Multiple sequence alignment - TraesCS1D01G415000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G415000 chr1D 100.000 2793 0 0 1 2793 474511585 474508793 0.000000e+00 5158.0
1 TraesCS1D01G415000 chr1A 87.392 1975 124 36 1 1911 569140628 569138715 0.000000e+00 2152.0
2 TraesCS1D01G415000 chr1A 88.131 733 58 15 2084 2793 569138447 569137721 0.000000e+00 845.0
3 TraesCS1D01G415000 chr1A 86.723 354 23 6 2084 2414 569135893 569135541 3.400000e-99 372.0
4 TraesCS1D01G415000 chr1A 88.387 310 33 3 2484 2793 569135206 569134900 1.220000e-98 370.0
5 TraesCS1D01G415000 chr1A 93.220 177 12 0 1909 2085 569136111 569135935 7.670000e-66 261.0
6 TraesCS1D01G415000 chr1A 91.892 185 14 1 1901 2085 569138666 569138483 9.930000e-65 257.0
7 TraesCS1D01G415000 chr1A 75.676 222 47 7 1243 1461 551592914 551592697 1.370000e-18 104.0
8 TraesCS1D01G415000 chr1B 91.206 1410 54 27 527 1915 659781058 659779698 0.000000e+00 1853.0
9 TraesCS1D01G415000 chr1B 84.375 480 50 17 2254 2719 659779404 659778936 5.490000e-122 448.0
10 TraesCS1D01G415000 chr1B 89.270 233 18 4 1901 2127 659779654 659779423 4.550000e-73 285.0
11 TraesCS1D01G415000 chr1B 86.935 199 23 3 320 518 659781719 659781524 1.300000e-53 220.0
12 TraesCS1D01G415000 chr1B 74.130 460 104 13 1 448 666553522 666553066 2.860000e-40 176.0
13 TraesCS1D01G415000 chr1B 75.893 224 47 7 1241 1461 631967503 631967284 1.060000e-19 108.0
14 TraesCS1D01G415000 chr2D 86.567 201 25 2 1242 1441 48133240 48133439 1.300000e-53 220.0
15 TraesCS1D01G415000 chr2D 77.778 162 35 1 90 251 174248390 174248230 6.370000e-17 99.0
16 TraesCS1D01G415000 chr2B 86.567 201 25 2 1242 1441 75847557 75847756 1.300000e-53 220.0
17 TraesCS1D01G415000 chr2A 86.364 198 25 2 1245 1441 51008495 51008299 6.060000e-52 215.0
18 TraesCS1D01G415000 chr2A 79.167 144 25 5 94 235 173840342 173840202 8.240000e-16 95.3
19 TraesCS1D01G415000 chr3D 83.333 222 36 1 1243 1463 305322410 305322631 1.310000e-48 204.0
20 TraesCS1D01G415000 chr3B 82.301 226 37 3 1243 1466 416514099 416513875 2.840000e-45 193.0
21 TraesCS1D01G415000 chr4A 74.082 463 91 22 1 446 80178638 80179088 2.230000e-36 163.0
22 TraesCS1D01G415000 chr5A 84.615 91 14 0 1368 1458 414934431 414934341 1.070000e-14 91.6
23 TraesCS1D01G415000 chr5B 75.956 183 34 8 1260 1437 369485745 369485922 4.960000e-13 86.1
24 TraesCS1D01G415000 chrUn 92.857 42 3 0 180 221 82617504 82617463 8.350000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G415000 chr1D 474508793 474511585 2792 True 5158.0 5158 100.000000 1 2793 1 chr1D.!!$R1 2792
1 TraesCS1D01G415000 chr1A 569134900 569140628 5728 True 709.5 2152 89.290833 1 2793 6 chr1A.!!$R2 2792
2 TraesCS1D01G415000 chr1B 659778936 659781719 2783 True 701.5 1853 87.946500 320 2719 4 chr1B.!!$R3 2399

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
128 129 0.096976 CGTAGAACCGGCTTGCAATG 59.903 55.0 0.0 0.0 0.0 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1839 2377 2.736721 CCAACTCACTAACACACCGATG 59.263 50.0 0.0 0.0 0.0 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.142951 CAAACACCCTCGTCATACCAAA 58.857 45.455 0.00 0.00 0.00 3.28
27 28 2.467566 ACACCCTCGTCATACCAAAC 57.532 50.000 0.00 0.00 0.00 2.93
29 30 3.167485 ACACCCTCGTCATACCAAACTA 58.833 45.455 0.00 0.00 0.00 2.24
50 51 1.254954 GGAGACCGTGGTAGTCACTT 58.745 55.000 0.00 0.00 43.94 3.16
62 63 3.515901 GGTAGTCACTTGTCCCTTGAGAT 59.484 47.826 0.00 0.00 0.00 2.75
79 80 9.171877 CCCTTGAGATAAGATCTATAAATTGCC 57.828 37.037 0.00 0.00 40.38 4.52
96 97 1.865788 GCCGAAGCAGCATTGGTTGA 61.866 55.000 5.78 0.00 44.54 3.18
104 105 2.610976 GCAGCATTGGTTGAAGCATCAA 60.611 45.455 0.00 0.00 43.18 2.57
111 112 3.412722 TTGAAGCATCAACCCACGT 57.587 47.368 0.00 0.00 40.59 4.49
128 129 0.096976 CGTAGAACCGGCTTGCAATG 59.903 55.000 0.00 0.00 0.00 2.82
136 137 1.517694 GGCTTGCAATGCATCACCG 60.518 57.895 9.39 0.00 38.76 4.94
137 138 2.162754 GCTTGCAATGCATCACCGC 61.163 57.895 9.39 3.57 38.76 5.68
139 140 3.339539 TTGCAATGCATCACCGCCG 62.340 57.895 9.39 0.00 38.76 6.46
142 143 2.361104 AATGCATCACCGCCGGTT 60.361 55.556 5.76 0.00 31.02 4.44
143 144 2.406616 AATGCATCACCGCCGGTTC 61.407 57.895 5.76 0.00 31.02 3.62
164 165 1.280421 AGATGGTTGGAGAAGTCAGGC 59.720 52.381 0.00 0.00 0.00 4.85
165 166 0.329596 ATGGTTGGAGAAGTCAGGCC 59.670 55.000 0.00 0.00 0.00 5.19
185 186 3.305897 GCCAAGCCGTAAAAATAACATGC 59.694 43.478 0.00 0.00 0.00 4.06
186 187 3.862845 CCAAGCCGTAAAAATAACATGCC 59.137 43.478 0.00 0.00 0.00 4.40
188 189 4.792521 AGCCGTAAAAATAACATGCCAA 57.207 36.364 0.00 0.00 0.00 4.52
196 197 8.372521 CGTAAAAATAACATGCCAAAAGATGTC 58.627 33.333 0.00 0.00 31.43 3.06
220 221 0.322456 TCACCACACCAATAGCCAGC 60.322 55.000 0.00 0.00 0.00 4.85
245 246 0.888619 GCTCCCCTTAAAAGGCACAC 59.111 55.000 3.03 0.00 45.10 3.82
249 250 1.268625 CCCCTTAAAAGGCACACGAAC 59.731 52.381 3.03 0.00 45.10 3.95
251 252 2.031157 CCCTTAAAAGGCACACGAACTG 60.031 50.000 3.03 0.00 45.10 3.16
252 253 2.031157 CCTTAAAAGGCACACGAACTGG 60.031 50.000 0.00 0.00 39.76 4.00
263 264 3.623060 CACACGAACTGGGGAATCAATAG 59.377 47.826 0.00 0.00 0.00 1.73
265 266 3.871594 CACGAACTGGGGAATCAATAGAC 59.128 47.826 0.00 0.00 0.00 2.59
267 268 3.744530 CGAACTGGGGAATCAATAGACCC 60.745 52.174 0.00 0.00 41.84 4.46
299 300 1.078426 CACCAACGGATCCAGGGAC 60.078 63.158 17.67 0.00 0.00 4.46
311 312 4.530875 GATCCAGGGACACAAATTCTCAT 58.469 43.478 0.00 0.00 0.00 2.90
313 314 5.512942 TCCAGGGACACAAATTCTCATAA 57.487 39.130 0.00 0.00 0.00 1.90
318 341 4.142381 GGGACACAAATTCTCATAAGCCAC 60.142 45.833 0.00 0.00 0.00 5.01
365 388 4.839121 AGACCTTATTTCAACACGCCATA 58.161 39.130 0.00 0.00 0.00 2.74
367 390 4.839121 ACCTTATTTCAACACGCCATAGA 58.161 39.130 0.00 0.00 0.00 1.98
402 425 6.494893 TCAATATCGTGGGAGAAACAAAAG 57.505 37.500 0.00 0.00 0.00 2.27
416 439 9.929180 GGAGAAACAAAAGCCTAAGAAAAATAT 57.071 29.630 0.00 0.00 0.00 1.28
448 472 1.685224 GGTCCCCACTCATCTTGCA 59.315 57.895 0.00 0.00 0.00 4.08
466 490 4.772231 CCGGACGGGGAAGAGGGA 62.772 72.222 0.00 0.00 0.00 4.20
467 491 3.148279 CGGACGGGGAAGAGGGAG 61.148 72.222 0.00 0.00 0.00 4.30
495 526 4.547367 GCGGCGGCTAGGGTTGAT 62.547 66.667 9.78 0.00 35.83 2.57
568 1055 4.268884 CGAGCAAGACTGGTTAGCTATTTC 59.731 45.833 0.00 0.00 35.36 2.17
616 1114 3.340034 TGATCGCCCTAACAAAACGATT 58.660 40.909 0.00 0.00 42.98 3.34
763 1269 1.399791 GAGAAGAAGAAGCGGGCATTG 59.600 52.381 0.00 0.00 0.00 2.82
764 1270 0.179153 GAAGAAGAAGCGGGCATTGC 60.179 55.000 0.00 0.00 0.00 3.56
1164 1675 6.424176 ACGTACCATATCGATCATCAGTAG 57.576 41.667 0.00 0.00 0.00 2.57
1165 1676 5.938710 ACGTACCATATCGATCATCAGTAGT 59.061 40.000 0.00 0.00 0.00 2.73
1166 1677 7.101700 ACGTACCATATCGATCATCAGTAGTA 58.898 38.462 0.00 0.00 0.00 1.82
1167 1678 7.064371 ACGTACCATATCGATCATCAGTAGTAC 59.936 40.741 0.00 3.67 0.00 2.73
1168 1679 7.278203 CGTACCATATCGATCATCAGTAGTACT 59.722 40.741 0.00 0.00 0.00 2.73
1169 1680 9.597170 GTACCATATCGATCATCAGTAGTACTA 57.403 37.037 0.00 0.00 0.00 1.82
1182 1693 4.156190 CAGTAGTACTATATCCCAGCCGTG 59.844 50.000 5.75 0.00 0.00 4.94
1183 1694 3.240310 AGTACTATATCCCAGCCGTGT 57.760 47.619 0.00 0.00 0.00 4.49
1184 1695 4.377762 AGTACTATATCCCAGCCGTGTA 57.622 45.455 0.00 0.00 0.00 2.90
1185 1696 4.931914 AGTACTATATCCCAGCCGTGTAT 58.068 43.478 0.00 0.00 0.00 2.29
1186 1697 4.705507 AGTACTATATCCCAGCCGTGTATG 59.294 45.833 0.00 0.00 0.00 2.39
1206 1717 1.153726 CATGGCGGTGCACGTAGTA 60.154 57.895 11.45 0.00 41.61 1.82
1207 1718 1.153706 ATGGCGGTGCACGTAGTAC 60.154 57.895 11.45 3.60 41.61 2.73
1233 1747 8.328146 CGTAGTATGTGTGAGAACAAATTATGG 58.672 37.037 0.00 0.00 32.81 2.74
1351 1877 1.153289 GCACCTGCTCATCGTGGAT 60.153 57.895 0.00 0.00 38.21 3.41
1354 1880 0.749649 ACCTGCTCATCGTGGATCTC 59.250 55.000 0.00 0.00 0.00 2.75
1389 1915 1.477685 AACCGGTGGTCCAAGATCGT 61.478 55.000 8.52 0.00 33.12 3.73
1460 1986 1.936547 CCAAGATACAGAAGAAGCGCC 59.063 52.381 2.29 0.00 0.00 6.53
1554 2080 2.281070 CAGCAGCAACTCCGTGGT 60.281 61.111 0.00 0.00 0.00 4.16
1656 2182 2.583441 CCGTGCAAGGAGGAGGTGA 61.583 63.158 14.14 0.00 0.00 4.02
1765 2291 1.966451 GGAGTTCTGGCCAACGGTG 60.966 63.158 7.01 0.00 0.00 4.94
1766 2292 2.594592 AGTTCTGGCCAACGGTGC 60.595 61.111 7.01 0.00 0.00 5.01
1839 2377 1.067071 GCCGCCTGTATAGGTATCCAC 60.067 57.143 7.43 0.00 46.41 4.02
2031 2628 6.541111 AGATTAAGTGTTGAAGGTCGAAAC 57.459 37.500 0.00 0.00 0.00 2.78
2064 2661 2.679837 CAAGCACATTAGAGCCGTCAAT 59.320 45.455 0.00 0.00 31.08 2.57
2068 2665 2.679837 CACATTAGAGCCGTCAATGCTT 59.320 45.455 0.00 0.00 39.69 3.91
2121 2756 6.832520 TTTTTCCTGCATTGCTCTGTATTA 57.167 33.333 10.49 0.00 0.00 0.98
2165 2801 5.622770 AATTACTTTTGGTTGGAGCTACG 57.377 39.130 0.00 0.00 0.00 3.51
2176 2812 6.646267 TGGTTGGAGCTACGATTTAGTAAAT 58.354 36.000 7.87 7.87 0.00 1.40
2182 2818 7.820386 TGGAGCTACGATTTAGTAAATGAACAA 59.180 33.333 12.86 0.00 0.00 2.83
2189 2825 9.659830 ACGATTTAGTAAATGAACAAGTTTCAC 57.340 29.630 12.86 0.00 0.00 3.18
2288 2944 6.680810 TCAGTTTGAAATGCATTCCACTTAG 58.319 36.000 13.38 1.92 37.22 2.18
2356 3013 7.453752 ACCTAGTCTTGTCAGTAATACTCCAAA 59.546 37.037 0.00 0.00 0.00 3.28
2521 3179 8.702163 ATTAAAAAGTTGTGAAGTCTTTGTGG 57.298 30.769 0.00 0.00 32.74 4.17
2555 3213 7.414436 TGAAATATGACTAAAATAAGCGTGGC 58.586 34.615 0.00 0.00 0.00 5.01
2563 3221 8.770828 TGACTAAAATAAGCGTGGCTATTTATC 58.229 33.333 0.00 0.73 38.25 1.75
2574 3232 7.445402 AGCGTGGCTATTTATCAATATGTTCTT 59.555 33.333 0.00 0.00 36.99 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 4.142004 ACGGTCTCCATAGTTTGGTATGAC 60.142 45.833 0.00 6.96 46.52 3.06
26 27 2.025605 TGACTACCACGGTCTCCATAGT 60.026 50.000 0.00 0.00 35.04 2.12
27 28 2.358267 GTGACTACCACGGTCTCCATAG 59.642 54.545 0.00 0.00 35.86 2.23
29 30 1.183549 GTGACTACCACGGTCTCCAT 58.816 55.000 0.00 0.00 35.86 3.41
39 40 2.632996 CTCAAGGGACAAGTGACTACCA 59.367 50.000 5.93 0.00 0.00 3.25
79 80 1.973138 CTTCAACCAATGCTGCTTCG 58.027 50.000 0.00 0.00 0.00 3.79
96 97 2.423577 GTTCTACGTGGGTTGATGCTT 58.576 47.619 0.00 0.00 0.00 3.91
104 105 2.212110 AAGCCGGTTCTACGTGGGT 61.212 57.895 1.90 0.00 0.00 4.51
111 112 0.607762 TGCATTGCAAGCCGGTTCTA 60.608 50.000 9.33 0.00 34.76 2.10
128 129 3.499737 CTGAACCGGCGGTGATGC 61.500 66.667 34.87 21.71 35.34 3.91
136 137 1.002624 TCCAACCATCTGAACCGGC 60.003 57.895 0.00 0.00 0.00 6.13
137 138 0.613260 TCTCCAACCATCTGAACCGG 59.387 55.000 0.00 0.00 0.00 5.28
139 140 3.244561 TGACTTCTCCAACCATCTGAACC 60.245 47.826 0.00 0.00 0.00 3.62
142 143 2.568956 CCTGACTTCTCCAACCATCTGA 59.431 50.000 0.00 0.00 0.00 3.27
143 144 2.938756 GCCTGACTTCTCCAACCATCTG 60.939 54.545 0.00 0.00 0.00 2.90
164 165 3.862845 GGCATGTTATTTTTACGGCTTGG 59.137 43.478 0.00 0.00 0.00 3.61
165 166 4.489810 TGGCATGTTATTTTTACGGCTTG 58.510 39.130 0.00 0.00 0.00 4.01
172 173 8.300286 TCGACATCTTTTGGCATGTTATTTTTA 58.700 29.630 0.00 0.00 33.22 1.52
174 175 6.686630 TCGACATCTTTTGGCATGTTATTTT 58.313 32.000 0.00 0.00 33.22 1.82
185 186 3.058914 GTGGTGACTTCGACATCTTTTGG 60.059 47.826 0.00 0.00 0.00 3.28
186 187 3.559655 TGTGGTGACTTCGACATCTTTTG 59.440 43.478 0.00 0.00 0.00 2.44
188 189 3.131396 GTGTGGTGACTTCGACATCTTT 58.869 45.455 0.00 0.00 0.00 2.52
196 197 1.732259 GCTATTGGTGTGGTGACTTCG 59.268 52.381 0.00 0.00 0.00 3.79
220 221 2.959030 GCCTTTTAAGGGGAGCTATTGG 59.041 50.000 10.39 0.00 46.56 3.16
230 231 2.031157 CAGTTCGTGTGCCTTTTAAGGG 60.031 50.000 10.39 0.00 46.56 3.95
235 236 1.106944 CCCCAGTTCGTGTGCCTTTT 61.107 55.000 0.00 0.00 0.00 2.27
245 246 3.467803 GGTCTATTGATTCCCCAGTTCG 58.532 50.000 0.00 0.00 0.00 3.95
249 250 4.526438 AAAGGGTCTATTGATTCCCCAG 57.474 45.455 4.55 0.00 40.70 4.45
276 277 4.815108 GGATCCGTTGGTGCCCCC 62.815 72.222 0.00 0.00 0.00 5.40
281 282 1.078426 GTCCCTGGATCCGTTGGTG 60.078 63.158 7.39 4.26 0.00 4.17
288 289 3.282885 GAGAATTTGTGTCCCTGGATCC 58.717 50.000 4.20 4.20 0.00 3.36
294 295 4.263905 TGGCTTATGAGAATTTGTGTCCCT 60.264 41.667 0.00 0.00 0.00 4.20
299 300 5.585390 GATGGTGGCTTATGAGAATTTGTG 58.415 41.667 0.00 0.00 0.00 3.33
318 341 1.611519 GTCTCTCCCTACCTCGATGG 58.388 60.000 0.00 0.00 42.93 3.51
365 388 3.070159 CGATATTGATGAGGTGGTGGTCT 59.930 47.826 0.00 0.00 0.00 3.85
367 390 2.771943 ACGATATTGATGAGGTGGTGGT 59.228 45.455 0.00 0.00 0.00 4.16
402 425 6.698766 TCCGTCTCGTTATATTTTTCTTAGGC 59.301 38.462 0.00 0.00 0.00 3.93
416 439 2.040544 GGACCCGTCCGTCTCGTTA 61.041 63.158 0.00 0.00 40.36 3.18
441 465 4.096003 CCCCGTCCGGTGCAAGAT 62.096 66.667 0.00 0.00 0.00 2.40
495 526 6.184789 GGGTGGTTAATCATCACTTTTCCTA 58.815 40.000 0.52 0.00 0.00 2.94
568 1055 9.831737 TTTTATTGTTGTTGATTGTTGGTTTTG 57.168 25.926 0.00 0.00 0.00 2.44
595 1082 2.459060 TCGTTTTGTTAGGGCGATCA 57.541 45.000 0.00 0.00 0.00 2.92
616 1114 7.012515 TGCACTTTGGTTTTCGATTAAGAGTTA 59.987 33.333 0.00 0.00 0.00 2.24
693 1196 0.527565 ACGTGCGTATTAACTCCCGT 59.472 50.000 0.00 0.00 0.00 5.28
763 1269 1.081175 GCTTTCCTTCGCAACTGGC 60.081 57.895 0.00 0.00 39.90 4.85
764 1270 1.207593 CGCTTTCCTTCGCAACTGG 59.792 57.895 0.00 0.00 0.00 4.00
841 1347 1.814169 CTAACTCGGAAAGGCGCCC 60.814 63.158 26.15 7.93 0.00 6.13
926 1433 2.732094 GTCGCCAGCGTAACACGT 60.732 61.111 12.32 0.00 44.73 4.49
987 1495 2.692368 TGCATGGTCCTCCCCTCC 60.692 66.667 0.00 0.00 0.00 4.30
988 1496 1.997874 ACTGCATGGTCCTCCCCTC 60.998 63.158 0.00 0.00 0.00 4.30
989 1497 2.125912 ACTGCATGGTCCTCCCCT 59.874 61.111 0.00 0.00 0.00 4.79
990 1498 2.273449 CACTGCATGGTCCTCCCC 59.727 66.667 0.00 0.00 0.00 4.81
991 1499 2.439156 GCACTGCATGGTCCTCCC 60.439 66.667 0.00 0.00 0.00 4.30
1164 1675 4.142227 CCATACACGGCTGGGATATAGTAC 60.142 50.000 0.00 0.00 0.00 2.73
1165 1676 4.021229 CCATACACGGCTGGGATATAGTA 58.979 47.826 0.00 0.00 0.00 1.82
1166 1677 2.832129 CCATACACGGCTGGGATATAGT 59.168 50.000 0.00 0.00 0.00 2.12
1167 1678 3.526931 CCATACACGGCTGGGATATAG 57.473 52.381 0.00 0.00 0.00 1.31
1182 1693 2.828095 TGCACCGCCATGCCATAC 60.828 61.111 4.49 0.00 45.50 2.39
1183 1694 2.828095 GTGCACCGCCATGCCATA 60.828 61.111 5.22 0.00 45.50 2.74
1206 1717 8.869897 CATAATTTGTTCTCACACATACTACGT 58.130 33.333 0.00 0.00 30.32 3.57
1207 1718 8.328146 CCATAATTTGTTCTCACACATACTACG 58.672 37.037 0.00 0.00 30.32 3.51
1208 1719 8.122952 GCCATAATTTGTTCTCACACATACTAC 58.877 37.037 0.00 0.00 30.32 2.73
1209 1720 7.826744 TGCCATAATTTGTTCTCACACATACTA 59.173 33.333 0.00 0.00 30.32 1.82
1210 1721 6.658816 TGCCATAATTTGTTCTCACACATACT 59.341 34.615 0.00 0.00 30.32 2.12
1733 2259 3.151022 CTCCTCGAGGCCCCAGAC 61.151 72.222 27.39 0.00 34.44 3.51
1824 2358 5.060662 CACCGATGTGGATACCTATACAG 57.939 47.826 0.00 0.00 42.00 2.74
1839 2377 2.736721 CCAACTCACTAACACACCGATG 59.263 50.000 0.00 0.00 0.00 3.84
1850 2388 4.002906 AGCAAACGAATCCAACTCACTA 57.997 40.909 0.00 0.00 0.00 2.74
1919 2515 4.295686 GCTTTGGCTTGAGACGAACTCG 62.296 54.545 0.00 0.00 40.73 4.18
1974 2570 4.141505 TGAACTCATCCCAAAGACAGACAA 60.142 41.667 0.00 0.00 0.00 3.18
2064 2661 6.531594 CGTATAGTGTGAATCTCAAAGAAGCA 59.468 38.462 0.00 0.00 0.00 3.91
2068 2665 7.153217 TGACGTATAGTGTGAATCTCAAAGA 57.847 36.000 0.00 0.00 0.00 2.52
2148 2783 4.766404 AAATCGTAGCTCCAACCAAAAG 57.234 40.909 0.00 0.00 0.00 2.27
2261 2917 7.230849 AGTGGAATGCATTTCAAACTGAATA 57.769 32.000 22.09 0.00 36.11 1.75
2493 3150 9.921637 ACAAAGACTTCACAACTTTTTAATCAA 57.078 25.926 0.00 0.00 32.59 2.57
2504 3162 3.632145 ACATCCCACAAAGACTTCACAAC 59.368 43.478 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.