AutoCloner

Multiple sequence alignment - TraesCS1D01G417300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G417300	chr1D	100.000	4569	0	0	1	4569	475602722	475607290	0.000000e+00	8438.0
1	TraesCS1D01G417300	chr1D	79.126	206	28	10	3825	4018	425670669	425670871	1.330000e-25	128.0
2	TraesCS1D01G417300	chr1D	88.750	80	7	2	1719	1798	287466132	287466209	3.760000e-16	97.1
3	TraesCS1D01G417300	chr1A	90.660	1242	66	23	1815	3030	571345797	571347014	0.000000e+00	1605.0
4	TraesCS1D01G417300	chr1A	84.941	1607	66	62	1	1508	571344048	571345577	0.000000e+00	1465.0
5	TraesCS1D01G417300	chr1A	87.883	652	44	18	3144	3766	571347266	571347911	0.000000e+00	734.0
6	TraesCS1D01G417300	chr1B	81.638	1514	80	81	47	1508	661558541	661559908	0.000000e+00	1074.0
7	TraesCS1D01G417300	chr1B	94.413	698	33	5	2342	3034	661560754	661561450	0.000000e+00	1068.0
8	TraesCS1D01G417300	chr1B	87.582	612	28	16	3358	3965	661561837	661562404	0.000000e+00	665.0
9	TraesCS1D01G417300	chr1B	86.751	634	37	23	3159	3766	661561626	661562238	0.000000e+00	662.0
10	TraesCS1D01G417300	chr1B	91.477	352	28	1	4220	4569	661562667	661563018	2.470000e-132	483.0
11	TraesCS1D01G417300	chr1B	89.716	282	19	5	2011	2287	661560481	661560757	7.270000e-93	351.0
12	TraesCS1D01G417300	chr1B	94.964	139	5	1	1819	1955	661560149	661560287	2.770000e-52	217.0
13	TraesCS1D01G417300	chr1B	97.222	36	0	1	1968	2002	661560314	661560349	4.940000e-05	60.2
14	TraesCS1D01G417300	chr7A	89.326	178	13	4	3830	4004	516081	516255	7.700000e-53	219.0
15	TraesCS1D01G417300	chr7D	89.820	167	15	2	4405	4569	629437335	629437169	3.580000e-51	213.0
16	TraesCS1D01G417300	chr7D	75.949	316	67	6	4133	4446	614281871	614281563	2.200000e-33	154.0
17	TraesCS1D01G417300	chr7D	75.635	197	24	16	3825	4004	563336117	563335928	4.900000e-10	76.8
18	TraesCS1D01G417300	chr6B	78.968	252	50	3	4133	4383	279051071	279051320	7.860000e-38	169.0
19	TraesCS1D01G417300	chr6B	84.932	73	9	2	3863	3933	33405311	33405239	6.340000e-09	73.1
20	TraesCS1D01G417300	chr6B	84.932	73	9	2	3863	3933	33412926	33412854	6.340000e-09	73.1
21	TraesCS1D01G417300	chr6B	84.932	73	9	2	3863	3933	33420537	33420465	6.340000e-09	73.1
22	TraesCS1D01G417300	chr2B	87.786	131	12	1	4322	4448	6527909	6528039	2.850000e-32	150.0
23	TraesCS1D01G417300	chr5B	79.902	204	28	4	3820	4012	180910694	180910895	2.220000e-28	137.0
24	TraesCS1D01G417300	chrUn	76.955	243	53	2	4133	4374	124668403	124668163	7.970000e-28	135.0
25	TraesCS1D01G417300	chr4A	79.532	171	24	3	3845	4004	740627163	740626993	1.340000e-20	111.0
26	TraesCS1D01G417300	chr4B	78.010	191	30	6	3825	4004	387439582	387439393	4.830000e-20	110.0
27	TraesCS1D01G417300	chr4B	77.714	175	25	10	1245	1412	14181581	14181414	1.350000e-15	95.3
28	TraesCS1D01G417300	chr3D	89.655	87	8	1	1712	1798	64483354	64483269	4.830000e-20	110.0
29	TraesCS1D01G417300	chr3D	84.000	100	6	1	1709	1798	527148235	527148334	2.260000e-13	87.9
30	TraesCS1D01G417300	chr3D	94.545	55	3	0	1745	1799	375212320	375212266	8.140000e-13	86.1
31	TraesCS1D01G417300	chr3A	89.412	85	8	1	1708	1792	672085986	672085903	6.250000e-19	106.0
32	TraesCS1D01G417300	chr3A	96.364	55	2	0	1744	1798	550440513	550440459	1.750000e-14	91.6
33	TraesCS1D01G417300	chr2D	81.197	117	17	4	3825	3937	70020118	70020003	6.300000e-14	89.8
34	TraesCS1D01G417300	chr2D	86.842	76	7	3	3927	4000	107692786	107692860	1.050000e-11	82.4
35	TraesCS1D01G417300	chr7B	84.783	92	9	5	1709	1798	601110830	601110918	2.260000e-13	87.9
36	TraesCS1D01G417300	chr5A	78.378	148	23	3	3866	4004	292858328	292858181	2.260000e-13	87.9
37	TraesCS1D01G417300	chr6D	82.178	101	13	5	1703	1799	77674498	77674399	1.050000e-11	82.4
38	TraesCS1D01G417300	chr5D	84.270	89	6	8	1712	1798	64306503	64306585	3.790000e-11	80.5
39	TraesCS1D01G417300	chr5D	89.286	56	3	3	3954	4008	439216626	439216573	2.950000e-07	67.6
40	TraesCS1D01G417300	chr2A	85.333	75	4	5	3939	4011	11648528	11648459	2.280000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G417300	chr1D	475602722	475607290	4568	False	8438.000	8438	100.000000	1	4569	1	chr1D.!!$F3	4568
1	TraesCS1D01G417300	chr1A	571344048	571347911	3863	False	1268.000	1605	87.828000	1	3766	3	chr1A.!!$F1	3765
2	TraesCS1D01G417300	chr1B	661558541	661563018	4477	False	572.525	1074	90.470375	47	4569	8	chr1B.!!$F1	4522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
126	137	0.320771	ACACCAGCTAGGCGTCAAAG	60.321	55.0	43.14	2.77	F
1174	1329	0.116143	TTTCTGATGGGGTTTGGGGG	59.884	55.0	0.00	5.40	F
1599	1791	0.039035	TGGCCCCATTGTACAGGAAC	59.961	55.0	0.00	3.62	F
3141	3609	0.034960	TATTTGGCTAACCGCTGGCA	60.035	50.0	39.70	4.92	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1582	1774	0.039035	TGGTTCCTGTACAATGGGGC	59.961	55.0	0.00	0.00	0.00	5.80	R
2403	2778	0.162933	ATTGTCACTAAACGTGCGCG	59.837	50.0	19.78	19.78	43.46	6.86	R
3304	3842	0.179051	ACCGTGGCTGGTTTCGTTTA	60.179	50.0	0.00	0.00	39.99	2.01	R
4338	5023	0.035056	CCTAGGTCTGGCCCTTGTTG	60.035	60.0	0.00	0.00	38.26	3.33	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	5.399013	GCATACATTAAAAAGTTGGAGCGT	58.601	37.500	0.00	0.00	0.00	5.07
56	57	2.123854	ATAGGTCGCTCGGAGGCA	60.124	61.111	7.20	0.00	0.00	4.75
66	67	0.801251	CTCGGAGGCAGCTCAAAAAG	59.199	55.000	0.00	0.00	0.00	2.27
68	69	0.954452	CGGAGGCAGCTCAAAAAGTT	59.046	50.000	0.00	0.00	0.00	2.66
69	70	1.068954	CGGAGGCAGCTCAAAAAGTTC	60.069	52.381	0.00	0.00	0.00	3.01
101	112	2.668212	CGGCGGCAAACAGGAAGA	60.668	61.111	10.53	0.00	0.00	2.87
126	137	0.320771	ACACCAGCTAGGCGTCAAAG	60.321	55.000	0.00	0.00	43.14	2.77
131	142	2.264794	CTAGGCGTCAAAGGCGGT	59.735	61.111	0.00	0.00	41.99	5.68
232	269	3.692406	ACGAGGAGGGTCGGCAAC	61.692	66.667	0.00	0.00	44.53	4.17
282	319	0.387878	GTCACTCACTCACTCGGCAG	60.388	60.000	0.00	0.00	0.00	4.85
283	320	0.823769	TCACTCACTCACTCGGCAGT	60.824	55.000	0.00	0.00	0.00	4.40
429	479	4.764172	ACGGGAGTACTACACTACTACTG	58.236	47.826	7.57	0.00	44.60	2.74
438	488	2.100989	ACACTACTACTGCTGCTACCC	58.899	52.381	0.00	0.00	0.00	3.69
475	541	2.277404	GAGGTCCGGAGCCTCTCT	59.723	66.667	30.43	16.39	46.71	3.10
479	545	1.826487	GTCCGGAGCCTCTCTCTCC	60.826	68.421	3.06	0.00	45.12	3.71
480	546	2.520741	CCGGAGCCTCTCTCTCCC	60.521	72.222	0.00	0.00	45.66	4.30
481	547	2.600731	CGGAGCCTCTCTCTCCCT	59.399	66.667	3.70	0.00	45.66	4.20
482	548	1.528309	CGGAGCCTCTCTCTCCCTC	60.528	68.421	3.70	0.00	45.66	4.30
483	549	1.152546	GGAGCCTCTCTCTCCCTCC	60.153	68.421	0.00	0.00	43.32	4.30
484	550	1.152546	GAGCCTCTCTCTCCCTCCC	60.153	68.421	0.00	0.00	38.78	4.30
485	551	1.625565	AGCCTCTCTCTCCCTCCCT	60.626	63.158	0.00	0.00	0.00	4.20
486	552	1.152546	GCCTCTCTCTCCCTCCCTC	60.153	68.421	0.00	0.00	0.00	4.30
487	553	1.541672	CCTCTCTCTCCCTCCCTCC	59.458	68.421	0.00	0.00	0.00	4.30
488	554	1.541672	CTCTCTCTCCCTCCCTCCC	59.458	68.421	0.00	0.00	0.00	4.30
489	555	0.998945	CTCTCTCTCCCTCCCTCCCT	60.999	65.000	0.00	0.00	0.00	4.20
510	576	0.736636	CATGGCATTGCGTGTGATCT	59.263	50.000	0.00	0.00	0.00	2.75
522	588	4.377708	TGATCTGCTGCGTGGCGT	62.378	61.111	0.00	0.00	34.52	5.68
538	604	2.184322	GTGCGCCTGCTACTGCTA	59.816	61.111	4.18	0.00	43.34	3.49
539	605	1.880340	GTGCGCCTGCTACTGCTAG	60.880	63.158	4.18	0.00	43.34	3.42
540	606	2.279784	GCGCCTGCTACTGCTAGG	60.280	66.667	0.00	0.00	40.48	3.02
542	608	1.517832	CGCCTGCTACTGCTAGGTT	59.482	57.895	0.00	0.00	38.69	3.50
543	609	0.807667	CGCCTGCTACTGCTAGGTTG	60.808	60.000	0.00	0.00	38.69	3.77
545	611	0.539051	CCTGCTACTGCTAGGTTGCT	59.461	55.000	6.99	0.00	38.40	3.91
547	613	2.616510	CCTGCTACTGCTAGGTTGCTTT	60.617	50.000	6.99	0.00	38.40	3.51
553	619	0.401738	TGCTAGGTTGCTTTGCTCCT	59.598	50.000	10.30	10.30	37.37	3.69
562	628	2.664851	TTTGCTCCTCCACGTGCG	60.665	61.111	10.91	3.66	0.00	5.34
627	693	2.937959	CTTCCTCCCTCCCTCCCTCG	62.938	70.000	0.00	0.00	0.00	4.63
735	834	4.504916	CAGGCGAGGCGAGGTGAG	62.505	72.222	0.00	0.00	0.00	3.51
1174	1329	0.116143	TTTCTGATGGGGTTTGGGGG	59.884	55.000	0.00	0.00	0.00	5.40
1175	1330	2.364186	CTGATGGGGTTTGGGGGC	60.364	66.667	0.00	0.00	0.00	5.80
1176	1331	4.374584	TGATGGGGTTTGGGGGCG	62.375	66.667	0.00	0.00	0.00	6.13
1178	1333	3.897681	GATGGGGTTTGGGGGCGTT	62.898	63.158	0.00	0.00	0.00	4.84
1181	1336	4.926162	GGGTTTGGGGGCGTTGGT	62.926	66.667	0.00	0.00	0.00	3.67
1182	1337	2.840572	GGTTTGGGGGCGTTGGTT	60.841	61.111	0.00	0.00	0.00	3.67
1183	1338	2.419620	GTTTGGGGGCGTTGGTTG	59.580	61.111	0.00	0.00	0.00	3.77
1184	1339	3.541713	TTTGGGGGCGTTGGTTGC	61.542	61.111	0.00	0.00	0.00	4.17
1185	1340	4.841617	TTGGGGGCGTTGGTTGCA	62.842	61.111	0.00	0.00	0.00	4.08
1330	1495	2.491298	TCTGTTCTACTCTGCTCTGCTG	59.509	50.000	0.00	0.00	0.00	4.41
1331	1496	1.547820	TGTTCTACTCTGCTCTGCTGG	59.452	52.381	0.00	0.00	0.00	4.85
1348	1513	2.263741	GGGTTCTGTGCTGTGCTGG	61.264	63.158	0.00	0.00	0.00	4.85
1349	1514	1.526917	GGTTCTGTGCTGTGCTGGT	60.527	57.895	0.00	0.00	0.00	4.00
1350	1515	1.103398	GGTTCTGTGCTGTGCTGGTT	61.103	55.000	0.00	0.00	0.00	3.67
1351	1516	1.593196	GTTCTGTGCTGTGCTGGTTA	58.407	50.000	0.00	0.00	0.00	2.85
1352	1517	2.154462	GTTCTGTGCTGTGCTGGTTAT	58.846	47.619	0.00	0.00	0.00	1.89
1353	1518	3.334691	GTTCTGTGCTGTGCTGGTTATA	58.665	45.455	0.00	0.00	0.00	0.98
1354	1519	3.694043	TCTGTGCTGTGCTGGTTATAA	57.306	42.857	0.00	0.00	0.00	0.98
1355	1520	3.599343	TCTGTGCTGTGCTGGTTATAAG	58.401	45.455	0.00	0.00	0.00	1.73
1356	1521	3.007940	TCTGTGCTGTGCTGGTTATAAGT	59.992	43.478	0.00	0.00	0.00	2.24
1357	1522	3.750371	TGTGCTGTGCTGGTTATAAGTT	58.250	40.909	0.00	0.00	0.00	2.66
1358	1523	4.141287	TGTGCTGTGCTGGTTATAAGTTT	58.859	39.130	0.00	0.00	0.00	2.66
1359	1524	4.023279	TGTGCTGTGCTGGTTATAAGTTTG	60.023	41.667	0.00	0.00	0.00	2.93
1360	1525	4.215399	GTGCTGTGCTGGTTATAAGTTTGA	59.785	41.667	0.00	0.00	0.00	2.69
1361	1526	5.009631	TGCTGTGCTGGTTATAAGTTTGAT	58.990	37.500	0.00	0.00	0.00	2.57
1362	1527	5.106197	TGCTGTGCTGGTTATAAGTTTGATG	60.106	40.000	0.00	0.00	0.00	3.07
1363	1528	5.309323	TGTGCTGGTTATAAGTTTGATGC	57.691	39.130	0.00	0.00	0.00	3.91
1364	1529	4.764308	TGTGCTGGTTATAAGTTTGATGCA	59.236	37.500	0.00	0.00	0.00	3.96
1365	1530	5.106197	TGTGCTGGTTATAAGTTTGATGCAG	60.106	40.000	0.00	0.00	0.00	4.41
1366	1531	5.009631	TGCTGGTTATAAGTTTGATGCAGT	58.990	37.500	0.00	0.00	0.00	4.40
1367	1532	5.106197	TGCTGGTTATAAGTTTGATGCAGTG	60.106	40.000	0.00	0.00	0.00	3.66
1368	1533	5.309323	TGGTTATAAGTTTGATGCAGTGC	57.691	39.130	8.58	8.58	0.00	4.40
1385	1550	2.093973	AGTGCGAGAGATTCATTTCGGT	60.094	45.455	0.00	0.00	33.89	4.69
1400	1568	7.915293	TCATTTCGGTCAGTACAAAATACAT	57.085	32.000	0.00	0.00	0.00	2.29
1412	1580	9.354673	CAGTACAAAATACATATTCCCCATTCT	57.645	33.333	0.00	0.00	0.00	2.40
1420	1588	0.620556	ATTCCCCATTCTGCGTGTCT	59.379	50.000	0.00	0.00	0.00	3.41
1425	1593	1.609061	CCCATTCTGCGTGTCTCTTGT	60.609	52.381	0.00	0.00	0.00	3.16
1429	1597	4.498009	CCATTCTGCGTGTCTCTTGTTTTT	60.498	41.667	0.00	0.00	0.00	1.94
1430	1598	3.673746	TCTGCGTGTCTCTTGTTTTTG	57.326	42.857	0.00	0.00	0.00	2.44
1431	1599	3.006940	TCTGCGTGTCTCTTGTTTTTGT	58.993	40.909	0.00	0.00	0.00	2.83
1443	1611	5.448438	TCTTGTTTTTGTTGCTGCGTATAG	58.552	37.500	0.00	0.00	0.00	1.31
1471	1640	0.178992	ATGTGGGGGTGGATTATGCG	60.179	55.000	0.00	0.00	0.00	4.73
1472	1641	2.193536	GTGGGGGTGGATTATGCGC	61.194	63.158	0.00	0.00	0.00	6.09
1473	1642	2.194597	GGGGGTGGATTATGCGCA	59.805	61.111	14.96	14.96	0.00	6.09
1474	1643	1.898574	GGGGGTGGATTATGCGCAG	60.899	63.158	18.32	0.00	0.00	5.18
1475	1644	1.898574	GGGGTGGATTATGCGCAGG	60.899	63.158	18.32	0.00	0.00	4.85
1476	1645	2.555547	GGGTGGATTATGCGCAGGC	61.556	63.158	18.32	4.54	40.52	4.85
1504	1673	4.084223	GGCTGTGTGCATTTTCTGAATTTG	60.084	41.667	0.00	0.00	45.15	2.32
1509	1701	5.049167	TGTGCATTTTCTGAATTTGACACC	58.951	37.500	15.86	0.00	0.00	4.16
1511	1703	5.697633	GTGCATTTTCTGAATTTGACACCAT	59.302	36.000	0.00	0.00	0.00	3.55
1519	1711	5.412594	TCTGAATTTGACACCATTAGACTGC	59.587	40.000	0.00	0.00	0.00	4.40
1524	1716	2.749076	TGACACCATTAGACTGCAATGC	59.251	45.455	0.00	0.00	33.00	3.56
1528	1720	1.066605	CCATTAGACTGCAATGCTGGC	59.933	52.381	16.21	13.42	35.70	4.85
1541	1733	0.473755	TGCTGGCTGGAGAAGACAAA	59.526	50.000	0.00	0.00	45.94	2.83
1542	1734	1.133823	TGCTGGCTGGAGAAGACAAAA	60.134	47.619	0.00	0.00	45.94	2.44
1547	1739	3.244561	TGGCTGGAGAAGACAAAACTAGG	60.245	47.826	0.00	0.00	42.72	3.02
1549	1741	4.505039	GGCTGGAGAAGACAAAACTAGGAA	60.505	45.833	0.00	0.00	32.10	3.36
1578	1770	6.806668	TCCATGGTTCAGATACTTCATACA	57.193	37.500	12.58	0.00	0.00	2.29
1582	1774	7.040892	CCATGGTTCAGATACTTCATACATTGG	60.041	40.741	2.57	0.00	0.00	3.16
1583	1775	5.822519	TGGTTCAGATACTTCATACATTGGC	59.177	40.000	0.00	0.00	0.00	4.52
1584	1776	5.239525	GGTTCAGATACTTCATACATTGGCC	59.760	44.000	0.00	0.00	0.00	5.36
1585	1777	4.973168	TCAGATACTTCATACATTGGCCC	58.027	43.478	0.00	0.00	0.00	5.80
1586	1778	4.074970	CAGATACTTCATACATTGGCCCC	58.925	47.826	0.00	0.00	0.00	5.80
1587	1779	3.721575	AGATACTTCATACATTGGCCCCA	59.278	43.478	0.00	0.00	0.00	4.96
1588	1780	4.354987	AGATACTTCATACATTGGCCCCAT	59.645	41.667	0.00	0.00	0.00	4.00
1589	1781	3.403228	ACTTCATACATTGGCCCCATT	57.597	42.857	0.00	0.00	0.00	3.16
1590	1782	3.033184	ACTTCATACATTGGCCCCATTG	58.967	45.455	0.00	7.46	34.58	2.82
1591	1783	2.844654	TCATACATTGGCCCCATTGT	57.155	45.000	16.34	16.34	41.49	2.71
1592	1784	3.961484	TCATACATTGGCCCCATTGTA	57.039	42.857	18.83	18.83	42.80	2.41
1593	1785	3.561143	TCATACATTGGCCCCATTGTAC	58.439	45.455	18.88	0.00	42.03	2.90
1594	1786	3.053320	TCATACATTGGCCCCATTGTACA	60.053	43.478	18.88	9.88	42.03	2.90
1595	1787	1.851304	ACATTGGCCCCATTGTACAG	58.149	50.000	11.89	0.00	38.32	2.74
1596	1788	1.113788	CATTGGCCCCATTGTACAGG	58.886	55.000	0.00	0.00	0.00	4.00
1597	1789	1.006813	ATTGGCCCCATTGTACAGGA	58.993	50.000	0.00	0.00	0.00	3.86
1598	1790	0.780637	TTGGCCCCATTGTACAGGAA	59.219	50.000	0.00	0.00	0.00	3.36
1599	1791	0.039035	TGGCCCCATTGTACAGGAAC	59.961	55.000	0.00	0.00	0.00	3.62
1600	1792	0.683179	GGCCCCATTGTACAGGAACC	60.683	60.000	2.74	0.65	0.00	3.62
1601	1793	0.039035	GCCCCATTGTACAGGAACCA	59.961	55.000	2.74	0.00	0.00	3.67
1602	1794	1.834188	CCCCATTGTACAGGAACCAC	58.166	55.000	2.74	0.00	0.00	4.16
1603	1795	1.074727	CCCCATTGTACAGGAACCACA	59.925	52.381	2.74	0.00	0.00	4.17
1604	1796	2.291540	CCCCATTGTACAGGAACCACAT	60.292	50.000	2.74	0.00	0.00	3.21
1605	1797	3.430453	CCCATTGTACAGGAACCACATT	58.570	45.455	2.74	0.00	0.00	2.71
1606	1798	4.568804	CCCCATTGTACAGGAACCACATTA	60.569	45.833	2.74	0.00	0.00	1.90
1607	1799	5.200483	CCCATTGTACAGGAACCACATTAT	58.800	41.667	2.74	0.00	0.00	1.28
1608	1800	6.361433	CCCATTGTACAGGAACCACATTATA	58.639	40.000	2.74	0.00	0.00	0.98
1613	1805	5.962031	TGTACAGGAACCACATTATAGTCCT	59.038	40.000	0.00	0.00	0.00	3.85
1619	1811	9.712305	CAGGAACCACATTATAGTCCTAATTAG	57.288	37.037	5.43	5.43	0.00	1.73
1628	1820	9.167311	CATTATAGTCCTAATTAGGGTTCATGC	57.833	37.037	27.65	11.60	43.79	4.06
1629	1821	8.506196	TTATAGTCCTAATTAGGGTTCATGCT	57.494	34.615	27.65	16.62	43.79	3.79
1643	1867	3.632643	TCATGCTTCATGCTAACTCCA	57.367	42.857	2.12	0.00	41.18	3.86
1653	1877	1.202568	TGCTAACTCCATCCGAGCATG	60.203	52.381	0.00	0.00	43.01	4.06
1668	1892	0.176449	GCATGGGCTTTGTTGATCCC	59.824	55.000	0.00	0.00	39.22	3.85
1669	1893	0.457035	CATGGGCTTTGTTGATCCCG	59.543	55.000	0.00	0.00	41.65	5.14
1670	1894	1.322538	ATGGGCTTTGTTGATCCCGC	61.323	55.000	0.00	0.00	41.65	6.13
1671	1895	1.678970	GGGCTTTGTTGATCCCGCT	60.679	57.895	0.00	0.00	0.00	5.52
1672	1896	1.508088	GGCTTTGTTGATCCCGCTG	59.492	57.895	0.00	0.00	0.00	5.18
1677	1903	1.573829	TTGTTGATCCCGCTGTTCGC	61.574	55.000	0.00	0.00	36.73	4.70
1680	1906	4.467084	GATCCCGCTGTTCGCCCA	62.467	66.667	0.00	0.00	36.73	5.36
1707	1933	0.392998	GGACATGTGGGGCTGTACTG	60.393	60.000	1.15	0.00	0.00	2.74
1710	1936	1.982226	ACATGTGGGGCTGTACTGTAA	59.018	47.619	0.00	0.00	0.00	2.41
1712	1938	3.778075	ACATGTGGGGCTGTACTGTAATA	59.222	43.478	0.00	0.00	0.00	0.98
1724	1950	2.664015	ACTGTAATACTCCCTCCGTCC	58.336	52.381	0.00	0.00	0.00	4.79
1725	1951	2.024655	ACTGTAATACTCCCTCCGTCCA	60.025	50.000	0.00	0.00	0.00	4.02
1731	1957	2.200373	ACTCCCTCCGTCCAAAAATG	57.800	50.000	0.00	0.00	0.00	2.32
1733	1959	2.107552	ACTCCCTCCGTCCAAAAATGAA	59.892	45.455	0.00	0.00	0.00	2.57
1737	1963	3.258123	CCCTCCGTCCAAAAATGAATGTT	59.742	43.478	0.00	0.00	0.00	2.71
1754	1980	8.970691	ATGAATGTTGCTGATTTAGTACAAAC	57.029	30.769	0.00	0.00	30.60	2.93
1757	1983	9.463443	GAATGTTGCTGATTTAGTACAAACTTT	57.537	29.630	0.00	0.00	37.15	2.66
1772	1998	6.854496	ACAAACTTTGTACTAAATCAGCGA	57.146	33.333	5.30	0.00	43.27	4.93
1773	1999	6.656003	ACAAACTTTGTACTAAATCAGCGAC	58.344	36.000	5.30	0.00	43.27	5.19
1774	2000	6.259167	ACAAACTTTGTACTAAATCAGCGACA	59.741	34.615	5.30	0.00	43.27	4.35
1775	2001	5.840940	ACTTTGTACTAAATCAGCGACAC	57.159	39.130	0.00	0.00	0.00	3.67
1776	2002	5.539048	ACTTTGTACTAAATCAGCGACACT	58.461	37.500	0.00	0.00	0.00	3.55
1777	2003	5.989777	ACTTTGTACTAAATCAGCGACACTT	59.010	36.000	0.00	0.00	0.00	3.16
1778	2004	7.149973	ACTTTGTACTAAATCAGCGACACTTA	58.850	34.615	0.00	0.00	0.00	2.24
1779	2005	6.939551	TTGTACTAAATCAGCGACACTTAC	57.060	37.500	0.00	0.00	0.00	2.34
1780	2006	6.263516	TGTACTAAATCAGCGACACTTACT	57.736	37.500	0.00	0.00	0.00	2.24
1781	2007	6.684686	TGTACTAAATCAGCGACACTTACTT	58.315	36.000	0.00	0.00	0.00	2.24
1782	2008	7.149973	TGTACTAAATCAGCGACACTTACTTT	58.850	34.615	0.00	0.00	0.00	2.66
1783	2009	6.467723	ACTAAATCAGCGACACTTACTTTG	57.532	37.500	0.00	0.00	0.00	2.77
1784	2010	4.749245	AAATCAGCGACACTTACTTTGG	57.251	40.909	0.00	0.00	0.00	3.28
1785	2011	2.163818	TCAGCGACACTTACTTTGGG	57.836	50.000	0.00	0.00	0.00	4.12
1786	2012	1.689813	TCAGCGACACTTACTTTGGGA	59.310	47.619	0.00	0.00	0.00	4.37
1787	2013	1.798813	CAGCGACACTTACTTTGGGAC	59.201	52.381	0.00	0.00	0.00	4.46
1788	2014	0.788391	GCGACACTTACTTTGGGACG	59.212	55.000	0.00	0.00	0.00	4.79
1789	2015	1.425412	CGACACTTACTTTGGGACGG	58.575	55.000	0.00	0.00	0.00	4.79
1790	2016	1.000060	CGACACTTACTTTGGGACGGA	60.000	52.381	0.00	0.00	0.00	4.69
1791	2017	2.685100	GACACTTACTTTGGGACGGAG	58.315	52.381	0.00	0.00	0.00	4.63
1792	2018	1.346722	ACACTTACTTTGGGACGGAGG	59.653	52.381	0.00	0.00	0.00	4.30
1793	2019	0.981943	ACTTACTTTGGGACGGAGGG	59.018	55.000	0.00	0.00	0.00	4.30
1794	2020	1.272807	CTTACTTTGGGACGGAGGGA	58.727	55.000	0.00	0.00	0.00	4.20
1795	2021	1.207329	CTTACTTTGGGACGGAGGGAG	59.793	57.143	0.00	0.00	0.00	4.30
1796	2022	0.115745	TACTTTGGGACGGAGGGAGT	59.884	55.000	0.00	0.00	0.00	3.85
1797	2023	0.115745	ACTTTGGGACGGAGGGAGTA	59.884	55.000	0.00	0.00	0.00	2.59
1798	2024	0.824759	CTTTGGGACGGAGGGAGTAG	59.175	60.000	0.00	0.00	0.00	2.57
1799	2025	0.115745	TTTGGGACGGAGGGAGTAGT	59.884	55.000	0.00	0.00	0.00	2.73
1800	2026	1.002069	TTGGGACGGAGGGAGTAGTA	58.998	55.000	0.00	0.00	0.00	1.82
1801	2027	0.549950	TGGGACGGAGGGAGTAGTAG	59.450	60.000	0.00	0.00	0.00	2.57
1802	2028	0.550432	GGGACGGAGGGAGTAGTAGT	59.450	60.000	0.00	0.00	0.00	2.73
1803	2029	1.064091	GGGACGGAGGGAGTAGTAGTT	60.064	57.143	0.00	0.00	0.00	2.24
1804	2030	2.173569	GGGACGGAGGGAGTAGTAGTTA	59.826	54.545	0.00	0.00	0.00	2.24
1805	2031	3.475575	GGACGGAGGGAGTAGTAGTTAG	58.524	54.545	0.00	0.00	0.00	2.34
1806	2032	3.118075	GGACGGAGGGAGTAGTAGTTAGT	60.118	52.174	0.00	0.00	0.00	2.24
1807	2033	4.522114	GACGGAGGGAGTAGTAGTTAGTT	58.478	47.826	0.00	0.00	0.00	2.24
1808	2034	5.396884	GGACGGAGGGAGTAGTAGTTAGTTA	60.397	48.000	0.00	0.00	0.00	2.24
1809	2035	5.679601	ACGGAGGGAGTAGTAGTTAGTTAG	58.320	45.833	0.00	0.00	0.00	2.34
1810	2036	5.190726	ACGGAGGGAGTAGTAGTTAGTTAGT	59.809	44.000	0.00	0.00	0.00	2.24
1811	2037	6.118852	CGGAGGGAGTAGTAGTTAGTTAGTT	58.881	44.000	0.00	0.00	0.00	2.24
1812	2038	7.092846	ACGGAGGGAGTAGTAGTTAGTTAGTTA	60.093	40.741	0.00	0.00	0.00	2.24
1813	2039	7.440856	CGGAGGGAGTAGTAGTTAGTTAGTTAG	59.559	44.444	0.00	0.00	0.00	2.34
1849	2075	7.066284	ACTCTTATGTCTTATGTGTTCCATTGC	59.934	37.037	0.00	0.00	34.86	3.56
1882	2110	2.810439	TGCATAACCCAAGTTGTTGC	57.190	45.000	1.45	4.00	42.36	4.17
1955	2183	1.202758	TGCTTTCCACAGGTACCACAG	60.203	52.381	15.94	6.06	0.00	3.66
1956	2184	1.523758	CTTTCCACAGGTACCACAGC	58.476	55.000	15.94	0.00	0.00	4.40
1961	2189	0.681733	CACAGGTACCACAGCACTCT	59.318	55.000	15.94	0.00	0.00	3.24
1962	2190	1.070758	CACAGGTACCACAGCACTCTT	59.929	52.381	15.94	0.00	0.00	2.85
1963	2191	2.299013	CACAGGTACCACAGCACTCTTA	59.701	50.000	15.94	0.00	0.00	2.10
2002	2244	6.326323	TCTGCATATCAGAGGGTACAAATACA	59.674	38.462	0.00	0.00	46.34	2.29
2003	2245	6.894682	TGCATATCAGAGGGTACAAATACAA	58.105	36.000	0.00	0.00	32.40	2.41
2004	2246	7.517320	TGCATATCAGAGGGTACAAATACAAT	58.483	34.615	0.00	0.00	32.40	2.71
2007	2249	9.730705	CATATCAGAGGGTACAAATACAATCAT	57.269	33.333	0.00	0.00	32.40	2.45
2012	2378	7.554118	CAGAGGGTACAAATACAATCATGAAGT	59.446	37.037	0.00	4.33	32.40	3.01
2042	2408	5.418310	TTTTTCTTGGCGTTTACTCTGAG	57.582	39.130	2.45	2.45	0.00	3.35
2043	2409	4.330944	TTTCTTGGCGTTTACTCTGAGA	57.669	40.909	12.44	0.00	0.00	3.27
2151	2518	3.460857	GAGCATCCAGGATTAAGTCGT	57.539	47.619	0.00	0.00	0.00	4.34
2168	2535	1.284982	CGTAGTGACAGTGGCAGCAC	61.285	60.000	0.00	0.00	0.00	4.40
2209	2576	2.797177	AAAGCCATCTGAAGAGGACC	57.203	50.000	0.00	0.00	0.00	4.46
2210	2577	1.661463	AAGCCATCTGAAGAGGACCA	58.339	50.000	0.00	0.00	0.00	4.02
2240	2607	2.304180	GGCCACATAGGTATGCATCTCT	59.696	50.000	0.19	4.60	40.61	3.10
2241	2608	3.332919	GCCACATAGGTATGCATCTCTG	58.667	50.000	0.19	0.58	40.61	3.35
2242	2609	3.244353	GCCACATAGGTATGCATCTCTGT	60.244	47.826	0.19	1.28	40.61	3.41
2269	2641	0.324943	TCTGCACCTACTTTCTGGCC	59.675	55.000	0.00	0.00	0.00	5.36
2309	2683	3.933861	ACTAAATGAGGGTGGATGTCC	57.066	47.619	0.00	0.00	0.00	4.02
2328	2702	4.246458	GTCCAAGTTCTTCAAGCGAGTAT	58.754	43.478	0.00	0.00	0.00	2.12
2368	2742	0.173708	CCGAAGCCTGTACCTCTGAC	59.826	60.000	0.00	0.00	0.00	3.51
2387	2762	8.116753	CCTCTGACGATATTTTGTTCACAATAC	58.883	37.037	0.00	0.00	35.55	1.89
2516	2894	1.329599	GGTTAAGATTAAGCGGCACCG	59.670	52.381	4.30	4.30	43.09	4.94
2570	2948	9.887629	ATATAGATGCTGAAGACATAAGAATGG	57.112	33.333	0.00	0.00	37.43	3.16
2741	3120	1.072089	GTATCGCGCATCAGAAACGTC	60.072	52.381	8.75	0.00	0.00	4.34
2848	3227	4.056125	GCTTTCTTGCGCCCCACC	62.056	66.667	4.18	0.00	0.00	4.61
2883	3262	8.236586	GCTTTCTGTTGATGTCATACAATGTTA	58.763	33.333	0.00	0.00	0.00	2.41
2947	3326	3.034635	GAGGATAGAAGGCTTGGAGACA	58.965	50.000	3.46	0.00	39.83	3.41
3010	3389	2.695359	GAACAAGGAGACGCCATAACA	58.305	47.619	0.00	0.00	40.02	2.41
3030	3409	8.706936	CATAACATTCGAATCAGAGGTGAATAG	58.293	37.037	7.92	0.00	35.88	1.73
3031	3410	6.227298	ACATTCGAATCAGAGGTGAATAGT	57.773	37.500	7.92	0.00	35.88	2.12
3032	3411	6.276847	ACATTCGAATCAGAGGTGAATAGTC	58.723	40.000	7.92	0.00	35.88	2.59
3033	3412	6.097554	ACATTCGAATCAGAGGTGAATAGTCT	59.902	38.462	7.92	0.00	35.88	3.24
3035	3414	6.869315	TCGAATCAGAGGTGAATAGTCTAG	57.131	41.667	0.00	0.00	35.88	2.43
3036	3415	5.765677	TCGAATCAGAGGTGAATAGTCTAGG	59.234	44.000	0.00	0.00	35.88	3.02
3037	3416	5.563867	CGAATCAGAGGTGAATAGTCTAGGC	60.564	48.000	0.00	0.00	35.88	3.93
3040	3419	4.890581	TCAGAGGTGAATAGTCTAGGCTTC	59.109	45.833	0.11	0.00	0.00	3.86
3043	3422	3.386402	AGGTGAATAGTCTAGGCTTCAGC	59.614	47.826	16.82	16.82	43.12	4.26
3044	3423	3.133003	GGTGAATAGTCTAGGCTTCAGCA	59.867	47.826	18.76	4.57	42.62	4.41
3045	3424	4.116238	GTGAATAGTCTAGGCTTCAGCAC	58.884	47.826	0.11	2.95	44.36	4.40
3047	3426	3.810310	ATAGTCTAGGCTTCAGCACAC	57.190	47.619	0.11	0.00	44.36	3.82
3048	3427	1.638529	AGTCTAGGCTTCAGCACACT	58.361	50.000	0.30	0.00	44.36	3.55
3050	3429	2.028567	AGTCTAGGCTTCAGCACACTTC	60.029	50.000	0.30	0.00	44.36	3.01
3051	3430	2.028567	GTCTAGGCTTCAGCACACTTCT	60.029	50.000	0.30	0.00	44.36	2.85
3052	3431	2.634940	TCTAGGCTTCAGCACACTTCTT	59.365	45.455	0.30	0.00	44.36	2.52
3053	3432	2.355010	AGGCTTCAGCACACTTCTTT	57.645	45.000	0.30	0.00	44.36	2.52
3054	3433	2.659428	AGGCTTCAGCACACTTCTTTT	58.341	42.857	0.30	0.00	44.36	2.27
3055	3434	2.360165	AGGCTTCAGCACACTTCTTTTG	59.640	45.455	0.30	0.00	44.36	2.44
3057	3436	3.549625	GGCTTCAGCACACTTCTTTTGAG	60.550	47.826	0.30	0.00	44.36	3.02
3058	3437	3.549625	GCTTCAGCACACTTCTTTTGAGG	60.550	47.826	0.00	0.00	41.59	3.86
3060	3439	3.884895	TCAGCACACTTCTTTTGAGGAA	58.115	40.909	0.00	0.00	0.00	3.36
3061	3440	4.464008	TCAGCACACTTCTTTTGAGGAAT	58.536	39.130	0.00	0.00	0.00	3.01
3062	3441	5.620206	TCAGCACACTTCTTTTGAGGAATA	58.380	37.500	0.00	0.00	0.00	1.75
3063	3442	5.702670	TCAGCACACTTCTTTTGAGGAATAG	59.297	40.000	0.00	0.00	0.00	1.73
3064	3443	5.471456	CAGCACACTTCTTTTGAGGAATAGT	59.529	40.000	0.00	0.00	0.00	2.12
3067	3446	7.885399	AGCACACTTCTTTTGAGGAATAGTTAT	59.115	33.333	0.00	0.00	0.00	1.89
3068	3447	9.162764	GCACACTTCTTTTGAGGAATAGTTATA	57.837	33.333	0.00	0.00	0.00	0.98
3075	3454	9.547753	TCTTTTGAGGAATAGTTATATCAGCAC	57.452	33.333	0.00	0.00	0.00	4.40
3076	3455	9.330063	CTTTTGAGGAATAGTTATATCAGCACA	57.670	33.333	0.00	0.00	0.00	4.57
3077	3456	8.662781	TTTGAGGAATAGTTATATCAGCACAC	57.337	34.615	0.00	0.00	0.00	3.82
3082	3544	8.486210	AGGAATAGTTATATCAGCACACTTGAA	58.514	33.333	0.00	0.00	0.00	2.69
3083	3545	9.277783	GGAATAGTTATATCAGCACACTTGAAT	57.722	33.333	0.00	0.00	0.00	2.57
3105	3573	4.985538	TGTAGCTGAAACCCATCTTTTCT	58.014	39.130	0.00	0.00	34.58	2.52
3106	3574	5.003804	TGTAGCTGAAACCCATCTTTTCTC	58.996	41.667	0.00	0.00	34.58	2.87
3110	3578	4.741342	CTGAAACCCATCTTTTCTCATGC	58.259	43.478	0.00	0.00	34.58	4.06
3116	3584	3.629398	CCCATCTTTTCTCATGCCAGTAC	59.371	47.826	0.00	0.00	0.00	2.73
3117	3585	4.264253	CCATCTTTTCTCATGCCAGTACA	58.736	43.478	0.00	0.00	0.00	2.90
3119	3587	5.359009	CCATCTTTTCTCATGCCAGTACAAT	59.641	40.000	0.00	0.00	0.00	2.71
3120	3588	6.543465	CCATCTTTTCTCATGCCAGTACAATA	59.457	38.462	0.00	0.00	0.00	1.90
3121	3589	7.255035	CCATCTTTTCTCATGCCAGTACAATAG	60.255	40.741	0.00	0.00	0.00	1.73
3123	3591	7.847096	TCTTTTCTCATGCCAGTACAATAGTA	58.153	34.615	0.00	0.00	0.00	1.82
3124	3592	8.486210	TCTTTTCTCATGCCAGTACAATAGTAT	58.514	33.333	0.00	0.00	31.84	2.12
3125	3593	9.113838	CTTTTCTCATGCCAGTACAATAGTATT	57.886	33.333	0.00	0.00	31.84	1.89
3127	3595	8.437360	TTCTCATGCCAGTACAATAGTATTTG	57.563	34.615	0.00	0.00	31.84	2.32
3128	3596	6.992123	TCTCATGCCAGTACAATAGTATTTGG	59.008	38.462	6.88	6.88	39.19	3.28
3134	3602	7.492352	CCAGTACAATAGTATTTGGCTAACC	57.508	40.000	0.00	0.00	33.76	2.85
3137	3605	4.777463	ACAATAGTATTTGGCTAACCGCT	58.223	39.130	0.00	0.00	39.70	5.52
3138	3606	4.574828	ACAATAGTATTTGGCTAACCGCTG	59.425	41.667	0.00	0.00	39.70	5.18
3139	3607	2.038387	AGTATTTGGCTAACCGCTGG	57.962	50.000	0.00	0.00	39.70	4.85
3140	3608	0.380733	GTATTTGGCTAACCGCTGGC	59.619	55.000	0.00	0.00	39.70	4.85
3141	3609	0.034960	TATTTGGCTAACCGCTGGCA	60.035	50.000	0.00	0.00	39.70	4.92
3142	3610	0.684153	ATTTGGCTAACCGCTGGCAT	60.684	50.000	0.00	0.00	39.70	4.40
3177	3707	0.902984	TGCAGGTGGACCGAGTGTAT	60.903	55.000	0.00	0.00	42.08	2.29
3213	3743	1.364171	GATAGCGGTGCTCGACCAT	59.636	57.895	0.00	0.00	46.55	3.55
3228	3758	0.035317	ACCATGAGAAGAAGCGCACA	59.965	50.000	11.47	0.00	0.00	4.57
3237	3767	2.293677	AGAAGCGCACATTCGTCATA	57.706	45.000	11.47	0.00	0.00	2.15
3240	3770	2.293677	AGCGCACATTCGTCATAAGA	57.706	45.000	11.47	0.00	0.00	2.10
3273	3803	3.806591	CGACACCGGTAAGACACAT	57.193	52.632	6.87	0.00	0.00	3.21
3274	3804	1.625616	CGACACCGGTAAGACACATC	58.374	55.000	6.87	0.00	0.00	3.06
3275	3805	1.201647	CGACACCGGTAAGACACATCT	59.798	52.381	6.87	0.00	36.42	2.90
3296	3834	2.017049	GTTCATCCATTTCCCTCCGTG	58.983	52.381	0.00	0.00	0.00	4.94
3298	3836	1.103398	CATCCATTTCCCTCCGTGCC	61.103	60.000	0.00	0.00	0.00	5.01
3299	3837	1.281925	ATCCATTTCCCTCCGTGCCT	61.282	55.000	0.00	0.00	0.00	4.75
3304	3842	3.846405	TTCCCTCCGTGCCTCCAGT	62.846	63.158	0.00	0.00	0.00	4.00
3305	3843	2.363795	CCCTCCGTGCCTCCAGTA	60.364	66.667	0.00	0.00	0.00	2.74
3306	3844	1.987855	CCCTCCGTGCCTCCAGTAA	60.988	63.158	0.00	0.00	0.00	2.24
3307	3845	1.550130	CCCTCCGTGCCTCCAGTAAA	61.550	60.000	0.00	0.00	0.00	2.01
3312	3850	1.504359	CGTGCCTCCAGTAAACGAAA	58.496	50.000	0.00	0.00	36.38	3.46
3317	3855	1.804748	CCTCCAGTAAACGAAACCAGC	59.195	52.381	0.00	0.00	0.00	4.85
3320	3858	1.265905	CCAGTAAACGAAACCAGCCAC	59.734	52.381	0.00	0.00	0.00	5.01
3325	3863	2.590575	CGAAACCAGCCACGGTGT	60.591	61.111	7.45	0.00	39.95	4.16
3326	3864	1.301087	CGAAACCAGCCACGGTGTA	60.301	57.895	7.45	0.00	39.95	2.90
3327	3865	0.672401	CGAAACCAGCCACGGTGTAT	60.672	55.000	7.45	0.00	39.95	2.29
3328	3866	1.404449	CGAAACCAGCCACGGTGTATA	60.404	52.381	7.45	0.00	39.95	1.47
3329	3867	2.277084	GAAACCAGCCACGGTGTATAG	58.723	52.381	7.45	0.00	39.95	1.31
3330	3868	0.107848	AACCAGCCACGGTGTATAGC	60.108	55.000	7.45	3.21	39.95	2.97
3332	3870	0.107897	CCAGCCACGGTGTATAGCAA	60.108	55.000	7.45	0.00	0.00	3.91
3333	3871	1.006832	CAGCCACGGTGTATAGCAAC	58.993	55.000	7.45	0.00	0.00	4.17
3348	3886	6.488344	TGTATAGCAACACACTGAAATTTCCA	59.512	34.615	15.48	3.32	0.00	3.53
3351	3889	3.383761	CAACACACTGAAATTTCCAGCC	58.616	45.455	15.48	0.00	35.14	4.85
3355	3893	5.815581	ACACACTGAAATTTCCAGCCTATA	58.184	37.500	15.48	0.00	35.14	1.31
3391	3952	2.269241	CCGTGGGAGAAGAAGGCC	59.731	66.667	0.00	0.00	0.00	5.19
3605	4170	1.903860	AGCGTGGTTGGTGATAGGTTA	59.096	47.619	0.00	0.00	0.00	2.85
3632	4201	1.553248	TGTCTGTATGTGTAGCCACCC	59.447	52.381	0.00	0.00	41.09	4.61
3636	4205	0.822164	GTATGTGTAGCCACCCGTCT	59.178	55.000	0.00	0.00	41.09	4.18
3683	4261	6.294361	TGTACTAGCATCTTTGTACATGGT	57.706	37.500	0.00	0.00	39.85	3.55
3762	4340	1.827399	GCCGAGACCTGGTTTCTGGA	61.827	60.000	22.83	0.00	36.08	3.86
3763	4341	0.685097	CCGAGACCTGGTTTCTGGAA	59.315	55.000	17.33	0.00	36.08	3.53
3764	4342	1.279271	CCGAGACCTGGTTTCTGGAAT	59.721	52.381	17.33	0.00	36.08	3.01
3765	4343	2.350522	CGAGACCTGGTTTCTGGAATG	58.649	52.381	14.62	0.00	36.08	2.67
3766	4344	2.289694	CGAGACCTGGTTTCTGGAATGT	60.290	50.000	14.62	0.00	36.08	2.71
3767	4345	3.339141	GAGACCTGGTTTCTGGAATGTC	58.661	50.000	9.96	0.00	36.08	3.06
3768	4346	2.076863	GACCTGGTTTCTGGAATGTCG	58.923	52.381	0.00	0.00	36.08	4.35
3769	4347	0.804989	CCTGGTTTCTGGAATGTCGC	59.195	55.000	0.00	0.00	34.32	5.19
3770	4348	0.804989	CTGGTTTCTGGAATGTCGCC	59.195	55.000	0.00	0.00	0.00	5.54
3771	4349	0.953471	TGGTTTCTGGAATGTCGCCG	60.953	55.000	0.00	0.00	0.00	6.46
3772	4350	1.644786	GGTTTCTGGAATGTCGCCGG	61.645	60.000	0.00	0.00	0.00	6.13
3773	4351	0.953960	GTTTCTGGAATGTCGCCGGT	60.954	55.000	1.90	0.00	33.40	5.28
3774	4352	0.953471	TTTCTGGAATGTCGCCGGTG	60.953	55.000	9.28	9.28	33.40	4.94
3775	4353	3.499737	CTGGAATGTCGCCGGTGC	61.500	66.667	11.05	6.30	0.00	5.01
3787	4365	4.003788	CGGTGCCGAGACCTGGTT	62.004	66.667	4.35	0.00	42.83	3.67
3788	4366	2.430367	GGTGCCGAGACCTGGTTT	59.570	61.111	0.00	0.00	32.69	3.27
3789	4367	1.671379	GGTGCCGAGACCTGGTTTC	60.671	63.158	7.29	7.29	32.69	2.78
3790	4368	1.371558	GTGCCGAGACCTGGTTTCT	59.628	57.895	14.62	1.77	0.00	2.52
3791	4369	0.951040	GTGCCGAGACCTGGTTTCTG	60.951	60.000	14.62	9.68	0.00	3.02
3792	4370	1.376037	GCCGAGACCTGGTTTCTGG	60.376	63.158	14.62	16.39	37.91	3.86
3842	4420	0.179163	CTTTTTCGATGAAGGGCGCC	60.179	55.000	21.18	21.18	0.00	6.53
3849	4427	1.197721	CGATGAAGGGCGCCATTTATC	59.802	52.381	35.35	35.35	0.00	1.75
3852	4430	1.202758	TGAAGGGCGCCATTTATCGAT	60.203	47.619	29.02	2.57	0.00	3.59
3859	4437	4.096382	GGGCGCCATTTATCGATTCATAAT	59.904	41.667	30.85	0.00	0.00	1.28
3860	4438	5.030295	GGCGCCATTTATCGATTCATAATG	58.970	41.667	24.80	8.87	0.00	1.90
3863	4441	6.901887	GCGCCATTTATCGATTCATAATGTAG	59.098	38.462	1.71	6.55	0.00	2.74
3864	4442	6.901887	CGCCATTTATCGATTCATAATGTAGC	59.098	38.462	1.71	7.91	0.00	3.58
3872	4450	7.391288	ATCGATTCATAATGTAGCATCGAGCC	61.391	42.308	7.95	0.00	44.02	4.70
3892	4470	6.868339	CGAGCCATACAATCACAATGAGTATA	59.132	38.462	0.00	0.00	0.00	1.47
3911	4489	1.524621	CACCCGGCCTCTGCATAAG	60.525	63.158	0.00	0.00	40.13	1.73
3914	4492	0.249911	CCCGGCCTCTGCATAAGTAC	60.250	60.000	0.00	0.00	40.13	2.73
3930	4508	6.993878	CATAAGTACGATGCATATAGCCAAC	58.006	40.000	0.00	0.00	44.83	3.77
3967	4545	3.624326	GCACACAGCAAAGTCATACAA	57.376	42.857	0.00	0.00	44.79	2.41
3968	4546	3.558505	GCACACAGCAAAGTCATACAAG	58.441	45.455	0.00	0.00	44.79	3.16
3969	4547	3.250762	GCACACAGCAAAGTCATACAAGA	59.749	43.478	0.00	0.00	44.79	3.02
3970	4548	4.776743	CACACAGCAAAGTCATACAAGAC	58.223	43.478	0.00	0.00	38.81	3.01
3971	4549	3.815401	ACACAGCAAAGTCATACAAGACC	59.185	43.478	0.00	0.00	39.34	3.85
3972	4550	3.067106	ACAGCAAAGTCATACAAGACCG	58.933	45.455	0.00	0.00	39.34	4.79
3973	4551	3.244078	ACAGCAAAGTCATACAAGACCGA	60.244	43.478	0.00	0.00	39.34	4.69
3974	4552	3.745975	CAGCAAAGTCATACAAGACCGAA	59.254	43.478	0.00	0.00	39.34	4.30
3975	4553	3.997021	AGCAAAGTCATACAAGACCGAAG	59.003	43.478	0.00	0.00	39.34	3.79
3976	4554	3.424962	GCAAAGTCATACAAGACCGAAGC	60.425	47.826	0.00	0.00	39.34	3.86
3977	4555	3.963428	AAGTCATACAAGACCGAAGCT	57.037	42.857	0.00	0.00	39.34	3.74
3978	4556	5.168569	CAAAGTCATACAAGACCGAAGCTA	58.831	41.667	0.00	0.00	39.34	3.32
3979	4557	5.599999	AAGTCATACAAGACCGAAGCTAT	57.400	39.130	0.00	0.00	39.34	2.97
3980	4558	4.938080	AGTCATACAAGACCGAAGCTATG	58.062	43.478	0.00	0.00	39.34	2.23
3981	4559	3.491267	GTCATACAAGACCGAAGCTATGC	59.509	47.826	0.00	0.00	32.36	3.14
3982	4560	3.384789	TCATACAAGACCGAAGCTATGCT	59.615	43.478	0.00	0.00	42.56	3.79
3983	4561	4.583073	TCATACAAGACCGAAGCTATGCTA	59.417	41.667	0.00	0.00	38.25	3.49
3984	4562	3.444703	ACAAGACCGAAGCTATGCTAG	57.555	47.619	0.00	0.00	38.25	3.42
3985	4563	2.101582	ACAAGACCGAAGCTATGCTAGG	59.898	50.000	10.83	10.83	38.25	3.02
3986	4564	2.074729	AGACCGAAGCTATGCTAGGT	57.925	50.000	15.77	15.77	46.74	3.08
3987	4565	1.683917	AGACCGAAGCTATGCTAGGTG	59.316	52.381	19.11	1.97	45.10	4.00
3988	4566	1.681793	GACCGAAGCTATGCTAGGTGA	59.318	52.381	19.11	0.00	45.10	4.02
3989	4567	2.100916	GACCGAAGCTATGCTAGGTGAA	59.899	50.000	19.11	0.00	45.10	3.18
3990	4568	2.101582	ACCGAAGCTATGCTAGGTGAAG	59.898	50.000	15.30	0.00	44.07	3.02
3991	4569	2.546795	CCGAAGCTATGCTAGGTGAAGG	60.547	54.545	0.00	0.00	38.25	3.46
3992	4570	2.546795	CGAAGCTATGCTAGGTGAAGGG	60.547	54.545	0.00	0.00	38.25	3.95
3993	4571	1.428869	AGCTATGCTAGGTGAAGGGG	58.571	55.000	0.00	0.00	36.99	4.79
3994	4572	1.062121	AGCTATGCTAGGTGAAGGGGA	60.062	52.381	0.00	0.00	36.99	4.81
3995	4573	1.768870	GCTATGCTAGGTGAAGGGGAA	59.231	52.381	0.00	0.00	0.00	3.97
3996	4574	2.172717	GCTATGCTAGGTGAAGGGGAAA	59.827	50.000	0.00	0.00	0.00	3.13
3997	4575	3.371595	GCTATGCTAGGTGAAGGGGAAAA	60.372	47.826	0.00	0.00	0.00	2.29
3998	4576	3.825908	ATGCTAGGTGAAGGGGAAAAA	57.174	42.857	0.00	0.00	0.00	1.94
4020	4598	6.799926	AAAGAAAGCAAAGCAAAGAAAACA	57.200	29.167	0.00	0.00	0.00	2.83
4021	4599	6.799926	AAGAAAGCAAAGCAAAGAAAACAA	57.200	29.167	0.00	0.00	0.00	2.83
4022	4600	6.413018	AGAAAGCAAAGCAAAGAAAACAAG	57.587	33.333	0.00	0.00	0.00	3.16
4023	4601	6.165577	AGAAAGCAAAGCAAAGAAAACAAGA	58.834	32.000	0.00	0.00	0.00	3.02
4024	4602	6.650390	AGAAAGCAAAGCAAAGAAAACAAGAA	59.350	30.769	0.00	0.00	0.00	2.52
4025	4603	6.799926	AAGCAAAGCAAAGAAAACAAGAAA	57.200	29.167	0.00	0.00	0.00	2.52
4026	4604	6.799926	AGCAAAGCAAAGAAAACAAGAAAA	57.200	29.167	0.00	0.00	0.00	2.29
4027	4605	7.200778	AGCAAAGCAAAGAAAACAAGAAAAA	57.799	28.000	0.00	0.00	0.00	1.94
4049	4627	6.799926	AAAGAAAGCAAAGCAAAGAAAACA	57.200	29.167	0.00	0.00	0.00	2.83
4050	4628	6.799926	AAGAAAGCAAAGCAAAGAAAACAA	57.200	29.167	0.00	0.00	0.00	2.83
4051	4629	6.169419	AGAAAGCAAAGCAAAGAAAACAAC	57.831	33.333	0.00	0.00	0.00	3.32
4052	4630	5.700373	AGAAAGCAAAGCAAAGAAAACAACA	59.300	32.000	0.00	0.00	0.00	3.33
4053	4631	5.938438	AAGCAAAGCAAAGAAAACAACAA	57.062	30.435	0.00	0.00	0.00	2.83
4054	4632	6.499234	AAGCAAAGCAAAGAAAACAACAAT	57.501	29.167	0.00	0.00	0.00	2.71
4055	4633	6.499234	AGCAAAGCAAAGAAAACAACAATT	57.501	29.167	0.00	0.00	0.00	2.32
4056	4634	6.316319	AGCAAAGCAAAGAAAACAACAATTG	58.684	32.000	3.24	3.24	0.00	2.32
4057	4635	6.149142	AGCAAAGCAAAGAAAACAACAATTGA	59.851	30.769	13.59	0.00	0.00	2.57
4058	4636	6.968335	GCAAAGCAAAGAAAACAACAATTGAT	59.032	30.769	13.59	0.00	0.00	2.57
4059	4637	7.044576	GCAAAGCAAAGAAAACAACAATTGATG	60.045	33.333	13.59	13.61	0.00	3.07
4060	4638	7.846644	AAGCAAAGAAAACAACAATTGATGA	57.153	28.000	21.13	0.00	0.00	2.92
4061	4639	8.441312	AAGCAAAGAAAACAACAATTGATGAT	57.559	26.923	21.13	7.65	0.00	2.45
4062	4640	9.545105	AAGCAAAGAAAACAACAATTGATGATA	57.455	25.926	21.13	0.00	0.00	2.15
4073	4651	8.461222	ACAACAATTGATGATATACAACAGTGG	58.539	33.333	21.13	0.00	33.14	4.00
4103	4717	4.802039	GCATCAACCATTTATTGACAGCAG	59.198	41.667	8.34	0.00	38.84	4.24
4117	4731	4.049186	TGACAGCAGAAAGACTACGAAAC	58.951	43.478	0.00	0.00	0.00	2.78
4126	4740	3.555917	AGACTACGAAACAGGTTCTCG	57.444	47.619	0.00	12.05	38.53	4.04
4142	4756	4.446051	GGTTCTCGAAAAGTCTCTTGACAG	59.554	45.833	0.00	0.00	45.20	3.51
4153	4767	6.842437	AGTCTCTTGACAGCATAAAGACTA	57.158	37.500	0.00	0.00	45.20	2.59
4155	4769	6.209589	AGTCTCTTGACAGCATAAAGACTACA	59.790	38.462	0.00	0.00	45.20	2.74
4191	4805	1.988107	AGGCAATGTCTTCAGGAAGGA	59.012	47.619	9.03	0.00	38.88	3.36
4200	4814	2.432874	TCTTCAGGAAGGAAACGACACA	59.567	45.455	9.03	0.00	38.88	3.72
4207	4821	1.083847	GGAAACGACACACGAACGC	60.084	57.895	0.00	0.00	45.77	4.84
4208	4822	1.083847	GAAACGACACACGAACGCC	60.084	57.895	0.00	0.00	45.77	5.68
4209	4823	2.722281	GAAACGACACACGAACGCCG	62.722	60.000	0.00	0.00	45.77	6.46
4281	4966	1.407258	GAGCAAGTCCGAGCATACTCT	59.593	52.381	0.00	0.00	41.09	3.24
4318	5003	2.101249	AGGGTAACGACACAAAGAACGA	59.899	45.455	0.00	0.00	37.60	3.85
4320	5005	2.859538	GGTAACGACACAAAGAACGACA	59.140	45.455	0.00	0.00	0.00	4.35
4347	5032	3.014623	GTCAGGTATAACCAACAAGGGC	58.985	50.000	0.00	0.00	41.95	5.19
4349	5034	1.997040	AGGTATAACCAACAAGGGCCA	59.003	47.619	6.18	0.00	41.95	5.36
4375	5060	2.434774	GTTTTCACCCCGGAGCCT	59.565	61.111	0.73	0.00	0.00	4.58
4396	5081	2.040012	TGAGACCAGGTACTCGAGAAGT	59.960	50.000	21.68	6.46	42.33	3.01
4416	5101	0.541863	ACCACCCAATCGAGTCATCC	59.458	55.000	0.00	0.00	0.00	3.51
4448	5133	1.303236	CCACTTGCCACGATCCCAA	60.303	57.895	0.00	0.00	0.00	4.12
4449	5134	0.680921	CCACTTGCCACGATCCCAAT	60.681	55.000	0.00	0.00	0.00	3.16
4451	5136	1.942657	CACTTGCCACGATCCCAATAG	59.057	52.381	0.00	0.00	0.00	1.73
4459	5144	2.998670	CACGATCCCAATAGCTGCATAG	59.001	50.000	1.02	0.00	0.00	2.23
4460	5145	2.027745	ACGATCCCAATAGCTGCATAGG	60.028	50.000	1.02	0.00	0.00	2.57
4462	5147	0.035317	TCCCAATAGCTGCATAGGCG	59.965	55.000	1.02	0.00	45.35	5.52
4499	5186	0.391661	AAAGGTCATGCTCGCACGAT	60.392	50.000	0.00	0.00	0.00	3.73
4540	5227	0.740868	GAGCTGCTCGCCACAACATA	60.741	55.000	14.68	0.00	40.39	2.29
4552	5239	4.092237	CGCCACAACATAACGAAGTCATTA	59.908	41.667	0.00	0.00	45.00	1.90
4555	5242	6.013085	CCACAACATAACGAAGTCATTAACG	58.987	40.000	0.00	0.00	45.00	3.18
4558	5245	5.675778	ACATAACGAAGTCATTAACGACG	57.324	39.130	0.00	0.00	45.00	5.12

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
7	8	4.798387	GCTCCAACTTTTTAATGTATGCGG	59.202	41.667	0.00	0.00	0.00	5.69
13	14	4.911514	ACACGCTCCAACTTTTTAATGT	57.088	36.364	0.00	0.00	0.00	2.71
48	49	0.108585	ACTTTTTGAGCTGCCTCCGA	59.891	50.000	0.00	0.00	37.29	4.55
56	57	9.964303	AAAAACAATTTTTGAACTTTTTGAGCT	57.036	22.222	0.00	0.00	41.04	4.09
66	67	4.267733	CGCCGGAAAAACAATTTTTGAAC	58.732	39.130	5.05	0.00	42.51	3.18
68	69	2.866762	CCGCCGGAAAAACAATTTTTGA	59.133	40.909	5.05	0.00	42.51	2.69
69	70	2.601029	GCCGCCGGAAAAACAATTTTTG	60.601	45.455	7.68	0.00	42.51	2.44
101	112	1.605058	CGCCTAGCTGGTGTACTGGT	61.605	60.000	0.00	0.00	41.27	4.00
133	144	3.283684	TTTCCCGTTGCCACAGCG	61.284	61.111	0.00	0.00	44.31	5.18
136	147	3.587933	GCGTTTCCCGTTGCCACA	61.588	61.111	0.00	0.00	39.32	4.17
178	212	2.486918	GTCGAGTCTCCTAGTAGCTCC	58.513	57.143	0.00	0.00	0.00	4.70
420	470	1.390565	CGGGTAGCAGCAGTAGTAGT	58.609	55.000	0.00	0.00	0.00	2.73
438	488	1.153628	GGTGGTACTACTGGCAGCG	60.154	63.158	15.89	8.70	0.00	5.18
475	541	1.630333	ATGGAGGGAGGGAGGGAGA	60.630	63.158	0.00	0.00	0.00	3.71
479	545	3.174265	GCCATGGAGGGAGGGAGG	61.174	72.222	18.40	0.00	38.09	4.30
480	546	1.358830	AATGCCATGGAGGGAGGGAG	61.359	60.000	18.40	0.00	43.00	4.30
481	547	1.309013	AATGCCATGGAGGGAGGGA	60.309	57.895	18.40	0.00	43.00	4.20
482	548	1.152610	CAATGCCATGGAGGGAGGG	60.153	63.158	18.40	0.00	43.00	4.30
483	549	1.831286	GCAATGCCATGGAGGGAGG	60.831	63.158	18.40	0.00	43.00	4.30
484	550	2.191513	CGCAATGCCATGGAGGGAG	61.192	63.158	18.40	1.28	43.00	4.30
485	551	2.124193	CGCAATGCCATGGAGGGA	60.124	61.111	18.40	0.00	44.34	4.20
486	552	2.440796	ACGCAATGCCATGGAGGG	60.441	61.111	18.40	12.21	38.09	4.30
487	553	2.048023	ACACGCAATGCCATGGAGG	61.048	57.895	18.40	1.64	41.84	4.30
488	554	1.138036	CACACGCAATGCCATGGAG	59.862	57.895	18.40	2.48	0.00	3.86
489	555	0.680601	ATCACACGCAATGCCATGGA	60.681	50.000	18.40	0.31	0.00	3.41
522	588	2.496341	CTAGCAGTAGCAGGCGCA	59.504	61.111	10.83	0.00	45.49	6.09
533	599	0.807496	GGAGCAAAGCAACCTAGCAG	59.193	55.000	0.00	0.00	36.85	4.24
534	600	0.401738	AGGAGCAAAGCAACCTAGCA	59.598	50.000	6.09	0.00	36.32	3.49
535	601	1.090728	GAGGAGCAAAGCAACCTAGC	58.909	55.000	7.50	0.00	37.61	3.42
536	602	1.003580	TGGAGGAGCAAAGCAACCTAG	59.996	52.381	7.50	0.00	37.61	3.02
537	603	1.064003	TGGAGGAGCAAAGCAACCTA	58.936	50.000	7.50	0.00	37.61	3.08
538	604	0.538287	GTGGAGGAGCAAAGCAACCT	60.538	55.000	7.30	7.30	39.37	3.50
539	605	1.856265	CGTGGAGGAGCAAAGCAACC	61.856	60.000	0.00	0.00	0.00	3.77
540	606	1.166531	ACGTGGAGGAGCAAAGCAAC	61.167	55.000	0.00	0.00	0.00	4.17
542	608	1.597854	CACGTGGAGGAGCAAAGCA	60.598	57.895	7.95	0.00	0.00	3.91
543	609	2.970974	GCACGTGGAGGAGCAAAGC	61.971	63.158	18.88	0.00	0.00	3.51
545	611	2.664851	CGCACGTGGAGGAGCAAA	60.665	61.111	18.88	0.00	0.00	3.68
727	826	2.650116	CCCACCTCACCTCACCTCG	61.650	68.421	0.00	0.00	0.00	4.63
728	827	1.536662	ACCCACCTCACCTCACCTC	60.537	63.158	0.00	0.00	0.00	3.85
729	828	1.843376	CACCCACCTCACCTCACCT	60.843	63.158	0.00	0.00	0.00	4.00
730	829	2.750350	CACCCACCTCACCTCACC	59.250	66.667	0.00	0.00	0.00	4.02
731	830	2.147387	ACCACCCACCTCACCTCAC	61.147	63.158	0.00	0.00	0.00	3.51
732	831	2.146724	CACCACCCACCTCACCTCA	61.147	63.158	0.00	0.00	0.00	3.86
733	832	2.750350	CACCACCCACCTCACCTC	59.250	66.667	0.00	0.00	0.00	3.85
734	833	2.854032	CCACCACCCACCTCACCT	60.854	66.667	0.00	0.00	0.00	4.00
735	834	4.660938	GCCACCACCCACCTCACC	62.661	72.222	0.00	0.00	0.00	4.02
736	835	3.553095	GAGCCACCACCCACCTCAC	62.553	68.421	0.00	0.00	0.00	3.51
951	1095	1.213537	GTCGGTCGGAACCAATCGA	59.786	57.895	0.00	0.00	46.86	3.59
1174	1329	2.023223	CCTGCAATGCAACCAACGC	61.023	57.895	9.92	0.00	38.41	4.84
1175	1330	0.940519	CACCTGCAATGCAACCAACG	60.941	55.000	9.92	0.00	38.41	4.10
1176	1331	0.388659	TCACCTGCAATGCAACCAAC	59.611	50.000	9.92	0.00	38.41	3.77
1178	1333	1.808531	GCTCACCTGCAATGCAACCA	61.809	55.000	9.92	0.00	38.41	3.67
1180	1335	1.080298	GGCTCACCTGCAATGCAAC	60.080	57.895	9.92	0.00	38.41	4.17
1181	1336	3.368822	GGCTCACCTGCAATGCAA	58.631	55.556	9.92	0.00	38.41	4.08
1330	1495	2.263741	CCAGCACAGCACAGAACCC	61.264	63.158	0.00	0.00	0.00	4.11
1331	1496	1.103398	AACCAGCACAGCACAGAACC	61.103	55.000	0.00	0.00	0.00	3.62
1348	1513	5.063438	TCTCGCACTGCATCAAACTTATAAC	59.937	40.000	1.11	0.00	0.00	1.89
1349	1514	5.175127	TCTCGCACTGCATCAAACTTATAA	58.825	37.500	1.11	0.00	0.00	0.98
1350	1515	4.754322	TCTCGCACTGCATCAAACTTATA	58.246	39.130	1.11	0.00	0.00	0.98
1351	1516	3.599343	TCTCGCACTGCATCAAACTTAT	58.401	40.909	1.11	0.00	0.00	1.73
1352	1517	2.995939	CTCTCGCACTGCATCAAACTTA	59.004	45.455	1.11	0.00	0.00	2.24
1353	1518	1.802960	CTCTCGCACTGCATCAAACTT	59.197	47.619	1.11	0.00	0.00	2.66
1354	1519	1.001293	TCTCTCGCACTGCATCAAACT	59.999	47.619	1.11	0.00	0.00	2.66
1355	1520	1.432514	TCTCTCGCACTGCATCAAAC	58.567	50.000	1.11	0.00	0.00	2.93
1356	1521	2.391616	ATCTCTCGCACTGCATCAAA	57.608	45.000	1.11	0.00	0.00	2.69
1357	1522	2.274437	GAATCTCTCGCACTGCATCAA	58.726	47.619	1.11	0.00	0.00	2.57
1358	1523	1.205417	TGAATCTCTCGCACTGCATCA	59.795	47.619	1.11	0.00	0.00	3.07
1359	1524	1.931906	TGAATCTCTCGCACTGCATC	58.068	50.000	1.11	0.00	0.00	3.91
1360	1525	2.616634	ATGAATCTCTCGCACTGCAT	57.383	45.000	1.11	0.00	0.00	3.96
1361	1526	2.391616	AATGAATCTCTCGCACTGCA	57.608	45.000	1.11	0.00	0.00	4.41
1362	1527	2.285486	CGAAATGAATCTCTCGCACTGC	60.285	50.000	0.00	0.00	0.00	4.40
1363	1528	2.283617	CCGAAATGAATCTCTCGCACTG	59.716	50.000	0.00	0.00	0.00	3.66
1364	1529	2.093973	ACCGAAATGAATCTCTCGCACT	60.094	45.455	0.00	0.00	0.00	4.40
1365	1530	2.271800	ACCGAAATGAATCTCTCGCAC	58.728	47.619	0.00	0.00	0.00	5.34
1366	1531	2.094234	TGACCGAAATGAATCTCTCGCA	60.094	45.455	0.00	0.00	0.00	5.10
1367	1532	2.537625	CTGACCGAAATGAATCTCTCGC	59.462	50.000	0.00	0.00	0.00	5.03
1368	1533	3.775202	ACTGACCGAAATGAATCTCTCG	58.225	45.455	0.00	0.00	0.00	4.04
1385	1550	9.349713	GAATGGGGAATATGTATTTTGTACTGA	57.650	33.333	0.00	0.00	0.00	3.41
1412	1580	3.497118	CAACAAAAACAAGAGACACGCA	58.503	40.909	0.00	0.00	0.00	5.24
1420	1588	2.645730	ACGCAGCAACAAAAACAAGA	57.354	40.000	0.00	0.00	0.00	3.02
1443	1611	1.303806	ACCCCCACATTGGCGTAAC	60.304	57.895	0.00	0.00	35.79	2.50
1477	1646	0.316204	GAAAATGCACACAGCCTGCT	59.684	50.000	0.00	0.00	44.83	4.24
1487	1656	5.049167	TGGTGTCAAATTCAGAAAATGCAC	58.951	37.500	0.00	12.55	0.00	4.57
1504	1673	3.012518	AGCATTGCAGTCTAATGGTGTC	58.987	45.455	11.91	0.00	42.63	3.67
1509	1701	2.022195	AGCCAGCATTGCAGTCTAATG	58.978	47.619	11.91	0.00	38.30	1.90
1511	1703	1.456296	CAGCCAGCATTGCAGTCTAA	58.544	50.000	11.91	0.00	0.00	2.10
1519	1711	1.093159	GTCTTCTCCAGCCAGCATTG	58.907	55.000	0.00	0.00	0.00	2.82
1524	1716	2.856222	AGTTTTGTCTTCTCCAGCCAG	58.144	47.619	0.00	0.00	0.00	4.85
1528	1720	6.150140	CCAATTCCTAGTTTTGTCTTCTCCAG	59.850	42.308	0.00	0.00	0.00	3.86
1547	1739	5.888161	AGTATCTGAACCATGGAACCAATTC	59.112	40.000	21.47	11.15	0.00	2.17
1549	1741	5.456921	AGTATCTGAACCATGGAACCAAT	57.543	39.130	21.47	8.69	0.00	3.16
1560	1752	5.239525	GGCCAATGTATGAAGTATCTGAACC	59.760	44.000	0.00	0.00	0.00	3.62
1566	1758	4.098914	TGGGGCCAATGTATGAAGTATC	57.901	45.455	4.39	0.00	0.00	2.24
1578	1770	1.006813	TCCTGTACAATGGGGCCAAT	58.993	50.000	4.39	0.00	0.00	3.16
1582	1774	0.039035	TGGTTCCTGTACAATGGGGC	59.961	55.000	0.00	0.00	0.00	5.80
1583	1775	1.074727	TGTGGTTCCTGTACAATGGGG	59.925	52.381	0.00	0.00	0.00	4.96
1584	1776	2.577606	TGTGGTTCCTGTACAATGGG	57.422	50.000	0.00	0.00	0.00	4.00
1585	1777	7.054124	ACTATAATGTGGTTCCTGTACAATGG	58.946	38.462	0.00	0.00	0.00	3.16
1586	1778	7.226720	GGACTATAATGTGGTTCCTGTACAATG	59.773	40.741	0.00	0.00	0.00	2.82
1587	1779	7.127339	AGGACTATAATGTGGTTCCTGTACAAT	59.873	37.037	0.00	0.00	0.00	2.71
1588	1780	6.442564	AGGACTATAATGTGGTTCCTGTACAA	59.557	38.462	0.00	0.00	0.00	2.41
1589	1781	5.962031	AGGACTATAATGTGGTTCCTGTACA	59.038	40.000	0.00	0.00	0.00	2.90
1590	1782	6.481434	AGGACTATAATGTGGTTCCTGTAC	57.519	41.667	0.00	0.00	0.00	2.90
1591	1783	8.792830	ATTAGGACTATAATGTGGTTCCTGTA	57.207	34.615	0.00	0.00	0.00	2.74
1592	1784	7.691993	ATTAGGACTATAATGTGGTTCCTGT	57.308	36.000	0.00	0.00	0.00	4.00
1593	1785	9.712305	CTAATTAGGACTATAATGTGGTTCCTG	57.288	37.037	4.42	0.00	0.00	3.86
1594	1786	8.881262	CCTAATTAGGACTATAATGTGGTTCCT	58.119	37.037	24.99	0.00	46.63	3.36
1595	1787	8.101419	CCCTAATTAGGACTATAATGTGGTTCC	58.899	40.741	29.75	0.00	46.63	3.62
1596	1788	8.657712	ACCCTAATTAGGACTATAATGTGGTTC	58.342	37.037	29.75	0.00	46.63	3.62
1597	1789	8.577164	ACCCTAATTAGGACTATAATGTGGTT	57.423	34.615	29.75	0.71	46.63	3.67
1598	1790	8.577164	AACCCTAATTAGGACTATAATGTGGT	57.423	34.615	29.75	13.11	46.63	4.16
1599	1791	8.656806	TGAACCCTAATTAGGACTATAATGTGG	58.343	37.037	29.75	12.53	46.63	4.17
1602	1794	9.167311	GCATGAACCCTAATTAGGACTATAATG	57.833	37.037	29.75	22.59	46.63	1.90
1603	1795	9.117223	AGCATGAACCCTAATTAGGACTATAAT	57.883	33.333	29.75	13.72	46.63	1.28
1604	1796	8.506196	AGCATGAACCCTAATTAGGACTATAA	57.494	34.615	29.75	12.23	46.63	0.98
1605	1797	8.506196	AAGCATGAACCCTAATTAGGACTATA	57.494	34.615	29.75	13.70	46.63	1.31
1606	1798	7.072454	TGAAGCATGAACCCTAATTAGGACTAT	59.928	37.037	29.75	16.01	46.63	2.12
1607	1799	6.385759	TGAAGCATGAACCCTAATTAGGACTA	59.614	38.462	29.75	14.63	46.63	2.59
1608	1800	5.191722	TGAAGCATGAACCCTAATTAGGACT	59.808	40.000	29.75	17.16	46.63	3.85
1613	1805	5.772825	GCATGAAGCATGAACCCTAATTA	57.227	39.130	11.31	0.00	43.81	1.40
1628	1820	3.388308	CTCGGATGGAGTTAGCATGAAG	58.612	50.000	0.00	0.00	38.02	3.02
1629	1821	2.483714	GCTCGGATGGAGTTAGCATGAA	60.484	50.000	0.00	0.00	45.03	2.57
1653	1877	1.678970	AGCGGGATCAACAAAGCCC	60.679	57.895	0.00	0.00	37.21	5.19
1659	1883	2.032634	GCGAACAGCGGGATCAACA	61.033	57.895	0.00	0.00	41.29	3.33
1670	1894	0.388907	CCTGCAAATTGGGCGAACAG	60.389	55.000	0.00	0.00	0.00	3.16
1671	1895	0.825425	TCCTGCAAATTGGGCGAACA	60.825	50.000	0.00	0.00	0.00	3.18
1672	1896	0.388520	GTCCTGCAAATTGGGCGAAC	60.389	55.000	0.00	0.00	0.00	3.95
1677	1903	1.066716	CCACATGTCCTGCAAATTGGG	60.067	52.381	0.00	0.00	0.00	4.12
1680	1906	1.269012	CCCCACATGTCCTGCAAATT	58.731	50.000	0.00	0.00	0.00	1.82
1707	1933	4.476628	TTTTGGACGGAGGGAGTATTAC	57.523	45.455	0.00	0.00	0.00	1.89
1710	1936	3.521937	TCATTTTTGGACGGAGGGAGTAT	59.478	43.478	0.00	0.00	0.00	2.12
1712	1938	1.702957	TCATTTTTGGACGGAGGGAGT	59.297	47.619	0.00	0.00	0.00	3.85
1725	1951	9.979578	TGTACTAAATCAGCAACATTCATTTTT	57.020	25.926	0.00	0.00	0.00	1.94
1731	1957	9.463443	AAAGTTTGTACTAAATCAGCAACATTC	57.537	29.630	0.00	0.00	33.17	2.67
1733	1959	8.413229	ACAAAGTTTGTACTAAATCAGCAACAT	58.587	29.630	19.59	0.00	43.27	2.71
1754	1980	6.467723	AAGTGTCGCTGATTTAGTACAAAG	57.532	37.500	0.00	0.00	0.00	2.77
1757	1983	6.263516	AGTAAGTGTCGCTGATTTAGTACA	57.736	37.500	0.00	0.00	0.00	2.90
1762	1988	4.693566	CCCAAAGTAAGTGTCGCTGATTTA	59.306	41.667	0.00	0.00	0.00	1.40
1764	1990	3.074412	CCCAAAGTAAGTGTCGCTGATT	58.926	45.455	0.00	0.00	0.00	2.57
1765	1991	2.301870	TCCCAAAGTAAGTGTCGCTGAT	59.698	45.455	0.00	0.00	0.00	2.90
1766	1992	1.689813	TCCCAAAGTAAGTGTCGCTGA	59.310	47.619	0.00	0.00	0.00	4.26
1767	1993	1.798813	GTCCCAAAGTAAGTGTCGCTG	59.201	52.381	0.00	0.00	0.00	5.18
1768	1994	1.604693	CGTCCCAAAGTAAGTGTCGCT	60.605	52.381	0.00	0.00	0.00	4.93
1770	1996	1.000060	TCCGTCCCAAAGTAAGTGTCG	60.000	52.381	0.00	0.00	0.00	4.35
1771	1997	2.612221	CCTCCGTCCCAAAGTAAGTGTC	60.612	54.545	0.00	0.00	0.00	3.67
1772	1998	1.346722	CCTCCGTCCCAAAGTAAGTGT	59.653	52.381	0.00	0.00	0.00	3.55
1773	1999	1.338769	CCCTCCGTCCCAAAGTAAGTG	60.339	57.143	0.00	0.00	0.00	3.16
1774	2000	0.981943	CCCTCCGTCCCAAAGTAAGT	59.018	55.000	0.00	0.00	0.00	2.24
1775	2001	1.207329	CTCCCTCCGTCCCAAAGTAAG	59.793	57.143	0.00	0.00	0.00	2.34
1776	2002	1.272807	CTCCCTCCGTCCCAAAGTAA	58.727	55.000	0.00	0.00	0.00	2.24
1777	2003	0.115745	ACTCCCTCCGTCCCAAAGTA	59.884	55.000	0.00	0.00	0.00	2.24
1778	2004	0.115745	TACTCCCTCCGTCCCAAAGT	59.884	55.000	0.00	0.00	0.00	2.66
1779	2005	0.824759	CTACTCCCTCCGTCCCAAAG	59.175	60.000	0.00	0.00	0.00	2.77
1780	2006	0.115745	ACTACTCCCTCCGTCCCAAA	59.884	55.000	0.00	0.00	0.00	3.28
1781	2007	1.002069	TACTACTCCCTCCGTCCCAA	58.998	55.000	0.00	0.00	0.00	4.12
1782	2008	0.549950	CTACTACTCCCTCCGTCCCA	59.450	60.000	0.00	0.00	0.00	4.37
1783	2009	0.550432	ACTACTACTCCCTCCGTCCC	59.450	60.000	0.00	0.00	0.00	4.46
1784	2010	2.433662	AACTACTACTCCCTCCGTCC	57.566	55.000	0.00	0.00	0.00	4.79
1785	2011	4.149511	ACTAACTACTACTCCCTCCGTC	57.850	50.000	0.00	0.00	0.00	4.79
1786	2012	4.582973	AACTAACTACTACTCCCTCCGT	57.417	45.455	0.00	0.00	0.00	4.69
1787	2013	5.679601	ACTAACTAACTACTACTCCCTCCG	58.320	45.833	0.00	0.00	0.00	4.63
1788	2014	8.271458	ACTAACTAACTAACTACTACTCCCTCC	58.729	40.741	0.00	0.00	0.00	4.30
1789	2015	9.679661	AACTAACTAACTAACTACTACTCCCTC	57.320	37.037	0.00	0.00	0.00	4.30
1849	2075	3.877508	GGTTATGCAAGTGCCTAGTAAGG	59.122	47.826	0.00	0.00	46.76	2.69
1882	2110	1.469251	GCTTCATGATTGCCTGCACAG	60.469	52.381	0.00	0.00	0.00	3.66
1925	2153	3.251729	CCTGTGGAAAGCATATCGGAATG	59.748	47.826	0.00	0.00	0.00	2.67
1955	2183	7.706179	GCAGATAATCAGATAGGATAAGAGTGC	59.294	40.741	0.00	0.00	0.00	4.40
1956	2184	8.747471	TGCAGATAATCAGATAGGATAAGAGTG	58.253	37.037	0.00	0.00	0.00	3.51
2034	2400	7.671302	AGAGTTTTGCAGTTATTCTCAGAGTA	58.329	34.615	0.00	0.00	0.00	2.59
2035	2401	6.529220	AGAGTTTTGCAGTTATTCTCAGAGT	58.471	36.000	0.00	0.00	0.00	3.24
2036	2402	6.873076	AGAGAGTTTTGCAGTTATTCTCAGAG	59.127	38.462	14.94	0.00	33.73	3.35
2037	2403	6.763355	AGAGAGTTTTGCAGTTATTCTCAGA	58.237	36.000	14.94	0.00	33.73	3.27
2038	2404	6.648310	TGAGAGAGTTTTGCAGTTATTCTCAG	59.352	38.462	14.94	0.00	35.08	3.35
2039	2405	6.524734	TGAGAGAGTTTTGCAGTTATTCTCA	58.475	36.000	14.94	13.58	36.97	3.27
2040	2406	6.648725	ACTGAGAGAGTTTTGCAGTTATTCTC	59.351	38.462	8.36	8.36	36.49	2.87
2041	2407	6.529220	ACTGAGAGAGTTTTGCAGTTATTCT	58.471	36.000	0.00	0.00	36.49	2.40
2042	2408	6.793492	ACTGAGAGAGTTTTGCAGTTATTC	57.207	37.500	0.00	0.00	36.49	1.75
2151	2518	0.686789	ATGTGCTGCCACTGTCACTA	59.313	50.000	0.00	0.00	42.54	2.74
2168	2535	7.970614	GCTTTAGGATAAGGTCAACAAAAGATG	59.029	37.037	0.00	0.00	0.00	2.90
2209	2576	1.474677	CCTATGTGGCCAGCTCTTCTG	60.475	57.143	5.11	0.00	42.49	3.02
2210	2577	0.835941	CCTATGTGGCCAGCTCTTCT	59.164	55.000	5.11	0.00	0.00	2.85
2240	2607	7.119699	CAGAAAGTAGGTGCAGATTAATGAACA	59.880	37.037	0.00	0.00	29.37	3.18
2241	2608	7.414540	CCAGAAAGTAGGTGCAGATTAATGAAC	60.415	40.741	0.00	0.00	0.00	3.18
2242	2609	6.599244	CCAGAAAGTAGGTGCAGATTAATGAA	59.401	38.462	0.00	0.00	0.00	2.57
2269	2641	5.591643	AGTTGTAACAGAAAGTATGTGCG	57.408	39.130	0.00	0.00	0.00	5.34
2309	2683	4.621460	TCGAATACTCGCTTGAAGAACTTG	59.379	41.667	0.00	0.00	45.04	3.16
2311	2685	4.156190	TCTCGAATACTCGCTTGAAGAACT	59.844	41.667	0.00	0.00	45.04	3.01
2317	2691	2.359214	AGCATCTCGAATACTCGCTTGA	59.641	45.455	0.00	0.00	45.04	3.02
2328	2702	2.742053	GCTGTTAACCAAGCATCTCGAA	59.258	45.455	11.89	0.00	0.00	3.71
2368	2742	9.567917	CATACGAGTATTGTGAACAAAATATCG	57.432	33.333	17.31	17.31	39.55	2.92
2403	2778	0.162933	ATTGTCACTAAACGTGCGCG	59.837	50.000	19.78	19.78	43.46	6.86
2506	2884	1.880186	CCAATTAACGGTGCCGCTT	59.120	52.632	10.87	7.04	44.19	4.68
2516	2894	0.380733	GCTACCAGCCGCCAATTAAC	59.619	55.000	0.00	0.00	34.48	2.01
2527	2905	0.179056	TATTCCAAGCGGCTACCAGC	60.179	55.000	1.35	0.00	41.46	4.85
2570	2948	2.578480	AGAGAACAAGGAAATCCCCTCC	59.422	50.000	0.00	0.00	34.95	4.30
2741	3120	2.754946	AACTGAATGGCTTGCCATTG	57.245	45.000	35.50	25.98	40.06	2.82
2844	3223	0.600255	AGAAAGCAGTTCGACGGTGG	60.600	55.000	0.00	0.00	41.52	4.61
2848	3227	1.858458	TCAACAGAAAGCAGTTCGACG	59.142	47.619	0.00	0.00	41.52	5.12
2900	3279	1.474077	GCTGAAGTTAACAGGGCATGG	59.526	52.381	8.61	0.00	36.09	3.66
2947	3326	4.023980	TGAGATTGTCCAGGTAATCGAGT	58.976	43.478	11.24	0.00	38.13	4.18
3010	3389	6.723298	AGACTATTCACCTCTGATTCGAAT	57.277	37.500	11.20	11.20	0.00	3.34
3030	3409	2.028567	AGAAGTGTGCTGAAGCCTAGAC	60.029	50.000	0.00	0.00	41.18	2.59
3031	3410	2.251818	AGAAGTGTGCTGAAGCCTAGA	58.748	47.619	0.00	0.00	41.18	2.43
3032	3411	2.758736	AGAAGTGTGCTGAAGCCTAG	57.241	50.000	0.00	0.00	41.18	3.02
3033	3412	3.492102	AAAGAAGTGTGCTGAAGCCTA	57.508	42.857	0.00	0.00	41.18	3.93
3035	3414	2.358898	TCAAAAGAAGTGTGCTGAAGCC	59.641	45.455	0.00	0.00	41.18	4.35
3036	3415	3.549625	CCTCAAAAGAAGTGTGCTGAAGC	60.550	47.826	0.00	0.00	42.50	3.86
3037	3416	3.879295	TCCTCAAAAGAAGTGTGCTGAAG	59.121	43.478	0.00	0.00	0.00	3.02
3040	3419	4.843220	ATTCCTCAAAAGAAGTGTGCTG	57.157	40.909	0.00	0.00	0.00	4.41
3050	3429	9.330063	TGTGCTGATATAACTATTCCTCAAAAG	57.670	33.333	0.00	0.00	0.00	2.27
3051	3430	9.109393	GTGTGCTGATATAACTATTCCTCAAAA	57.891	33.333	0.00	0.00	0.00	2.44
3052	3431	8.486210	AGTGTGCTGATATAACTATTCCTCAAA	58.514	33.333	0.00	0.00	0.00	2.69
3053	3432	8.023021	AGTGTGCTGATATAACTATTCCTCAA	57.977	34.615	0.00	0.00	0.00	3.02
3054	3433	7.603180	AGTGTGCTGATATAACTATTCCTCA	57.397	36.000	0.00	0.00	0.00	3.86
3055	3434	8.144478	TCAAGTGTGCTGATATAACTATTCCTC	58.856	37.037	0.00	0.00	0.00	3.71
3057	3436	8.662781	TTCAAGTGTGCTGATATAACTATTCC	57.337	34.615	0.00	0.00	0.00	3.01
3061	3440	9.750125	CTACATTCAAGTGTGCTGATATAACTA	57.250	33.333	0.00	0.00	33.62	2.24
3062	3441	7.225538	GCTACATTCAAGTGTGCTGATATAACT	59.774	37.037	0.00	0.00	33.62	2.24
3063	3442	7.225538	AGCTACATTCAAGTGTGCTGATATAAC	59.774	37.037	0.00	0.00	36.13	1.89
3064	3443	7.225341	CAGCTACATTCAAGTGTGCTGATATAA	59.775	37.037	18.07	0.00	45.89	0.98
3067	3446	4.872124	CAGCTACATTCAAGTGTGCTGATA	59.128	41.667	18.07	0.00	45.89	2.15
3068	3447	3.688185	CAGCTACATTCAAGTGTGCTGAT	59.312	43.478	18.07	0.00	45.89	2.90
3069	3448	3.069289	CAGCTACATTCAAGTGTGCTGA	58.931	45.455	18.07	0.00	45.89	4.26
3071	3450	3.407424	TCAGCTACATTCAAGTGTGCT	57.593	42.857	0.00	0.00	37.13	4.40
3072	3451	4.222114	GTTTCAGCTACATTCAAGTGTGC	58.778	43.478	0.00	0.00	33.62	4.57
3074	3453	3.821033	GGGTTTCAGCTACATTCAAGTGT	59.179	43.478	0.00	0.00	36.13	3.55
3075	3454	3.820467	TGGGTTTCAGCTACATTCAAGTG	59.180	43.478	0.00	0.00	0.00	3.16
3076	3455	4.098914	TGGGTTTCAGCTACATTCAAGT	57.901	40.909	0.00	0.00	0.00	3.16
3077	3456	4.946157	AGATGGGTTTCAGCTACATTCAAG	59.054	41.667	0.00	0.00	40.80	3.02
3082	3544	5.574188	AGAAAAGATGGGTTTCAGCTACAT	58.426	37.500	0.00	0.00	41.91	2.29
3083	3545	4.985538	AGAAAAGATGGGTTTCAGCTACA	58.014	39.130	0.00	0.00	41.91	2.74
3084	3546	5.003804	TGAGAAAAGATGGGTTTCAGCTAC	58.996	41.667	0.00	0.00	41.91	3.58
3110	3578	6.202188	CGGTTAGCCAAATACTATTGTACTGG	59.798	42.308	10.93	10.93	37.73	4.00
3130	3598	2.779282	CACATGATGCCAGCGGTTA	58.221	52.632	0.00	0.00	0.00	2.85
3131	3599	3.594568	CACATGATGCCAGCGGTT	58.405	55.556	0.00	0.00	0.00	4.44
3140	3608	3.158103	GCAAAACGTTTGCACATGATG	57.842	42.857	15.46	7.48	44.34	3.07
3165	3695	0.818296	AGCTGACATACACTCGGTCC	59.182	55.000	0.00	0.00	0.00	4.46
3177	3707	3.973516	ACGTTCGGCGAGCTGACA	61.974	61.111	21.10	0.00	44.77	3.58
3213	3743	1.070821	CGAATGTGCGCTTCTTCTCA	58.929	50.000	9.73	0.00	0.00	3.27
3237	3767	2.603652	GGGGAGGCCGTCCTTTCTT	61.604	63.158	17.51	0.00	46.06	2.52
3273	3803	2.092968	CGGAGGGAAATGGATGAACAGA	60.093	50.000	0.00	0.00	0.00	3.41
3274	3804	2.292267	CGGAGGGAAATGGATGAACAG	58.708	52.381	0.00	0.00	0.00	3.16
3275	3805	1.633432	ACGGAGGGAAATGGATGAACA	59.367	47.619	0.00	0.00	0.00	3.18
3296	3834	1.804748	CTGGTTTCGTTTACTGGAGGC	59.195	52.381	0.00	0.00	0.00	4.70
3298	3836	1.804748	GGCTGGTTTCGTTTACTGGAG	59.195	52.381	0.00	0.00	0.00	3.86
3299	3837	1.141254	TGGCTGGTTTCGTTTACTGGA	59.859	47.619	0.00	0.00	0.00	3.86
3304	3842	0.179051	ACCGTGGCTGGTTTCGTTTA	60.179	50.000	0.00	0.00	39.99	2.01
3305	3843	1.452470	ACCGTGGCTGGTTTCGTTT	60.452	52.632	0.00	0.00	39.99	3.60
3306	3844	2.184167	CACCGTGGCTGGTTTCGTT	61.184	57.895	0.00	0.00	41.38	3.85
3307	3845	2.030490	TACACCGTGGCTGGTTTCGT	62.030	55.000	3.03	0.00	41.38	3.85
3312	3850	1.261938	TGCTATACACCGTGGCTGGT	61.262	55.000	3.03	0.00	45.21	4.00
3317	3855	1.730064	GTGTGTTGCTATACACCGTGG	59.270	52.381	15.36	0.00	46.13	4.94
3320	3858	2.954316	TCAGTGTGTTGCTATACACCG	58.046	47.619	20.83	13.31	44.69	4.94
3325	3863	6.349280	GCTGGAAATTTCAGTGTGTTGCTATA	60.349	38.462	19.49	0.00	34.89	1.31
3326	3864	5.565439	GCTGGAAATTTCAGTGTGTTGCTAT	60.565	40.000	19.49	0.00	34.89	2.97
3327	3865	4.261572	GCTGGAAATTTCAGTGTGTTGCTA	60.262	41.667	19.49	0.00	34.89	3.49
3328	3866	3.491447	GCTGGAAATTTCAGTGTGTTGCT	60.491	43.478	19.49	0.00	34.89	3.91
3329	3867	2.796593	GCTGGAAATTTCAGTGTGTTGC	59.203	45.455	19.49	7.59	34.89	4.17
3330	3868	3.068590	AGGCTGGAAATTTCAGTGTGTTG	59.931	43.478	19.49	2.10	34.89	3.33
3332	3870	2.949447	AGGCTGGAAATTTCAGTGTGT	58.051	42.857	19.49	0.00	34.89	3.72
3333	3871	6.949352	ATATAGGCTGGAAATTTCAGTGTG	57.051	37.500	19.49	5.81	34.89	3.82
3335	3873	6.742109	CCAATATAGGCTGGAAATTTCAGTG	58.258	40.000	19.49	9.64	34.35	3.66
3351	3889	3.558931	TCCACACCACTGCCAATATAG	57.441	47.619	0.00	0.00	0.00	1.31
3355	3893	0.827507	GGTTCCACACCACTGCCAAT	60.828	55.000	0.00	0.00	46.42	3.16
3391	3952	1.413767	CGAAGTCCGCCATCGTCTTG	61.414	60.000	0.00	0.00	31.77	3.02
3526	4087	2.591429	TGGTCGCTGCAGTTGGTG	60.591	61.111	16.64	0.00	0.00	4.17
3571	4132	3.607987	CGCTACACGCTAGCACGC	61.608	66.667	16.45	7.96	40.39	5.34
3636	4205	0.827925	AAGCGACTCCCTGACTGACA	60.828	55.000	0.00	0.00	0.00	3.58
3683	4261	4.141801	CGGATCCAACCAAACCTACTGATA	60.142	45.833	13.41	0.00	0.00	2.15
3770	4348	3.530910	AAACCAGGTCTCGGCACCG	62.531	63.158	1.73	1.73	41.90	4.94
3771	4349	1.671379	GAAACCAGGTCTCGGCACC	60.671	63.158	0.00	0.00	36.58	5.01
3772	4350	0.951040	CAGAAACCAGGTCTCGGCAC	60.951	60.000	0.00	0.00	0.00	5.01
3773	4351	1.371183	CAGAAACCAGGTCTCGGCA	59.629	57.895	0.00	0.00	0.00	5.69
3774	4352	1.376037	CCAGAAACCAGGTCTCGGC	60.376	63.158	0.00	0.00	0.00	5.54
3775	4353	0.685097	TTCCAGAAACCAGGTCTCGG	59.315	55.000	0.00	0.00	0.00	4.63
3776	4354	2.350522	CATTCCAGAAACCAGGTCTCG	58.649	52.381	0.00	0.00	0.00	4.04
3777	4355	2.087646	GCATTCCAGAAACCAGGTCTC	58.912	52.381	0.00	0.00	0.00	3.36
3778	4356	1.272147	GGCATTCCAGAAACCAGGTCT	60.272	52.381	0.00	0.00	0.00	3.85
3779	4357	1.177401	GGCATTCCAGAAACCAGGTC	58.823	55.000	0.00	0.00	0.00	3.85
3780	4358	0.482446	TGGCATTCCAGAAACCAGGT	59.518	50.000	0.00	0.00	37.47	4.00
3781	4359	3.362040	TGGCATTCCAGAAACCAGG	57.638	52.632	2.31	0.00	37.47	4.45
3829	4407	1.197721	GATAAATGGCGCCCTTCATCG	59.802	52.381	26.77	0.00	0.00	3.84
3831	4409	1.202758	TCGATAAATGGCGCCCTTCAT	60.203	47.619	26.77	12.70	0.00	2.57
3842	4420	9.628983	CGATGCTACATTATGAATCGATAAATG	57.371	33.333	15.54	15.54	39.30	2.32
3849	4427	4.032217	GGCTCGATGCTACATTATGAATCG	59.968	45.833	0.00	8.28	42.39	3.34
3852	4430	4.335400	TGGCTCGATGCTACATTATGAA	57.665	40.909	0.00	0.00	42.39	2.57
3859	4437	3.069443	TGATTGTATGGCTCGATGCTACA	59.931	43.478	6.78	6.05	42.39	2.74
3860	4438	3.430218	GTGATTGTATGGCTCGATGCTAC	59.570	47.826	6.78	4.02	42.39	3.58
3863	4441	2.212652	TGTGATTGTATGGCTCGATGC	58.787	47.619	0.00	0.00	41.94	3.91
3864	4442	4.512571	TCATTGTGATTGTATGGCTCGATG	59.487	41.667	0.00	0.00	0.00	3.84
3872	4450	7.095649	CGGGTGTATACTCATTGTGATTGTATG	60.096	40.741	4.17	0.00	0.00	2.39
3892	4470	2.257409	CTTATGCAGAGGCCGGGTGT	62.257	60.000	2.18	0.00	40.13	4.16
3911	4489	4.055360	TGTGTTGGCTATATGCATCGTAC	58.945	43.478	0.19	0.00	45.15	3.67
3914	4492	2.871633	TGTGTGTTGGCTATATGCATCG	59.128	45.455	0.19	0.00	45.15	3.84
3919	4497	4.025730	GTGATCGTGTGTGTTGGCTATATG	60.026	45.833	0.00	0.00	0.00	1.78
3921	4499	3.517602	GTGATCGTGTGTGTTGGCTATA	58.482	45.455	0.00	0.00	0.00	1.31
3923	4501	1.790755	GTGATCGTGTGTGTTGGCTA	58.209	50.000	0.00	0.00	0.00	3.93
3948	4526	4.319766	GGTCTTGTATGACTTTGCTGTGTG	60.320	45.833	0.00	0.00	37.16	3.82
3965	4543	2.101582	ACCTAGCATAGCTTCGGTCTTG	59.898	50.000	0.00	0.00	40.44	3.02
3966	4544	2.101582	CACCTAGCATAGCTTCGGTCTT	59.898	50.000	8.96	0.00	38.52	3.01
3967	4545	1.683917	CACCTAGCATAGCTTCGGTCT	59.316	52.381	8.96	0.00	38.52	3.85
3968	4546	1.681793	TCACCTAGCATAGCTTCGGTC	59.318	52.381	8.96	0.00	38.52	4.79
3969	4547	1.776662	TCACCTAGCATAGCTTCGGT	58.223	50.000	0.00	1.96	40.22	4.69
3970	4548	2.546795	CCTTCACCTAGCATAGCTTCGG	60.547	54.545	0.00	1.32	40.44	4.30
3971	4549	2.546795	CCCTTCACCTAGCATAGCTTCG	60.547	54.545	0.00	0.00	40.44	3.79
3972	4550	2.224402	CCCCTTCACCTAGCATAGCTTC	60.224	54.545	0.00	0.00	40.44	3.86
3973	4551	1.771255	CCCCTTCACCTAGCATAGCTT	59.229	52.381	0.00	0.00	40.44	3.74
3974	4552	1.062121	TCCCCTTCACCTAGCATAGCT	60.062	52.381	0.00	0.00	43.41	3.32
3975	4553	1.424638	TCCCCTTCACCTAGCATAGC	58.575	55.000	0.00	0.00	37.37	2.97
3976	4554	4.503714	TTTTCCCCTTCACCTAGCATAG	57.496	45.455	0.00	0.00	38.80	2.23
3977	4555	4.938575	TTTTTCCCCTTCACCTAGCATA	57.061	40.909	0.00	0.00	0.00	3.14
3978	4556	3.825908	TTTTTCCCCTTCACCTAGCAT	57.174	42.857	0.00	0.00	0.00	3.79
3995	4573	7.647228	TGTTTTCTTTGCTTTGCTTTCTTTTT	58.353	26.923	0.00	0.00	0.00	1.94
3996	4574	7.200778	TGTTTTCTTTGCTTTGCTTTCTTTT	57.799	28.000	0.00	0.00	0.00	2.27
3997	4575	6.799926	TGTTTTCTTTGCTTTGCTTTCTTT	57.200	29.167	0.00	0.00	0.00	2.52
3998	4576	6.650390	TCTTGTTTTCTTTGCTTTGCTTTCTT	59.350	30.769	0.00	0.00	0.00	2.52
3999	4577	6.165577	TCTTGTTTTCTTTGCTTTGCTTTCT	58.834	32.000	0.00	0.00	0.00	2.52
4000	4578	6.407475	TCTTGTTTTCTTTGCTTTGCTTTC	57.593	33.333	0.00	0.00	0.00	2.62
4001	4579	6.799926	TTCTTGTTTTCTTTGCTTTGCTTT	57.200	29.167	0.00	0.00	0.00	3.51
4002	4580	6.799926	TTTCTTGTTTTCTTTGCTTTGCTT	57.200	29.167	0.00	0.00	0.00	3.91
4003	4581	6.799926	TTTTCTTGTTTTCTTTGCTTTGCT	57.200	29.167	0.00	0.00	0.00	3.91
4024	4602	7.647228	TGTTTTCTTTGCTTTGCTTTCTTTTT	58.353	26.923	0.00	0.00	0.00	1.94
4025	4603	7.200778	TGTTTTCTTTGCTTTGCTTTCTTTT	57.799	28.000	0.00	0.00	0.00	2.27
4026	4604	6.799926	TGTTTTCTTTGCTTTGCTTTCTTT	57.200	29.167	0.00	0.00	0.00	2.52
4027	4605	6.204495	TGTTGTTTTCTTTGCTTTGCTTTCTT	59.796	30.769	0.00	0.00	0.00	2.52
4028	4606	5.700373	TGTTGTTTTCTTTGCTTTGCTTTCT	59.300	32.000	0.00	0.00	0.00	2.52
4029	4607	5.925907	TGTTGTTTTCTTTGCTTTGCTTTC	58.074	33.333	0.00	0.00	0.00	2.62
4030	4608	5.938438	TGTTGTTTTCTTTGCTTTGCTTT	57.062	30.435	0.00	0.00	0.00	3.51
4031	4609	5.938438	TTGTTGTTTTCTTTGCTTTGCTT	57.062	30.435	0.00	0.00	0.00	3.91
4032	4610	6.149142	TCAATTGTTGTTTTCTTTGCTTTGCT	59.851	30.769	5.13	0.00	0.00	3.91
4033	4611	6.313252	TCAATTGTTGTTTTCTTTGCTTTGC	58.687	32.000	5.13	0.00	0.00	3.68
4034	4612	8.176365	TCATCAATTGTTGTTTTCTTTGCTTTG	58.824	29.630	14.58	0.00	0.00	2.77
4035	4613	8.266392	TCATCAATTGTTGTTTTCTTTGCTTT	57.734	26.923	14.58	0.00	0.00	3.51
4036	4614	7.846644	TCATCAATTGTTGTTTTCTTTGCTT	57.153	28.000	14.58	0.00	0.00	3.91
4037	4615	9.715121	ATATCATCAATTGTTGTTTTCTTTGCT	57.285	25.926	14.58	0.00	0.00	3.91
4046	4624	9.844790	CACTGTTGTATATCATCAATTGTTGTT	57.155	29.630	14.58	9.96	0.00	2.83
4047	4625	8.461222	CCACTGTTGTATATCATCAATTGTTGT	58.539	33.333	14.58	6.61	0.00	3.32
4048	4626	7.433131	GCCACTGTTGTATATCATCAATTGTTG	59.567	37.037	9.80	9.80	0.00	3.33
4049	4627	7.416664	GGCCACTGTTGTATATCATCAATTGTT	60.417	37.037	5.13	0.00	0.00	2.83
4050	4628	6.039717	GGCCACTGTTGTATATCATCAATTGT	59.960	38.462	5.13	0.00	0.00	2.71
4051	4629	6.039605	TGGCCACTGTTGTATATCATCAATTG	59.960	38.462	0.00	0.00	0.00	2.32
4052	4630	6.128486	TGGCCACTGTTGTATATCATCAATT	58.872	36.000	0.00	0.00	0.00	2.32
4053	4631	5.693961	TGGCCACTGTTGTATATCATCAAT	58.306	37.500	0.00	0.00	0.00	2.57
4054	4632	5.109500	TGGCCACTGTTGTATATCATCAA	57.891	39.130	0.00	0.00	0.00	2.57
4055	4633	4.769345	TGGCCACTGTTGTATATCATCA	57.231	40.909	0.00	0.00	0.00	3.07
4056	4634	4.389992	CGATGGCCACTGTTGTATATCATC	59.610	45.833	8.16	0.00	0.00	2.92
4057	4635	4.318332	CGATGGCCACTGTTGTATATCAT	58.682	43.478	8.16	0.00	0.00	2.45
4058	4636	3.494223	CCGATGGCCACTGTTGTATATCA	60.494	47.826	8.16	0.00	0.00	2.15
4059	4637	3.067106	CCGATGGCCACTGTTGTATATC	58.933	50.000	8.16	0.00	0.00	1.63
4060	4638	2.810400	GCCGATGGCCACTGTTGTATAT	60.810	50.000	8.16	0.00	44.06	0.86
4061	4639	1.474320	GCCGATGGCCACTGTTGTATA	60.474	52.381	8.16	0.00	44.06	1.47
4062	4640	0.748005	GCCGATGGCCACTGTTGTAT	60.748	55.000	8.16	0.00	44.06	2.29
4073	4651	7.459593	TCAATAAATGGTTGATGCCGATGGC	62.460	44.000	0.00	0.00	38.69	4.40
4083	4661	6.489700	TCTTTCTGCTGTCAATAAATGGTTGA	59.510	34.615	0.00	0.00	33.46	3.18
4084	4662	6.583806	GTCTTTCTGCTGTCAATAAATGGTTG	59.416	38.462	0.00	0.00	0.00	3.77
4087	4665	6.506500	AGTCTTTCTGCTGTCAATAAATGG	57.493	37.500	0.00	0.00	0.00	3.16
4088	4666	7.063426	TCGTAGTCTTTCTGCTGTCAATAAATG	59.937	37.037	0.00	0.00	0.00	2.32
4089	4667	7.097192	TCGTAGTCTTTCTGCTGTCAATAAAT	58.903	34.615	0.00	0.00	0.00	1.40
4093	4707	4.521130	TCGTAGTCTTTCTGCTGTCAAT	57.479	40.909	0.00	0.00	0.00	2.57
4103	4717	4.382160	CGAGAACCTGTTTCGTAGTCTTTC	59.618	45.833	6.50	0.00	39.47	2.62
4117	4731	4.446051	GTCAAGAGACTTTTCGAGAACCTG	59.554	45.833	0.00	0.00	41.64	4.00
4126	4740	7.172361	AGTCTTTATGCTGTCAAGAGACTTTTC	59.828	37.037	0.00	0.00	45.20	2.29
4167	4781	3.507162	TCCTGAAGACATTGCCTTTCA	57.493	42.857	0.00	0.00	0.00	2.69
4168	4782	3.192212	CCTTCCTGAAGACATTGCCTTTC	59.808	47.826	8.46	0.00	40.79	2.62
4175	4789	4.065789	GTCGTTTCCTTCCTGAAGACATT	58.934	43.478	8.46	0.00	40.79	2.71
4191	4805	2.862776	CGGCGTTCGTGTGTCGTTT	61.863	57.895	0.00	0.00	40.80	3.60
4209	4823	0.107654	AGGTTGGATCTAGCAACGGC	60.108	55.000	7.09	0.00	41.61	5.68
4211	4825	1.802880	CGGAGGTTGGATCTAGCAACG	60.803	57.143	7.09	0.00	0.00	4.10
4212	4826	1.480954	TCGGAGGTTGGATCTAGCAAC	59.519	52.381	5.12	5.12	0.00	4.17
4213	4827	1.860641	TCGGAGGTTGGATCTAGCAA	58.139	50.000	0.00	0.00	0.00	3.91
4214	4828	1.757118	CTTCGGAGGTTGGATCTAGCA	59.243	52.381	0.00	0.00	0.00	3.49
4215	4829	1.069358	CCTTCGGAGGTTGGATCTAGC	59.931	57.143	0.00	0.00	38.32	3.42
4217	4831	1.120530	GCCTTCGGAGGTTGGATCTA	58.879	55.000	12.53	0.00	45.44	1.98
4218	4832	1.627297	GGCCTTCGGAGGTTGGATCT	61.627	60.000	12.53	0.00	45.44	2.75
4254	4939	2.125512	CGGACTTGCTCTTCGGGG	60.126	66.667	0.00	0.00	0.00	5.73
4257	4942	0.459237	ATGCTCGGACTTGCTCTTCG	60.459	55.000	0.00	0.00	0.00	3.79
4263	4948	3.438297	TTAGAGTATGCTCGGACTTGC	57.562	47.619	5.08	0.00	46.03	4.01
4318	5003	6.480763	TGTTGGTTATACCTGACAATGATGT	58.519	36.000	0.00	0.00	40.14	3.06
4320	5005	6.603201	CCTTGTTGGTTATACCTGACAATGAT	59.397	38.462	14.27	0.00	40.98	2.45
4338	5023	0.035056	CCTAGGTCTGGCCCTTGTTG	60.035	60.000	0.00	0.00	38.26	3.33
4347	5032	1.004394	GGGTGAAAACCCTAGGTCTGG	59.996	57.143	8.29	0.00	46.39	3.86
4375	5060	2.040012	ACTTCTCGAGTACCTGGTCTCA	59.960	50.000	13.13	10.26	36.65	3.27
4396	5081	1.760613	GGATGACTCGATTGGGTGGTA	59.239	52.381	0.00	0.00	0.00	3.25
4416	5101	3.265791	GCAAGTGGAGGAGACAACATAG	58.734	50.000	0.00	0.00	0.00	2.23
4468	5155	3.016474	GACCTTTGCTCGCGTCAGC	62.016	63.158	12.50	12.50	40.13	4.26
4473	5160	2.099062	GCATGACCTTTGCTCGCG	59.901	61.111	0.00	0.00	37.14	5.87
4492	5179	0.575859	CTCATCAGCTTGATCGTGCG	59.424	55.000	4.46	0.00	34.28	5.34
4499	5186	0.390340	GACACGGCTCATCAGCTTGA	60.390	55.000	0.00	0.00	46.03	3.02
4540	5227	3.058016	TCCTCGTCGTTAATGACTTCGTT	60.058	43.478	22.24	0.00	36.71	3.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.