Multiple sequence alignment - TraesCS1D01G416200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G416200 chr1D 100.000 3365 0 0 1 3365 475196469 475193105 0.000000e+00 6215
1 TraesCS1D01G416200 chr1D 81.572 1183 188 21 355 1532 473406702 473407859 0.000000e+00 950
2 TraesCS1D01G416200 chr1D 97.229 397 9 2 2970 3365 427478724 427479119 0.000000e+00 671
3 TraesCS1D01G416200 chr1D 82.550 298 52 0 2044 2341 475176764 475176467 2.570000e-66 263
4 TraesCS1D01G416200 chr1B 93.304 3002 149 23 1 2974 660997606 660994629 0.000000e+00 4383
5 TraesCS1D01G416200 chr1B 84.522 2623 321 49 340 2908 660723284 660720693 0.000000e+00 2516
6 TraesCS1D01G416200 chr1B 87.020 1772 185 18 204 1963 660950573 660948835 0.000000e+00 1956
7 TraesCS1D01G416200 chr1B 83.480 2052 303 25 326 2362 660746435 660744405 0.000000e+00 1879
8 TraesCS1D01G416200 chr1B 87.215 1666 188 19 314 1970 661055239 661053590 0.000000e+00 1873
9 TraesCS1D01G416200 chr1B 86.976 1528 169 19 875 2392 660640412 660638905 0.000000e+00 1692
10 TraesCS1D01G416200 chr1B 84.967 1643 197 20 342 1975 660880797 660879196 0.000000e+00 1620
11 TraesCS1D01G416200 chr1B 84.699 1660 210 19 323 1975 661122557 661120935 0.000000e+00 1618
12 TraesCS1D01G416200 chr1B 84.029 1653 231 24 323 1963 660684229 660682598 0.000000e+00 1559
13 TraesCS1D01G416200 chr1B 83.091 1650 240 22 329 1963 660964157 660962532 0.000000e+00 1465
14 TraesCS1D01G416200 chr1B 85.531 1092 130 15 872 1956 660914435 660913365 0.000000e+00 1116
15 TraesCS1D01G416200 chr1B 81.311 1220 192 24 323 1534 658354318 658355509 0.000000e+00 957
16 TraesCS1D01G416200 chr1B 92.872 477 28 4 2502 2974 660638853 660638379 0.000000e+00 688
17 TraesCS1D01G416200 chr1B 82.215 298 53 0 2044 2341 660682550 660682253 1.200000e-64 257
18 TraesCS1D01G416200 chr1B 81.879 298 54 0 2044 2341 660948787 660948490 5.570000e-63 252
19 TraesCS1D01G416200 chr1B 81.544 298 55 0 2044 2341 660962487 660962190 2.590000e-61 246
20 TraesCS1D01G416200 chr1A 83.569 1625 233 24 344 1956 570862191 570860589 0.000000e+00 1491
21 TraesCS1D01G416200 chr1A 86.231 995 104 10 323 1316 570878555 570877593 0.000000e+00 1048
22 TraesCS1D01G416200 chr1A 84.635 768 96 12 1214 1975 570877590 570876839 0.000000e+00 745
23 TraesCS1D01G416200 chr1A 76.900 671 111 29 2043 2702 570876804 570876167 1.160000e-89 340
24 TraesCS1D01G416200 chr7D 95.663 392 15 2 2974 3365 125967247 125967636 2.200000e-176 628
25 TraesCS1D01G416200 chr7D 94.776 402 20 1 2965 3365 29467488 29467889 2.850000e-175 625
26 TraesCS1D01G416200 chr2D 95.178 394 16 3 2974 3365 41263062 41263454 1.330000e-173 619
27 TraesCS1D01G416200 chr2D 94.416 394 19 3 2974 3365 41819411 41819803 1.340000e-168 603
28 TraesCS1D01G416200 chr6D 94.937 395 19 1 2972 3365 11416796 11417190 4.770000e-173 617
29 TraesCS1D01G416200 chr3A 92.683 410 28 2 2957 3365 14365902 14365494 1.040000e-164 590
30 TraesCS1D01G416200 chr5A 91.816 391 31 1 2973 3362 540689520 540689130 8.210000e-151 544
31 TraesCS1D01G416200 chr3B 91.837 392 27 3 2974 3363 733163117 733162729 2.950000e-150 542


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G416200 chr1D 475193105 475196469 3364 True 6215.0 6215 100.000000 1 3365 1 chr1D.!!$R2 3364
1 TraesCS1D01G416200 chr1D 473406702 473407859 1157 False 950.0 950 81.572000 355 1532 1 chr1D.!!$F2 1177
2 TraesCS1D01G416200 chr1B 660994629 660997606 2977 True 4383.0 4383 93.304000 1 2974 1 chr1B.!!$R5 2973
3 TraesCS1D01G416200 chr1B 660720693 660723284 2591 True 2516.0 2516 84.522000 340 2908 1 chr1B.!!$R1 2568
4 TraesCS1D01G416200 chr1B 660744405 660746435 2030 True 1879.0 1879 83.480000 326 2362 1 chr1B.!!$R2 2036
5 TraesCS1D01G416200 chr1B 661053590 661055239 1649 True 1873.0 1873 87.215000 314 1970 1 chr1B.!!$R6 1656
6 TraesCS1D01G416200 chr1B 660879196 660880797 1601 True 1620.0 1620 84.967000 342 1975 1 chr1B.!!$R3 1633
7 TraesCS1D01G416200 chr1B 661120935 661122557 1622 True 1618.0 1618 84.699000 323 1975 1 chr1B.!!$R7 1652
8 TraesCS1D01G416200 chr1B 660638379 660640412 2033 True 1190.0 1692 89.924000 875 2974 2 chr1B.!!$R8 2099
9 TraesCS1D01G416200 chr1B 660913365 660914435 1070 True 1116.0 1116 85.531000 872 1956 1 chr1B.!!$R4 1084
10 TraesCS1D01G416200 chr1B 660948490 660950573 2083 True 1104.0 1956 84.449500 204 2341 2 chr1B.!!$R10 2137
11 TraesCS1D01G416200 chr1B 658354318 658355509 1191 False 957.0 957 81.311000 323 1534 1 chr1B.!!$F1 1211
12 TraesCS1D01G416200 chr1B 660682253 660684229 1976 True 908.0 1559 83.122000 323 2341 2 chr1B.!!$R9 2018
13 TraesCS1D01G416200 chr1B 660962190 660964157 1967 True 855.5 1465 82.317500 329 2341 2 chr1B.!!$R11 2012
14 TraesCS1D01G416200 chr1A 570860589 570862191 1602 True 1491.0 1491 83.569000 344 1956 1 chr1A.!!$R1 1612
15 TraesCS1D01G416200 chr1A 570876167 570878555 2388 True 711.0 1048 82.588667 323 2702 3 chr1A.!!$R2 2379

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
539 541 1.676006 GGTGAACCCTATCAAATGGCG 59.324 52.381 0.0 0.0 0.00 5.69 F
1707 1834 0.038526 AGCGTCTGTTCTGTAACCCG 60.039 55.000 0.0 0.0 34.49 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1777 1913 0.114954 TTTTGAAGGGAGGCCATGCT 59.885 50.0 5.01 0.0 0.0 3.79 R
3017 3204 0.033208 GGGGATGTGGGAAATGCTGA 60.033 55.0 0.00 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 9.976511 GGGAATAACTACTATTTTTAAATGGCC 57.023 33.333 0.00 0.00 29.89 5.36
52 53 9.205513 ACTATTTTTAAATGGCCAGATCAGATT 57.794 29.630 13.05 0.00 30.88 2.40
117 118 6.184789 AGCCTTATCTATTTTGAAACCGGAA 58.815 36.000 9.46 0.00 0.00 4.30
151 152 7.106439 TGATGCAAAAGAAGTTACCTGAAAA 57.894 32.000 0.00 0.00 0.00 2.29
227 228 4.273148 AGCCCTAATCTATTTGTAGCCG 57.727 45.455 0.00 0.00 0.00 5.52
237 238 7.592885 ATCTATTTGTAGCCGGAGTAGTTTA 57.407 36.000 5.05 0.00 0.00 2.01
301 302 8.887264 AGTACAAAATATTTGTGGGGAATACA 57.113 30.769 16.47 0.00 34.11 2.29
313 314 6.315714 TGTGGGGAATACAAATTAGTTTCCA 58.684 36.000 10.00 0.00 38.05 3.53
314 315 6.957020 TGTGGGGAATACAAATTAGTTTCCAT 59.043 34.615 10.00 0.00 38.05 3.41
315 316 7.456269 TGTGGGGAATACAAATTAGTTTCCATT 59.544 33.333 10.00 0.00 38.05 3.16
316 317 7.763985 GTGGGGAATACAAATTAGTTTCCATTG 59.236 37.037 10.00 0.00 38.05 2.82
317 318 6.761242 GGGGAATACAAATTAGTTTCCATTGC 59.239 38.462 10.00 0.00 38.05 3.56
318 319 7.327214 GGGAATACAAATTAGTTTCCATTGCA 58.673 34.615 10.00 0.00 38.05 4.08
319 320 7.821846 GGGAATACAAATTAGTTTCCATTGCAA 59.178 33.333 0.00 0.00 38.05 4.08
320 321 9.382275 GGAATACAAATTAGTTTCCATTGCAAT 57.618 29.630 5.99 5.99 36.64 3.56
539 541 1.676006 GGTGAACCCTATCAAATGGCG 59.324 52.381 0.00 0.00 0.00 5.69
573 575 4.877282 TGTTGATTCCCGAAAATTGTTCC 58.123 39.130 0.00 0.00 0.00 3.62
591 593 3.973206 TCCTTAAGAGAACATTCCGCA 57.027 42.857 3.36 0.00 0.00 5.69
606 608 3.391506 TCCGCATAGATGATCCTTGTG 57.608 47.619 0.00 0.00 0.00 3.33
766 771 4.192317 GGTACTGGTCCTTTGCTTGATAG 58.808 47.826 0.00 0.00 0.00 2.08
941 946 2.767644 TCCTTGATAGACGATGGGGA 57.232 50.000 0.00 0.00 0.00 4.81
942 947 2.598565 TCCTTGATAGACGATGGGGAG 58.401 52.381 0.00 0.00 0.00 4.30
943 948 2.091278 TCCTTGATAGACGATGGGGAGT 60.091 50.000 0.00 0.00 0.00 3.85
944 949 2.036475 CCTTGATAGACGATGGGGAGTG 59.964 54.545 0.00 0.00 0.00 3.51
969 974 3.932710 GACGTTTGGATGATGTAGCAGAA 59.067 43.478 0.00 0.00 0.00 3.02
984 989 8.743085 ATGTAGCAGAAAACTGTATCAATGAT 57.257 30.769 0.00 0.00 0.00 2.45
1173 1178 2.425668 TCGACGTCTCTCCATGCAATTA 59.574 45.455 14.70 0.00 0.00 1.40
1198 1203 2.094078 GGCAAAGAGCATAATGGCACAA 60.094 45.455 0.00 0.00 45.66 3.33
1199 1204 3.587923 GCAAAGAGCATAATGGCACAAA 58.412 40.909 0.00 0.00 43.65 2.83
1222 1227 2.724839 CGTGCGATTACAGAAACCAAGC 60.725 50.000 0.00 0.00 0.00 4.01
1271 1375 0.322546 CAAGTTCAGCAGGTACCCCC 60.323 60.000 8.74 0.00 0.00 5.40
1444 1548 0.166814 CGGAAAGCTGCAGCACTTAC 59.833 55.000 38.24 28.43 45.16 2.34
1446 1550 1.608590 GGAAAGCTGCAGCACTTACAA 59.391 47.619 38.24 0.00 45.16 2.41
1478 1590 7.439356 CGATTTGAGAGGCTGTTATTATCTTGA 59.561 37.037 0.00 0.00 0.00 3.02
1707 1834 0.038526 AGCGTCTGTTCTGTAACCCG 60.039 55.000 0.00 0.00 34.49 5.28
2173 2318 1.211457 AGCATCTTCCAGGCCTTGTAG 59.789 52.381 0.00 2.61 0.00 2.74
2215 2360 1.903877 TAACAGAGCAGCTCCAGGCC 61.904 60.000 19.40 0.00 43.05 5.19
2325 2470 7.687941 TCTCATGTTTAAGGATGAAAAGGAC 57.312 36.000 0.00 0.00 0.00 3.85
2362 2507 6.000840 GTCTTGAAGGAAAGAAAGGAGATGT 58.999 40.000 0.00 0.00 37.90 3.06
2368 2514 7.880195 TGAAGGAAAGAAAGGAGATGTAGAAAG 59.120 37.037 0.00 0.00 0.00 2.62
2472 2634 4.282449 TCCCGGTAATTCATATGATCGTGT 59.718 41.667 6.17 0.00 0.00 4.49
2767 2948 1.202818 AGACAAGCCAGGTTCCAGAAC 60.203 52.381 1.77 1.77 40.45 3.01
2859 3044 1.768684 TATTCGCCAGCCTCCCATCC 61.769 60.000 0.00 0.00 0.00 3.51
2864 3049 0.251077 GCCAGCCTCCCATCCTATTG 60.251 60.000 0.00 0.00 0.00 1.90
2882 3067 5.888161 CCTATTGGGTTTGCTTGAGTAGAAT 59.112 40.000 0.00 0.00 0.00 2.40
2884 3069 7.227512 CCTATTGGGTTTGCTTGAGTAGAATAG 59.772 40.741 0.00 0.00 0.00 1.73
2887 3072 4.567159 GGGTTTGCTTGAGTAGAATAGACG 59.433 45.833 0.00 0.00 0.00 4.18
2888 3073 5.169295 GGTTTGCTTGAGTAGAATAGACGT 58.831 41.667 0.00 0.00 0.00 4.34
2890 3075 6.401153 GGTTTGCTTGAGTAGAATAGACGTTG 60.401 42.308 0.00 0.00 0.00 4.10
2895 3080 5.952526 TGAGTAGAATAGACGTTGTGTGA 57.047 39.130 0.00 0.00 0.00 3.58
2980 3167 8.871629 TTGTTTGCCTTATGATTTACTAGGAA 57.128 30.769 0.00 0.00 0.00 3.36
2981 3168 8.871629 TGTTTGCCTTATGATTTACTAGGAAA 57.128 30.769 1.71 1.71 0.00 3.13
2982 3169 9.474313 TGTTTGCCTTATGATTTACTAGGAAAT 57.526 29.630 12.97 12.97 0.00 2.17
2986 3173 9.231297 TGCCTTATGATTTACTAGGAAATATGC 57.769 33.333 13.08 7.00 0.00 3.14
2987 3174 9.231297 GCCTTATGATTTACTAGGAAATATGCA 57.769 33.333 13.08 7.72 0.00 3.96
2992 3179 7.874940 TGATTTACTAGGAAATATGCATGTGC 58.125 34.615 13.08 0.00 42.50 4.57
2993 3180 5.922739 TTACTAGGAAATATGCATGTGCG 57.077 39.130 10.16 0.00 45.83 5.34
2994 3181 3.808728 ACTAGGAAATATGCATGTGCGT 58.191 40.909 10.16 4.95 45.83 5.24
2995 3182 4.199310 ACTAGGAAATATGCATGTGCGTT 58.801 39.130 10.16 0.00 45.83 4.84
2996 3183 3.425577 AGGAAATATGCATGTGCGTTG 57.574 42.857 10.16 0.00 45.83 4.10
2997 3184 1.854126 GGAAATATGCATGTGCGTTGC 59.146 47.619 10.16 0.00 45.83 4.17
3031 3218 8.537728 AAAATAATATCTCAGCATTTCCCACA 57.462 30.769 0.00 0.00 0.00 4.17
3032 3219 8.716674 AAATAATATCTCAGCATTTCCCACAT 57.283 30.769 0.00 0.00 0.00 3.21
3033 3220 7.934855 ATAATATCTCAGCATTTCCCACATC 57.065 36.000 0.00 0.00 0.00 3.06
3034 3221 2.425143 TCTCAGCATTTCCCACATCC 57.575 50.000 0.00 0.00 0.00 3.51
3035 3222 1.064463 TCTCAGCATTTCCCACATCCC 60.064 52.381 0.00 0.00 0.00 3.85
3036 3223 0.033208 TCAGCATTTCCCACATCCCC 60.033 55.000 0.00 0.00 0.00 4.81
3037 3224 1.076777 AGCATTTCCCACATCCCCG 60.077 57.895 0.00 0.00 0.00 5.73
3038 3225 2.785425 GCATTTCCCACATCCCCGC 61.785 63.158 0.00 0.00 0.00 6.13
3039 3226 1.379710 CATTTCCCACATCCCCGCA 60.380 57.895 0.00 0.00 0.00 5.69
3040 3227 1.379843 ATTTCCCACATCCCCGCAC 60.380 57.895 0.00 0.00 0.00 5.34
3041 3228 2.148723 ATTTCCCACATCCCCGCACA 62.149 55.000 0.00 0.00 0.00 4.57
3042 3229 3.561120 TTCCCACATCCCCGCACAC 62.561 63.158 0.00 0.00 0.00 3.82
3043 3230 4.343323 CCCACATCCCCGCACACA 62.343 66.667 0.00 0.00 0.00 3.72
3044 3231 3.055719 CCACATCCCCGCACACAC 61.056 66.667 0.00 0.00 0.00 3.82
3045 3232 2.032528 CACATCCCCGCACACACT 59.967 61.111 0.00 0.00 0.00 3.55
3046 3233 2.034879 CACATCCCCGCACACACTC 61.035 63.158 0.00 0.00 0.00 3.51
3047 3234 2.217038 ACATCCCCGCACACACTCT 61.217 57.895 0.00 0.00 0.00 3.24
3048 3235 1.003355 CATCCCCGCACACACTCTT 60.003 57.895 0.00 0.00 0.00 2.85
3049 3236 0.606401 CATCCCCGCACACACTCTTT 60.606 55.000 0.00 0.00 0.00 2.52
3050 3237 0.321653 ATCCCCGCACACACTCTTTC 60.322 55.000 0.00 0.00 0.00 2.62
3051 3238 1.227823 CCCCGCACACACTCTTTCA 60.228 57.895 0.00 0.00 0.00 2.69
3052 3239 1.507141 CCCCGCACACACTCTTTCAC 61.507 60.000 0.00 0.00 0.00 3.18
3053 3240 1.564622 CCGCACACACTCTTTCACG 59.435 57.895 0.00 0.00 0.00 4.35
3054 3241 1.151777 CCGCACACACTCTTTCACGT 61.152 55.000 0.00 0.00 0.00 4.49
3055 3242 0.229753 CGCACACACTCTTTCACGTC 59.770 55.000 0.00 0.00 0.00 4.34
3056 3243 0.582005 GCACACACTCTTTCACGTCC 59.418 55.000 0.00 0.00 0.00 4.79
3057 3244 1.806623 GCACACACTCTTTCACGTCCT 60.807 52.381 0.00 0.00 0.00 3.85
3058 3245 2.128035 CACACACTCTTTCACGTCCTC 58.872 52.381 0.00 0.00 0.00 3.71
3059 3246 2.032620 ACACACTCTTTCACGTCCTCT 58.967 47.619 0.00 0.00 0.00 3.69
3060 3247 3.004419 CACACACTCTTTCACGTCCTCTA 59.996 47.826 0.00 0.00 0.00 2.43
3061 3248 3.827302 ACACACTCTTTCACGTCCTCTAT 59.173 43.478 0.00 0.00 0.00 1.98
3062 3249 4.169508 CACACTCTTTCACGTCCTCTATG 58.830 47.826 0.00 0.00 0.00 2.23
3063 3250 3.827302 ACACTCTTTCACGTCCTCTATGT 59.173 43.478 0.00 0.00 0.00 2.29
3064 3251 4.169508 CACTCTTTCACGTCCTCTATGTG 58.830 47.826 0.00 0.00 45.08 3.21
3070 3257 3.297830 CACGTCCTCTATGTGAACACA 57.702 47.619 10.04 10.04 46.40 3.72
3071 3258 3.649073 CACGTCCTCTATGTGAACACAA 58.351 45.455 11.60 1.66 46.40 3.33
3072 3259 3.428870 CACGTCCTCTATGTGAACACAAC 59.571 47.826 11.60 3.86 46.40 3.32
3073 3260 3.069016 ACGTCCTCTATGTGAACACAACA 59.931 43.478 11.60 2.68 45.41 3.33
3074 3261 3.428870 CGTCCTCTATGTGAACACAACAC 59.571 47.826 11.60 0.00 45.41 3.32
3075 3262 3.428870 GTCCTCTATGTGAACACAACACG 59.571 47.826 11.60 2.18 45.41 4.49
3076 3263 3.069016 TCCTCTATGTGAACACAACACGT 59.931 43.478 11.60 0.00 45.41 4.49
3091 3278 4.503007 ACAACACGTGATCTATATTGTCGC 59.497 41.667 25.01 0.00 0.00 5.19
3092 3279 4.569761 ACACGTGATCTATATTGTCGCT 57.430 40.909 25.01 0.00 0.00 4.93
3093 3280 4.933330 ACACGTGATCTATATTGTCGCTT 58.067 39.130 25.01 0.00 0.00 4.68
3094 3281 6.068473 ACACGTGATCTATATTGTCGCTTA 57.932 37.500 25.01 0.00 0.00 3.09
3095 3282 6.678878 ACACGTGATCTATATTGTCGCTTAT 58.321 36.000 25.01 0.00 0.00 1.73
3096 3283 7.145985 ACACGTGATCTATATTGTCGCTTATT 58.854 34.615 25.01 0.00 0.00 1.40
3097 3284 7.326305 ACACGTGATCTATATTGTCGCTTATTC 59.674 37.037 25.01 0.00 0.00 1.75
3098 3285 7.539022 CACGTGATCTATATTGTCGCTTATTCT 59.461 37.037 10.90 0.00 0.00 2.40
3099 3286 7.751348 ACGTGATCTATATTGTCGCTTATTCTC 59.249 37.037 0.00 0.00 0.00 2.87
3100 3287 7.219154 CGTGATCTATATTGTCGCTTATTCTCC 59.781 40.741 0.00 0.00 0.00 3.71
3101 3288 8.247562 GTGATCTATATTGTCGCTTATTCTCCT 58.752 37.037 0.00 0.00 0.00 3.69
3102 3289 8.807118 TGATCTATATTGTCGCTTATTCTCCTT 58.193 33.333 0.00 0.00 0.00 3.36
3103 3290 9.296400 GATCTATATTGTCGCTTATTCTCCTTC 57.704 37.037 0.00 0.00 0.00 3.46
3104 3291 7.603651 TCTATATTGTCGCTTATTCTCCTTCC 58.396 38.462 0.00 0.00 0.00 3.46
3105 3292 4.762289 ATTGTCGCTTATTCTCCTTCCT 57.238 40.909 0.00 0.00 0.00 3.36
3106 3293 3.526931 TGTCGCTTATTCTCCTTCCTG 57.473 47.619 0.00 0.00 0.00 3.86
3107 3294 2.205911 GTCGCTTATTCTCCTTCCTGC 58.794 52.381 0.00 0.00 0.00 4.85
3108 3295 1.139058 TCGCTTATTCTCCTTCCTGCC 59.861 52.381 0.00 0.00 0.00 4.85
3109 3296 1.134401 CGCTTATTCTCCTTCCTGCCA 60.134 52.381 0.00 0.00 0.00 4.92
3110 3297 2.486191 CGCTTATTCTCCTTCCTGCCAT 60.486 50.000 0.00 0.00 0.00 4.40
3111 3298 3.145286 GCTTATTCTCCTTCCTGCCATC 58.855 50.000 0.00 0.00 0.00 3.51
3112 3299 3.397482 CTTATTCTCCTTCCTGCCATCG 58.603 50.000 0.00 0.00 0.00 3.84
3113 3300 1.207791 ATTCTCCTTCCTGCCATCGT 58.792 50.000 0.00 0.00 0.00 3.73
3114 3301 0.537188 TTCTCCTTCCTGCCATCGTC 59.463 55.000 0.00 0.00 0.00 4.20
3115 3302 1.227089 CTCCTTCCTGCCATCGTCG 60.227 63.158 0.00 0.00 0.00 5.12
3116 3303 2.202932 CCTTCCTGCCATCGTCGG 60.203 66.667 0.00 0.00 0.00 4.79
3125 3312 2.278596 CATCGTCGGCGGTGGTAG 60.279 66.667 16.41 0.00 44.81 3.18
3126 3313 2.753043 ATCGTCGGCGGTGGTAGT 60.753 61.111 10.62 0.00 38.89 2.73
3127 3314 2.345760 ATCGTCGGCGGTGGTAGTT 61.346 57.895 10.62 0.00 38.89 2.24
3128 3315 2.275547 ATCGTCGGCGGTGGTAGTTC 62.276 60.000 10.62 0.00 38.89 3.01
3129 3316 2.652530 GTCGGCGGTGGTAGTTCA 59.347 61.111 7.21 0.00 0.00 3.18
3130 3317 1.005867 GTCGGCGGTGGTAGTTCAA 60.006 57.895 7.21 0.00 0.00 2.69
3131 3318 1.005867 TCGGCGGTGGTAGTTCAAC 60.006 57.895 7.21 0.00 0.00 3.18
3132 3319 2.030958 CGGCGGTGGTAGTTCAACC 61.031 63.158 0.00 0.00 40.19 3.77
3133 3320 1.373812 GGCGGTGGTAGTTCAACCT 59.626 57.895 0.00 0.00 40.44 3.50
3134 3321 0.250597 GGCGGTGGTAGTTCAACCTT 60.251 55.000 0.00 0.00 40.44 3.50
3135 3322 1.601166 GCGGTGGTAGTTCAACCTTT 58.399 50.000 0.00 0.00 40.44 3.11
3136 3323 1.951602 GCGGTGGTAGTTCAACCTTTT 59.048 47.619 0.00 0.00 40.44 2.27
3137 3324 2.287368 GCGGTGGTAGTTCAACCTTTTG 60.287 50.000 0.00 0.00 40.44 2.44
3138 3325 2.946990 CGGTGGTAGTTCAACCTTTTGT 59.053 45.455 0.00 0.00 40.44 2.83
3139 3326 3.002965 CGGTGGTAGTTCAACCTTTTGTC 59.997 47.826 0.00 0.00 40.44 3.18
3140 3327 3.949113 GGTGGTAGTTCAACCTTTTGTCA 59.051 43.478 0.00 0.00 40.44 3.58
3141 3328 4.036380 GGTGGTAGTTCAACCTTTTGTCAG 59.964 45.833 0.00 0.00 40.44 3.51
3142 3329 4.638865 GTGGTAGTTCAACCTTTTGTCAGT 59.361 41.667 0.00 0.00 40.44 3.41
3143 3330 4.638421 TGGTAGTTCAACCTTTTGTCAGTG 59.362 41.667 0.00 0.00 40.44 3.66
3144 3331 4.036380 GGTAGTTCAACCTTTTGTCAGTGG 59.964 45.833 0.00 0.00 36.53 4.00
3145 3332 3.963129 AGTTCAACCTTTTGTCAGTGGA 58.037 40.909 0.00 0.00 34.02 4.02
3146 3333 4.340617 AGTTCAACCTTTTGTCAGTGGAA 58.659 39.130 0.00 0.00 34.02 3.53
3147 3334 4.399303 AGTTCAACCTTTTGTCAGTGGAAG 59.601 41.667 0.00 0.00 34.02 3.46
3148 3335 3.287222 TCAACCTTTTGTCAGTGGAAGG 58.713 45.455 11.47 11.47 43.35 3.46
3149 3336 3.053991 TCAACCTTTTGTCAGTGGAAGGA 60.054 43.478 16.90 0.00 40.86 3.36
3150 3337 3.884037 ACCTTTTGTCAGTGGAAGGAT 57.116 42.857 16.90 4.73 40.86 3.24
3151 3338 3.490348 ACCTTTTGTCAGTGGAAGGATG 58.510 45.455 16.90 0.00 40.86 3.51
3152 3339 3.117512 ACCTTTTGTCAGTGGAAGGATGT 60.118 43.478 16.90 0.00 40.86 3.06
3153 3340 3.254166 CCTTTTGTCAGTGGAAGGATGTG 59.746 47.826 8.79 0.00 40.86 3.21
3154 3341 2.566833 TTGTCAGTGGAAGGATGTGG 57.433 50.000 0.00 0.00 0.00 4.17
3155 3342 0.692476 TGTCAGTGGAAGGATGTGGG 59.308 55.000 0.00 0.00 0.00 4.61
3156 3343 0.678048 GTCAGTGGAAGGATGTGGGC 60.678 60.000 0.00 0.00 0.00 5.36
3157 3344 1.746615 CAGTGGAAGGATGTGGGCG 60.747 63.158 0.00 0.00 0.00 6.13
3158 3345 2.438434 GTGGAAGGATGTGGGCGG 60.438 66.667 0.00 0.00 0.00 6.13
3159 3346 4.424711 TGGAAGGATGTGGGCGGC 62.425 66.667 0.00 0.00 0.00 6.53
3161 3348 4.467084 GAAGGATGTGGGCGGCGA 62.467 66.667 12.98 0.00 0.00 5.54
3162 3349 4.778143 AAGGATGTGGGCGGCGAC 62.778 66.667 17.33 17.33 0.00 5.19
3174 3361 1.931551 CGGCGACCGTCAATAATGG 59.068 57.895 0.00 0.00 42.73 3.16
3175 3362 1.495584 CGGCGACCGTCAATAATGGG 61.496 60.000 0.00 0.00 42.73 4.00
3176 3363 0.179067 GGCGACCGTCAATAATGGGA 60.179 55.000 0.00 0.00 38.50 4.37
3177 3364 1.217882 GCGACCGTCAATAATGGGAG 58.782 55.000 0.00 0.00 38.50 4.30
3178 3365 1.865865 CGACCGTCAATAATGGGAGG 58.134 55.000 0.00 0.00 38.50 4.30
3179 3366 1.411246 CGACCGTCAATAATGGGAGGA 59.589 52.381 0.00 0.00 38.50 3.71
3180 3367 2.545952 CGACCGTCAATAATGGGAGGAG 60.546 54.545 0.00 0.00 38.50 3.69
3181 3368 2.698797 GACCGTCAATAATGGGAGGAGA 59.301 50.000 0.00 0.00 38.50 3.71
3182 3369 3.318313 ACCGTCAATAATGGGAGGAGAT 58.682 45.455 0.00 0.00 38.50 2.75
3183 3370 4.489737 ACCGTCAATAATGGGAGGAGATA 58.510 43.478 0.00 0.00 38.50 1.98
3184 3371 4.528596 ACCGTCAATAATGGGAGGAGATAG 59.471 45.833 0.00 0.00 38.50 2.08
3185 3372 4.528596 CCGTCAATAATGGGAGGAGATAGT 59.471 45.833 0.00 0.00 0.00 2.12
3186 3373 5.336849 CCGTCAATAATGGGAGGAGATAGTC 60.337 48.000 0.00 0.00 0.00 2.59
3187 3374 5.620205 CGTCAATAATGGGAGGAGATAGTCG 60.620 48.000 0.00 0.00 0.00 4.18
3188 3375 4.772624 TCAATAATGGGAGGAGATAGTCGG 59.227 45.833 0.00 0.00 0.00 4.79
3189 3376 1.343069 AATGGGAGGAGATAGTCGGC 58.657 55.000 0.00 0.00 0.00 5.54
3190 3377 0.188587 ATGGGAGGAGATAGTCGGCA 59.811 55.000 0.00 0.00 0.00 5.69
3191 3378 0.188587 TGGGAGGAGATAGTCGGCAT 59.811 55.000 0.00 0.00 0.00 4.40
3192 3379 1.343069 GGGAGGAGATAGTCGGCATT 58.657 55.000 0.00 0.00 0.00 3.56
3193 3380 2.158370 TGGGAGGAGATAGTCGGCATTA 60.158 50.000 0.00 0.00 0.00 1.90
3194 3381 2.494073 GGGAGGAGATAGTCGGCATTAG 59.506 54.545 0.00 0.00 0.00 1.73
3195 3382 3.422796 GGAGGAGATAGTCGGCATTAGA 58.577 50.000 0.00 0.00 0.00 2.10
3196 3383 3.442273 GGAGGAGATAGTCGGCATTAGAG 59.558 52.174 0.00 0.00 0.00 2.43
3197 3384 2.823154 AGGAGATAGTCGGCATTAGAGC 59.177 50.000 0.00 0.00 0.00 4.09
3198 3385 2.823154 GGAGATAGTCGGCATTAGAGCT 59.177 50.000 0.00 0.00 34.17 4.09
3199 3386 3.119637 GGAGATAGTCGGCATTAGAGCTC 60.120 52.174 5.27 5.27 34.17 4.09
3200 3387 2.486203 AGATAGTCGGCATTAGAGCTCG 59.514 50.000 8.37 0.00 34.17 5.03
3201 3388 0.952280 TAGTCGGCATTAGAGCTCGG 59.048 55.000 8.37 0.62 34.17 4.63
3202 3389 1.951631 GTCGGCATTAGAGCTCGGC 60.952 63.158 8.37 10.80 34.17 5.54
3203 3390 2.663188 CGGCATTAGAGCTCGGCC 60.663 66.667 23.32 23.32 41.20 6.13
3204 3391 2.663188 GGCATTAGAGCTCGGCCG 60.663 66.667 22.12 22.12 34.56 6.13
3205 3392 3.341835 GCATTAGAGCTCGGCCGC 61.342 66.667 23.51 7.56 0.00 6.53
3206 3393 3.032609 CATTAGAGCTCGGCCGCG 61.033 66.667 23.51 17.52 34.40 6.46
3207 3394 3.528370 ATTAGAGCTCGGCCGCGT 61.528 61.111 23.51 6.89 34.40 6.01
3208 3395 3.486252 ATTAGAGCTCGGCCGCGTC 62.486 63.158 23.51 16.51 34.40 5.19
3219 3406 2.505557 CCGCGTCGGTTAGGTGTC 60.506 66.667 4.92 0.00 42.73 3.67
3220 3407 2.256158 CGCGTCGGTTAGGTGTCA 59.744 61.111 0.00 0.00 0.00 3.58
3221 3408 1.153901 CGCGTCGGTTAGGTGTCAT 60.154 57.895 0.00 0.00 0.00 3.06
3222 3409 1.138047 CGCGTCGGTTAGGTGTCATC 61.138 60.000 0.00 0.00 0.00 2.92
3223 3410 1.138047 GCGTCGGTTAGGTGTCATCG 61.138 60.000 0.00 0.00 0.00 3.84
3224 3411 0.524816 CGTCGGTTAGGTGTCATCGG 60.525 60.000 0.00 0.00 0.00 4.18
3225 3412 0.804933 GTCGGTTAGGTGTCATCGGC 60.805 60.000 0.00 0.00 0.00 5.54
3226 3413 0.968901 TCGGTTAGGTGTCATCGGCT 60.969 55.000 0.00 0.00 0.00 5.52
3227 3414 0.742505 CGGTTAGGTGTCATCGGCTA 59.257 55.000 0.00 0.00 0.00 3.93
3228 3415 1.269102 CGGTTAGGTGTCATCGGCTAG 60.269 57.143 0.00 0.00 0.00 3.42
3229 3416 1.538419 GGTTAGGTGTCATCGGCTAGC 60.538 57.143 6.04 6.04 0.00 3.42
3230 3417 0.384309 TTAGGTGTCATCGGCTAGCG 59.616 55.000 9.00 4.38 0.00 4.26
3231 3418 2.071844 TAGGTGTCATCGGCTAGCGC 62.072 60.000 9.00 0.00 0.00 5.92
3247 3434 3.180984 CGCCTCGCTTATAGTCACC 57.819 57.895 0.00 0.00 0.00 4.02
3248 3435 0.669077 CGCCTCGCTTATAGTCACCT 59.331 55.000 0.00 0.00 0.00 4.00
3249 3436 1.335142 CGCCTCGCTTATAGTCACCTC 60.335 57.143 0.00 0.00 0.00 3.85
3250 3437 1.000052 GCCTCGCTTATAGTCACCTCC 60.000 57.143 0.00 0.00 0.00 4.30
3251 3438 2.588620 CCTCGCTTATAGTCACCTCCT 58.411 52.381 0.00 0.00 0.00 3.69
3252 3439 2.554893 CCTCGCTTATAGTCACCTCCTC 59.445 54.545 0.00 0.00 0.00 3.71
3253 3440 2.554893 CTCGCTTATAGTCACCTCCTCC 59.445 54.545 0.00 0.00 0.00 4.30
3254 3441 1.267261 CGCTTATAGTCACCTCCTCCG 59.733 57.143 0.00 0.00 0.00 4.63
3255 3442 2.308690 GCTTATAGTCACCTCCTCCGT 58.691 52.381 0.00 0.00 0.00 4.69
3256 3443 2.293955 GCTTATAGTCACCTCCTCCGTC 59.706 54.545 0.00 0.00 0.00 4.79
3257 3444 3.552875 CTTATAGTCACCTCCTCCGTCA 58.447 50.000 0.00 0.00 0.00 4.35
3258 3445 2.526888 ATAGTCACCTCCTCCGTCAA 57.473 50.000 0.00 0.00 0.00 3.18
3259 3446 1.542492 TAGTCACCTCCTCCGTCAAC 58.458 55.000 0.00 0.00 0.00 3.18
3260 3447 1.186267 AGTCACCTCCTCCGTCAACC 61.186 60.000 0.00 0.00 0.00 3.77
3261 3448 2.261671 CACCTCCTCCGTCAACCG 59.738 66.667 0.00 0.00 0.00 4.44
3262 3449 2.116772 ACCTCCTCCGTCAACCGA 59.883 61.111 0.00 0.00 39.56 4.69
3263 3450 1.532316 ACCTCCTCCGTCAACCGAA 60.532 57.895 0.00 0.00 39.56 4.30
3264 3451 1.080025 CCTCCTCCGTCAACCGAAC 60.080 63.158 0.00 0.00 39.56 3.95
3265 3452 1.533469 CCTCCTCCGTCAACCGAACT 61.533 60.000 0.00 0.00 39.56 3.01
3266 3453 0.388649 CTCCTCCGTCAACCGAACTG 60.389 60.000 0.00 0.00 39.56 3.16
3267 3454 1.111116 TCCTCCGTCAACCGAACTGT 61.111 55.000 0.00 0.00 39.56 3.55
3268 3455 0.249741 CCTCCGTCAACCGAACTGTT 60.250 55.000 0.00 0.00 39.56 3.16
3269 3456 0.859232 CTCCGTCAACCGAACTGTTG 59.141 55.000 0.00 3.39 45.51 3.33
3270 3457 0.176219 TCCGTCAACCGAACTGTTGT 59.824 50.000 0.00 0.00 44.66 3.32
3271 3458 0.580104 CCGTCAACCGAACTGTTGTC 59.420 55.000 0.00 3.62 44.66 3.18
3272 3459 0.228742 CGTCAACCGAACTGTTGTCG 59.771 55.000 0.00 11.82 45.72 4.35
3273 3460 3.029127 CGTCAACCGAACTGTTGTCGG 62.029 57.143 17.02 17.02 46.51 4.79
3276 3463 4.431035 CCGAACTGTTGTCGGTGT 57.569 55.556 11.77 0.00 41.62 4.16
3277 3464 2.685364 CCGAACTGTTGTCGGTGTT 58.315 52.632 11.77 0.00 41.62 3.32
3278 3465 0.303493 CCGAACTGTTGTCGGTGTTG 59.697 55.000 11.77 0.00 41.62 3.33
3279 3466 0.315869 CGAACTGTTGTCGGTGTTGC 60.316 55.000 0.00 0.00 32.95 4.17
3280 3467 0.730265 GAACTGTTGTCGGTGTTGCA 59.270 50.000 0.00 0.00 32.95 4.08
3281 3468 1.131504 GAACTGTTGTCGGTGTTGCAA 59.868 47.619 0.00 0.00 32.95 4.08
3282 3469 1.169577 ACTGTTGTCGGTGTTGCAAA 58.830 45.000 0.00 0.00 0.00 3.68
3283 3470 1.748493 ACTGTTGTCGGTGTTGCAAAT 59.252 42.857 0.00 0.00 0.00 2.32
3284 3471 2.946329 ACTGTTGTCGGTGTTGCAAATA 59.054 40.909 0.00 0.00 0.00 1.40
3285 3472 3.568007 ACTGTTGTCGGTGTTGCAAATAT 59.432 39.130 0.00 0.00 0.00 1.28
3286 3473 4.757657 ACTGTTGTCGGTGTTGCAAATATA 59.242 37.500 0.00 0.00 0.00 0.86
3287 3474 5.239744 ACTGTTGTCGGTGTTGCAAATATAA 59.760 36.000 0.00 0.00 0.00 0.98
3288 3475 6.072175 ACTGTTGTCGGTGTTGCAAATATAAT 60.072 34.615 0.00 0.00 0.00 1.28
3289 3476 6.682746 TGTTGTCGGTGTTGCAAATATAATT 58.317 32.000 0.00 0.00 0.00 1.40
3290 3477 7.148641 TGTTGTCGGTGTTGCAAATATAATTT 58.851 30.769 0.00 0.00 0.00 1.82
3291 3478 7.115520 TGTTGTCGGTGTTGCAAATATAATTTG 59.884 33.333 0.00 7.80 0.00 2.32
3305 3492 9.793252 CAAATATAATTTGCAAGTAAGTCTGCT 57.207 29.630 0.00 0.00 0.00 4.24
3308 3495 7.921786 ATAATTTGCAAGTAAGTCTGCTACA 57.078 32.000 0.00 0.00 0.00 2.74
3309 3496 6.633500 AATTTGCAAGTAAGTCTGCTACAA 57.367 33.333 0.00 0.00 0.00 2.41
3310 3497 6.633500 ATTTGCAAGTAAGTCTGCTACAAA 57.367 33.333 0.00 0.00 32.15 2.83
3311 3498 6.443934 TTTGCAAGTAAGTCTGCTACAAAA 57.556 33.333 0.00 0.00 0.00 2.44
3312 3499 6.443934 TTGCAAGTAAGTCTGCTACAAAAA 57.556 33.333 0.00 0.00 0.00 1.94
3313 3500 6.633500 TGCAAGTAAGTCTGCTACAAAAAT 57.367 33.333 0.00 0.00 0.00 1.82
3314 3501 7.038154 TGCAAGTAAGTCTGCTACAAAAATT 57.962 32.000 0.00 0.00 0.00 1.82
3315 3502 8.160521 TGCAAGTAAGTCTGCTACAAAAATTA 57.839 30.769 0.00 0.00 0.00 1.40
3316 3503 8.792633 TGCAAGTAAGTCTGCTACAAAAATTAT 58.207 29.630 0.00 0.00 0.00 1.28
3326 3513 8.899771 TCTGCTACAAAAATTATAAACCTAGGC 58.100 33.333 9.30 0.00 0.00 3.93
3327 3514 8.582657 TGCTACAAAAATTATAAACCTAGGCA 57.417 30.769 9.30 0.00 0.00 4.75
3328 3515 9.196139 TGCTACAAAAATTATAAACCTAGGCAT 57.804 29.630 9.30 2.35 0.00 4.40
3329 3516 9.463443 GCTACAAAAATTATAAACCTAGGCATG 57.537 33.333 9.30 0.00 0.00 4.06
3343 3530 8.910351 AACCTAGGCATGATTCTAAAATAGTC 57.090 34.615 9.30 0.00 0.00 2.59
3344 3531 8.034313 ACCTAGGCATGATTCTAAAATAGTCA 57.966 34.615 9.30 0.00 0.00 3.41
3345 3532 8.664079 ACCTAGGCATGATTCTAAAATAGTCAT 58.336 33.333 9.30 0.00 0.00 3.06
3364 3551 7.849804 AGTCATATACATTGTTTCTGACCAC 57.150 36.000 16.56 1.01 33.69 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.472361 CAATCTGATCTGGCCATTTAAAAATAG 57.528 33.333 5.51 0.00 0.00 1.73
29 30 8.081517 TCAATCTGATCTGGCCATTTAAAAAT 57.918 30.769 5.51 0.00 0.00 1.82
42 43 3.952323 AGGCATTGGTTCAATCTGATCTG 59.048 43.478 0.00 0.00 31.05 2.90
52 53 7.716799 AAATACAAATAGAGGCATTGGTTCA 57.283 32.000 0.00 0.00 0.00 3.18
151 152 6.127675 TGGCTGTTTAAACGTTTTAGTTCCTT 60.128 34.615 20.19 0.00 32.43 3.36
227 228 9.691362 TTTCTTTTGCATCAATTAAACTACTCC 57.309 29.630 0.00 0.00 0.00 3.85
290 291 6.844097 TGGAAACTAATTTGTATTCCCCAC 57.156 37.500 20.06 6.69 39.01 4.61
294 295 8.770438 TTGCAATGGAAACTAATTTGTATTCC 57.230 30.769 18.02 18.02 39.96 3.01
300 301 7.784790 GCAAATTGCAATGGAAACTAATTTG 57.215 32.000 13.82 11.07 44.26 2.32
316 317 2.733026 GGTGTGATGACTTGCAAATTGC 59.267 45.455 11.58 11.58 45.29 3.56
317 318 4.247267 AGGTGTGATGACTTGCAAATTG 57.753 40.909 0.00 0.00 0.00 2.32
318 319 5.711506 TCATAGGTGTGATGACTTGCAAATT 59.288 36.000 0.00 0.00 0.00 1.82
319 320 5.255687 TCATAGGTGTGATGACTTGCAAAT 58.744 37.500 0.00 0.00 0.00 2.32
320 321 4.650734 TCATAGGTGTGATGACTTGCAAA 58.349 39.130 0.00 0.00 0.00 3.68
539 541 4.322567 GGGAATCAACATCATCTAGAGGC 58.677 47.826 0.00 0.00 0.00 4.70
573 575 6.925718 TCATCTATGCGGAATGTTCTCTTAAG 59.074 38.462 0.00 0.00 0.00 1.85
591 593 5.363562 TCAACAGCACAAGGATCATCTAT 57.636 39.130 0.00 0.00 0.00 1.98
606 608 4.096382 TGAAACTTCTTCCAGTTCAACAGC 59.904 41.667 0.00 0.00 35.87 4.40
766 771 5.261216 TCATCCCTTTTAAGTTCCCATCAC 58.739 41.667 0.00 0.00 0.00 3.06
815 820 5.006386 GTCTTCAAATGGTGTGGAAGATCT 58.994 41.667 6.26 0.00 45.13 2.75
941 946 0.991920 ATCATCCAAACGTCCCCACT 59.008 50.000 0.00 0.00 0.00 4.00
942 947 1.094785 CATCATCCAAACGTCCCCAC 58.905 55.000 0.00 0.00 0.00 4.61
943 948 0.695924 ACATCATCCAAACGTCCCCA 59.304 50.000 0.00 0.00 0.00 4.96
944 949 2.561569 CTACATCATCCAAACGTCCCC 58.438 52.381 0.00 0.00 0.00 4.81
984 989 9.507329 GGCTGGATCATATTTCTATTAACAAGA 57.493 33.333 0.00 0.00 0.00 3.02
1173 1178 2.167075 GCCATTATGCTCTTTGCCACTT 59.833 45.455 0.00 0.00 42.00 3.16
1198 1203 1.802365 GGTTTCTGTAATCGCACGGTT 59.198 47.619 0.00 0.00 0.00 4.44
1199 1204 1.270412 TGGTTTCTGTAATCGCACGGT 60.270 47.619 0.00 0.00 0.00 4.83
1222 1227 3.773860 AGTCAGTGAGCGAAGATGTAG 57.226 47.619 0.00 0.00 0.00 2.74
1472 1584 4.458295 CAGTTGATGGCAGTCTTTCAAGAT 59.542 41.667 0.92 0.00 37.39 2.40
1478 1590 2.233271 CCACAGTTGATGGCAGTCTTT 58.767 47.619 0.00 0.00 0.00 2.52
1511 1623 1.472082 TGACAAATAGGCGCACCAATG 59.528 47.619 10.83 4.85 39.06 2.82
1707 1834 2.335712 GCAAGGGTAGGTGCAGCAC 61.336 63.158 17.97 17.97 40.58 4.40
1777 1913 0.114954 TTTTGAAGGGAGGCCATGCT 59.885 50.000 5.01 0.00 0.00 3.79
2325 2470 1.078848 CAAGACGGCCTCTTCCCAG 60.079 63.158 12.79 1.62 37.08 4.45
2362 2507 6.469410 TCAAGAATTCGCCTAAACCTTTCTA 58.531 36.000 0.00 0.00 0.00 2.10
2368 2514 3.869246 TCGATCAAGAATTCGCCTAAACC 59.131 43.478 0.00 0.00 35.39 3.27
2767 2948 5.710513 TCTGATCCACTCAACAAATTTGG 57.289 39.130 21.74 6.85 32.14 3.28
2859 3044 7.987458 TCTATTCTACTCAAGCAAACCCAATAG 59.013 37.037 0.00 0.00 0.00 1.73
2864 3049 4.567159 CGTCTATTCTACTCAAGCAAACCC 59.433 45.833 0.00 0.00 0.00 4.11
2882 3067 2.164827 ACACACACTCACACAACGTCTA 59.835 45.455 0.00 0.00 0.00 2.59
2884 3069 1.060553 CACACACACTCACACAACGTC 59.939 52.381 0.00 0.00 0.00 4.34
2887 3072 1.804151 ACACACACACACTCACACAAC 59.196 47.619 0.00 0.00 0.00 3.32
2888 3073 2.177394 ACACACACACACTCACACAA 57.823 45.000 0.00 0.00 0.00 3.33
2890 3075 2.997303 TGTTACACACACACACTCACAC 59.003 45.455 0.00 0.00 0.00 3.82
2895 3080 2.438021 AGGGATGTTACACACACACACT 59.562 45.455 0.00 0.00 38.61 3.55
2974 3161 4.530388 CAACGCACATGCATATTTCCTAG 58.470 43.478 0.00 0.00 42.21 3.02
2975 3162 3.243035 GCAACGCACATGCATATTTCCTA 60.243 43.478 0.00 0.00 43.29 2.94
2976 3163 2.480073 GCAACGCACATGCATATTTCCT 60.480 45.455 0.00 0.00 43.29 3.36
2977 3164 1.854126 GCAACGCACATGCATATTTCC 59.146 47.619 0.00 0.00 43.29 3.13
3005 3192 8.980596 TGTGGGAAATGCTGAGATATTATTTTT 58.019 29.630 0.00 0.00 0.00 1.94
3006 3193 8.537728 TGTGGGAAATGCTGAGATATTATTTT 57.462 30.769 0.00 0.00 0.00 1.82
3007 3194 8.716674 ATGTGGGAAATGCTGAGATATTATTT 57.283 30.769 0.00 0.00 0.00 1.40
3008 3195 7.395489 GGATGTGGGAAATGCTGAGATATTATT 59.605 37.037 0.00 0.00 0.00 1.40
3009 3196 6.888632 GGATGTGGGAAATGCTGAGATATTAT 59.111 38.462 0.00 0.00 0.00 1.28
3010 3197 6.240894 GGATGTGGGAAATGCTGAGATATTA 58.759 40.000 0.00 0.00 0.00 0.98
3011 3198 5.075493 GGATGTGGGAAATGCTGAGATATT 58.925 41.667 0.00 0.00 0.00 1.28
3012 3199 4.508047 GGGATGTGGGAAATGCTGAGATAT 60.508 45.833 0.00 0.00 0.00 1.63
3013 3200 3.181440 GGGATGTGGGAAATGCTGAGATA 60.181 47.826 0.00 0.00 0.00 1.98
3014 3201 2.423947 GGGATGTGGGAAATGCTGAGAT 60.424 50.000 0.00 0.00 0.00 2.75
3015 3202 1.064463 GGGATGTGGGAAATGCTGAGA 60.064 52.381 0.00 0.00 0.00 3.27
3016 3203 1.396653 GGGATGTGGGAAATGCTGAG 58.603 55.000 0.00 0.00 0.00 3.35
3017 3204 0.033208 GGGGATGTGGGAAATGCTGA 60.033 55.000 0.00 0.00 0.00 4.26
3018 3205 1.386525 CGGGGATGTGGGAAATGCTG 61.387 60.000 0.00 0.00 0.00 4.41
3019 3206 1.076777 CGGGGATGTGGGAAATGCT 60.077 57.895 0.00 0.00 0.00 3.79
3020 3207 2.785425 GCGGGGATGTGGGAAATGC 61.785 63.158 0.00 0.00 0.00 3.56
3021 3208 1.379710 TGCGGGGATGTGGGAAATG 60.380 57.895 0.00 0.00 0.00 2.32
3022 3209 1.379843 GTGCGGGGATGTGGGAAAT 60.380 57.895 0.00 0.00 0.00 2.17
3023 3210 2.034999 GTGCGGGGATGTGGGAAA 59.965 61.111 0.00 0.00 0.00 3.13
3024 3211 3.253061 TGTGCGGGGATGTGGGAA 61.253 61.111 0.00 0.00 0.00 3.97
3025 3212 4.028490 GTGTGCGGGGATGTGGGA 62.028 66.667 0.00 0.00 0.00 4.37
3026 3213 4.343323 TGTGTGCGGGGATGTGGG 62.343 66.667 0.00 0.00 0.00 4.61
3027 3214 3.055719 GTGTGTGCGGGGATGTGG 61.056 66.667 0.00 0.00 0.00 4.17
3028 3215 2.032528 AGTGTGTGCGGGGATGTG 59.967 61.111 0.00 0.00 0.00 3.21
3029 3216 1.768684 AAGAGTGTGTGCGGGGATGT 61.769 55.000 0.00 0.00 0.00 3.06
3030 3217 0.606401 AAAGAGTGTGTGCGGGGATG 60.606 55.000 0.00 0.00 0.00 3.51
3031 3218 0.321653 GAAAGAGTGTGTGCGGGGAT 60.322 55.000 0.00 0.00 0.00 3.85
3032 3219 1.070786 GAAAGAGTGTGTGCGGGGA 59.929 57.895 0.00 0.00 0.00 4.81
3033 3220 1.227823 TGAAAGAGTGTGTGCGGGG 60.228 57.895 0.00 0.00 0.00 5.73
3034 3221 1.831389 CGTGAAAGAGTGTGTGCGGG 61.831 60.000 0.00 0.00 0.00 6.13
3035 3222 1.151777 ACGTGAAAGAGTGTGTGCGG 61.152 55.000 0.00 0.00 0.00 5.69
3036 3223 0.229753 GACGTGAAAGAGTGTGTGCG 59.770 55.000 0.00 0.00 0.00 5.34
3037 3224 0.582005 GGACGTGAAAGAGTGTGTGC 59.418 55.000 0.00 0.00 0.00 4.57
3038 3225 2.128035 GAGGACGTGAAAGAGTGTGTG 58.872 52.381 0.00 0.00 0.00 3.82
3039 3226 2.032620 AGAGGACGTGAAAGAGTGTGT 58.967 47.619 0.00 0.00 0.00 3.72
3040 3227 2.802787 AGAGGACGTGAAAGAGTGTG 57.197 50.000 0.00 0.00 0.00 3.82
3041 3228 3.827302 ACATAGAGGACGTGAAAGAGTGT 59.173 43.478 0.00 0.00 0.00 3.55
3042 3229 4.082733 TCACATAGAGGACGTGAAAGAGTG 60.083 45.833 0.00 0.00 36.75 3.51
3043 3230 4.079970 TCACATAGAGGACGTGAAAGAGT 58.920 43.478 0.00 0.00 36.75 3.24
3044 3231 4.703645 TCACATAGAGGACGTGAAAGAG 57.296 45.455 0.00 0.00 36.75 2.85
3048 3235 3.319689 TGTGTTCACATAGAGGACGTGAA 59.680 43.478 0.00 0.00 44.95 3.18
3049 3236 2.888414 TGTGTTCACATAGAGGACGTGA 59.112 45.455 0.00 0.00 37.87 4.35
3050 3237 3.297830 TGTGTTCACATAGAGGACGTG 57.702 47.619 0.00 0.00 0.00 4.49
3051 3238 3.069016 TGTTGTGTTCACATAGAGGACGT 59.931 43.478 6.47 0.00 0.00 4.34
3052 3239 3.428870 GTGTTGTGTTCACATAGAGGACG 59.571 47.826 6.47 0.00 36.05 4.79
3053 3240 3.428870 CGTGTTGTGTTCACATAGAGGAC 59.571 47.826 6.47 2.03 35.79 3.85
3054 3241 3.069016 ACGTGTTGTGTTCACATAGAGGA 59.931 43.478 6.47 0.00 35.79 3.71
3055 3242 3.184379 CACGTGTTGTGTTCACATAGAGG 59.816 47.826 7.58 5.38 43.88 3.69
3056 3243 4.374990 CACGTGTTGTGTTCACATAGAG 57.625 45.455 7.58 2.84 43.88 2.43
3068 3255 4.503007 GCGACAATATAGATCACGTGTTGT 59.497 41.667 16.51 15.99 0.00 3.32
3069 3256 4.740205 AGCGACAATATAGATCACGTGTTG 59.260 41.667 16.51 12.84 0.00 3.33
3070 3257 4.933330 AGCGACAATATAGATCACGTGTT 58.067 39.130 16.51 7.23 0.00 3.32
3071 3258 4.569761 AGCGACAATATAGATCACGTGT 57.430 40.909 16.51 2.57 0.00 4.49
3072 3259 7.539022 AGAATAAGCGACAATATAGATCACGTG 59.461 37.037 9.94 9.94 0.00 4.49
3073 3260 7.594714 AGAATAAGCGACAATATAGATCACGT 58.405 34.615 0.00 0.00 0.00 4.49
3074 3261 7.219154 GGAGAATAAGCGACAATATAGATCACG 59.781 40.741 0.00 0.00 0.00 4.35
3075 3262 8.247562 AGGAGAATAAGCGACAATATAGATCAC 58.752 37.037 0.00 0.00 0.00 3.06
3076 3263 8.354711 AGGAGAATAAGCGACAATATAGATCA 57.645 34.615 0.00 0.00 0.00 2.92
3077 3264 9.296400 GAAGGAGAATAAGCGACAATATAGATC 57.704 37.037 0.00 0.00 0.00 2.75
3078 3265 8.254508 GGAAGGAGAATAAGCGACAATATAGAT 58.745 37.037 0.00 0.00 0.00 1.98
3079 3266 7.451877 AGGAAGGAGAATAAGCGACAATATAGA 59.548 37.037 0.00 0.00 0.00 1.98
3080 3267 7.543868 CAGGAAGGAGAATAAGCGACAATATAG 59.456 40.741 0.00 0.00 0.00 1.31
3081 3268 7.378966 CAGGAAGGAGAATAAGCGACAATATA 58.621 38.462 0.00 0.00 0.00 0.86
3082 3269 6.226787 CAGGAAGGAGAATAAGCGACAATAT 58.773 40.000 0.00 0.00 0.00 1.28
3083 3270 5.601662 CAGGAAGGAGAATAAGCGACAATA 58.398 41.667 0.00 0.00 0.00 1.90
3084 3271 4.446371 CAGGAAGGAGAATAAGCGACAAT 58.554 43.478 0.00 0.00 0.00 2.71
3085 3272 3.861840 CAGGAAGGAGAATAAGCGACAA 58.138 45.455 0.00 0.00 0.00 3.18
3086 3273 2.418746 GCAGGAAGGAGAATAAGCGACA 60.419 50.000 0.00 0.00 0.00 4.35
3087 3274 2.205911 GCAGGAAGGAGAATAAGCGAC 58.794 52.381 0.00 0.00 0.00 5.19
3088 3275 1.139058 GGCAGGAAGGAGAATAAGCGA 59.861 52.381 0.00 0.00 0.00 4.93
3089 3276 1.134401 TGGCAGGAAGGAGAATAAGCG 60.134 52.381 0.00 0.00 0.00 4.68
3090 3277 2.717639 TGGCAGGAAGGAGAATAAGC 57.282 50.000 0.00 0.00 0.00 3.09
3091 3278 3.181461 ACGATGGCAGGAAGGAGAATAAG 60.181 47.826 0.00 0.00 0.00 1.73
3092 3279 2.771943 ACGATGGCAGGAAGGAGAATAA 59.228 45.455 0.00 0.00 0.00 1.40
3093 3280 2.365617 GACGATGGCAGGAAGGAGAATA 59.634 50.000 0.00 0.00 0.00 1.75
3094 3281 1.139853 GACGATGGCAGGAAGGAGAAT 59.860 52.381 0.00 0.00 0.00 2.40
3095 3282 0.537188 GACGATGGCAGGAAGGAGAA 59.463 55.000 0.00 0.00 0.00 2.87
3096 3283 1.667154 CGACGATGGCAGGAAGGAGA 61.667 60.000 0.00 0.00 0.00 3.71
3097 3284 1.227089 CGACGATGGCAGGAAGGAG 60.227 63.158 0.00 0.00 0.00 3.69
3098 3285 2.721167 CCGACGATGGCAGGAAGGA 61.721 63.158 0.00 0.00 0.00 3.36
3099 3286 2.202932 CCGACGATGGCAGGAAGG 60.203 66.667 0.00 0.00 0.00 3.46
3108 3295 2.278596 CTACCACCGCCGACGATG 60.279 66.667 0.00 0.00 43.93 3.84
3109 3296 2.275547 GAACTACCACCGCCGACGAT 62.276 60.000 0.00 0.00 43.93 3.73
3110 3297 2.981560 GAACTACCACCGCCGACGA 61.982 63.158 0.00 0.00 43.93 4.20
3111 3298 2.505557 GAACTACCACCGCCGACG 60.506 66.667 0.00 0.00 39.67 5.12
3112 3299 1.005867 TTGAACTACCACCGCCGAC 60.006 57.895 0.00 0.00 0.00 4.79
3113 3300 1.005867 GTTGAACTACCACCGCCGA 60.006 57.895 0.00 0.00 0.00 5.54
3114 3301 2.030958 GGTTGAACTACCACCGCCG 61.031 63.158 0.00 0.00 38.12 6.46
3115 3302 0.250597 AAGGTTGAACTACCACCGCC 60.251 55.000 7.98 0.00 40.82 6.13
3116 3303 1.601166 AAAGGTTGAACTACCACCGC 58.399 50.000 7.98 0.00 40.82 5.68
3117 3304 2.946990 ACAAAAGGTTGAACTACCACCG 59.053 45.455 7.98 0.00 40.82 4.94
3118 3305 3.949113 TGACAAAAGGTTGAACTACCACC 59.051 43.478 7.98 0.00 40.82 4.61
3119 3306 4.638865 ACTGACAAAAGGTTGAACTACCAC 59.361 41.667 7.98 0.00 40.82 4.16
3120 3307 4.638421 CACTGACAAAAGGTTGAACTACCA 59.362 41.667 7.98 0.00 40.82 3.25
3121 3308 4.036380 CCACTGACAAAAGGTTGAACTACC 59.964 45.833 0.00 0.00 38.20 3.18
3122 3309 4.879545 TCCACTGACAAAAGGTTGAACTAC 59.120 41.667 0.00 0.00 38.20 2.73
3123 3310 5.105567 TCCACTGACAAAAGGTTGAACTA 57.894 39.130 0.00 0.00 38.20 2.24
3124 3311 3.963129 TCCACTGACAAAAGGTTGAACT 58.037 40.909 0.00 0.00 38.20 3.01
3125 3312 4.440112 CCTTCCACTGACAAAAGGTTGAAC 60.440 45.833 0.00 0.00 38.20 3.18
3126 3313 3.699038 CCTTCCACTGACAAAAGGTTGAA 59.301 43.478 0.00 0.00 38.20 2.69
3127 3314 3.053991 TCCTTCCACTGACAAAAGGTTGA 60.054 43.478 0.00 0.00 39.45 3.18
3128 3315 3.287222 TCCTTCCACTGACAAAAGGTTG 58.713 45.455 0.00 0.00 39.45 3.77
3129 3316 3.662759 TCCTTCCACTGACAAAAGGTT 57.337 42.857 0.00 0.00 39.45 3.50
3130 3317 3.117512 ACATCCTTCCACTGACAAAAGGT 60.118 43.478 0.00 0.00 39.45 3.50
3131 3318 3.254166 CACATCCTTCCACTGACAAAAGG 59.746 47.826 0.00 0.00 39.73 3.11
3132 3319 3.254166 CCACATCCTTCCACTGACAAAAG 59.746 47.826 0.00 0.00 0.00 2.27
3133 3320 3.221771 CCACATCCTTCCACTGACAAAA 58.778 45.455 0.00 0.00 0.00 2.44
3134 3321 2.488891 CCCACATCCTTCCACTGACAAA 60.489 50.000 0.00 0.00 0.00 2.83
3135 3322 1.073763 CCCACATCCTTCCACTGACAA 59.926 52.381 0.00 0.00 0.00 3.18
3136 3323 0.692476 CCCACATCCTTCCACTGACA 59.308 55.000 0.00 0.00 0.00 3.58
3137 3324 0.678048 GCCCACATCCTTCCACTGAC 60.678 60.000 0.00 0.00 0.00 3.51
3138 3325 1.685224 GCCCACATCCTTCCACTGA 59.315 57.895 0.00 0.00 0.00 3.41
3139 3326 1.746615 CGCCCACATCCTTCCACTG 60.747 63.158 0.00 0.00 0.00 3.66
3140 3327 2.671070 CGCCCACATCCTTCCACT 59.329 61.111 0.00 0.00 0.00 4.00
3141 3328 2.438434 CCGCCCACATCCTTCCAC 60.438 66.667 0.00 0.00 0.00 4.02
3142 3329 4.424711 GCCGCCCACATCCTTCCA 62.425 66.667 0.00 0.00 0.00 3.53
3144 3331 4.467084 TCGCCGCCCACATCCTTC 62.467 66.667 0.00 0.00 0.00 3.46
3145 3332 4.778143 GTCGCCGCCCACATCCTT 62.778 66.667 0.00 0.00 0.00 3.36
3157 3344 0.179067 TCCCATTATTGACGGTCGCC 60.179 55.000 3.34 0.00 0.00 5.54
3158 3345 1.217882 CTCCCATTATTGACGGTCGC 58.782 55.000 3.34 0.00 0.00 5.19
3159 3346 1.411246 TCCTCCCATTATTGACGGTCG 59.589 52.381 3.34 0.00 0.00 4.79
3160 3347 2.698797 TCTCCTCCCATTATTGACGGTC 59.301 50.000 0.00 0.00 0.00 4.79
3161 3348 2.759355 TCTCCTCCCATTATTGACGGT 58.241 47.619 0.00 0.00 0.00 4.83
3162 3349 4.528596 ACTATCTCCTCCCATTATTGACGG 59.471 45.833 0.00 0.00 0.00 4.79
3163 3350 5.620205 CGACTATCTCCTCCCATTATTGACG 60.620 48.000 0.00 0.00 0.00 4.35
3164 3351 5.336849 CCGACTATCTCCTCCCATTATTGAC 60.337 48.000 0.00 0.00 0.00 3.18
3165 3352 4.772624 CCGACTATCTCCTCCCATTATTGA 59.227 45.833 0.00 0.00 0.00 2.57
3166 3353 4.621747 GCCGACTATCTCCTCCCATTATTG 60.622 50.000 0.00 0.00 0.00 1.90
3167 3354 3.515901 GCCGACTATCTCCTCCCATTATT 59.484 47.826 0.00 0.00 0.00 1.40
3168 3355 3.100671 GCCGACTATCTCCTCCCATTAT 58.899 50.000 0.00 0.00 0.00 1.28
3169 3356 2.158370 TGCCGACTATCTCCTCCCATTA 60.158 50.000 0.00 0.00 0.00 1.90
3170 3357 1.343069 GCCGACTATCTCCTCCCATT 58.657 55.000 0.00 0.00 0.00 3.16
3171 3358 0.188587 TGCCGACTATCTCCTCCCAT 59.811 55.000 0.00 0.00 0.00 4.00
3172 3359 0.188587 ATGCCGACTATCTCCTCCCA 59.811 55.000 0.00 0.00 0.00 4.37
3173 3360 1.343069 AATGCCGACTATCTCCTCCC 58.657 55.000 0.00 0.00 0.00 4.30
3174 3361 3.422796 TCTAATGCCGACTATCTCCTCC 58.577 50.000 0.00 0.00 0.00 4.30
3175 3362 3.119637 GCTCTAATGCCGACTATCTCCTC 60.120 52.174 0.00 0.00 0.00 3.71
3176 3363 2.823154 GCTCTAATGCCGACTATCTCCT 59.177 50.000 0.00 0.00 0.00 3.69
3177 3364 2.823154 AGCTCTAATGCCGACTATCTCC 59.177 50.000 0.00 0.00 0.00 3.71
3178 3365 3.425625 CGAGCTCTAATGCCGACTATCTC 60.426 52.174 12.85 0.00 0.00 2.75
3179 3366 2.486203 CGAGCTCTAATGCCGACTATCT 59.514 50.000 12.85 0.00 0.00 1.98
3180 3367 2.414824 CCGAGCTCTAATGCCGACTATC 60.415 54.545 12.85 0.00 0.00 2.08
3181 3368 1.542030 CCGAGCTCTAATGCCGACTAT 59.458 52.381 12.85 0.00 0.00 2.12
3182 3369 0.952280 CCGAGCTCTAATGCCGACTA 59.048 55.000 12.85 0.00 0.00 2.59
3183 3370 1.736586 CCGAGCTCTAATGCCGACT 59.263 57.895 12.85 0.00 0.00 4.18
3184 3371 1.951631 GCCGAGCTCTAATGCCGAC 60.952 63.158 12.85 0.00 0.00 4.79
3185 3372 2.417516 GCCGAGCTCTAATGCCGA 59.582 61.111 12.85 0.00 0.00 5.54
3186 3373 2.663188 GGCCGAGCTCTAATGCCG 60.663 66.667 12.85 0.00 31.55 5.69
3187 3374 2.663188 CGGCCGAGCTCTAATGCC 60.663 66.667 24.07 16.16 38.74 4.40
3188 3375 3.341835 GCGGCCGAGCTCTAATGC 61.342 66.667 33.48 1.90 0.00 3.56
3189 3376 3.032609 CGCGGCCGAGCTCTAATG 61.033 66.667 33.48 1.65 36.29 1.90
3190 3377 3.486252 GACGCGGCCGAGCTCTAAT 62.486 63.158 33.48 8.56 38.29 1.73
3191 3378 4.189188 GACGCGGCCGAGCTCTAA 62.189 66.667 33.48 0.00 38.29 2.10
3203 3390 1.138047 GATGACACCTAACCGACGCG 61.138 60.000 3.53 3.53 0.00 6.01
3204 3391 1.138047 CGATGACACCTAACCGACGC 61.138 60.000 0.00 0.00 0.00 5.19
3205 3392 0.524816 CCGATGACACCTAACCGACG 60.525 60.000 0.00 0.00 0.00 5.12
3206 3393 0.804933 GCCGATGACACCTAACCGAC 60.805 60.000 0.00 0.00 0.00 4.79
3207 3394 0.968901 AGCCGATGACACCTAACCGA 60.969 55.000 0.00 0.00 0.00 4.69
3208 3395 0.742505 TAGCCGATGACACCTAACCG 59.257 55.000 0.00 0.00 0.00 4.44
3209 3396 1.538419 GCTAGCCGATGACACCTAACC 60.538 57.143 2.29 0.00 0.00 2.85
3210 3397 1.854227 GCTAGCCGATGACACCTAAC 58.146 55.000 2.29 0.00 0.00 2.34
3211 3398 0.384309 CGCTAGCCGATGACACCTAA 59.616 55.000 9.66 0.00 40.02 2.69
3212 3399 2.030551 CGCTAGCCGATGACACCTA 58.969 57.895 9.66 0.00 40.02 3.08
3213 3400 2.808315 CGCTAGCCGATGACACCT 59.192 61.111 9.66 0.00 40.02 4.00
3214 3401 2.962253 GCGCTAGCCGATGACACC 60.962 66.667 9.66 0.00 40.02 4.16
3229 3416 0.669077 AGGTGACTATAAGCGAGGCG 59.331 55.000 0.00 0.00 40.61 5.52
3230 3417 1.000052 GGAGGTGACTATAAGCGAGGC 60.000 57.143 0.00 0.00 44.43 4.70
3231 3418 2.554893 GAGGAGGTGACTATAAGCGAGG 59.445 54.545 0.00 0.00 44.43 4.63
3232 3419 2.554893 GGAGGAGGTGACTATAAGCGAG 59.445 54.545 0.00 0.00 44.43 5.03
3233 3420 2.584236 GGAGGAGGTGACTATAAGCGA 58.416 52.381 0.00 0.00 44.43 4.93
3234 3421 1.267261 CGGAGGAGGTGACTATAAGCG 59.733 57.143 0.00 0.00 44.43 4.68
3235 3422 2.293955 GACGGAGGAGGTGACTATAAGC 59.706 54.545 0.00 0.00 44.43 3.09
3236 3423 3.552875 TGACGGAGGAGGTGACTATAAG 58.447 50.000 0.00 0.00 44.43 1.73
3237 3424 3.657398 TGACGGAGGAGGTGACTATAA 57.343 47.619 0.00 0.00 44.43 0.98
3238 3425 3.285484 GTTGACGGAGGAGGTGACTATA 58.715 50.000 0.00 0.00 44.43 1.31
3239 3426 2.100989 GTTGACGGAGGAGGTGACTAT 58.899 52.381 0.00 0.00 44.43 2.12
3240 3427 1.542492 GTTGACGGAGGAGGTGACTA 58.458 55.000 0.00 0.00 44.43 2.59
3242 3429 1.292541 GGTTGACGGAGGAGGTGAC 59.707 63.158 0.00 0.00 0.00 3.67
3243 3430 2.273179 CGGTTGACGGAGGAGGTGA 61.273 63.158 0.00 0.00 39.42 4.02
3244 3431 1.812686 TTCGGTTGACGGAGGAGGTG 61.813 60.000 0.00 0.00 44.45 4.00
3245 3432 1.532316 TTCGGTTGACGGAGGAGGT 60.532 57.895 0.00 0.00 44.45 3.85
3246 3433 1.080025 GTTCGGTTGACGGAGGAGG 60.080 63.158 0.00 0.00 44.45 4.30
3247 3434 0.388649 CAGTTCGGTTGACGGAGGAG 60.389 60.000 0.00 0.00 44.45 3.69
3248 3435 1.111116 ACAGTTCGGTTGACGGAGGA 61.111 55.000 0.00 0.00 44.45 3.71
3249 3436 0.249741 AACAGTTCGGTTGACGGAGG 60.250 55.000 0.00 0.00 44.45 4.30
3250 3437 3.284197 AACAGTTCGGTTGACGGAG 57.716 52.632 0.00 0.00 44.45 4.63
3260 3447 0.315869 GCAACACCGACAACAGTTCG 60.316 55.000 0.00 0.00 0.00 3.95
3261 3448 0.730265 TGCAACACCGACAACAGTTC 59.270 50.000 0.00 0.00 0.00 3.01
3262 3449 1.169577 TTGCAACACCGACAACAGTT 58.830 45.000 0.00 0.00 0.00 3.16
3263 3450 1.169577 TTTGCAACACCGACAACAGT 58.830 45.000 0.00 0.00 0.00 3.55
3264 3451 2.490328 ATTTGCAACACCGACAACAG 57.510 45.000 0.00 0.00 0.00 3.16
3265 3452 5.690997 TTATATTTGCAACACCGACAACA 57.309 34.783 0.00 0.00 0.00 3.33
3266 3453 7.444245 CAAATTATATTTGCAACACCGACAAC 58.556 34.615 0.00 0.00 0.00 3.32
3267 3454 7.573916 CAAATTATATTTGCAACACCGACAA 57.426 32.000 0.00 0.00 0.00 3.18
3279 3466 9.793252 AGCAGACTTACTTGCAAATTATATTTG 57.207 29.630 0.00 7.58 0.00 2.32
3282 3469 9.613428 TGTAGCAGACTTACTTGCAAATTATAT 57.387 29.630 0.00 0.00 0.00 0.86
3283 3470 9.443323 TTGTAGCAGACTTACTTGCAAATTATA 57.557 29.630 0.00 0.00 0.00 0.98
3284 3471 7.921786 TGTAGCAGACTTACTTGCAAATTAT 57.078 32.000 0.00 0.00 0.00 1.28
3285 3472 7.737972 TTGTAGCAGACTTACTTGCAAATTA 57.262 32.000 0.00 0.00 0.00 1.40
3286 3473 6.633500 TTGTAGCAGACTTACTTGCAAATT 57.367 33.333 0.00 0.00 0.00 1.82
3287 3474 6.633500 TTTGTAGCAGACTTACTTGCAAAT 57.367 33.333 0.00 0.00 0.00 2.32
3288 3475 6.443934 TTTTGTAGCAGACTTACTTGCAAA 57.556 33.333 0.00 0.00 0.00 3.68
3289 3476 6.443934 TTTTTGTAGCAGACTTACTTGCAA 57.556 33.333 0.00 0.00 0.00 4.08
3290 3477 6.633500 ATTTTTGTAGCAGACTTACTTGCA 57.367 33.333 0.00 0.00 0.00 4.08
3300 3487 8.899771 GCCTAGGTTTATAATTTTTGTAGCAGA 58.100 33.333 11.31 0.00 0.00 4.26
3301 3488 8.682710 TGCCTAGGTTTATAATTTTTGTAGCAG 58.317 33.333 11.31 0.00 0.00 4.24
3302 3489 8.582657 TGCCTAGGTTTATAATTTTTGTAGCA 57.417 30.769 11.31 0.00 0.00 3.49
3303 3490 9.463443 CATGCCTAGGTTTATAATTTTTGTAGC 57.537 33.333 11.31 0.00 0.00 3.58
3317 3504 9.343539 GACTATTTTAGAATCATGCCTAGGTTT 57.656 33.333 11.31 0.00 0.00 3.27
3318 3505 8.494433 TGACTATTTTAGAATCATGCCTAGGTT 58.506 33.333 11.31 0.00 0.00 3.50
3319 3506 8.034313 TGACTATTTTAGAATCATGCCTAGGT 57.966 34.615 11.31 0.00 0.00 3.08
3338 3525 9.547753 GTGGTCAGAAACAATGTATATGACTAT 57.452 33.333 17.97 0.00 36.64 2.12
3339 3526 8.942338 GTGGTCAGAAACAATGTATATGACTA 57.058 34.615 17.97 12.69 36.64 2.59
3340 3527 7.849804 GTGGTCAGAAACAATGTATATGACT 57.150 36.000 17.97 0.00 36.64 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.