.00 0.0 40.32 2.24 F
4818 5824 1.128188 AAAGGAAGAGCTCCCACGGT 61.128 55.000 10.93 0.0 46.81 4.83 F
6169 7177 3.002759 GCATACTTCCTTCCTTCATTCGC 59.997 47.826 0.00 0.0 0.00 4.70 F
6242 7252 4.184629 GAGGCTTATATGCGTATCTTGGG 58.815 47.826 0.55 0.0 0.00 4.12 F
7553 9142 0.675633 GCAACAGTCACCATGCCTTT 59.324 50.000 0.00 0.0 32.73 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1057 1456 0.181350 CTCTCCTTGGCGCCCTTAAT 59.819 55.000 26.77 0.00 0.00 1.40 R
1780 2347 0.321653 GGCCGTGAAGACAGGACATT 60.322 55.000 0.00 0.00 34.32 2.71 R
1834 2401 0.459759 TGCTGCTCGCTCTGATTCTG 60.460 55.000 0.00 0.00 40.11 3.02 R
2718 3285 0.108615 ACTCTGATTCGGCCGTGAAG 60.109 55.000 27.15 17.96 0.00 3.02 R
2719 3286 0.389817 CACTCTGATTCGGCCGTGAA 60.390 55.000 27.15 14.07 0.00 3.18 R
2734 3301 0.390860 ACGGGATATGCAGCTCACTC 59.609 55.000 0.00 0.00 0.00 3.51 R
2763 3330 0.875040 ATGCTGCTCGCTCTGATTCG 60.875 55.000 0.00 0.00 40.11 3.34 R
3074 4079 0.898320 ACTTGGATCTCCTCGTGTGG 59.102 55.000 0.00 0.00 36.82 4.17 R
3699 4704 2.158813 CCACCATAGTAAGGTTCGCCAT 60.159 50.000 0.00 0.00 37.23 4.40 R
4656 5662 4.023193 GCTTTTGGTCGAGAAAAAGGATCA 60.023 41.667 23.71 0.00 41.56 2.92 R
5684 6692 1.741706 CCATTCATAGCATCGGCATCC 59.258 52.381 0.00 0.00 44.61 3.51 R
6462 7559 4.872691 CGAAGCTCACTGATTCAACCTTAT 59.127 41.667 0.00 0.00 40.79 1.73 R
7258 8616 3.979501 ATTCTGCATCCCTAAACCCAT 57.020 42.857 0.00 0.00 0.00 4.00 R
7979 9570 5.419788 TCAGTAAGCCGTTTATACCTTCTCA 59.580 40.000 0.00 0.00 0.00 3.27 R
8951 10781 0.110010 GCAAGGAAGAACGCTTGAGC 60.110 55.000 0.00 0.00 33.61 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.177537 TGATGAAACCCCTTGACTTTGA 57.822 40.909 0.00 0.00 0.00 2.69
22 23 3.888930 TGATGAAACCCCTTGACTTTGAC 59.111 43.478 0.00 0.00 0.00 3.18
23 24 3.374042 TGAAACCCCTTGACTTTGACA 57.626 42.857 0.00 0.00 0.00 3.58
24 25 3.909732 TGAAACCCCTTGACTTTGACAT 58.090 40.909 0.00 0.00 0.00 3.06
25 26 4.285863 TGAAACCCCTTGACTTTGACATT 58.714 39.130 0.00 0.00 0.00 2.71
26 27 4.099266 TGAAACCCCTTGACTTTGACATTG 59.901 41.667 0.00 0.00 0.00 2.82
27 28 3.593442 ACCCCTTGACTTTGACATTGA 57.407 42.857 0.00 0.00 0.00 2.57
28 29 3.222603 ACCCCTTGACTTTGACATTGAC 58.777 45.455 0.00 0.00 0.00 3.18
29 30 3.221771 CCCCTTGACTTTGACATTGACA 58.778 45.455 0.00 0.00 0.00 3.58
30 31 3.828451 CCCCTTGACTTTGACATTGACAT 59.172 43.478 0.00 0.00 0.00 3.06
31 32 4.281688 CCCCTTGACTTTGACATTGACATT 59.718 41.667 0.00 0.00 0.00 2.71
32 33 5.464168 CCCTTGACTTTGACATTGACATTC 58.536 41.667 0.00 0.00 0.00 2.67
33 34 5.009911 CCCTTGACTTTGACATTGACATTCA 59.990 40.000 0.00 0.00 0.00 2.57
34 35 5.916883 CCTTGACTTTGACATTGACATTCAC 59.083 40.000 0.00 0.00 0.00 3.18
35 36 6.238842 CCTTGACTTTGACATTGACATTCACT 60.239 38.462 0.00 0.00 0.00 3.41
36 37 6.304356 TGACTTTGACATTGACATTCACTC 57.696 37.500 0.00 0.00 0.00 3.51
37 38 5.821995 TGACTTTGACATTGACATTCACTCA 59.178 36.000 0.00 0.00 0.00 3.41
38 39 6.318396 TGACTTTGACATTGACATTCACTCAA 59.682 34.615 0.00 0.00 32.24 3.02
39 40 7.099266 ACTTTGACATTGACATTCACTCAAA 57.901 32.000 0.00 0.00 31.48 2.69
40 41 7.198390 ACTTTGACATTGACATTCACTCAAAG 58.802 34.615 18.24 18.24 41.96 2.77
41 42 5.112220 TGACATTGACATTCACTCAAAGC 57.888 39.130 0.00 0.00 31.48 3.51
42 43 4.022935 TGACATTGACATTCACTCAAAGCC 60.023 41.667 0.00 0.00 31.48 4.35
43 44 4.147321 ACATTGACATTCACTCAAAGCCT 58.853 39.130 0.00 0.00 31.48 4.58
44 45 4.022589 ACATTGACATTCACTCAAAGCCTG 60.023 41.667 0.00 0.00 31.48 4.85
45 46 1.881973 TGACATTCACTCAAAGCCTGC 59.118 47.619 0.00 0.00 0.00 4.85
46 47 1.200948 GACATTCACTCAAAGCCTGCC 59.799 52.381 0.00 0.00 0.00 4.85
47 48 0.529378 CATTCACTCAAAGCCTGCCC 59.471 55.000 0.00 0.00 0.00 5.36
48 49 0.962356 ATTCACTCAAAGCCTGCCCG 60.962 55.000 0.00 0.00 0.00 6.13
49 50 3.741476 CACTCAAAGCCTGCCCGC 61.741 66.667 0.00 0.00 0.00 6.13
50 51 4.269523 ACTCAAAGCCTGCCCGCA 62.270 61.111 0.00 0.00 0.00 5.69
51 52 3.437795 CTCAAAGCCTGCCCGCAG 61.438 66.667 9.80 9.80 43.26 5.18
52 53 3.907260 CTCAAAGCCTGCCCGCAGA 62.907 63.158 18.19 0.00 46.30 4.26
53 54 2.985282 CAAAGCCTGCCCGCAGAA 60.985 61.111 18.19 0.00 46.30 3.02
54 55 2.203480 AAAGCCTGCCCGCAGAAA 60.203 55.556 18.19 0.00 46.30 2.52
55 56 1.832167 AAAGCCTGCCCGCAGAAAA 60.832 52.632 18.19 0.00 46.30 2.29
56 57 1.398958 AAAGCCTGCCCGCAGAAAAA 61.399 50.000 18.19 0.00 46.30 1.94
79 80 5.409643 AAAAGAGACATTCACACAAGTCG 57.590 39.130 0.00 0.00 36.18 4.18
80 81 4.322080 AAGAGACATTCACACAAGTCGA 57.678 40.909 0.00 0.00 36.18 4.20
81 82 4.322080 AGAGACATTCACACAAGTCGAA 57.678 40.909 0.00 0.00 36.18 3.71
82 83 4.302455 AGAGACATTCACACAAGTCGAAG 58.698 43.478 0.00 0.00 36.18 3.79
83 84 4.051922 GAGACATTCACACAAGTCGAAGT 58.948 43.478 0.00 0.00 36.18 3.01
84 85 3.804325 AGACATTCACACAAGTCGAAGTG 59.196 43.478 11.12 11.12 41.40 3.16
86 87 3.938963 ACATTCACACAAGTCGAAGTGTT 59.061 39.130 14.60 1.65 46.04 3.32
87 88 4.394920 ACATTCACACAAGTCGAAGTGTTT 59.605 37.500 14.60 0.54 46.04 2.83
88 89 4.335082 TTCACACAAGTCGAAGTGTTTG 57.665 40.909 14.60 11.61 46.04 2.93
89 90 3.591023 TCACACAAGTCGAAGTGTTTGA 58.409 40.909 14.60 13.38 46.04 2.69
90 91 3.369756 TCACACAAGTCGAAGTGTTTGAC 59.630 43.478 14.60 0.00 46.04 3.18
100 101 7.001695 GTCGAAGTGTTTGACTTTTTCTACT 57.998 36.000 0.00 0.00 45.48 2.57
101 102 8.123445 GTCGAAGTGTTTGACTTTTTCTACTA 57.877 34.615 0.00 0.00 45.48 1.82
102 103 8.267367 GTCGAAGTGTTTGACTTTTTCTACTAG 58.733 37.037 0.00 0.00 45.48 2.57
103 104 7.977853 TCGAAGTGTTTGACTTTTTCTACTAGT 59.022 33.333 0.00 0.00 45.48 2.57
104 105 8.267367 CGAAGTGTTTGACTTTTTCTACTAGTC 58.733 37.037 0.00 0.00 45.48 2.59
105 106 9.315525 GAAGTGTTTGACTTTTTCTACTAGTCT 57.684 33.333 0.00 0.00 45.48 3.24
106 107 8.874744 AGTGTTTGACTTTTTCTACTAGTCTC 57.125 34.615 0.00 0.00 39.18 3.36
107 108 7.648510 AGTGTTTGACTTTTTCTACTAGTCTCG 59.351 37.037 0.00 0.00 39.18 4.04
108 109 7.434602 GTGTTTGACTTTTTCTACTAGTCTCGT 59.565 37.037 0.00 0.00 39.18 4.18
109 110 7.977853 TGTTTGACTTTTTCTACTAGTCTCGTT 59.022 33.333 0.00 0.00 39.18 3.85
110 111 7.925703 TTGACTTTTTCTACTAGTCTCGTTG 57.074 36.000 0.00 0.00 39.18 4.10
111 112 7.268199 TGACTTTTTCTACTAGTCTCGTTGA 57.732 36.000 0.00 0.00 39.18 3.18
112 113 7.361127 TGACTTTTTCTACTAGTCTCGTTGAG 58.639 38.462 0.00 0.00 39.18 3.02
113 114 7.228108 TGACTTTTTCTACTAGTCTCGTTGAGA 59.772 37.037 0.00 0.00 39.18 3.27
114 115 7.938715 ACTTTTTCTACTAGTCTCGTTGAGAA 58.061 34.615 0.00 0.00 40.59 2.87
115 116 8.411683 ACTTTTTCTACTAGTCTCGTTGAGAAA 58.588 33.333 0.00 4.63 40.59 2.52
116 117 8.571461 TTTTTCTACTAGTCTCGTTGAGAAAC 57.429 34.615 12.22 0.00 40.59 2.78
117 118 5.527511 TCTACTAGTCTCGTTGAGAAACG 57.472 43.478 0.00 4.68 46.65 3.60
118 119 3.555917 ACTAGTCTCGTTGAGAAACGG 57.444 47.619 10.72 2.90 45.45 4.44
119 120 3.144506 ACTAGTCTCGTTGAGAAACGGA 58.855 45.455 10.72 4.98 45.45 4.69
120 121 2.418983 AGTCTCGTTGAGAAACGGAC 57.581 50.000 17.28 17.28 45.45 4.79
121 122 1.955080 AGTCTCGTTGAGAAACGGACT 59.045 47.619 19.82 19.82 44.16 3.85
122 123 2.030981 AGTCTCGTTGAGAAACGGACTC 60.031 50.000 19.82 0.00 44.91 3.36
123 124 1.951602 TCTCGTTGAGAAACGGACTCA 59.048 47.619 10.72 0.00 45.45 3.41
124 125 2.557056 TCTCGTTGAGAAACGGACTCAT 59.443 45.455 10.72 0.00 45.45 2.90
125 126 2.917971 CTCGTTGAGAAACGGACTCATC 59.082 50.000 10.72 7.61 45.45 2.92
126 127 2.557056 TCGTTGAGAAACGGACTCATCT 59.443 45.455 10.72 0.00 45.45 2.90
127 128 2.917971 CGTTGAGAAACGGACTCATCTC 59.082 50.000 3.15 0.00 42.68 2.75
128 129 2.917971 GTTGAGAAACGGACTCATCTCG 59.082 50.000 8.71 0.00 42.68 4.04
129 130 1.135373 TGAGAAACGGACTCATCTCGC 60.135 52.381 0.00 0.00 40.91 5.03
130 131 1.133407 GAGAAACGGACTCATCTCGCT 59.867 52.381 0.00 0.00 34.87 4.93
131 132 2.355132 GAGAAACGGACTCATCTCGCTA 59.645 50.000 0.00 0.00 34.87 4.26
132 133 2.952978 AGAAACGGACTCATCTCGCTAT 59.047 45.455 0.00 0.00 0.00 2.97
133 134 3.381908 AGAAACGGACTCATCTCGCTATT 59.618 43.478 0.00 0.00 0.00 1.73
134 135 3.802948 AACGGACTCATCTCGCTATTT 57.197 42.857 0.00 0.00 0.00 1.40
135 136 3.085443 ACGGACTCATCTCGCTATTTG 57.915 47.619 0.00 0.00 0.00 2.32
136 137 2.427453 ACGGACTCATCTCGCTATTTGT 59.573 45.455 0.00 0.00 0.00 2.83
137 138 3.046390 CGGACTCATCTCGCTATTTGTC 58.954 50.000 0.00 0.00 0.00 3.18
138 139 3.385577 GGACTCATCTCGCTATTTGTCC 58.614 50.000 0.00 0.00 36.42 4.02
139 140 3.046390 GACTCATCTCGCTATTTGTCCG 58.954 50.000 0.00 0.00 0.00 4.79
140 141 2.223829 ACTCATCTCGCTATTTGTCCGG 60.224 50.000 0.00 0.00 0.00 5.14
141 142 1.068588 TCATCTCGCTATTTGTCCGGG 59.931 52.381 0.00 0.00 0.00 5.73
142 143 1.120530 ATCTCGCTATTTGTCCGGGT 58.879 50.000 0.00 0.00 0.00 5.28
143 144 0.899720 TCTCGCTATTTGTCCGGGTT 59.100 50.000 0.00 0.00 0.00 4.11
144 145 1.006832 CTCGCTATTTGTCCGGGTTG 58.993 55.000 0.00 0.00 0.00 3.77
145 146 0.391927 TCGCTATTTGTCCGGGTTGG 60.392 55.000 0.00 0.00 40.09 3.77
146 147 1.373590 CGCTATTTGTCCGGGTTGGG 61.374 60.000 0.00 0.00 38.76 4.12
147 148 1.035385 GCTATTTGTCCGGGTTGGGG 61.035 60.000 0.00 0.00 38.76 4.96
148 149 0.330267 CTATTTGTCCGGGTTGGGGT 59.670 55.000 0.00 0.00 38.76 4.95
149 150 0.778720 TATTTGTCCGGGTTGGGGTT 59.221 50.000 0.00 0.00 38.76 4.11
150 151 0.778720 ATTTGTCCGGGTTGGGGTTA 59.221 50.000 0.00 0.00 38.76 2.85
151 152 0.778720 TTTGTCCGGGTTGGGGTTAT 59.221 50.000 0.00 0.00 38.76 1.89
152 153 0.778720 TTGTCCGGGTTGGGGTTATT 59.221 50.000 0.00 0.00 38.76 1.40
153 154 1.666365 TGTCCGGGTTGGGGTTATTA 58.334 50.000 0.00 0.00 38.76 0.98
154 155 1.560611 TGTCCGGGTTGGGGTTATTAG 59.439 52.381 0.00 0.00 38.76 1.73
155 156 1.134007 GTCCGGGTTGGGGTTATTAGG 60.134 57.143 0.00 0.00 38.76 2.69
156 157 0.184211 CCGGGTTGGGGTTATTAGGG 59.816 60.000 0.00 0.00 0.00 3.53
157 158 1.215140 CGGGTTGGGGTTATTAGGGA 58.785 55.000 0.00 0.00 0.00 4.20
158 159 1.565288 CGGGTTGGGGTTATTAGGGAA 59.435 52.381 0.00 0.00 0.00 3.97
159 160 2.025131 CGGGTTGGGGTTATTAGGGAAA 60.025 50.000 0.00 0.00 0.00 3.13
160 161 3.638860 GGGTTGGGGTTATTAGGGAAAG 58.361 50.000 0.00 0.00 0.00 2.62
161 162 3.270169 GGGTTGGGGTTATTAGGGAAAGA 59.730 47.826 0.00 0.00 0.00 2.52
162 163 4.264487 GGGTTGGGGTTATTAGGGAAAGAA 60.264 45.833 0.00 0.00 0.00 2.52
163 164 4.954202 GGTTGGGGTTATTAGGGAAAGAAG 59.046 45.833 0.00 0.00 0.00 2.85
164 165 5.281349 GGTTGGGGTTATTAGGGAAAGAAGA 60.281 44.000 0.00 0.00 0.00 2.87
165 166 6.250711 GTTGGGGTTATTAGGGAAAGAAGAA 58.749 40.000 0.00 0.00 0.00 2.52
166 167 6.471942 TGGGGTTATTAGGGAAAGAAGAAA 57.528 37.500 0.00 0.00 0.00 2.52
167 168 6.865520 TGGGGTTATTAGGGAAAGAAGAAAA 58.134 36.000 0.00 0.00 0.00 2.29
168 169 7.306781 TGGGGTTATTAGGGAAAGAAGAAAAA 58.693 34.615 0.00 0.00 0.00 1.94
209 210 3.827784 CACGCACGCTACGCTGAC 61.828 66.667 0.00 0.00 0.00 3.51
210 211 4.039357 ACGCACGCTACGCTGACT 62.039 61.111 0.00 0.00 0.00 3.41
211 212 3.241059 CGCACGCTACGCTGACTC 61.241 66.667 0.00 0.00 0.00 3.36
212 213 2.179517 GCACGCTACGCTGACTCT 59.820 61.111 0.00 0.00 0.00 3.24
213 214 1.444553 GCACGCTACGCTGACTCTT 60.445 57.895 0.00 0.00 0.00 2.85
214 215 1.678269 GCACGCTACGCTGACTCTTG 61.678 60.000 0.00 0.00 0.00 3.02
215 216 1.073216 CACGCTACGCTGACTCTTGG 61.073 60.000 0.00 0.00 0.00 3.61
216 217 1.213013 CGCTACGCTGACTCTTGGT 59.787 57.895 0.00 0.00 0.00 3.67
217 218 0.798771 CGCTACGCTGACTCTTGGTC 60.799 60.000 0.00 0.00 44.70 4.02
238 239 4.796231 CCGCCCGACTCGACCAAG 62.796 72.222 0.00 0.00 0.00 3.61
240 241 4.373116 GCCCGACTCGACCAAGCA 62.373 66.667 0.00 0.00 0.00 3.91
241 242 2.342279 CCCGACTCGACCAAGCAA 59.658 61.111 0.00 0.00 0.00 3.91
242 243 1.738099 CCCGACTCGACCAAGCAAG 60.738 63.158 0.00 0.00 0.00 4.01
243 244 2.383527 CCGACTCGACCAAGCAAGC 61.384 63.158 0.00 0.00 0.00 4.01
244 245 2.720758 CGACTCGACCAAGCAAGCG 61.721 63.158 0.00 0.00 0.00 4.68
245 246 1.372997 GACTCGACCAAGCAAGCGA 60.373 57.895 0.00 0.00 0.00 4.93
246 247 3.468007 CTCGACCAAGCAAGCGAG 58.532 61.111 0.00 0.00 43.25 5.03
247 248 2.734673 CTCGACCAAGCAAGCGAGC 61.735 63.158 0.00 0.00 42.82 5.03
248 249 4.139420 CGACCAAGCAAGCGAGCG 62.139 66.667 0.00 0.00 40.15 5.03
249 250 2.738521 GACCAAGCAAGCGAGCGA 60.739 61.111 0.00 0.00 40.15 4.93
250 251 2.734673 GACCAAGCAAGCGAGCGAG 61.735 63.158 0.00 0.00 40.15 5.03
251 252 4.157958 CCAAGCAAGCGAGCGAGC 62.158 66.667 6.67 6.67 40.15 5.03
252 253 4.495939 CAAGCAAGCGAGCGAGCG 62.496 66.667 8.58 0.00 43.00 5.03
253 254 4.724602 AAGCAAGCGAGCGAGCGA 62.725 61.111 1.41 0.00 43.00 4.93
264 265 4.785512 CGAGCGAGCGAGGCAAGT 62.786 66.667 0.00 0.00 0.00 3.16
265 266 2.433318 GAGCGAGCGAGGCAAGTT 60.433 61.111 0.00 0.00 0.00 2.66
266 267 2.734673 GAGCGAGCGAGGCAAGTTG 61.735 63.158 0.00 0.00 0.00 3.16
267 268 3.793144 GCGAGCGAGGCAAGTTGG 61.793 66.667 4.75 0.00 0.00 3.77
268 269 3.121030 CGAGCGAGGCAAGTTGGG 61.121 66.667 4.75 0.00 0.00 4.12
269 270 3.435186 GAGCGAGGCAAGTTGGGC 61.435 66.667 4.75 0.00 0.00 5.36
270 271 4.269523 AGCGAGGCAAGTTGGGCA 62.270 61.111 4.75 0.00 35.46 5.36
271 272 3.741476 GCGAGGCAAGTTGGGCAG 61.741 66.667 4.75 0.00 35.46 4.85
272 273 2.032528 CGAGGCAAGTTGGGCAGA 59.967 61.111 4.75 0.00 35.46 4.26
273 274 2.037136 CGAGGCAAGTTGGGCAGAG 61.037 63.158 4.75 0.00 35.46 3.35
274 275 2.282745 AGGCAAGTTGGGCAGAGC 60.283 61.111 4.75 0.00 35.46 4.09
275 276 2.598394 GGCAAGTTGGGCAGAGCA 60.598 61.111 4.75 0.00 0.00 4.26
276 277 2.633509 GGCAAGTTGGGCAGAGCAG 61.634 63.158 4.75 0.00 0.00 4.24
277 278 2.633509 GCAAGTTGGGCAGAGCAGG 61.634 63.158 4.75 0.00 0.00 4.85
278 279 2.282745 AAGTTGGGCAGAGCAGGC 60.283 61.111 0.00 0.00 0.00 4.85
374 384 2.742372 CGACCCCAAAGGCGTGAG 60.742 66.667 0.00 0.00 40.58 3.51
375 385 2.359975 GACCCCAAAGGCGTGAGG 60.360 66.667 0.00 0.00 40.58 3.86
413 429 0.838987 ACAAGTGGGTACGGTGGGAT 60.839 55.000 0.00 0.00 0.00 3.85
418 434 1.996748 GGGTACGGTGGGATGGGAA 60.997 63.158 0.00 0.00 0.00 3.97
437 453 1.093159 AGATAAAGCAGCAGCAGCAC 58.907 50.000 12.92 0.00 45.49 4.40
438 454 0.247974 GATAAAGCAGCAGCAGCACG 60.248 55.000 12.92 0.00 45.49 5.34
439 455 2.262471 ATAAAGCAGCAGCAGCACGC 62.262 55.000 12.92 5.59 45.49 5.34
448 478 4.847255 GCAGCACGCGATTTTCTT 57.153 50.000 15.93 0.00 0.00 2.52
455 485 3.251004 AGCACGCGATTTTCTTTCTTTCT 59.749 39.130 15.93 0.00 0.00 2.52
460 490 5.008712 ACGCGATTTTCTTTCTTTCTTTCCT 59.991 36.000 15.93 0.00 0.00 3.36
462 492 6.129352 CGCGATTTTCTTTCTTTCTTTCCTTG 60.129 38.462 0.00 0.00 0.00 3.61
463 493 6.346120 GCGATTTTCTTTCTTTCTTTCCTTGC 60.346 38.462 0.00 0.00 0.00 4.01
464 494 6.697019 CGATTTTCTTTCTTTCTTTCCTTGCA 59.303 34.615 0.00 0.00 0.00 4.08
465 495 7.222611 CGATTTTCTTTCTTTCTTTCCTTGCAA 59.777 33.333 0.00 0.00 0.00 4.08
498 528 1.079750 ACCGCTTCTTCTTCCTCGC 60.080 57.895 0.00 0.00 0.00 5.03
543 573 0.462047 CCCTTGCGCCCAACTAGTAG 60.462 60.000 4.18 0.00 0.00 2.57
544 574 0.249398 CCTTGCGCCCAACTAGTAGT 59.751 55.000 4.18 0.00 0.00 2.73
547 577 1.843368 TGCGCCCAACTAGTAGTACT 58.157 50.000 4.18 8.14 0.00 2.73
548 578 1.475280 TGCGCCCAACTAGTAGTACTG 59.525 52.381 13.29 5.74 0.00 2.74
549 579 1.202382 GCGCCCAACTAGTAGTACTGG 60.202 57.143 13.29 12.52 32.47 4.00
550 580 2.372264 CGCCCAACTAGTAGTACTGGA 58.628 52.381 19.49 0.00 29.56 3.86
552 582 3.629087 GCCCAACTAGTAGTACTGGAGA 58.371 50.000 19.49 0.00 29.56 3.71
553 583 3.380954 GCCCAACTAGTAGTACTGGAGAC 59.619 52.174 19.49 7.44 29.56 3.36
554 584 3.952967 CCCAACTAGTAGTACTGGAGACC 59.047 52.174 19.49 0.00 29.56 3.85
555 585 3.952967 CCAACTAGTAGTACTGGAGACCC 59.047 52.174 19.49 0.00 29.56 4.46
556 586 4.325187 CCAACTAGTAGTACTGGAGACCCT 60.325 50.000 19.49 0.00 29.56 4.34
557 587 4.776435 ACTAGTAGTACTGGAGACCCTC 57.224 50.000 19.49 0.00 30.59 4.30
558 588 4.373495 ACTAGTAGTACTGGAGACCCTCT 58.627 47.826 19.49 0.00 30.59 3.69
559 589 3.937778 AGTAGTACTGGAGACCCTCTC 57.062 52.381 5.39 0.00 42.66 3.20
560 590 3.466836 AGTAGTACTGGAGACCCTCTCT 58.533 50.000 5.39 0.00 42.95 3.10
561 591 3.457012 AGTAGTACTGGAGACCCTCTCTC 59.543 52.174 5.39 0.00 42.95 3.20
581 960 2.218115 CTCTCCACCCGTCCCTCTCT 62.218 65.000 0.00 0.00 0.00 3.10
583 962 2.218115 CTCCACCCGTCCCTCTCTCT 62.218 65.000 0.00 0.00 0.00 3.10
585 964 1.304952 CACCCGTCCCTCTCTCTCT 59.695 63.158 0.00 0.00 0.00 3.10
589 968 1.641552 CCGTCCCTCTCTCTCTCCCT 61.642 65.000 0.00 0.00 0.00 4.20
592 971 0.996762 TCCCTCTCTCTCTCCCTCCC 60.997 65.000 0.00 0.00 0.00 4.30
593 972 0.998945 CCCTCTCTCTCTCCCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
594 973 0.478507 CCTCTCTCTCTCCCTCCCTC 59.521 65.000 0.00 0.00 0.00 4.30
596 975 1.852965 CTCTCTCTCTCCCTCCCTCTT 59.147 57.143 0.00 0.00 0.00 2.85
659 1049 1.083141 GGAAACTCCCTCCCTCCCT 59.917 63.158 0.00 0.00 0.00 4.20
664 1054 3.707189 TCCCTCCCTCCCTTCCCC 61.707 72.222 0.00 0.00 0.00 4.81
790 1180 1.069255 GACCTCTCCGCTTCGTTTTC 58.931 55.000 0.00 0.00 0.00 2.29
844 1234 2.109181 CCTCTCGGGCGGGATTTC 59.891 66.667 0.00 0.00 0.00 2.17
848 1238 4.483243 TCGGGCGGGATTTCTGGC 62.483 66.667 0.00 0.00 45.62 4.85
856 1246 1.078143 GGATTTCTGGCGCTGAGGT 60.078 57.895 7.64 0.00 0.00 3.85
915 1311 4.680237 CTCCAACTCGCGGCCACA 62.680 66.667 6.13 0.00 0.00 4.17
923 1319 3.853330 CGCGGCCACAGAATCGTG 61.853 66.667 2.24 0.00 36.61 4.35
924 1320 2.434185 GCGGCCACAGAATCGTGA 60.434 61.111 2.24 0.00 39.34 4.35
925 1321 2.456119 GCGGCCACAGAATCGTGAG 61.456 63.158 2.24 0.37 39.34 3.51
926 1322 2.456119 CGGCCACAGAATCGTGAGC 61.456 63.158 2.24 7.88 39.34 4.26
927 1323 2.109126 GGCCACAGAATCGTGAGCC 61.109 63.158 0.00 15.30 42.22 4.70
967 1366 3.800826 GGTGGGCCGTGATCTTATT 57.199 52.632 0.00 0.00 0.00 1.40
968 1367 2.922740 GGTGGGCCGTGATCTTATTA 57.077 50.000 0.00 0.00 0.00 0.98
969 1368 2.490991 GGTGGGCCGTGATCTTATTAC 58.509 52.381 0.00 0.00 0.00 1.89
978 1377 3.491964 CGTGATCTTATTACCCCAAGCGA 60.492 47.826 0.00 0.00 0.00 4.93
995 1394 1.380112 GAGTGGCTAGGTCTCGGGT 60.380 63.158 0.00 0.00 0.00 5.28
997 1396 3.075005 TGGCTAGGTCTCGGGTGC 61.075 66.667 0.00 0.00 0.00 5.01
998 1397 2.760385 GGCTAGGTCTCGGGTGCT 60.760 66.667 0.00 0.00 0.00 4.40
1011 1410 2.048603 GGTGCTGATGGAAGGTGCC 61.049 63.158 0.00 0.00 0.00 5.01
1067 1466 0.308993 GATGTGCAGATTAAGGGCGC 59.691 55.000 0.00 0.00 38.47 6.53
1350 1779 2.574399 GTGGAGGAGCTCACCGTC 59.426 66.667 17.19 11.19 34.73 4.79
1438 1867 2.762459 AGAGGCCCGCCGTTATGA 60.762 61.111 0.00 0.00 41.95 2.15
1509 2001 3.329542 TAGCAGGGAAGCCTTGGCG 62.330 63.158 5.95 0.00 30.84 5.69
1624 2116 8.408601 AGTTCAATATGTCATTTGGTAATCAGC 58.591 33.333 0.00 0.00 0.00 4.26
1625 2117 7.878547 TCAATATGTCATTTGGTAATCAGCA 57.121 32.000 0.00 0.00 0.00 4.41
1626 2118 7.933396 TCAATATGTCATTTGGTAATCAGCAG 58.067 34.615 0.00 0.00 32.80 4.24
1687 2182 3.008330 GAGCAGCATGTCTTGTCTTCAT 58.992 45.455 0.00 0.00 39.31 2.57
1727 2258 1.511850 CATGTCTTGTCTTCACGGCA 58.488 50.000 0.00 0.00 32.36 5.69
1779 2346 1.593750 GCCGAATCAGAGCGAGCAT 60.594 57.895 0.00 0.00 0.00 3.79
1780 2347 0.319040 GCCGAATCAGAGCGAGCATA 60.319 55.000 0.00 0.00 0.00 3.14
1826 2393 2.279120 CGAGCAGCATCTCCCGTC 60.279 66.667 0.00 0.00 0.00 4.79
1827 2394 2.780094 CGAGCAGCATCTCCCGTCT 61.780 63.158 0.00 0.00 0.00 4.18
1828 2395 1.519719 GAGCAGCATCTCCCGTCTT 59.480 57.895 0.00 0.00 0.00 3.01
1829 2396 0.529555 GAGCAGCATCTCCCGTCTTC 60.530 60.000 0.00 0.00 0.00 2.87
1830 2397 1.219124 GCAGCATCTCCCGTCTTCA 59.781 57.895 0.00 0.00 0.00 3.02
1831 2398 1.086634 GCAGCATCTCCCGTCTTCAC 61.087 60.000 0.00 0.00 0.00 3.18
1832 2399 0.803768 CAGCATCTCCCGTCTTCACG 60.804 60.000 0.00 0.00 46.29 4.35
1841 2408 3.122150 CGTCTTCACGGCAGAATCA 57.878 52.632 0.00 0.00 42.73 2.57
1842 2409 0.994995 CGTCTTCACGGCAGAATCAG 59.005 55.000 0.00 0.00 42.73 2.90
1843 2410 1.402852 CGTCTTCACGGCAGAATCAGA 60.403 52.381 0.00 0.00 42.73 3.27
1844 2411 2.266554 GTCTTCACGGCAGAATCAGAG 58.733 52.381 0.00 0.00 0.00 3.35
1845 2412 1.005340 CTTCACGGCAGAATCAGAGC 58.995 55.000 0.00 0.00 0.00 4.09
1846 2413 0.737367 TTCACGGCAGAATCAGAGCG 60.737 55.000 0.00 0.00 0.00 5.03
1847 2414 1.153765 CACGGCAGAATCAGAGCGA 60.154 57.895 0.00 0.00 0.00 4.93
1848 2415 1.140589 ACGGCAGAATCAGAGCGAG 59.859 57.895 0.00 0.00 0.00 5.03
1849 2416 2.236382 CGGCAGAATCAGAGCGAGC 61.236 63.158 0.00 0.00 0.00 5.03
1850 2417 1.153489 GGCAGAATCAGAGCGAGCA 60.153 57.895 0.00 0.00 0.00 4.26
1851 2418 1.152989 GGCAGAATCAGAGCGAGCAG 61.153 60.000 0.00 0.00 0.00 4.24
1866 2433 3.387397 CGAGCAGCATATCATGTCTTCA 58.613 45.455 0.00 0.00 0.00 3.02
1867 2434 3.995048 CGAGCAGCATATCATGTCTTCAT 59.005 43.478 0.00 0.00 34.21 2.57
1877 2444 2.291365 CATGTCTTCATGGCCGAATCA 58.709 47.619 0.00 0.00 45.30 2.57
1878 2445 2.488204 TGTCTTCATGGCCGAATCAA 57.512 45.000 0.00 0.00 0.00 2.57
1879 2446 2.789213 TGTCTTCATGGCCGAATCAAA 58.211 42.857 0.00 0.00 0.00 2.69
1880 2447 2.749076 TGTCTTCATGGCCGAATCAAAG 59.251 45.455 0.00 0.00 0.00 2.77
1881 2448 2.749621 GTCTTCATGGCCGAATCAAAGT 59.250 45.455 0.00 0.00 0.00 2.66
1882 2449 2.749076 TCTTCATGGCCGAATCAAAGTG 59.251 45.455 0.00 0.00 0.00 3.16
2713 3280 6.528014 CTGAATCACAGTGAGCAGAATATC 57.472 41.667 22.85 7.50 41.30 1.63
2714 3281 5.363101 TGAATCACAGTGAGCAGAATATCC 58.637 41.667 9.64 0.00 0.00 2.59
2715 3282 3.827008 TCACAGTGAGCAGAATATCCC 57.173 47.619 0.00 0.00 0.00 3.85
2716 3283 2.101415 TCACAGTGAGCAGAATATCCCG 59.899 50.000 0.00 0.00 0.00 5.14
2717 3284 2.111384 ACAGTGAGCAGAATATCCCGT 58.889 47.619 0.00 0.00 0.00 5.28
2718 3285 2.101582 ACAGTGAGCAGAATATCCCGTC 59.898 50.000 0.00 0.00 0.00 4.79
2719 3286 2.363680 CAGTGAGCAGAATATCCCGTCT 59.636 50.000 0.00 0.00 0.00 4.18
2720 3287 3.034635 AGTGAGCAGAATATCCCGTCTT 58.965 45.455 0.00 0.00 0.00 3.01
2721 3288 3.068873 AGTGAGCAGAATATCCCGTCTTC 59.931 47.826 0.00 0.00 0.00 2.87
2722 3289 3.031013 TGAGCAGAATATCCCGTCTTCA 58.969 45.455 0.00 0.00 0.00 3.02
2723 3290 3.181475 TGAGCAGAATATCCCGTCTTCAC 60.181 47.826 0.00 0.00 0.00 3.18
2724 3291 2.128035 GCAGAATATCCCGTCTTCACG 58.872 52.381 0.00 0.00 46.29 4.35
2734 3301 1.413767 CGTCTTCACGGCCGAATCAG 61.414 60.000 35.90 20.81 42.73 2.90
2742 3309 1.519719 GGCCGAATCAGAGTGAGCT 59.480 57.895 0.00 0.00 0.00 4.09
2920 3925 2.155279 TCACGGCCGAATCAAAATGAA 58.845 42.857 35.90 4.23 0.00 2.57
3157 4162 5.163258 CCCTAAGATTCCTAGCTCAACACAT 60.163 44.000 0.00 0.00 0.00 3.21
3259 4264 0.942252 GGGAACTAATTAAGCCCGCG 59.058 55.000 0.00 0.00 0.00 6.46
3699 4704 2.002586 CGTCGGAGGTCGTTCTAAGTA 58.997 52.381 0.00 0.00 40.32 2.24
4025 5030 4.580580 ACCTCAAGAAGTCATTTTGTGGAC 59.419 41.667 10.45 0.00 38.30 4.02
4406 5412 5.710513 ACACATGCATCATAAACAACTGT 57.289 34.783 0.00 0.00 0.00 3.55
4656 5662 1.406903 GCCTTTGGCTATTGCATCCT 58.593 50.000 0.66 0.00 46.69 3.24
4755 5761 9.878667 TGATTAGTTGGATAAAATCAGACGTTA 57.121 29.630 0.00 0.00 34.34 3.18
4814 5820 3.248024 TGAGTTAAAGGAAGAGCTCCCA 58.752 45.455 10.93 0.00 46.81 4.37
4815 5821 3.008049 TGAGTTAAAGGAAGAGCTCCCAC 59.992 47.826 10.93 0.00 46.81 4.61
4818 5824 1.128188 AAAGGAAGAGCTCCCACGGT 61.128 55.000 10.93 0.00 46.81 4.83
5121 6129 7.023575 CCTTTTGTATGTGTAAGATGACAAGC 58.976 38.462 0.00 0.00 0.00 4.01
5582 6590 4.444536 AGAATTTGCAGCAGCTTGAAAAA 58.555 34.783 1.76 0.00 42.74 1.94
5684 6692 3.628487 TCCGTGAAAACTTTAACCACAGG 59.372 43.478 0.00 0.00 0.00 4.00
6169 7177 3.002759 GCATACTTCCTTCCTTCATTCGC 59.997 47.826 0.00 0.00 0.00 4.70
6223 7233 6.002082 TGGCATCATTTATCTGATTCTGAGG 58.998 40.000 0.00 0.41 33.59 3.86
6224 7234 5.106237 GGCATCATTTATCTGATTCTGAGGC 60.106 44.000 17.49 17.49 39.07 4.70
6233 7243 4.814147 TCTGATTCTGAGGCTTATATGCG 58.186 43.478 4.67 0.00 0.00 4.73
6242 7252 4.184629 GAGGCTTATATGCGTATCTTGGG 58.815 47.826 0.55 0.00 0.00 4.12
6462 7559 6.811253 ATTCCGTTATTGAAGCAAAGTACA 57.189 33.333 0.00 0.00 0.00 2.90
6591 7688 6.690194 AGAAAGCATGGACAATCTATTGAC 57.310 37.500 9.60 3.39 40.14 3.18
6599 7955 7.470079 CATGGACAATCTATTGACACTTCAAG 58.530 38.462 9.60 0.00 45.07 3.02
6654 8010 9.961265 GAAAAACTTAGTAGTATTGGTTTTGCT 57.039 29.630 9.96 2.27 37.10 3.91
7553 9142 0.675633 GCAACAGTCACCATGCCTTT 59.324 50.000 0.00 0.00 32.73 3.11
7594 9183 7.382488 GTCTTGCTTTTTGATTTACTCTTTCCC 59.618 37.037 0.00 0.00 0.00 3.97
8289 9880 8.591072 CAAATTGATGCCCTGAGGAAAATATAT 58.409 33.333 0.00 0.00 33.47 0.86
8336 10023 1.944709 GTACCTTGTTCCCACACACAC 59.055 52.381 0.00 0.00 30.32 3.82
8337 10024 0.329931 ACCTTGTTCCCACACACACA 59.670 50.000 0.00 0.00 30.32 3.72
8338 10025 1.272203 ACCTTGTTCCCACACACACAA 60.272 47.619 0.00 0.00 30.32 3.33
8339 10026 1.821753 CCTTGTTCCCACACACACAAA 59.178 47.619 0.00 0.00 30.32 2.83
8340 10027 2.232452 CCTTGTTCCCACACACACAAAA 59.768 45.455 0.00 0.00 30.32 2.44
8401 10088 4.899502 ACATTTATAGCCTCATTCCTCCG 58.100 43.478 0.00 0.00 0.00 4.63
8433 10120 4.411212 AGTTAACCACCAAACCTCTAGTGT 59.589 41.667 0.88 0.00 0.00 3.55
8464 10183 3.113260 ACACTTACTCTGCAACACCTC 57.887 47.619 0.00 0.00 0.00 3.85
8539 10260 7.232118 CCTTGATGGTAACTTGGAAAATCTT 57.768 36.000 0.00 0.00 37.61 2.40
8633 10357 1.334960 GGGTGAATTGTGAAGTGTGCG 60.335 52.381 0.00 0.00 0.00 5.34
8914 10744 8.932610 AGTTACAGGATGAGAATATCTGAATGT 58.067 33.333 0.00 0.00 39.69 2.71
8951 10781 6.511416 TGTTTCTTTGGTGACCATATGTTTG 58.489 36.000 4.56 0.00 31.53 2.93
8997 10830 7.213216 ACAAACAACTATGCATCAACACATA 57.787 32.000 0.19 0.00 0.00 2.29
9269 11106 4.688413 GCTAGAGCCTTACATGCTATGTTC 59.312 45.833 7.02 0.34 39.69 3.18
9365 11207 1.523758 AAACTGCGGAAGGTGACATC 58.476 50.000 0.00 0.00 0.00 3.06
9371 11213 1.508632 CGGAAGGTGACATCGTTGTT 58.491 50.000 0.00 0.00 35.79 2.83
9382 11224 5.235616 GTGACATCGTTGTTTGAAGGAGTTA 59.764 40.000 0.00 0.00 35.79 2.24
9533 11375 3.676093 ACCTTCCCGAGTTCAGAAATTC 58.324 45.455 0.00 0.00 0.00 2.17
9665 11508 2.070783 TGCGACCGACAAAAACCTATC 58.929 47.619 0.00 0.00 0.00 2.08
9727 11570 0.178961 GGCCCTGTTTGGAGAACCTT 60.179 55.000 0.00 0.00 38.35 3.50
9728 11571 1.248486 GCCCTGTTTGGAGAACCTTC 58.752 55.000 0.00 0.00 38.35 3.46
9729 11572 1.478654 GCCCTGTTTGGAGAACCTTCA 60.479 52.381 0.00 0.00 38.35 3.02
9730 11573 2.230660 CCCTGTTTGGAGAACCTTCAC 58.769 52.381 0.00 0.00 38.35 3.18
9731 11574 2.158608 CCCTGTTTGGAGAACCTTCACT 60.159 50.000 0.00 0.00 38.35 3.41
9732 11575 3.142174 CCTGTTTGGAGAACCTTCACTC 58.858 50.000 0.00 0.00 38.35 3.51
9739 11582 3.477210 GAGAACCTTCACTCCACAACT 57.523 47.619 0.00 0.00 0.00 3.16
9740 11583 3.809905 GAGAACCTTCACTCCACAACTT 58.190 45.455 0.00 0.00 0.00 2.66
9778 11621 3.128349 GGAGTTACTGTTGAAAGTCGCA 58.872 45.455 0.00 0.00 0.00 5.10
9780 11623 3.131396 AGTTACTGTTGAAAGTCGCAGG 58.869 45.455 0.00 0.00 33.62 4.85
9794 11637 3.058160 CAGGGCGCCTGTTTCCTG 61.058 66.667 28.56 19.63 45.82 3.86
9795 11638 4.351054 AGGGCGCCTGTTTCCTGG 62.351 66.667 28.56 0.00 29.57 4.45
9801 11644 2.747855 CCTGTTTCCTGGCTCCGC 60.748 66.667 0.00 0.00 0.00 5.54
9802 11645 2.348998 CTGTTTCCTGGCTCCGCT 59.651 61.111 0.00 0.00 0.00 5.52
9803 11646 2.032528 TGTTTCCTGGCTCCGCTG 59.967 61.111 0.00 0.00 0.00 5.18
9804 11647 3.435186 GTTTCCTGGCTCCGCTGC 61.435 66.667 0.00 0.00 0.00 5.25
9805 11648 3.640407 TTTCCTGGCTCCGCTGCT 61.640 61.111 0.00 0.00 0.00 4.24
9806 11649 3.612247 TTTCCTGGCTCCGCTGCTC 62.612 63.158 0.00 0.00 0.00 4.26
9808 11651 4.527583 CCTGGCTCCGCTGCTCTC 62.528 72.222 0.00 0.00 0.00 3.20
9809 11652 4.869440 CTGGCTCCGCTGCTCTCG 62.869 72.222 0.00 0.00 0.00 4.04
9813 11656 3.222855 CTCCGCTGCTCTCGGGAT 61.223 66.667 10.90 0.00 46.43 3.85
9814 11657 2.759973 TCCGCTGCTCTCGGGATT 60.760 61.111 10.90 0.00 46.43 3.01
9815 11658 2.187946 CCGCTGCTCTCGGGATTT 59.812 61.111 0.00 0.00 42.99 2.17
9816 11659 1.884926 CCGCTGCTCTCGGGATTTC 60.885 63.158 0.00 0.00 42.99 2.17
9817 11660 2.233654 CGCTGCTCTCGGGATTTCG 61.234 63.158 0.00 0.00 0.00 3.46
9818 11661 2.529619 GCTGCTCTCGGGATTTCGC 61.530 63.158 0.00 0.00 0.00 4.70
9843 11686 2.327228 GGTGGAACAACGAACAGGG 58.673 57.895 0.00 0.00 44.16 4.45
9844 11687 0.464916 GGTGGAACAACGAACAGGGT 60.465 55.000 0.00 0.00 44.16 4.34
9845 11688 0.942252 GTGGAACAACGAACAGGGTC 59.058 55.000 0.00 0.00 44.16 4.46
9846 11689 0.834612 TGGAACAACGAACAGGGTCT 59.165 50.000 0.00 0.00 31.92 3.85
9847 11690 1.210967 TGGAACAACGAACAGGGTCTT 59.789 47.619 0.00 0.00 31.92 3.01
9848 11691 2.435069 TGGAACAACGAACAGGGTCTTA 59.565 45.455 0.00 0.00 31.92 2.10
9849 11692 3.118334 TGGAACAACGAACAGGGTCTTAA 60.118 43.478 0.00 0.00 31.92 1.85
9850 11693 4.070009 GGAACAACGAACAGGGTCTTAAT 58.930 43.478 0.00 0.00 0.00 1.40
9851 11694 4.083484 GGAACAACGAACAGGGTCTTAATG 60.083 45.833 0.00 0.00 0.00 1.90
9852 11695 4.081322 ACAACGAACAGGGTCTTAATGT 57.919 40.909 0.00 0.00 0.00 2.71
9853 11696 5.217978 ACAACGAACAGGGTCTTAATGTA 57.782 39.130 0.00 0.00 0.00 2.29
9854 11697 4.992951 ACAACGAACAGGGTCTTAATGTAC 59.007 41.667 0.00 0.00 0.00 2.90
9855 11698 3.841643 ACGAACAGGGTCTTAATGTACG 58.158 45.455 0.00 0.00 0.00 3.67
9856 11699 3.507233 ACGAACAGGGTCTTAATGTACGA 59.493 43.478 0.00 0.00 0.00 3.43
9857 11700 4.022068 ACGAACAGGGTCTTAATGTACGAA 60.022 41.667 0.00 0.00 0.00 3.85
9858 11701 5.107133 CGAACAGGGTCTTAATGTACGAAT 58.893 41.667 0.00 0.00 0.00 3.34
9859 11702 6.127647 ACGAACAGGGTCTTAATGTACGAATA 60.128 38.462 0.00 0.00 0.00 1.75
9860 11703 6.417044 CGAACAGGGTCTTAATGTACGAATAG 59.583 42.308 0.00 0.00 0.00 1.73
9861 11704 6.158023 ACAGGGTCTTAATGTACGAATAGG 57.842 41.667 0.00 0.00 0.00 2.57
9862 11705 4.989168 CAGGGTCTTAATGTACGAATAGGC 59.011 45.833 0.00 0.00 0.00 3.93
9863 11706 4.900054 AGGGTCTTAATGTACGAATAGGCT 59.100 41.667 0.00 0.00 0.00 4.58
9864 11707 5.010820 AGGGTCTTAATGTACGAATAGGCTC 59.989 44.000 0.00 0.00 0.00 4.70
9865 11708 5.010820 GGGTCTTAATGTACGAATAGGCTCT 59.989 44.000 0.00 0.00 0.00 4.09
9866 11709 6.462628 GGGTCTTAATGTACGAATAGGCTCTT 60.463 42.308 0.00 0.00 0.00 2.85
9867 11710 6.641723 GGTCTTAATGTACGAATAGGCTCTTC 59.358 42.308 2.71 2.71 0.00 2.87
9868 11711 7.427214 GTCTTAATGTACGAATAGGCTCTTCT 58.573 38.462 10.43 1.69 0.00 2.85
9869 11712 7.380065 GTCTTAATGTACGAATAGGCTCTTCTG 59.620 40.741 10.43 6.91 0.00 3.02
9870 11713 5.854010 AATGTACGAATAGGCTCTTCTGA 57.146 39.130 10.43 0.00 0.00 3.27
9871 11714 4.634184 TGTACGAATAGGCTCTTCTGAC 57.366 45.455 10.43 8.37 0.00 3.51
9872 11715 4.270834 TGTACGAATAGGCTCTTCTGACT 58.729 43.478 10.43 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.888930 GTCAAAGTCAAGGGGTTTCATCA 59.111 43.478 0.00 0.00 0.00 3.07
1 2 3.888930 TGTCAAAGTCAAGGGGTTTCATC 59.111 43.478 0.00 0.00 0.00 2.92
2 3 3.909732 TGTCAAAGTCAAGGGGTTTCAT 58.090 40.909 0.00 0.00 0.00 2.57
3 4 3.374042 TGTCAAAGTCAAGGGGTTTCA 57.626 42.857 0.00 0.00 0.00 2.69
4 5 4.340950 TCAATGTCAAAGTCAAGGGGTTTC 59.659 41.667 0.00 0.00 0.00 2.78
5 6 4.099419 GTCAATGTCAAAGTCAAGGGGTTT 59.901 41.667 0.00 0.00 0.00 3.27
6 7 3.636764 GTCAATGTCAAAGTCAAGGGGTT 59.363 43.478 0.00 0.00 0.00 4.11
7 8 3.222603 GTCAATGTCAAAGTCAAGGGGT 58.777 45.455 0.00 0.00 0.00 4.95
8 9 3.221771 TGTCAATGTCAAAGTCAAGGGG 58.778 45.455 0.00 0.00 0.00 4.79
9 10 5.009911 TGAATGTCAATGTCAAAGTCAAGGG 59.990 40.000 0.00 0.00 0.00 3.95
10 11 5.916883 GTGAATGTCAATGTCAAAGTCAAGG 59.083 40.000 0.00 0.00 0.00 3.61
11 12 6.732154 AGTGAATGTCAATGTCAAAGTCAAG 58.268 36.000 0.00 0.00 0.00 3.02
12 13 6.318396 TGAGTGAATGTCAATGTCAAAGTCAA 59.682 34.615 0.00 0.00 0.00 3.18
13 14 5.821995 TGAGTGAATGTCAATGTCAAAGTCA 59.178 36.000 0.00 0.00 0.00 3.41
14 15 6.304356 TGAGTGAATGTCAATGTCAAAGTC 57.696 37.500 0.00 0.00 0.00 3.01
15 16 6.698008 TTGAGTGAATGTCAATGTCAAAGT 57.302 33.333 0.00 0.00 0.00 2.66
16 17 6.143438 GCTTTGAGTGAATGTCAATGTCAAAG 59.857 38.462 21.16 21.16 44.09 2.77
17 18 5.978919 GCTTTGAGTGAATGTCAATGTCAAA 59.021 36.000 9.53 9.53 34.48 2.69
18 19 5.507817 GGCTTTGAGTGAATGTCAATGTCAA 60.508 40.000 0.00 0.00 35.09 3.18
19 20 4.022935 GGCTTTGAGTGAATGTCAATGTCA 60.023 41.667 0.00 0.00 35.09 3.58
20 21 4.217118 AGGCTTTGAGTGAATGTCAATGTC 59.783 41.667 0.00 0.00 35.16 3.06
21 22 4.022589 CAGGCTTTGAGTGAATGTCAATGT 60.023 41.667 0.00 0.00 33.95 2.71
22 23 4.482386 CAGGCTTTGAGTGAATGTCAATG 58.518 43.478 0.00 0.00 33.95 2.82
23 24 3.057033 GCAGGCTTTGAGTGAATGTCAAT 60.057 43.478 0.00 0.00 33.95 2.57
24 25 2.294233 GCAGGCTTTGAGTGAATGTCAA 59.706 45.455 0.00 0.00 31.98 3.18
25 26 1.881973 GCAGGCTTTGAGTGAATGTCA 59.118 47.619 0.00 0.00 0.00 3.58
26 27 1.200948 GGCAGGCTTTGAGTGAATGTC 59.799 52.381 0.00 0.00 0.00 3.06
27 28 1.251251 GGCAGGCTTTGAGTGAATGT 58.749 50.000 0.00 0.00 0.00 2.71
28 29 0.529378 GGGCAGGCTTTGAGTGAATG 59.471 55.000 0.00 0.00 0.00 2.67
29 30 0.962356 CGGGCAGGCTTTGAGTGAAT 60.962 55.000 0.00 0.00 0.00 2.57
30 31 1.600636 CGGGCAGGCTTTGAGTGAA 60.601 57.895 0.00 0.00 0.00 3.18
31 32 2.032528 CGGGCAGGCTTTGAGTGA 59.967 61.111 0.00 0.00 0.00 3.41
32 33 3.741476 GCGGGCAGGCTTTGAGTG 61.741 66.667 0.00 0.00 0.00 3.51
33 34 4.269523 TGCGGGCAGGCTTTGAGT 62.270 61.111 0.00 0.00 0.00 3.41
34 35 3.437795 CTGCGGGCAGGCTTTGAG 61.438 66.667 12.78 0.00 40.17 3.02
35 36 2.974692 TTTCTGCGGGCAGGCTTTGA 62.975 55.000 19.64 0.00 43.75 2.69
36 37 2.086251 TTTTCTGCGGGCAGGCTTTG 62.086 55.000 19.64 0.00 43.75 2.77
37 38 1.398958 TTTTTCTGCGGGCAGGCTTT 61.399 50.000 19.64 0.00 43.75 3.51
38 39 1.832167 TTTTTCTGCGGGCAGGCTT 60.832 52.632 19.64 0.00 43.75 4.35
39 40 2.203480 TTTTTCTGCGGGCAGGCT 60.203 55.556 19.64 0.00 43.75 4.58
56 57 5.584649 TCGACTTGTGTGAATGTCTCTTTTT 59.415 36.000 0.00 0.00 0.00 1.94
57 58 5.116180 TCGACTTGTGTGAATGTCTCTTTT 58.884 37.500 0.00 0.00 0.00 2.27
58 59 4.693283 TCGACTTGTGTGAATGTCTCTTT 58.307 39.130 0.00 0.00 0.00 2.52
59 60 4.322080 TCGACTTGTGTGAATGTCTCTT 57.678 40.909 0.00 0.00 0.00 2.85
60 61 4.202161 ACTTCGACTTGTGTGAATGTCTCT 60.202 41.667 0.00 0.00 0.00 3.10
61 62 4.051922 ACTTCGACTTGTGTGAATGTCTC 58.948 43.478 0.00 0.00 0.00 3.36
62 63 3.804325 CACTTCGACTTGTGTGAATGTCT 59.196 43.478 0.00 0.00 32.72 3.41
63 64 3.555956 ACACTTCGACTTGTGTGAATGTC 59.444 43.478 14.61 0.00 44.52 3.06
64 65 3.531538 ACACTTCGACTTGTGTGAATGT 58.468 40.909 14.61 0.00 44.52 2.71
65 66 4.536364 AACACTTCGACTTGTGTGAATG 57.464 40.909 15.66 0.00 45.33 2.67
66 67 4.634004 TCAAACACTTCGACTTGTGTGAAT 59.366 37.500 13.71 5.10 45.33 2.57
67 68 3.997681 TCAAACACTTCGACTTGTGTGAA 59.002 39.130 13.71 4.30 45.33 3.18
68 69 3.369756 GTCAAACACTTCGACTTGTGTGA 59.630 43.478 12.52 12.52 45.33 3.58
69 70 3.370978 AGTCAAACACTTCGACTTGTGTG 59.629 43.478 15.66 12.35 45.33 3.82
70 71 4.000988 AAGTCAAACACTTCGACTTGTGT 58.999 39.130 10.93 10.93 45.73 3.72
71 72 4.600012 AAGTCAAACACTTCGACTTGTG 57.400 40.909 3.38 9.85 45.73 3.33
72 73 5.622770 AAAAGTCAAACACTTCGACTTGT 57.377 34.783 4.90 0.00 46.53 3.16
73 74 6.314784 AGAAAAAGTCAAACACTTCGACTTG 58.685 36.000 4.90 0.00 46.53 3.16
75 76 6.817140 AGTAGAAAAAGTCAAACACTTCGACT 59.183 34.615 0.00 0.00 45.32 4.18
76 77 7.001695 AGTAGAAAAAGTCAAACACTTCGAC 57.998 36.000 0.00 0.00 45.32 4.20
77 78 7.977853 ACTAGTAGAAAAAGTCAAACACTTCGA 59.022 33.333 3.59 0.00 45.32 3.71
78 79 8.128016 ACTAGTAGAAAAAGTCAAACACTTCG 57.872 34.615 3.59 0.00 45.32 3.79
79 80 9.315525 AGACTAGTAGAAAAAGTCAAACACTTC 57.684 33.333 3.59 0.00 45.32 3.01
81 82 7.648510 CGAGACTAGTAGAAAAAGTCAAACACT 59.351 37.037 3.59 0.00 41.69 3.55
82 83 7.434602 ACGAGACTAGTAGAAAAAGTCAAACAC 59.565 37.037 3.59 0.00 41.69 3.32
83 84 7.486647 ACGAGACTAGTAGAAAAAGTCAAACA 58.513 34.615 3.59 0.00 41.69 2.83
84 85 7.927305 ACGAGACTAGTAGAAAAAGTCAAAC 57.073 36.000 3.59 0.00 41.69 2.93
85 86 8.192774 TCAACGAGACTAGTAGAAAAAGTCAAA 58.807 33.333 3.59 0.00 41.69 2.69
86 87 7.709947 TCAACGAGACTAGTAGAAAAAGTCAA 58.290 34.615 3.59 0.00 41.69 3.18
87 88 7.228108 TCTCAACGAGACTAGTAGAAAAAGTCA 59.772 37.037 3.59 0.00 41.69 3.41
88 89 7.583230 TCTCAACGAGACTAGTAGAAAAAGTC 58.417 38.462 3.59 0.00 39.95 3.01
89 90 7.507733 TCTCAACGAGACTAGTAGAAAAAGT 57.492 36.000 3.59 0.00 33.35 2.66
90 91 8.692615 GTTTCTCAACGAGACTAGTAGAAAAAG 58.307 37.037 13.63 0.88 38.51 2.27
91 92 8.571461 GTTTCTCAACGAGACTAGTAGAAAAA 57.429 34.615 13.63 0.95 38.51 1.94
107 108 2.917971 CGAGATGAGTCCGTTTCTCAAC 59.082 50.000 5.75 4.05 43.65 3.18
108 109 2.671351 GCGAGATGAGTCCGTTTCTCAA 60.671 50.000 5.75 0.00 43.65 3.02
109 110 1.135373 GCGAGATGAGTCCGTTTCTCA 60.135 52.381 0.00 0.00 44.37 3.27
110 111 1.133407 AGCGAGATGAGTCCGTTTCTC 59.867 52.381 0.00 0.00 32.97 2.87
111 112 1.178276 AGCGAGATGAGTCCGTTTCT 58.822 50.000 0.00 0.00 0.00 2.52
112 113 2.846039 TAGCGAGATGAGTCCGTTTC 57.154 50.000 0.00 0.00 0.00 2.78
113 114 3.802948 AATAGCGAGATGAGTCCGTTT 57.197 42.857 0.00 0.00 0.00 3.60
114 115 3.119101 ACAAATAGCGAGATGAGTCCGTT 60.119 43.478 0.00 0.00 0.00 4.44
115 116 2.427453 ACAAATAGCGAGATGAGTCCGT 59.573 45.455 0.00 0.00 0.00 4.69
116 117 3.046390 GACAAATAGCGAGATGAGTCCG 58.954 50.000 0.00 0.00 0.00 4.79
117 118 3.385577 GGACAAATAGCGAGATGAGTCC 58.614 50.000 0.00 0.00 37.70 3.85
118 119 3.046390 CGGACAAATAGCGAGATGAGTC 58.954 50.000 0.00 0.00 0.00 3.36
119 120 2.223829 CCGGACAAATAGCGAGATGAGT 60.224 50.000 0.00 0.00 0.00 3.41
120 121 2.398498 CCGGACAAATAGCGAGATGAG 58.602 52.381 0.00 0.00 0.00 2.90
121 122 1.068588 CCCGGACAAATAGCGAGATGA 59.931 52.381 0.73 0.00 0.00 2.92
122 123 1.202533 ACCCGGACAAATAGCGAGATG 60.203 52.381 0.73 0.00 0.00 2.90
123 124 1.120530 ACCCGGACAAATAGCGAGAT 58.879 50.000 0.73 0.00 0.00 2.75
124 125 0.899720 AACCCGGACAAATAGCGAGA 59.100 50.000 0.73 0.00 0.00 4.04
125 126 1.006832 CAACCCGGACAAATAGCGAG 58.993 55.000 0.73 0.00 0.00 5.03
126 127 0.391927 CCAACCCGGACAAATAGCGA 60.392 55.000 0.73 0.00 36.56 4.93
127 128 1.373590 CCCAACCCGGACAAATAGCG 61.374 60.000 0.73 0.00 36.56 4.26
128 129 1.035385 CCCCAACCCGGACAAATAGC 61.035 60.000 0.73 0.00 36.56 2.97
129 130 0.330267 ACCCCAACCCGGACAAATAG 59.670 55.000 0.73 0.00 36.56 1.73
130 131 0.778720 AACCCCAACCCGGACAAATA 59.221 50.000 0.73 0.00 36.56 1.40
131 132 0.778720 TAACCCCAACCCGGACAAAT 59.221 50.000 0.73 0.00 36.56 2.32
132 133 0.778720 ATAACCCCAACCCGGACAAA 59.221 50.000 0.73 0.00 36.56 2.83
133 134 0.778720 AATAACCCCAACCCGGACAA 59.221 50.000 0.73 0.00 36.56 3.18
134 135 1.560611 CTAATAACCCCAACCCGGACA 59.439 52.381 0.73 0.00 36.56 4.02
135 136 1.134007 CCTAATAACCCCAACCCGGAC 60.134 57.143 0.73 0.00 36.56 4.79
136 137 1.215140 CCTAATAACCCCAACCCGGA 58.785 55.000 0.73 0.00 36.56 5.14
137 138 0.184211 CCCTAATAACCCCAACCCGG 59.816 60.000 0.00 0.00 0.00 5.73
138 139 1.215140 TCCCTAATAACCCCAACCCG 58.785 55.000 0.00 0.00 0.00 5.28
139 140 3.270169 TCTTTCCCTAATAACCCCAACCC 59.730 47.826 0.00 0.00 0.00 4.11
140 141 4.596354 TCTTTCCCTAATAACCCCAACC 57.404 45.455 0.00 0.00 0.00 3.77
141 142 5.823312 TCTTCTTTCCCTAATAACCCCAAC 58.177 41.667 0.00 0.00 0.00 3.77
142 143 6.471942 TTCTTCTTTCCCTAATAACCCCAA 57.528 37.500 0.00 0.00 0.00 4.12
143 144 6.471942 TTTCTTCTTTCCCTAATAACCCCA 57.528 37.500 0.00 0.00 0.00 4.96
144 145 7.786046 TTTTTCTTCTTTCCCTAATAACCCC 57.214 36.000 0.00 0.00 0.00 4.95
165 166 1.830086 GCGTGGTGCGTTTAGTTTTT 58.170 45.000 0.00 0.00 43.66 1.94
166 167 3.537471 GCGTGGTGCGTTTAGTTTT 57.463 47.368 0.00 0.00 43.66 2.43
200 201 0.798771 GCGACCAAGAGTCAGCGTAG 60.799 60.000 0.00 0.00 46.69 3.51
201 202 1.211969 GCGACCAAGAGTCAGCGTA 59.788 57.895 0.00 0.00 46.69 4.42
202 203 2.049063 GCGACCAAGAGTCAGCGT 60.049 61.111 0.00 0.00 46.69 5.07
203 204 2.811317 GGCGACCAAGAGTCAGCG 60.811 66.667 0.00 0.00 46.69 5.18
221 222 4.796231 CTTGGTCGAGTCGGGCGG 62.796 72.222 13.54 0.00 0.00 6.13
223 224 3.876589 TTGCTTGGTCGAGTCGGGC 62.877 63.158 13.54 9.97 0.00 6.13
224 225 1.738099 CTTGCTTGGTCGAGTCGGG 60.738 63.158 13.54 0.00 0.00 5.14
225 226 2.383527 GCTTGCTTGGTCGAGTCGG 61.384 63.158 13.54 0.00 0.00 4.79
226 227 2.720758 CGCTTGCTTGGTCGAGTCG 61.721 63.158 6.09 6.09 0.00 4.18
227 228 1.347817 CTCGCTTGCTTGGTCGAGTC 61.348 60.000 0.00 0.00 42.24 3.36
228 229 1.373497 CTCGCTTGCTTGGTCGAGT 60.373 57.895 0.00 0.00 42.24 4.18
229 230 3.468007 CTCGCTTGCTTGGTCGAG 58.532 61.111 0.00 0.00 41.66 4.04
230 231 2.738521 GCTCGCTTGCTTGGTCGA 60.739 61.111 0.00 0.00 0.00 4.20
231 232 4.139420 CGCTCGCTTGCTTGGTCG 62.139 66.667 0.00 0.00 0.00 4.79
232 233 2.734673 CTCGCTCGCTTGCTTGGTC 61.735 63.158 0.00 0.00 0.00 4.02
233 234 2.740055 CTCGCTCGCTTGCTTGGT 60.740 61.111 0.00 0.00 0.00 3.67
234 235 4.157958 GCTCGCTCGCTTGCTTGG 62.158 66.667 0.00 0.00 0.00 3.61
235 236 4.495939 CGCTCGCTCGCTTGCTTG 62.496 66.667 0.00 0.00 0.00 4.01
236 237 4.724602 TCGCTCGCTCGCTTGCTT 62.725 61.111 0.00 0.00 0.00 3.91
247 248 4.785512 ACTTGCCTCGCTCGCTCG 62.786 66.667 0.00 0.00 0.00 5.03
248 249 2.433318 AACTTGCCTCGCTCGCTC 60.433 61.111 0.00 0.00 0.00 5.03
249 250 2.740055 CAACTTGCCTCGCTCGCT 60.740 61.111 0.00 0.00 0.00 4.93
250 251 3.793144 CCAACTTGCCTCGCTCGC 61.793 66.667 0.00 0.00 0.00 5.03
251 252 3.121030 CCCAACTTGCCTCGCTCG 61.121 66.667 0.00 0.00 0.00 5.03
252 253 3.435186 GCCCAACTTGCCTCGCTC 61.435 66.667 0.00 0.00 0.00 5.03
253 254 4.269523 TGCCCAACTTGCCTCGCT 62.270 61.111 0.00 0.00 0.00 4.93
254 255 3.741476 CTGCCCAACTTGCCTCGC 61.741 66.667 0.00 0.00 0.00 5.03
255 256 2.032528 TCTGCCCAACTTGCCTCG 59.967 61.111 0.00 0.00 0.00 4.63
256 257 2.338785 GCTCTGCCCAACTTGCCTC 61.339 63.158 0.00 0.00 0.00 4.70
257 258 2.282745 GCTCTGCCCAACTTGCCT 60.283 61.111 0.00 0.00 0.00 4.75
258 259 2.598394 TGCTCTGCCCAACTTGCC 60.598 61.111 0.00 0.00 0.00 4.52
259 260 2.633509 CCTGCTCTGCCCAACTTGC 61.634 63.158 0.00 0.00 0.00 4.01
260 261 2.633509 GCCTGCTCTGCCCAACTTG 61.634 63.158 0.00 0.00 0.00 3.16
261 262 2.282745 GCCTGCTCTGCCCAACTT 60.283 61.111 0.00 0.00 0.00 2.66
262 263 4.357279 GGCCTGCTCTGCCCAACT 62.357 66.667 0.00 0.00 43.33 3.16
350 360 4.404098 CTTTGGGGTCGGGGTCGG 62.404 72.222 0.00 0.00 36.95 4.79
351 361 4.404098 CCTTTGGGGTCGGGGTCG 62.404 72.222 0.00 0.00 37.82 4.79
352 362 4.735358 GCCTTTGGGGTCGGGGTC 62.735 72.222 0.00 0.00 37.43 4.46
356 366 4.323477 TCACGCCTTTGGGGTCGG 62.323 66.667 3.25 0.00 45.92 4.79
357 367 2.742372 CTCACGCCTTTGGGGTCG 60.742 66.667 3.25 1.19 45.92 4.79
358 368 2.359975 CCTCACGCCTTTGGGGTC 60.360 66.667 3.25 0.00 45.92 4.46
380 390 1.961277 CTTGTTTCTGCGCTCCGGT 60.961 57.895 9.73 0.00 0.00 5.28
381 391 1.961277 ACTTGTTTCTGCGCTCCGG 60.961 57.895 9.73 0.00 0.00 5.14
413 429 1.004628 TGCTGCTGCTTTATCTTCCCA 59.995 47.619 17.00 0.00 40.48 4.37
418 434 1.093159 GTGCTGCTGCTGCTTTATCT 58.907 50.000 27.67 0.00 40.48 1.98
437 453 5.452777 AGGAAAGAAAGAAAGAAAATCGCG 58.547 37.500 0.00 0.00 0.00 5.87
438 454 6.346120 GCAAGGAAAGAAAGAAAGAAAATCGC 60.346 38.462 0.00 0.00 0.00 4.58
439 455 6.697019 TGCAAGGAAAGAAAGAAAGAAAATCG 59.303 34.615 0.00 0.00 0.00 3.34
441 457 8.969260 ATTGCAAGGAAAGAAAGAAAGAAAAT 57.031 26.923 4.94 0.00 0.00 1.82
448 478 7.224557 GCTAAACAATTGCAAGGAAAGAAAGAA 59.775 33.333 4.94 0.00 0.00 2.52
455 485 3.244387 GGGGCTAAACAATTGCAAGGAAA 60.244 43.478 4.94 0.00 0.00 3.13
503 533 4.179599 GAGGGGAGGGGAGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
550 580 0.629058 GTGGAGAGGAGAGAGGGTCT 59.371 60.000 0.00 0.00 38.71 3.85
552 582 1.700985 GGTGGAGAGGAGAGAGGGT 59.299 63.158 0.00 0.00 0.00 4.34
553 583 1.075600 GGGTGGAGAGGAGAGAGGG 60.076 68.421 0.00 0.00 0.00 4.30
554 584 1.454847 CGGGTGGAGAGGAGAGAGG 60.455 68.421 0.00 0.00 0.00 3.69
555 585 0.750182 GACGGGTGGAGAGGAGAGAG 60.750 65.000 0.00 0.00 0.00 3.20
556 586 1.303615 GACGGGTGGAGAGGAGAGA 59.696 63.158 0.00 0.00 0.00 3.10
557 587 1.755008 GGACGGGTGGAGAGGAGAG 60.755 68.421 0.00 0.00 0.00 3.20
558 588 2.359404 GGACGGGTGGAGAGGAGA 59.641 66.667 0.00 0.00 0.00 3.71
559 589 2.760385 GGGACGGGTGGAGAGGAG 60.760 72.222 0.00 0.00 0.00 3.69
560 590 3.273654 AGGGACGGGTGGAGAGGA 61.274 66.667 0.00 0.00 0.00 3.71
561 591 2.760385 GAGGGACGGGTGGAGAGG 60.760 72.222 0.00 0.00 0.00 3.69
562 592 1.755008 GAGAGGGACGGGTGGAGAG 60.755 68.421 0.00 0.00 0.00 3.20
581 960 1.615814 CGGAAGAGGGAGGGAGAGA 59.384 63.158 0.00 0.00 0.00 3.10
583 962 2.690452 CCGGAAGAGGGAGGGAGA 59.310 66.667 0.00 0.00 0.00 3.71
585 964 4.798682 GGCCGGAAGAGGGAGGGA 62.799 72.222 5.05 0.00 0.00 4.20
607 995 1.304134 CCCAGGTTCCCTTTTCCGG 60.304 63.158 0.00 0.00 0.00 5.14
651 1041 3.707189 GGGAGGGGAAGGGAGGGA 61.707 72.222 0.00 0.00 0.00 4.20
680 1070 4.587189 ATTAGAGACGCCGCCGCC 62.587 66.667 0.00 0.00 38.22 6.13
681 1071 3.030882 GATTAGAGACGCCGCCGC 61.031 66.667 0.00 0.00 38.22 6.53
682 1072 2.354773 GGATTAGAGACGCCGCCG 60.355 66.667 0.00 0.00 41.14 6.46
683 1073 2.029221 GGGATTAGAGACGCCGCC 59.971 66.667 0.00 0.00 0.00 6.13
684 1074 2.354773 CGGGATTAGAGACGCCGC 60.355 66.667 0.00 0.00 0.00 6.53
685 1075 2.354773 GCGGGATTAGAGACGCCG 60.355 66.667 0.00 0.00 45.70 6.46
689 1079 0.030908 CTGACCGCGGGATTAGAGAC 59.969 60.000 31.76 9.06 0.00 3.36
690 1080 0.395311 ACTGACCGCGGGATTAGAGA 60.395 55.000 31.76 2.27 0.00 3.10
762 1152 1.736586 CGGAGAGGTCAGGATTCGG 59.263 63.158 0.00 0.00 0.00 4.30
915 1311 3.082579 GCCTCCGGCTCACGATTCT 62.083 63.158 0.00 0.00 46.69 2.40
927 1323 4.598894 CATCCGCCTCTGCCTCCG 62.599 72.222 0.00 0.00 0.00 4.63
978 1377 1.682684 CACCCGAGACCTAGCCACT 60.683 63.158 0.00 0.00 0.00 4.00
989 1388 1.153289 CCTTCCATCAGCACCCGAG 60.153 63.158 0.00 0.00 0.00 4.63
995 1394 1.001764 CTGGCACCTTCCATCAGCA 60.002 57.895 0.00 0.00 35.22 4.41
997 1396 1.077212 CCCTGGCACCTTCCATCAG 60.077 63.158 0.00 0.00 35.22 2.90
998 1397 3.089838 CCCTGGCACCTTCCATCA 58.910 61.111 0.00 0.00 35.22 3.07
1041 1440 2.337879 TAATCTGCACATCCCCGGCC 62.338 60.000 0.00 0.00 0.00 6.13
1042 1441 0.465460 TTAATCTGCACATCCCCGGC 60.465 55.000 0.00 0.00 0.00 6.13
1043 1442 1.597742 CTTAATCTGCACATCCCCGG 58.402 55.000 0.00 0.00 0.00 5.73
1044 1443 1.597742 CCTTAATCTGCACATCCCCG 58.402 55.000 0.00 0.00 0.00 5.73
1045 1444 1.986882 CCCTTAATCTGCACATCCCC 58.013 55.000 0.00 0.00 0.00 4.81
1057 1456 0.181350 CTCTCCTTGGCGCCCTTAAT 59.819 55.000 26.77 0.00 0.00 1.40
1067 1466 4.479993 CCTGGCCGCTCTCCTTGG 62.480 72.222 0.00 0.00 0.00 3.61
1278 1701 4.314440 TGCTGGGTGACGCTGTCC 62.314 66.667 8.21 0.00 0.00 4.02
1280 1703 4.996434 GCTGCTGGGTGACGCTGT 62.996 66.667 8.21 0.00 0.00 4.40
1350 1779 1.066358 TCAGAGCTGATGCAGTTCCTG 60.066 52.381 7.52 6.96 41.53 3.86
1422 1851 2.280186 CTCATAACGGCGGGCCTC 60.280 66.667 13.24 0.00 0.00 4.70
1428 1857 3.809374 GAGGCCCCTCATAACGGCG 62.809 68.421 4.80 4.80 43.99 6.46
1438 1867 2.286197 GTTACCCCAGAGGCCCCT 60.286 66.667 0.00 0.00 40.58 4.79
1509 2001 4.043200 GCGTTGCCAAGGCTGACC 62.043 66.667 14.46 2.68 42.51 4.02
1574 2066 1.027792 ATTACCATTTTCGCCGCGGT 61.028 50.000 28.70 5.57 0.00 5.68
1624 2116 1.002359 CAAGATATGCTGCAGCTGCTG 60.002 52.381 36.61 35.16 42.66 4.41
1625 2117 1.309950 CAAGATATGCTGCAGCTGCT 58.690 50.000 36.61 24.34 42.66 4.24
1626 2118 1.002684 GACAAGATATGCTGCAGCTGC 60.003 52.381 36.61 31.89 42.66 5.25
1631 2123 2.931969 CGTGAAGACAAGATATGCTGCA 59.068 45.455 4.13 4.13 0.00 4.41
1687 2182 1.153489 GCTCGCTCTGATTCTGCCA 60.153 57.895 0.00 0.00 0.00 4.92
1727 2258 2.277969 CATGTTGCTCGCTCTGATTCT 58.722 47.619 0.00 0.00 0.00 2.40
1779 2346 1.066430 GGCCGTGAAGACAGGACATTA 60.066 52.381 0.00 0.00 34.32 1.90
1780 2347 0.321653 GGCCGTGAAGACAGGACATT 60.322 55.000 0.00 0.00 34.32 2.71
1823 2390 0.994995 CTGATTCTGCCGTGAAGACG 59.005 55.000 0.00 0.00 45.67 4.18
1824 2391 2.266554 CTCTGATTCTGCCGTGAAGAC 58.733 52.381 0.00 0.00 0.00 3.01
1825 2392 1.404717 GCTCTGATTCTGCCGTGAAGA 60.405 52.381 0.00 0.00 0.00 2.87
1826 2393 1.005340 GCTCTGATTCTGCCGTGAAG 58.995 55.000 0.00 0.00 0.00 3.02
1827 2394 0.737367 CGCTCTGATTCTGCCGTGAA 60.737 55.000 0.00 0.00 0.00 3.18
1828 2395 1.153765 CGCTCTGATTCTGCCGTGA 60.154 57.895 0.00 0.00 0.00 4.35
1829 2396 1.144565 CTCGCTCTGATTCTGCCGTG 61.145 60.000 0.00 0.00 0.00 4.94
1830 2397 1.140589 CTCGCTCTGATTCTGCCGT 59.859 57.895 0.00 0.00 0.00 5.68
1831 2398 2.236382 GCTCGCTCTGATTCTGCCG 61.236 63.158 0.00 0.00 0.00 5.69
1832 2399 1.152989 CTGCTCGCTCTGATTCTGCC 61.153 60.000 0.00 0.00 0.00 4.85
1833 2400 1.764180 GCTGCTCGCTCTGATTCTGC 61.764 60.000 0.00 0.00 35.14 4.26
1834 2401 0.459759 TGCTGCTCGCTCTGATTCTG 60.460 55.000 0.00 0.00 40.11 3.02
1835 2402 0.464870 ATGCTGCTCGCTCTGATTCT 59.535 50.000 0.00 0.00 40.11 2.40
1836 2403 2.145958 TATGCTGCTCGCTCTGATTC 57.854 50.000 0.00 0.00 40.11 2.52
1837 2404 2.036862 TGATATGCTGCTCGCTCTGATT 59.963 45.455 0.00 0.00 40.11 2.57
1838 2405 1.617357 TGATATGCTGCTCGCTCTGAT 59.383 47.619 0.00 0.00 40.11 2.90
1839 2406 1.035139 TGATATGCTGCTCGCTCTGA 58.965 50.000 0.00 0.00 40.11 3.27
1840 2407 1.727335 CATGATATGCTGCTCGCTCTG 59.273 52.381 0.00 0.00 40.11 3.35
1841 2408 1.343789 ACATGATATGCTGCTCGCTCT 59.656 47.619 0.00 0.00 40.11 4.09
1842 2409 1.725706 GACATGATATGCTGCTCGCTC 59.274 52.381 0.00 0.00 40.11 5.03
1843 2410 1.343789 AGACATGATATGCTGCTCGCT 59.656 47.619 0.00 0.00 40.11 4.93
1844 2411 1.793258 AGACATGATATGCTGCTCGC 58.207 50.000 0.00 0.00 39.77 5.03
1845 2412 3.387397 TGAAGACATGATATGCTGCTCG 58.613 45.455 0.00 0.00 0.00 5.03
1858 2425 2.715749 TGATTCGGCCATGAAGACAT 57.284 45.000 2.24 0.00 37.19 3.06
1859 2426 2.488204 TTGATTCGGCCATGAAGACA 57.512 45.000 2.24 1.53 0.00 3.41
1860 2427 2.749621 ACTTTGATTCGGCCATGAAGAC 59.250 45.455 2.24 0.00 0.00 3.01
1861 2428 2.749076 CACTTTGATTCGGCCATGAAGA 59.251 45.455 2.24 0.00 0.00 2.87
1862 2429 3.141002 CACTTTGATTCGGCCATGAAG 57.859 47.619 2.24 0.07 0.00 3.02
2691 3258 5.363101 GGATATTCTGCTCACTGTGATTCA 58.637 41.667 11.45 11.12 0.00 2.57
2692 3259 4.754114 GGGATATTCTGCTCACTGTGATTC 59.246 45.833 11.45 7.06 0.00 2.52
2693 3260 4.712476 GGGATATTCTGCTCACTGTGATT 58.288 43.478 11.45 0.00 0.00 2.57
2694 3261 3.244009 CGGGATATTCTGCTCACTGTGAT 60.244 47.826 11.45 0.00 0.00 3.06
2695 3262 2.101415 CGGGATATTCTGCTCACTGTGA 59.899 50.000 10.50 10.50 0.00 3.58
2696 3263 2.159043 ACGGGATATTCTGCTCACTGTG 60.159 50.000 0.17 0.17 0.00 3.66
2697 3264 2.101582 GACGGGATATTCTGCTCACTGT 59.898 50.000 0.00 0.00 0.00 3.55
2698 3265 2.363680 AGACGGGATATTCTGCTCACTG 59.636 50.000 0.00 0.00 0.00 3.66
2699 3266 2.672098 AGACGGGATATTCTGCTCACT 58.328 47.619 0.00 0.00 0.00 3.41
2700 3267 3.181475 TGAAGACGGGATATTCTGCTCAC 60.181 47.826 0.00 0.00 29.36 3.51
2701 3268 3.031013 TGAAGACGGGATATTCTGCTCA 58.969 45.455 0.00 0.00 29.36 4.26
2702 3269 3.385577 GTGAAGACGGGATATTCTGCTC 58.614 50.000 0.00 0.00 29.36 4.26
2703 3270 2.223829 CGTGAAGACGGGATATTCTGCT 60.224 50.000 0.00 0.00 42.18 4.24
2704 3271 2.128035 CGTGAAGACGGGATATTCTGC 58.872 52.381 0.00 0.00 42.18 4.26
2715 3282 1.413767 CTGATTCGGCCGTGAAGACG 61.414 60.000 27.15 5.15 45.67 4.18
2716 3283 0.108804 TCTGATTCGGCCGTGAAGAC 60.109 55.000 27.15 11.64 0.00 3.01
2717 3284 0.173481 CTCTGATTCGGCCGTGAAGA 59.827 55.000 27.15 20.94 0.00 2.87
2718 3285 0.108615 ACTCTGATTCGGCCGTGAAG 60.109 55.000 27.15 17.96 0.00 3.02
2719 3286 0.389817 CACTCTGATTCGGCCGTGAA 60.390 55.000 27.15 14.07 0.00 3.18
2720 3287 1.215382 CACTCTGATTCGGCCGTGA 59.785 57.895 27.15 15.92 0.00 4.35
2721 3288 0.803768 CTCACTCTGATTCGGCCGTG 60.804 60.000 27.15 13.64 0.00 4.94
2722 3289 1.513158 CTCACTCTGATTCGGCCGT 59.487 57.895 27.15 6.47 0.00 5.68
2723 3290 1.880340 GCTCACTCTGATTCGGCCG 60.880 63.158 22.12 22.12 0.00 6.13
2724 3291 0.809241 CAGCTCACTCTGATTCGGCC 60.809 60.000 0.00 0.00 36.19 6.13
2734 3301 0.390860 ACGGGATATGCAGCTCACTC 59.609 55.000 0.00 0.00 0.00 3.51
2742 3309 3.659850 CGTGAAGACGGGATATGCA 57.340 52.632 0.00 0.00 42.18 3.96
2763 3330 0.875040 ATGCTGCTCGCTCTGATTCG 60.875 55.000 0.00 0.00 40.11 3.34
2798 3365 2.024319 GCTGCTCGCTCTGTTTCGT 61.024 57.895 0.00 0.00 35.14 3.85
2803 3370 1.447489 GACATGCTGCTCGCTCTGT 60.447 57.895 0.00 4.24 40.11 3.41
2819 3824 2.430382 TTCGGCCGTGAAGACAGGAC 62.430 60.000 27.15 0.00 34.32 3.85
2920 3925 1.568504 TATCCCTTTCAGACCGCTGT 58.431 50.000 0.00 0.00 42.84 4.40
3074 4079 0.898320 ACTTGGATCTCCTCGTGTGG 59.102 55.000 0.00 0.00 36.82 4.17
3699 4704 2.158813 CCACCATAGTAAGGTTCGCCAT 60.159 50.000 0.00 0.00 37.23 4.40
4406 5412 5.104693 TGAGATTTCCAGTAAAAGGCGGATA 60.105 40.000 0.00 0.00 0.00 2.59
4470 5476 9.661954 ACCTTAACCATCTGAAGATAGAATCTA 57.338 33.333 0.00 0.00 39.08 1.98
4656 5662 4.023193 GCTTTTGGTCGAGAAAAAGGATCA 60.023 41.667 23.71 0.00 41.56 2.92
4814 5820 7.925043 TTACACATTGAAATAACCATACCGT 57.075 32.000 0.00 0.00 0.00 4.83
4815 5821 8.616942 TCATTACACATTGAAATAACCATACCG 58.383 33.333 0.00 0.00 0.00 4.02
5582 6590 2.628657 GGACCTCGTGGAGTAATATGCT 59.371 50.000 11.17 0.00 37.04 3.79
5684 6692 1.741706 CCATTCATAGCATCGGCATCC 59.258 52.381 0.00 0.00 44.61 3.51
6169 7177 5.531287 ACAAAGGTAGGTAAAAGAACTGCAG 59.469 40.000 13.48 13.48 0.00 4.41
6223 7233 7.611213 AATTACCCAAGATACGCATATAAGC 57.389 36.000 0.00 0.00 0.00 3.09
6224 7234 9.214957 TCAAATTACCCAAGATACGCATATAAG 57.785 33.333 0.00 0.00 0.00 1.73
6462 7559 4.872691 CGAAGCTCACTGATTCAACCTTAT 59.127 41.667 0.00 0.00 40.79 1.73
6591 7688 8.506437 TGCAGATACAACTTTATTCTTGAAGTG 58.494 33.333 0.00 0.00 36.31 3.16
6644 8000 7.224362 CACTATTGAATGTTGAAGCAAAACCAA 59.776 33.333 0.00 0.00 0.00 3.67
6654 8010 5.388994 CGTGTACGCACTATTGAATGTTGAA 60.389 40.000 7.29 0.00 43.16 2.69
7096 8454 6.935240 AGCATAGGGTAACATAGCAGAATA 57.065 37.500 0.00 0.00 35.57 1.75
7258 8616 3.979501 ATTCTGCATCCCTAAACCCAT 57.020 42.857 0.00 0.00 0.00 4.00
7553 9142 7.399245 AAAGCAAGACCAAAGTTTGTAACTA 57.601 32.000 14.36 0.00 41.91 2.24
7979 9570 5.419788 TCAGTAAGCCGTTTATACCTTCTCA 59.580 40.000 0.00 0.00 0.00 3.27
8289 9880 8.231692 TGAGAACTGTCACAATAATGGAAAAA 57.768 30.769 0.00 0.00 0.00 1.94
8340 10027 2.648838 AGGGGAGGGTGAGATCTTTTT 58.351 47.619 0.00 0.00 0.00 1.94
8401 10088 6.944290 AGGTTTGGTGGTTAACTAATTAGGTC 59.056 38.462 16.73 0.00 0.00 3.85
8433 10120 6.639563 TGCAGAGTAAGTGTAATAGCATTGA 58.360 36.000 0.00 0.00 0.00 2.57
8498 10217 7.907389 CCATCAAGGTAGCATAATCTAACCTA 58.093 38.462 0.00 0.00 0.00 3.08
8914 10744 2.198827 AGAAACATGGCAATCACGGA 57.801 45.000 0.00 0.00 0.00 4.69
8951 10781 0.110010 GCAAGGAAGAACGCTTGAGC 60.110 55.000 0.00 0.00 33.61 4.26
8997 10830 3.561120 TTTGTTGCCCGGCCTCGAT 62.561 57.895 7.03 0.00 39.00 3.59
9034 10867 3.243367 GGTTGTATGTTGCTTGAAGTGCA 60.243 43.478 0.00 0.00 38.80 4.57
9269 11106 4.284860 TGAGATGCGGATCGGGCG 62.285 66.667 11.52 0.00 33.34 6.13
9365 11207 5.137403 CGTGATTAACTCCTTCAAACAACG 58.863 41.667 0.00 0.00 0.00 4.10
9371 11213 3.938963 GGATGCGTGATTAACTCCTTCAA 59.061 43.478 0.00 0.00 0.00 2.69
9382 11224 2.558378 CACAGATCAGGATGCGTGATT 58.442 47.619 0.00 0.00 38.77 2.57
9533 11375 2.775032 TTTCTTCCCTTCGACGCGGG 62.775 60.000 12.47 13.92 42.05 6.13
9592 11434 6.899393 ATCAACAACAACCAACACTCATAT 57.101 33.333 0.00 0.00 0.00 1.78
9665 11508 8.899427 AGGAAATCACAACATATATGACAGAG 57.101 34.615 19.63 7.18 0.00 3.35
9727 11570 1.416401 GGGAGTGAAGTTGTGGAGTGA 59.584 52.381 0.00 0.00 0.00 3.41
9728 11571 1.873903 CGGGAGTGAAGTTGTGGAGTG 60.874 57.143 0.00 0.00 0.00 3.51
9729 11572 0.393077 CGGGAGTGAAGTTGTGGAGT 59.607 55.000 0.00 0.00 0.00 3.85
9730 11573 0.320771 CCGGGAGTGAAGTTGTGGAG 60.321 60.000 0.00 0.00 0.00 3.86
9731 11574 0.761323 TCCGGGAGTGAAGTTGTGGA 60.761 55.000 0.00 0.00 0.00 4.02
9732 11575 0.320771 CTCCGGGAGTGAAGTTGTGG 60.321 60.000 16.15 0.00 0.00 4.17
9733 11576 0.951040 GCTCCGGGAGTGAAGTTGTG 60.951 60.000 24.30 0.00 31.39 3.33
9734 11577 1.371558 GCTCCGGGAGTGAAGTTGT 59.628 57.895 24.30 0.00 31.39 3.32
9735 11578 0.671781 CTGCTCCGGGAGTGAAGTTG 60.672 60.000 24.30 0.00 31.39 3.16
9736 11579 0.832135 TCTGCTCCGGGAGTGAAGTT 60.832 55.000 24.30 0.00 32.53 2.66
9737 11580 0.616111 ATCTGCTCCGGGAGTGAAGT 60.616 55.000 24.30 7.50 32.53 3.01
9738 11581 0.179089 CATCTGCTCCGGGAGTGAAG 60.179 60.000 24.30 18.40 32.53 3.02
9739 11582 1.617018 CCATCTGCTCCGGGAGTGAA 61.617 60.000 24.30 10.79 32.53 3.18
9740 11583 2.060383 CCATCTGCTCCGGGAGTGA 61.060 63.158 24.30 21.23 32.53 3.41
9778 11621 4.351054 CCAGGAAACAGGCGCCCT 62.351 66.667 26.15 9.15 0.00 5.19
9799 11642 2.233654 CGAAATCCCGAGAGCAGCG 61.234 63.158 0.00 0.00 0.00 5.18
9800 11643 2.529619 GCGAAATCCCGAGAGCAGC 61.530 63.158 0.00 0.00 0.00 5.25
9801 11644 2.233654 CGCGAAATCCCGAGAGCAG 61.234 63.158 0.00 0.00 0.00 4.24
9802 11645 2.202743 CGCGAAATCCCGAGAGCA 60.203 61.111 0.00 0.00 0.00 4.26
9803 11646 2.962253 CCGCGAAATCCCGAGAGC 60.962 66.667 8.23 0.00 0.00 4.09
9804 11647 1.299468 CTCCGCGAAATCCCGAGAG 60.299 63.158 8.23 0.00 0.00 3.20
9805 11648 2.805546 CTCCGCGAAATCCCGAGA 59.194 61.111 8.23 0.00 0.00 4.04
9806 11649 2.962253 GCTCCGCGAAATCCCGAG 60.962 66.667 8.23 4.58 0.00 4.63
9807 11650 3.458163 AGCTCCGCGAAATCCCGA 61.458 61.111 8.23 0.00 0.00 5.14
9808 11651 3.264897 CAGCTCCGCGAAATCCCG 61.265 66.667 8.23 0.00 0.00 5.14
9809 11652 2.897350 CCAGCTCCGCGAAATCCC 60.897 66.667 8.23 0.00 0.00 3.85
9810 11653 2.125106 ACCAGCTCCGCGAAATCC 60.125 61.111 8.23 0.00 0.00 3.01
9811 11654 2.464459 CCACCAGCTCCGCGAAATC 61.464 63.158 8.23 0.00 0.00 2.17
9812 11655 2.436646 CCACCAGCTCCGCGAAAT 60.437 61.111 8.23 0.00 0.00 2.17
9813 11656 3.171828 TTCCACCAGCTCCGCGAAA 62.172 57.895 8.23 0.00 0.00 3.46
9814 11657 3.621805 TTCCACCAGCTCCGCGAA 61.622 61.111 8.23 0.00 0.00 4.70
9815 11658 4.373116 GTTCCACCAGCTCCGCGA 62.373 66.667 8.23 0.00 0.00 5.87
9816 11659 4.680237 TGTTCCACCAGCTCCGCG 62.680 66.667 0.00 0.00 0.00 6.46
9817 11660 2.281484 TTGTTCCACCAGCTCCGC 60.281 61.111 0.00 0.00 0.00 5.54
9818 11661 2.317609 CGTTGTTCCACCAGCTCCG 61.318 63.158 0.00 0.00 0.00 4.63
9819 11662 0.534203 TTCGTTGTTCCACCAGCTCC 60.534 55.000 0.00 0.00 0.00 4.70
9820 11663 0.586802 GTTCGTTGTTCCACCAGCTC 59.413 55.000 0.00 0.00 0.00 4.09
9821 11664 0.107410 TGTTCGTTGTTCCACCAGCT 60.107 50.000 0.00 0.00 0.00 4.24
9822 11665 0.307760 CTGTTCGTTGTTCCACCAGC 59.692 55.000 0.00 0.00 0.00 4.85
9823 11666 0.944386 CCTGTTCGTTGTTCCACCAG 59.056 55.000 0.00 0.00 0.00 4.00
9824 11667 0.464735 CCCTGTTCGTTGTTCCACCA 60.465 55.000 0.00 0.00 0.00 4.17
9825 11668 0.464916 ACCCTGTTCGTTGTTCCACC 60.465 55.000 0.00 0.00 0.00 4.61
9826 11669 0.942252 GACCCTGTTCGTTGTTCCAC 59.058 55.000 0.00 0.00 0.00 4.02
9827 11670 0.834612 AGACCCTGTTCGTTGTTCCA 59.165 50.000 0.00 0.00 0.00 3.53
9828 11671 1.963172 AAGACCCTGTTCGTTGTTCC 58.037 50.000 0.00 0.00 0.00 3.62
9829 11672 4.514066 ACATTAAGACCCTGTTCGTTGTTC 59.486 41.667 0.00 0.00 0.00 3.18
9830 11673 4.457466 ACATTAAGACCCTGTTCGTTGTT 58.543 39.130 0.00 0.00 0.00 2.83
9831 11674 4.081322 ACATTAAGACCCTGTTCGTTGT 57.919 40.909 0.00 0.00 0.00 3.32
9832 11675 4.090930 CGTACATTAAGACCCTGTTCGTTG 59.909 45.833 0.00 0.00 31.66 4.10
9833 11676 4.022068 TCGTACATTAAGACCCTGTTCGTT 60.022 41.667 5.48 0.00 35.85 3.85
9834 11677 3.507233 TCGTACATTAAGACCCTGTTCGT 59.493 43.478 5.48 0.00 35.85 3.85
9835 11678 4.100707 TCGTACATTAAGACCCTGTTCG 57.899 45.455 0.00 0.41 35.75 3.95
9836 11679 6.700520 CCTATTCGTACATTAAGACCCTGTTC 59.299 42.308 0.00 0.00 0.00 3.18
9837 11680 6.579865 CCTATTCGTACATTAAGACCCTGTT 58.420 40.000 0.00 0.00 0.00 3.16
9838 11681 5.452917 GCCTATTCGTACATTAAGACCCTGT 60.453 44.000 0.00 0.00 0.00 4.00
9839 11682 4.989168 GCCTATTCGTACATTAAGACCCTG 59.011 45.833 0.00 0.00 0.00 4.45
9840 11683 4.900054 AGCCTATTCGTACATTAAGACCCT 59.100 41.667 0.00 0.00 0.00 4.34
9841 11684 5.010820 AGAGCCTATTCGTACATTAAGACCC 59.989 44.000 0.00 0.00 0.00 4.46
9842 11685 6.086785 AGAGCCTATTCGTACATTAAGACC 57.913 41.667 0.00 0.00 0.00 3.85
9843 11686 7.380065 CAGAAGAGCCTATTCGTACATTAAGAC 59.620 40.741 0.00 0.00 0.00 3.01
9844 11687 7.284716 TCAGAAGAGCCTATTCGTACATTAAGA 59.715 37.037 0.00 0.00 0.00 2.10
9845 11688 7.380065 GTCAGAAGAGCCTATTCGTACATTAAG 59.620 40.741 0.00 0.00 0.00 1.85
9846 11689 7.068348 AGTCAGAAGAGCCTATTCGTACATTAA 59.932 37.037 8.76 0.00 0.00 1.40
9847 11690 6.546403 AGTCAGAAGAGCCTATTCGTACATTA 59.454 38.462 8.76 0.00 0.00 1.90
9848 11691 5.361285 AGTCAGAAGAGCCTATTCGTACATT 59.639 40.000 8.76 0.00 0.00 2.71
9849 11692 4.890581 AGTCAGAAGAGCCTATTCGTACAT 59.109 41.667 8.76 0.00 0.00 2.29
9850 11693 4.270834 AGTCAGAAGAGCCTATTCGTACA 58.729 43.478 8.76 0.00 0.00 2.90
9851 11694 4.904253 AGTCAGAAGAGCCTATTCGTAC 57.096 45.455 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.