Multiple sequence alignment - TraesCS1D01G414600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G414600 chr1D 100.000 3578 0 0 1 3578 474374066 474377643 0.000000e+00 6608.0
1 TraesCS1D01G414600 chr1D 81.840 1228 192 26 1251 2461 477189233 477190446 0.000000e+00 1003.0
2 TraesCS1D01G414600 chr1B 89.162 3257 167 87 29 3230 659722720 659725845 0.000000e+00 3888.0
3 TraesCS1D01G414600 chr1B 81.442 1234 202 23 1243 2461 664776841 664778062 0.000000e+00 985.0
4 TraesCS1D01G414600 chr1B 90.878 581 24 14 2662 3226 659731414 659731981 0.000000e+00 752.0
5 TraesCS1D01G414600 chr1A 90.565 2724 151 50 359 3033 568730898 568728232 0.000000e+00 3509.0
6 TraesCS1D01G414600 chr1A 80.433 1385 225 37 1103 2461 573242474 573243838 0.000000e+00 1014.0
7 TraesCS1D01G414600 chr1A 83.942 137 10 7 3082 3214 568728212 568728084 1.740000e-23 121.0
8 TraesCS1D01G414600 chr1A 87.324 71 5 4 102 171 9791907 9791840 1.070000e-10 78.7
9 TraesCS1D01G414600 chr1A 100.000 28 0 0 4 31 568731701 568731674 6.000000e-03 52.8
10 TraesCS1D01G414600 chr3D 99.051 738 6 1 721 1457 255525742 255526479 0.000000e+00 1323.0
11 TraesCS1D01G414600 chr3D 87.037 162 14 5 167 322 182338078 182337918 3.670000e-40 176.0
12 TraesCS1D01G414600 chr3D 91.071 56 4 1 115 170 25192243 25192189 1.380000e-09 75.0
13 TraesCS1D01G414600 chr7D 98.881 536 5 1 923 1457 400941703 400942238 0.000000e+00 955.0
14 TraesCS1D01G414600 chr7D 78.871 1453 249 49 1053 2473 451187848 451186422 0.000000e+00 929.0
15 TraesCS1D01G414600 chr7A 78.844 1470 260 46 1030 2473 545934306 545935750 0.000000e+00 944.0
16 TraesCS1D01G414600 chr7A 92.188 64 2 3 109 170 538573567 538573505 1.770000e-13 87.9
17 TraesCS1D01G414600 chr7B 79.009 1453 249 48 1053 2474 470837014 470835587 0.000000e+00 942.0
18 TraesCS1D01G414600 chr4D 81.655 725 109 21 1817 2529 405028915 405029627 6.660000e-162 580.0
19 TraesCS1D01G414600 chr4D 84.472 161 18 3 167 321 23075115 23075274 6.190000e-33 152.0
20 TraesCS1D01G414600 chr6D 74.046 1468 335 42 1020 2461 148482255 148483702 3.120000e-155 558.0
21 TraesCS1D01G414600 chr6B 74.046 1468 335 44 1020 2461 261452650 261454097 3.120000e-155 558.0
22 TraesCS1D01G414600 chr6A 73.695 1475 343 42 1020 2470 199015667 199014214 1.890000e-147 532.0
23 TraesCS1D01G414600 chr4B 79.549 621 111 16 1540 2152 582838213 582838825 2.550000e-116 429.0
24 TraesCS1D01G414600 chr4B 76.211 702 129 35 1103 1785 502961319 502962001 1.590000e-88 337.0
25 TraesCS1D01G414600 chr4B 89.610 154 11 3 167 319 34875240 34875389 1.310000e-44 191.0
26 TraesCS1D01G414600 chr5D 85.897 156 19 3 167 319 522634075 522634230 2.860000e-36 163.0
27 TraesCS1D01G414600 chr5D 94.000 50 2 1 115 164 409448104 409448152 1.380000e-09 75.0
28 TraesCS1D01G414600 chr4A 84.615 156 23 1 167 321 579101472 579101317 1.720000e-33 154.0
29 TraesCS1D01G414600 chr4A 84.459 148 19 3 167 310 466112738 466112885 3.720000e-30 143.0
30 TraesCS1D01G414600 chr4A 90.000 60 4 2 109 168 466112492 466112549 3.830000e-10 76.8
31 TraesCS1D01G414600 chr3A 83.974 156 23 2 167 321 243999936 243999782 8.000000e-32 148.0
32 TraesCS1D01G414600 chr3A 92.063 63 3 2 109 170 57197930 57197869 1.770000e-13 87.9
33 TraesCS1D01G414600 chr2D 83.333 156 23 3 167 320 40515782 40515628 1.340000e-29 141.0
34 TraesCS1D01G414600 chr5B 90.323 62 5 1 108 169 586716897 586716837 2.960000e-11 80.5
35 TraesCS1D01G414600 chr2B 82.895 76 12 1 95 170 569241602 569241528 2.310000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G414600 chr1D 474374066 474377643 3577 False 6608.0 6608 100.000000 1 3578 1 chr1D.!!$F1 3577
1 TraesCS1D01G414600 chr1D 477189233 477190446 1213 False 1003.0 1003 81.840000 1251 2461 1 chr1D.!!$F2 1210
2 TraesCS1D01G414600 chr1B 659722720 659725845 3125 False 3888.0 3888 89.162000 29 3230 1 chr1B.!!$F1 3201
3 TraesCS1D01G414600 chr1B 664776841 664778062 1221 False 985.0 985 81.442000 1243 2461 1 chr1B.!!$F3 1218
4 TraesCS1D01G414600 chr1B 659731414 659731981 567 False 752.0 752 90.878000 2662 3226 1 chr1B.!!$F2 564
5 TraesCS1D01G414600 chr1A 568728084 568731701 3617 True 1227.6 3509 91.502333 4 3214 3 chr1A.!!$R2 3210
6 TraesCS1D01G414600 chr1A 573242474 573243838 1364 False 1014.0 1014 80.433000 1103 2461 1 chr1A.!!$F1 1358
7 TraesCS1D01G414600 chr3D 255525742 255526479 737 False 1323.0 1323 99.051000 721 1457 1 chr3D.!!$F1 736
8 TraesCS1D01G414600 chr7D 400941703 400942238 535 False 955.0 955 98.881000 923 1457 1 chr7D.!!$F1 534
9 TraesCS1D01G414600 chr7D 451186422 451187848 1426 True 929.0 929 78.871000 1053 2473 1 chr7D.!!$R1 1420
10 TraesCS1D01G414600 chr7A 545934306 545935750 1444 False 944.0 944 78.844000 1030 2473 1 chr7A.!!$F1 1443
11 TraesCS1D01G414600 chr7B 470835587 470837014 1427 True 942.0 942 79.009000 1053 2474 1 chr7B.!!$R1 1421
12 TraesCS1D01G414600 chr4D 405028915 405029627 712 False 580.0 580 81.655000 1817 2529 1 chr4D.!!$F2 712
13 TraesCS1D01G414600 chr6D 148482255 148483702 1447 False 558.0 558 74.046000 1020 2461 1 chr6D.!!$F1 1441
14 TraesCS1D01G414600 chr6B 261452650 261454097 1447 False 558.0 558 74.046000 1020 2461 1 chr6B.!!$F1 1441
15 TraesCS1D01G414600 chr6A 199014214 199015667 1453 True 532.0 532 73.695000 1020 2470 1 chr6A.!!$R1 1450
16 TraesCS1D01G414600 chr4B 582838213 582838825 612 False 429.0 429 79.549000 1540 2152 1 chr4B.!!$F3 612
17 TraesCS1D01G414600 chr4B 502961319 502962001 682 False 337.0 337 76.211000 1103 1785 1 chr4B.!!$F2 682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
152 785 0.035439 TCCATGGAGGCCGTCTTTTC 60.035 55.000 11.44 0.00 37.29 2.29 F
635 1315 0.108804 GTCACATTCTTCGAGGGCGA 60.109 55.000 0.00 0.00 46.33 5.54 F
2319 3058 4.222847 GAGGCGTCCCGGATGACC 62.223 72.222 9.07 9.96 35.76 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2115 2854 3.997064 CTCGCTGAAGGGGAGCACG 62.997 68.421 0.0 0.0 45.57 5.34 R
2558 3297 1.171308 CTATTGCTGCTGCTTGTGGT 58.829 50.000 17.0 0.0 40.48 4.16 R
3510 4329 0.033601 AGAGAGAGAGCCGGTGTGAT 60.034 55.000 1.9 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 726 7.423844 TCTCAAAGGATATAGCTCAGTGAAA 57.576 36.000 0.00 0.00 0.00 2.69
97 727 7.268586 TCTCAAAGGATATAGCTCAGTGAAAC 58.731 38.462 0.00 0.00 0.00 2.78
99 729 4.592485 AGGATATAGCTCAGTGAAACGG 57.408 45.455 0.00 0.00 45.86 4.44
100 730 3.322254 AGGATATAGCTCAGTGAAACGGG 59.678 47.826 0.00 0.00 45.86 5.28
104 734 2.568623 AGCTCAGTGAAACGGGAAAT 57.431 45.000 0.00 0.00 45.86 2.17
114 747 4.392138 GTGAAACGGGAAATTAGGAGTGAG 59.608 45.833 0.00 0.00 0.00 3.51
116 749 1.209747 ACGGGAAATTAGGAGTGAGGC 59.790 52.381 0.00 0.00 0.00 4.70
152 785 0.035439 TCCATGGAGGCCGTCTTTTC 60.035 55.000 11.44 0.00 37.29 2.29
164 797 4.229876 GCCGTCTTTTCTGGAAAATTCAG 58.770 43.478 8.64 0.00 39.29 3.02
170 803 8.694394 CGTCTTTTCTGGAAAATTCAGAATTTC 58.306 33.333 19.41 13.15 46.54 2.17
192 825 6.055231 TCGTCCTGAAAATTTACACACTTG 57.945 37.500 0.00 0.00 0.00 3.16
294 927 6.654793 TTTTTCAAAAACCGACTTCATTGG 57.345 33.333 0.00 0.00 37.97 3.16
301 934 1.424493 CCGACTTCATTGGAGCTCGC 61.424 60.000 7.83 1.18 32.66 5.03
311 944 3.579685 GAGCTCGCCCTCCAAAAC 58.420 61.111 0.00 0.00 0.00 2.43
313 946 2.668550 GCTCGCCCTCCAAAACGT 60.669 61.111 0.00 0.00 0.00 3.99
320 953 2.726681 CGCCCTCCAAAACGTATTTTCG 60.727 50.000 0.00 0.00 35.79 3.46
321 954 2.414957 GCCCTCCAAAACGTATTTTCGG 60.415 50.000 0.00 0.00 35.79 4.30
341 976 4.093850 TCGGAAAAATAGCGCTTTCTTACC 59.906 41.667 18.68 12.47 33.06 2.85
342 977 4.094442 CGGAAAAATAGCGCTTTCTTACCT 59.906 41.667 18.68 0.00 33.06 3.08
343 978 5.292589 CGGAAAAATAGCGCTTTCTTACCTA 59.707 40.000 18.68 0.00 33.06 3.08
344 979 6.183360 CGGAAAAATAGCGCTTTCTTACCTAA 60.183 38.462 18.68 0.00 33.06 2.69
345 980 7.466860 CGGAAAAATAGCGCTTTCTTACCTAAT 60.467 37.037 18.68 0.00 33.06 1.73
346 981 8.188799 GGAAAAATAGCGCTTTCTTACCTAATT 58.811 33.333 18.68 1.34 33.06 1.40
348 983 9.923143 AAAAATAGCGCTTTCTTACCTAATTTT 57.077 25.926 18.68 14.36 0.00 1.82
351 986 6.819397 AGCGCTTTCTTACCTAATTTTTCT 57.181 33.333 2.64 0.00 0.00 2.52
354 1031 6.248629 GCGCTTTCTTACCTAATTTTTCTTCG 59.751 38.462 0.00 0.00 0.00 3.79
357 1034 7.271438 GCTTTCTTACCTAATTTTTCTTCGCAG 59.729 37.037 0.00 0.00 0.00 5.18
361 1038 5.372547 ACCTAATTTTTCTTCGCAGGAAC 57.627 39.130 0.00 0.00 0.00 3.62
365 1042 2.631160 TTTTCTTCGCAGGAACCTCA 57.369 45.000 0.00 0.00 0.00 3.86
385 1062 5.102953 TCATCTTCAAATCACACCTAGGG 57.897 43.478 14.81 4.64 0.00 3.53
395 1072 8.944138 TCAAATCACACCTAGGGATAATTATGA 58.056 33.333 14.81 5.83 40.26 2.15
398 1075 5.248477 TCACACCTAGGGATAATTATGAGCC 59.752 44.000 14.81 0.00 0.00 4.70
414 1094 3.538591 TGAGCCAGCTGTATGAGAAATG 58.461 45.455 13.81 0.00 0.00 2.32
421 1101 5.100259 CAGCTGTATGAGAAATGGCAAAAG 58.900 41.667 5.25 0.00 0.00 2.27
525 1205 5.682943 TTATGCATGGCGGATAAAAGTAC 57.317 39.130 10.16 0.00 35.22 2.73
528 1208 4.377021 TGCATGGCGGATAAAAGTACTAG 58.623 43.478 0.00 0.00 0.00 2.57
529 1209 4.141801 TGCATGGCGGATAAAAGTACTAGT 60.142 41.667 0.00 0.00 0.00 2.57
530 1210 4.211374 GCATGGCGGATAAAAGTACTAGTG 59.789 45.833 5.39 0.00 0.00 2.74
531 1211 5.357257 CATGGCGGATAAAAGTACTAGTGT 58.643 41.667 5.39 0.00 0.00 3.55
533 1213 6.720112 TGGCGGATAAAAGTACTAGTGTAT 57.280 37.500 5.39 0.00 0.00 2.29
536 1216 8.863086 TGGCGGATAAAAGTACTAGTGTATAAT 58.137 33.333 5.39 0.00 0.00 1.28
537 1217 9.136952 GGCGGATAAAAGTACTAGTGTATAATG 57.863 37.037 5.39 0.00 0.00 1.90
635 1315 0.108804 GTCACATTCTTCGAGGGCGA 60.109 55.000 0.00 0.00 46.33 5.54
2319 3058 4.222847 GAGGCGTCCCGGATGACC 62.223 72.222 9.07 9.96 35.76 4.02
2558 3297 4.278513 CGGCTTCCCCACCCACAA 62.279 66.667 0.00 0.00 0.00 3.33
2625 3383 5.407407 TCTTCCTGATACAGAAACCTCAC 57.593 43.478 0.00 0.00 32.44 3.51
2627 3385 5.186021 TCTTCCTGATACAGAAACCTCACTC 59.814 44.000 0.00 0.00 32.44 3.51
2630 3389 4.464244 CCTGATACAGAAACCTCACTCAGA 59.536 45.833 0.00 0.00 32.44 3.27
2712 3478 1.194781 AGAATCTCCAGGCGTGGTGT 61.195 55.000 24.03 7.75 45.28 4.16
2857 3652 4.164604 TGTGGTGGTAAGTTTTACTCCAGT 59.835 41.667 12.67 0.00 0.00 4.00
2858 3653 4.753610 GTGGTGGTAAGTTTTACTCCAGTC 59.246 45.833 12.67 4.26 0.00 3.51
2859 3654 4.202388 TGGTGGTAAGTTTTACTCCAGTCC 60.202 45.833 10.10 0.00 0.00 3.85
2860 3655 4.202388 GGTGGTAAGTTTTACTCCAGTCCA 60.202 45.833 0.00 0.00 0.00 4.02
2861 3656 4.995487 GTGGTAAGTTTTACTCCAGTCCAG 59.005 45.833 0.00 0.00 0.00 3.86
2862 3657 4.657039 TGGTAAGTTTTACTCCAGTCCAGT 59.343 41.667 0.00 0.00 0.00 4.00
2877 3675 4.023279 CAGTCCAGTAGTAGCATAGCAGAG 60.023 50.000 0.00 0.00 0.00 3.35
2878 3676 3.886505 GTCCAGTAGTAGCATAGCAGAGT 59.113 47.826 0.00 0.00 0.00 3.24
2879 3677 3.885901 TCCAGTAGTAGCATAGCAGAGTG 59.114 47.826 0.00 0.00 0.00 3.51
2952 3754 7.561021 TGTACATTTGTTGTCTCTTTTAGCA 57.439 32.000 0.00 0.00 39.87 3.49
3076 3889 2.420022 GCTGGTTACAGGCAGTGTATTG 59.580 50.000 0.00 0.00 45.04 1.90
3131 3944 6.902224 TGTATTTGTCATGTTCGATCGATT 57.098 33.333 20.18 4.21 0.00 3.34
3132 3945 7.302350 TGTATTTGTCATGTTCGATCGATTT 57.698 32.000 20.18 3.83 0.00 2.17
3133 3946 7.747888 TGTATTTGTCATGTTCGATCGATTTT 58.252 30.769 20.18 3.44 0.00 1.82
3134 3947 7.902917 TGTATTTGTCATGTTCGATCGATTTTC 59.097 33.333 20.18 10.40 0.00 2.29
3245 4064 8.204836 TCTCTGTTATACTTTAATCCCTTGAGC 58.795 37.037 0.00 0.00 0.00 4.26
3246 4065 7.857456 TCTGTTATACTTTAATCCCTTGAGCA 58.143 34.615 0.00 0.00 0.00 4.26
3247 4066 8.325787 TCTGTTATACTTTAATCCCTTGAGCAA 58.674 33.333 0.00 0.00 0.00 3.91
3248 4067 8.506168 TGTTATACTTTAATCCCTTGAGCAAG 57.494 34.615 3.27 3.27 38.14 4.01
3249 4068 8.325787 TGTTATACTTTAATCCCTTGAGCAAGA 58.674 33.333 11.61 0.00 40.79 3.02
3250 4069 8.613482 GTTATACTTTAATCCCTTGAGCAAGAC 58.387 37.037 11.61 0.00 40.79 3.01
3251 4070 4.003648 ACTTTAATCCCTTGAGCAAGACG 58.996 43.478 11.61 2.03 40.79 4.18
3252 4071 3.973206 TTAATCCCTTGAGCAAGACGA 57.027 42.857 11.61 7.03 40.79 4.20
3253 4072 4.487714 TTAATCCCTTGAGCAAGACGAT 57.512 40.909 11.61 8.81 40.79 3.73
3254 4073 2.322355 ATCCCTTGAGCAAGACGATG 57.678 50.000 11.61 0.00 40.79 3.84
3255 4074 0.250234 TCCCTTGAGCAAGACGATGG 59.750 55.000 11.61 4.31 40.79 3.51
3256 4075 0.036010 CCCTTGAGCAAGACGATGGT 60.036 55.000 11.61 0.00 40.79 3.55
3257 4076 1.081892 CCTTGAGCAAGACGATGGTG 58.918 55.000 11.61 0.00 40.79 4.17
3258 4077 0.445436 CTTGAGCAAGACGATGGTGC 59.555 55.000 4.22 0.00 40.79 5.01
3260 4079 4.291047 AGCAAGACGATGGTGCTG 57.709 55.556 6.80 0.00 46.58 4.41
3261 4080 2.037136 AGCAAGACGATGGTGCTGC 61.037 57.895 6.80 0.00 46.58 5.25
3262 4081 3.044059 GCAAGACGATGGTGCTGCC 62.044 63.158 0.00 0.00 35.36 4.85
3263 4082 2.434884 AAGACGATGGTGCTGCCG 60.435 61.111 0.00 0.00 41.21 5.69
3264 4083 2.942796 AAGACGATGGTGCTGCCGA 61.943 57.895 0.00 0.00 41.21 5.54
3265 4084 2.202932 GACGATGGTGCTGCCGAT 60.203 61.111 0.00 0.00 41.21 4.18
3266 4085 1.815421 GACGATGGTGCTGCCGATT 60.815 57.895 0.00 0.00 41.21 3.34
3267 4086 2.040213 GACGATGGTGCTGCCGATTG 62.040 60.000 0.00 0.00 41.21 2.67
3268 4087 2.108514 CGATGGTGCTGCCGATTGT 61.109 57.895 0.00 0.00 41.21 2.71
3269 4088 1.430632 GATGGTGCTGCCGATTGTG 59.569 57.895 0.00 0.00 41.21 3.33
3270 4089 1.002257 ATGGTGCTGCCGATTGTGA 60.002 52.632 0.00 0.00 41.21 3.58
3271 4090 0.394762 ATGGTGCTGCCGATTGTGAT 60.395 50.000 0.00 0.00 41.21 3.06
3272 4091 1.026182 TGGTGCTGCCGATTGTGATC 61.026 55.000 0.00 0.00 41.21 2.92
3273 4092 0.745845 GGTGCTGCCGATTGTGATCT 60.746 55.000 0.00 0.00 0.00 2.75
3274 4093 1.089920 GTGCTGCCGATTGTGATCTT 58.910 50.000 0.00 0.00 0.00 2.40
3275 4094 1.089112 TGCTGCCGATTGTGATCTTG 58.911 50.000 0.00 0.00 0.00 3.02
3276 4095 1.338960 TGCTGCCGATTGTGATCTTGA 60.339 47.619 0.00 0.00 0.00 3.02
3277 4096 1.739466 GCTGCCGATTGTGATCTTGAA 59.261 47.619 0.00 0.00 0.00 2.69
3278 4097 2.476854 GCTGCCGATTGTGATCTTGAAC 60.477 50.000 0.00 0.00 0.00 3.18
3279 4098 2.743664 CTGCCGATTGTGATCTTGAACA 59.256 45.455 0.00 0.00 0.00 3.18
3280 4099 3.145286 TGCCGATTGTGATCTTGAACAA 58.855 40.909 0.00 0.00 40.36 2.83
3281 4100 3.189080 TGCCGATTGTGATCTTGAACAAG 59.811 43.478 8.09 8.09 39.50 3.16
3291 4110 2.833794 TCTTGAACAAGAACAGACCGG 58.166 47.619 13.78 0.00 43.79 5.28
3292 4111 1.264288 CTTGAACAAGAACAGACCGGC 59.736 52.381 0.00 0.00 40.79 6.13
3293 4112 0.179234 TGAACAAGAACAGACCGGCA 59.821 50.000 0.00 0.00 0.00 5.69
3294 4113 1.202758 TGAACAAGAACAGACCGGCAT 60.203 47.619 0.00 0.00 0.00 4.40
3295 4114 1.464997 GAACAAGAACAGACCGGCATC 59.535 52.381 0.00 0.00 0.00 3.91
3296 4115 0.687354 ACAAGAACAGACCGGCATCT 59.313 50.000 0.00 0.00 0.00 2.90
3301 4120 3.895025 CAGACCGGCATCTGTTGG 58.105 61.111 12.79 0.00 41.12 3.77
3302 4121 1.296392 CAGACCGGCATCTGTTGGA 59.704 57.895 12.79 0.00 41.12 3.53
3303 4122 0.107508 CAGACCGGCATCTGTTGGAT 60.108 55.000 12.79 0.00 41.12 3.41
3304 4123 0.179000 AGACCGGCATCTGTTGGATC 59.821 55.000 0.00 0.00 31.27 3.36
3305 4124 0.179000 GACCGGCATCTGTTGGATCT 59.821 55.000 0.00 0.00 31.27 2.75
3306 4125 0.620556 ACCGGCATCTGTTGGATCTT 59.379 50.000 0.00 0.00 31.27 2.40
3307 4126 1.019673 CCGGCATCTGTTGGATCTTG 58.980 55.000 0.00 0.00 31.27 3.02
3308 4127 0.379669 CGGCATCTGTTGGATCTTGC 59.620 55.000 0.00 0.00 31.27 4.01
3309 4128 0.379669 GGCATCTGTTGGATCTTGCG 59.620 55.000 0.00 0.00 31.27 4.85
3310 4129 1.089920 GCATCTGTTGGATCTTGCGT 58.910 50.000 0.00 0.00 31.27 5.24
3311 4130 1.470098 GCATCTGTTGGATCTTGCGTT 59.530 47.619 0.00 0.00 31.27 4.84
3312 4131 2.730090 GCATCTGTTGGATCTTGCGTTG 60.730 50.000 0.00 0.00 31.27 4.10
3313 4132 2.542020 TCTGTTGGATCTTGCGTTGA 57.458 45.000 0.00 0.00 0.00 3.18
3314 4133 2.143122 TCTGTTGGATCTTGCGTTGAC 58.857 47.619 0.00 0.00 0.00 3.18
3315 4134 0.865111 TGTTGGATCTTGCGTTGACG 59.135 50.000 0.00 0.00 43.27 4.35
3316 4135 1.144969 GTTGGATCTTGCGTTGACGA 58.855 50.000 7.85 0.00 43.02 4.20
3317 4136 1.529438 GTTGGATCTTGCGTTGACGAA 59.471 47.619 7.85 0.00 43.02 3.85
3318 4137 2.093306 TGGATCTTGCGTTGACGAAT 57.907 45.000 7.85 0.00 43.02 3.34
3319 4138 2.422597 TGGATCTTGCGTTGACGAATT 58.577 42.857 7.85 0.00 43.02 2.17
3320 4139 2.811431 TGGATCTTGCGTTGACGAATTT 59.189 40.909 7.85 0.00 43.02 1.82
3321 4140 3.163594 GGATCTTGCGTTGACGAATTTG 58.836 45.455 7.85 0.00 43.02 2.32
3322 4141 2.031037 TCTTGCGTTGACGAATTTGC 57.969 45.000 7.85 0.00 43.02 3.68
3323 4142 1.332065 TCTTGCGTTGACGAATTTGCA 59.668 42.857 7.85 0.00 43.02 4.08
3324 4143 1.710249 CTTGCGTTGACGAATTTGCAG 59.290 47.619 7.85 0.00 43.02 4.41
3325 4144 0.940833 TGCGTTGACGAATTTGCAGA 59.059 45.000 7.85 0.00 43.02 4.26
3326 4145 1.535028 TGCGTTGACGAATTTGCAGAT 59.465 42.857 7.85 0.00 43.02 2.90
3327 4146 2.031245 TGCGTTGACGAATTTGCAGATT 60.031 40.909 7.85 1.40 43.02 2.40
3328 4147 2.979813 GCGTTGACGAATTTGCAGATTT 59.020 40.909 7.85 0.00 43.02 2.17
3329 4148 3.058129 GCGTTGACGAATTTGCAGATTTC 59.942 43.478 7.85 0.00 43.02 2.17
3330 4149 4.218265 CGTTGACGAATTTGCAGATTTCA 58.782 39.130 3.69 2.34 43.02 2.69
3331 4150 4.319115 CGTTGACGAATTTGCAGATTTCAG 59.681 41.667 3.69 2.34 43.02 3.02
3332 4151 5.215160 GTTGACGAATTTGCAGATTTCAGT 58.785 37.500 3.69 5.34 0.00 3.41
3333 4152 5.437289 TGACGAATTTGCAGATTTCAGTT 57.563 34.783 3.69 0.00 0.00 3.16
3334 4153 5.451908 TGACGAATTTGCAGATTTCAGTTC 58.548 37.500 3.69 0.00 0.00 3.01
3335 4154 5.239306 TGACGAATTTGCAGATTTCAGTTCT 59.761 36.000 3.69 0.00 0.00 3.01
3336 4155 6.076981 ACGAATTTGCAGATTTCAGTTCTT 57.923 33.333 3.69 0.00 0.00 2.52
3337 4156 6.145535 ACGAATTTGCAGATTTCAGTTCTTC 58.854 36.000 3.69 0.00 0.00 2.87
3338 4157 6.016777 ACGAATTTGCAGATTTCAGTTCTTCT 60.017 34.615 3.69 0.00 0.00 2.85
3339 4158 6.860023 CGAATTTGCAGATTTCAGTTCTTCTT 59.140 34.615 3.69 0.00 0.00 2.52
3340 4159 7.060403 CGAATTTGCAGATTTCAGTTCTTCTTC 59.940 37.037 3.69 0.00 0.00 2.87
3341 4160 6.949352 TTTGCAGATTTCAGTTCTTCTTCT 57.051 33.333 0.00 0.00 0.00 2.85
3342 4161 6.949352 TTGCAGATTTCAGTTCTTCTTCTT 57.051 33.333 0.00 0.00 0.00 2.52
3343 4162 6.949352 TGCAGATTTCAGTTCTTCTTCTTT 57.051 33.333 0.00 0.00 0.00 2.52
3344 4163 6.963796 TGCAGATTTCAGTTCTTCTTCTTTC 58.036 36.000 0.00 0.00 0.00 2.62
3345 4164 6.543465 TGCAGATTTCAGTTCTTCTTCTTTCA 59.457 34.615 0.00 0.00 0.00 2.69
3346 4165 7.230108 TGCAGATTTCAGTTCTTCTTCTTTCAT 59.770 33.333 0.00 0.00 0.00 2.57
3347 4166 7.537991 GCAGATTTCAGTTCTTCTTCTTTCATG 59.462 37.037 0.00 0.00 0.00 3.07
3348 4167 8.566260 CAGATTTCAGTTCTTCTTCTTTCATGT 58.434 33.333 0.00 0.00 0.00 3.21
3349 4168 9.129532 AGATTTCAGTTCTTCTTCTTTCATGTT 57.870 29.630 0.00 0.00 0.00 2.71
3350 4169 9.178427 GATTTCAGTTCTTCTTCTTTCATGTTG 57.822 33.333 0.00 0.00 0.00 3.33
3351 4170 7.864108 TTCAGTTCTTCTTCTTTCATGTTGA 57.136 32.000 0.00 0.00 0.00 3.18
3352 4171 7.251704 TCAGTTCTTCTTCTTTCATGTTGAC 57.748 36.000 0.00 0.00 0.00 3.18
3353 4172 6.823182 TCAGTTCTTCTTCTTTCATGTTGACA 59.177 34.615 0.00 0.00 0.00 3.58
3354 4173 7.500227 TCAGTTCTTCTTCTTTCATGTTGACAT 59.500 33.333 0.00 0.00 36.96 3.06
3364 4183 1.097232 ATGTTGACATGGATGCACGG 58.903 50.000 0.00 0.00 34.83 4.94
3365 4184 0.036022 TGTTGACATGGATGCACGGA 59.964 50.000 0.00 0.00 0.00 4.69
3366 4185 0.729116 GTTGACATGGATGCACGGAG 59.271 55.000 0.00 0.00 0.00 4.63
3367 4186 0.392863 TTGACATGGATGCACGGAGG 60.393 55.000 0.00 0.00 0.00 4.30
3368 4187 2.124570 ACATGGATGCACGGAGGC 60.125 61.111 0.00 0.00 0.00 4.70
3377 4196 1.388547 TGCACGGAGGCATATTTTCC 58.611 50.000 0.00 0.00 39.25 3.13
3378 4197 1.064758 TGCACGGAGGCATATTTTCCT 60.065 47.619 0.00 0.00 39.25 3.36
3379 4198 1.334869 GCACGGAGGCATATTTTCCTG 59.665 52.381 0.00 0.00 31.71 3.86
3380 4199 2.917933 CACGGAGGCATATTTTCCTGA 58.082 47.619 0.00 0.00 31.71 3.86
3381 4200 2.874701 CACGGAGGCATATTTTCCTGAG 59.125 50.000 0.00 0.00 31.71 3.35
3382 4201 2.158755 ACGGAGGCATATTTTCCTGAGG 60.159 50.000 0.00 0.00 31.71 3.86
3383 4202 2.234143 GGAGGCATATTTTCCTGAGGC 58.766 52.381 0.00 0.00 31.71 4.70
3384 4203 2.234143 GAGGCATATTTTCCTGAGGCC 58.766 52.381 0.00 0.00 40.18 5.19
3385 4204 1.133356 AGGCATATTTTCCTGAGGCCC 60.133 52.381 0.00 0.00 40.75 5.80
3386 4205 1.411501 GGCATATTTTCCTGAGGCCCA 60.412 52.381 0.00 0.00 33.93 5.36
3387 4206 1.959282 GCATATTTTCCTGAGGCCCAG 59.041 52.381 12.83 12.83 42.55 4.45
3395 4214 3.336122 CTGAGGCCCAGGCATTATC 57.664 57.895 11.50 3.47 44.11 1.75
3396 4215 0.769873 CTGAGGCCCAGGCATTATCT 59.230 55.000 11.50 0.00 44.11 1.98
3397 4216 1.144503 CTGAGGCCCAGGCATTATCTT 59.855 52.381 11.50 0.00 44.11 2.40
3398 4217 1.133699 TGAGGCCCAGGCATTATCTTG 60.134 52.381 11.50 0.00 44.11 3.02
3399 4218 0.186873 AGGCCCAGGCATTATCTTGG 59.813 55.000 11.50 0.00 44.11 3.61
3400 4219 0.106015 GGCCCAGGCATTATCTTGGT 60.106 55.000 11.50 0.00 44.11 3.67
3401 4220 1.322442 GCCCAGGCATTATCTTGGTC 58.678 55.000 3.12 0.00 41.49 4.02
3402 4221 1.133668 GCCCAGGCATTATCTTGGTCT 60.134 52.381 3.12 0.00 41.49 3.85
3403 4222 2.856222 CCCAGGCATTATCTTGGTCTC 58.144 52.381 0.00 0.00 0.00 3.36
3404 4223 2.441001 CCCAGGCATTATCTTGGTCTCT 59.559 50.000 0.00 0.00 0.00 3.10
3405 4224 3.474600 CCAGGCATTATCTTGGTCTCTG 58.525 50.000 0.00 0.00 0.00 3.35
3406 4225 3.135348 CCAGGCATTATCTTGGTCTCTGA 59.865 47.826 0.00 0.00 0.00 3.27
3407 4226 4.202440 CCAGGCATTATCTTGGTCTCTGAT 60.202 45.833 0.00 0.00 0.00 2.90
3408 4227 5.374921 CAGGCATTATCTTGGTCTCTGATT 58.625 41.667 0.00 0.00 0.00 2.57
3409 4228 5.826737 CAGGCATTATCTTGGTCTCTGATTT 59.173 40.000 0.00 0.00 0.00 2.17
3410 4229 6.994496 CAGGCATTATCTTGGTCTCTGATTTA 59.006 38.462 0.00 0.00 0.00 1.40
3411 4230 6.995091 AGGCATTATCTTGGTCTCTGATTTAC 59.005 38.462 0.00 0.00 0.00 2.01
3412 4231 6.995091 GGCATTATCTTGGTCTCTGATTTACT 59.005 38.462 0.00 0.00 0.00 2.24
3413 4232 7.041508 GGCATTATCTTGGTCTCTGATTTACTG 60.042 40.741 0.00 0.00 0.00 2.74
3414 4233 7.497249 GCATTATCTTGGTCTCTGATTTACTGT 59.503 37.037 0.00 0.00 0.00 3.55
3415 4234 9.039870 CATTATCTTGGTCTCTGATTTACTGTC 57.960 37.037 0.00 0.00 0.00 3.51
3416 4235 6.611613 ATCTTGGTCTCTGATTTACTGTCA 57.388 37.500 0.00 0.00 0.00 3.58
3417 4236 6.419484 TCTTGGTCTCTGATTTACTGTCAA 57.581 37.500 0.00 0.00 0.00 3.18
3418 4237 6.459066 TCTTGGTCTCTGATTTACTGTCAAG 58.541 40.000 0.00 0.00 0.00 3.02
3419 4238 6.267699 TCTTGGTCTCTGATTTACTGTCAAGA 59.732 38.462 0.00 0.00 35.86 3.02
3420 4239 6.030548 TGGTCTCTGATTTACTGTCAAGAG 57.969 41.667 0.00 0.00 0.00 2.85
3421 4240 4.867608 GGTCTCTGATTTACTGTCAAGAGC 59.132 45.833 0.00 0.00 31.27 4.09
3422 4241 5.473931 GTCTCTGATTTACTGTCAAGAGCA 58.526 41.667 0.00 0.00 0.00 4.26
3423 4242 6.105333 GTCTCTGATTTACTGTCAAGAGCAT 58.895 40.000 0.00 0.00 0.00 3.79
3424 4243 6.593382 GTCTCTGATTTACTGTCAAGAGCATT 59.407 38.462 0.00 0.00 0.00 3.56
3425 4244 7.118971 GTCTCTGATTTACTGTCAAGAGCATTT 59.881 37.037 0.00 0.00 0.00 2.32
3426 4245 7.332926 TCTCTGATTTACTGTCAAGAGCATTTC 59.667 37.037 0.00 0.00 0.00 2.17
3427 4246 7.164122 TCTGATTTACTGTCAAGAGCATTTCT 58.836 34.615 0.00 0.00 37.93 2.52
3428 4247 7.332926 TCTGATTTACTGTCAAGAGCATTTCTC 59.667 37.037 0.00 0.00 42.21 2.87
3436 4255 3.842869 GAGCATTTCTCTCCGGTGT 57.157 52.632 0.00 0.00 38.78 4.16
3437 4256 2.100605 GAGCATTTCTCTCCGGTGTT 57.899 50.000 0.00 0.00 38.78 3.32
3438 4257 2.427506 GAGCATTTCTCTCCGGTGTTT 58.572 47.619 0.00 0.00 38.78 2.83
3439 4258 2.416893 GAGCATTTCTCTCCGGTGTTTC 59.583 50.000 0.00 0.00 38.78 2.78
3440 4259 2.039084 AGCATTTCTCTCCGGTGTTTCT 59.961 45.455 0.00 0.00 0.00 2.52
3441 4260 2.160417 GCATTTCTCTCCGGTGTTTCTG 59.840 50.000 0.00 0.00 0.00 3.02
3442 4261 3.664107 CATTTCTCTCCGGTGTTTCTGA 58.336 45.455 0.00 0.00 0.00 3.27
3443 4262 3.830744 TTTCTCTCCGGTGTTTCTGAA 57.169 42.857 0.00 0.00 0.00 3.02
3444 4263 2.814280 TCTCTCCGGTGTTTCTGAAC 57.186 50.000 0.00 0.00 36.29 3.18
3445 4264 2.036387 TCTCTCCGGTGTTTCTGAACA 58.964 47.619 0.00 0.00 43.23 3.18
3446 4265 2.632996 TCTCTCCGGTGTTTCTGAACAT 59.367 45.455 0.00 0.00 46.63 2.71
3447 4266 3.071023 TCTCTCCGGTGTTTCTGAACATT 59.929 43.478 0.00 0.00 46.63 2.71
3448 4267 3.399330 TCTCCGGTGTTTCTGAACATTC 58.601 45.455 0.00 0.00 46.63 2.67
3449 4268 3.071023 TCTCCGGTGTTTCTGAACATTCT 59.929 43.478 0.00 0.00 46.63 2.40
3450 4269 3.138304 TCCGGTGTTTCTGAACATTCTG 58.862 45.455 0.00 0.00 46.63 3.02
3451 4270 3.138304 CCGGTGTTTCTGAACATTCTGA 58.862 45.455 0.00 0.00 46.63 3.27
3452 4271 3.563808 CCGGTGTTTCTGAACATTCTGAA 59.436 43.478 9.19 9.19 46.63 3.02
3453 4272 4.319766 CCGGTGTTTCTGAACATTCTGAAG 60.320 45.833 12.05 3.52 46.63 3.02
3454 4273 4.319766 CGGTGTTTCTGAACATTCTGAAGG 60.320 45.833 12.05 0.00 46.63 3.46
3455 4274 4.022849 GGTGTTTCTGAACATTCTGAAGGG 60.023 45.833 7.01 0.00 46.63 3.95
3456 4275 3.569701 TGTTTCTGAACATTCTGAAGGGC 59.430 43.478 7.01 0.00 43.07 5.19
3457 4276 3.507162 TTCTGAACATTCTGAAGGGCA 57.493 42.857 7.01 3.75 39.29 5.36
3458 4277 3.507162 TCTGAACATTCTGAAGGGCAA 57.493 42.857 7.01 0.00 33.11 4.52
3459 4278 3.831323 TCTGAACATTCTGAAGGGCAAA 58.169 40.909 7.01 0.00 33.11 3.68
3460 4279 4.410099 TCTGAACATTCTGAAGGGCAAAT 58.590 39.130 7.01 0.00 33.11 2.32
3461 4280 5.569355 TCTGAACATTCTGAAGGGCAAATA 58.431 37.500 7.01 0.00 33.11 1.40
3462 4281 5.415701 TCTGAACATTCTGAAGGGCAAATAC 59.584 40.000 7.01 0.00 33.11 1.89
3463 4282 5.076182 TGAACATTCTGAAGGGCAAATACA 58.924 37.500 7.01 0.00 0.00 2.29
3464 4283 5.183713 TGAACATTCTGAAGGGCAAATACAG 59.816 40.000 7.01 0.00 0.00 2.74
3465 4284 4.922206 ACATTCTGAAGGGCAAATACAGA 58.078 39.130 7.01 0.00 36.11 3.41
3466 4285 5.513233 ACATTCTGAAGGGCAAATACAGAT 58.487 37.500 7.01 0.00 37.43 2.90
3467 4286 6.662755 ACATTCTGAAGGGCAAATACAGATA 58.337 36.000 7.01 0.00 37.43 1.98
3468 4287 6.769822 ACATTCTGAAGGGCAAATACAGATAG 59.230 38.462 7.01 0.00 37.43 2.08
3469 4288 4.708177 TCTGAAGGGCAAATACAGATAGC 58.292 43.478 0.00 0.00 33.57 2.97
3470 4289 3.466836 TGAAGGGCAAATACAGATAGCG 58.533 45.455 0.00 0.00 0.00 4.26
3471 4290 2.550830 AGGGCAAATACAGATAGCGG 57.449 50.000 0.00 0.00 0.00 5.52
3472 4291 1.072331 AGGGCAAATACAGATAGCGGG 59.928 52.381 0.00 0.00 0.00 6.13
3473 4292 0.875059 GGCAAATACAGATAGCGGGC 59.125 55.000 0.00 0.00 0.00 6.13
3474 4293 1.543429 GGCAAATACAGATAGCGGGCT 60.543 52.381 0.00 0.00 0.00 5.19
3475 4294 1.801178 GCAAATACAGATAGCGGGCTC 59.199 52.381 0.00 0.00 0.00 4.70
3476 4295 2.806745 GCAAATACAGATAGCGGGCTCA 60.807 50.000 0.00 0.00 0.00 4.26
3477 4296 3.668447 CAAATACAGATAGCGGGCTCAT 58.332 45.455 0.00 0.00 0.00 2.90
3478 4297 3.325293 AATACAGATAGCGGGCTCATG 57.675 47.619 0.00 0.00 0.00 3.07
3479 4298 0.318441 TACAGATAGCGGGCTCATGC 59.682 55.000 0.00 0.00 38.76 4.06
3480 4299 1.070275 CAGATAGCGGGCTCATGCA 59.930 57.895 0.00 0.00 41.91 3.96
3481 4300 0.949588 CAGATAGCGGGCTCATGCAG 60.950 60.000 0.00 0.00 41.91 4.41
3482 4301 1.117749 AGATAGCGGGCTCATGCAGA 61.118 55.000 0.00 0.00 41.91 4.26
3483 4302 0.250038 GATAGCGGGCTCATGCAGAA 60.250 55.000 0.00 0.00 41.91 3.02
3484 4303 0.533755 ATAGCGGGCTCATGCAGAAC 60.534 55.000 0.00 0.00 41.91 3.01
3485 4304 1.898330 TAGCGGGCTCATGCAGAACA 61.898 55.000 0.00 0.00 41.91 3.18
3486 4305 2.758089 GCGGGCTCATGCAGAACAG 61.758 63.158 0.00 0.00 41.91 3.16
3487 4306 1.078918 CGGGCTCATGCAGAACAGA 60.079 57.895 0.00 0.00 41.91 3.41
3488 4307 1.088340 CGGGCTCATGCAGAACAGAG 61.088 60.000 0.00 0.00 41.91 3.35
3489 4308 0.251354 GGGCTCATGCAGAACAGAGA 59.749 55.000 0.00 0.00 41.91 3.10
3490 4309 1.367659 GGCTCATGCAGAACAGAGAC 58.632 55.000 0.00 0.00 41.91 3.36
3491 4310 0.997932 GCTCATGCAGAACAGAGACG 59.002 55.000 0.00 0.00 39.41 4.18
3492 4311 1.403382 GCTCATGCAGAACAGAGACGA 60.403 52.381 0.00 0.00 39.41 4.20
3493 4312 2.928301 GCTCATGCAGAACAGAGACGAA 60.928 50.000 0.00 0.00 39.41 3.85
3494 4313 2.922387 CTCATGCAGAACAGAGACGAAG 59.078 50.000 0.00 0.00 0.00 3.79
3495 4314 2.558359 TCATGCAGAACAGAGACGAAGA 59.442 45.455 0.00 0.00 0.00 2.87
3496 4315 3.194329 TCATGCAGAACAGAGACGAAGAT 59.806 43.478 0.00 0.00 0.00 2.40
3497 4316 2.951726 TGCAGAACAGAGACGAAGATG 58.048 47.619 0.00 0.00 0.00 2.90
3498 4317 2.558359 TGCAGAACAGAGACGAAGATGA 59.442 45.455 0.00 0.00 0.00 2.92
3499 4318 3.194329 TGCAGAACAGAGACGAAGATGAT 59.806 43.478 0.00 0.00 0.00 2.45
3500 4319 3.551082 GCAGAACAGAGACGAAGATGATG 59.449 47.826 0.00 0.00 0.00 3.07
3501 4320 3.551082 CAGAACAGAGACGAAGATGATGC 59.449 47.826 0.00 0.00 0.00 3.91
3502 4321 2.200792 ACAGAGACGAAGATGATGCG 57.799 50.000 0.00 0.00 0.00 4.73
3503 4322 1.474478 ACAGAGACGAAGATGATGCGT 59.526 47.619 0.00 0.00 41.45 5.24
3504 4323 1.851053 CAGAGACGAAGATGATGCGTG 59.149 52.381 0.00 0.00 38.51 5.34
3505 4324 1.474478 AGAGACGAAGATGATGCGTGT 59.526 47.619 0.00 0.00 38.51 4.49
3506 4325 1.849219 GAGACGAAGATGATGCGTGTC 59.151 52.381 0.00 0.00 40.25 3.67
3507 4326 1.202348 AGACGAAGATGATGCGTGTCA 59.798 47.619 0.00 0.00 38.51 3.58
3508 4327 1.585668 GACGAAGATGATGCGTGTCAG 59.414 52.381 0.00 0.00 38.51 3.51
3509 4328 0.299895 CGAAGATGATGCGTGTCAGC 59.700 55.000 0.14 0.14 34.84 4.26
3516 4335 3.641492 TGCGTGTCAGCATCACAC 58.359 55.556 3.40 3.40 42.92 3.82
3517 4336 1.960763 TGCGTGTCAGCATCACACC 60.961 57.895 7.12 2.41 42.92 4.16
3518 4337 3.015293 GCGTGTCAGCATCACACCG 62.015 63.158 7.12 4.61 41.04 4.94
3519 4338 2.382746 CGTGTCAGCATCACACCGG 61.383 63.158 0.00 0.00 41.04 5.28
3520 4339 2.358615 TGTCAGCATCACACCGGC 60.359 61.111 0.00 0.00 0.00 6.13
3521 4340 2.046892 GTCAGCATCACACCGGCT 60.047 61.111 0.00 0.00 38.70 5.52
3522 4341 2.103042 GTCAGCATCACACCGGCTC 61.103 63.158 0.00 0.00 35.27 4.70
3523 4342 2.267006 CAGCATCACACCGGCTCT 59.733 61.111 0.00 0.00 35.27 4.09
3524 4343 1.812922 CAGCATCACACCGGCTCTC 60.813 63.158 0.00 0.00 35.27 3.20
3525 4344 1.986757 AGCATCACACCGGCTCTCT 60.987 57.895 0.00 0.00 30.74 3.10
3526 4345 1.520342 GCATCACACCGGCTCTCTC 60.520 63.158 0.00 0.00 0.00 3.20
3527 4346 1.954362 GCATCACACCGGCTCTCTCT 61.954 60.000 0.00 0.00 0.00 3.10
3528 4347 0.102120 CATCACACCGGCTCTCTCTC 59.898 60.000 0.00 0.00 0.00 3.20
3529 4348 0.033601 ATCACACCGGCTCTCTCTCT 60.034 55.000 0.00 0.00 0.00 3.10
3530 4349 0.678366 TCACACCGGCTCTCTCTCTC 60.678 60.000 0.00 0.00 0.00 3.20
3531 4350 0.679640 CACACCGGCTCTCTCTCTCT 60.680 60.000 0.00 0.00 0.00 3.10
3532 4351 0.393808 ACACCGGCTCTCTCTCTCTC 60.394 60.000 0.00 0.00 0.00 3.20
3533 4352 1.153249 ACCGGCTCTCTCTCTCTCG 60.153 63.158 0.00 0.00 0.00 4.04
3534 4353 1.153249 CCGGCTCTCTCTCTCTCGT 60.153 63.158 0.00 0.00 0.00 4.18
3535 4354 1.436195 CCGGCTCTCTCTCTCTCGTG 61.436 65.000 0.00 0.00 0.00 4.35
3536 4355 0.742990 CGGCTCTCTCTCTCTCGTGT 60.743 60.000 0.00 0.00 0.00 4.49
3537 4356 1.014352 GGCTCTCTCTCTCTCGTGTC 58.986 60.000 0.00 0.00 0.00 3.67
3538 4357 1.014352 GCTCTCTCTCTCTCGTGTCC 58.986 60.000 0.00 0.00 0.00 4.02
3539 4358 1.677518 GCTCTCTCTCTCTCGTGTCCA 60.678 57.143 0.00 0.00 0.00 4.02
3540 4359 2.006888 CTCTCTCTCTCTCGTGTCCAC 58.993 57.143 0.00 0.00 0.00 4.02
3541 4360 1.626321 TCTCTCTCTCTCGTGTCCACT 59.374 52.381 0.00 0.00 0.00 4.00
3542 4361 2.039216 TCTCTCTCTCTCGTGTCCACTT 59.961 50.000 0.00 0.00 0.00 3.16
3543 4362 2.418628 CTCTCTCTCTCGTGTCCACTTC 59.581 54.545 0.00 0.00 0.00 3.01
3544 4363 1.470890 CTCTCTCTCGTGTCCACTTCC 59.529 57.143 0.00 0.00 0.00 3.46
3545 4364 1.074084 TCTCTCTCGTGTCCACTTCCT 59.926 52.381 0.00 0.00 0.00 3.36
3546 4365 1.201181 CTCTCTCGTGTCCACTTCCTG 59.799 57.143 0.00 0.00 0.00 3.86
3547 4366 0.389166 CTCTCGTGTCCACTTCCTGC 60.389 60.000 0.00 0.00 0.00 4.85
3548 4367 1.112916 TCTCGTGTCCACTTCCTGCA 61.113 55.000 0.00 0.00 0.00 4.41
3549 4368 0.249868 CTCGTGTCCACTTCCTGCAA 60.250 55.000 0.00 0.00 0.00 4.08
3550 4369 0.531974 TCGTGTCCACTTCCTGCAAC 60.532 55.000 0.00 0.00 0.00 4.17
3551 4370 0.813610 CGTGTCCACTTCCTGCAACA 60.814 55.000 0.00 0.00 0.00 3.33
3552 4371 0.947244 GTGTCCACTTCCTGCAACAG 59.053 55.000 0.00 0.00 0.00 3.16
3553 4372 0.819259 TGTCCACTTCCTGCAACAGC 60.819 55.000 0.00 0.00 0.00 4.40
3554 4373 1.597854 TCCACTTCCTGCAACAGCG 60.598 57.895 0.00 0.00 0.00 5.18
3555 4374 2.253452 CACTTCCTGCAACAGCGC 59.747 61.111 0.00 0.00 0.00 5.92
3556 4375 2.203195 ACTTCCTGCAACAGCGCA 60.203 55.556 11.47 0.00 40.32 6.09
3570 4389 3.869272 CGCAGCAGGTTCGGCATC 61.869 66.667 0.00 0.00 0.00 3.91
3571 4390 3.869272 GCAGCAGGTTCGGCATCG 61.869 66.667 0.00 0.00 37.82 3.84
3572 4391 2.125552 CAGCAGGTTCGGCATCGA 60.126 61.111 0.00 0.00 44.44 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.662026 GGCTTAACCGCAACGACAAAG 60.662 52.381 0.00 0.00 0.00 2.77
1 2 0.308376 GGCTTAACCGCAACGACAAA 59.692 50.000 0.00 0.00 0.00 2.83
2 3 0.814410 TGGCTTAACCGCAACGACAA 60.814 50.000 0.00 0.00 43.94 3.18
41 42 4.026356 ACAACTGCTTCTTAGGCTCATT 57.974 40.909 0.00 0.00 0.00 2.57
47 48 8.779354 AAAAGACTATACAACTGCTTCTTAGG 57.221 34.615 0.00 0.00 0.00 2.69
52 53 7.891183 TGAGAAAAGACTATACAACTGCTTC 57.109 36.000 0.00 0.00 0.00 3.86
53 54 8.677148 TTTGAGAAAAGACTATACAACTGCTT 57.323 30.769 0.00 0.00 0.00 3.91
96 726 1.209747 GCCTCACTCCTAATTTCCCGT 59.790 52.381 0.00 0.00 0.00 5.28
97 727 1.806623 CGCCTCACTCCTAATTTCCCG 60.807 57.143 0.00 0.00 0.00 5.14
99 729 2.693267 ACGCCTCACTCCTAATTTCC 57.307 50.000 0.00 0.00 0.00 3.13
100 730 4.379499 CCAAAACGCCTCACTCCTAATTTC 60.379 45.833 0.00 0.00 0.00 2.17
104 734 1.880646 GCCAAAACGCCTCACTCCTAA 60.881 52.381 0.00 0.00 0.00 2.69
114 747 4.103103 GCCGAGAGCCAAAACGCC 62.103 66.667 0.00 0.00 34.35 5.68
152 785 6.072508 TCAGGACGAAATTCTGAATTTTCCAG 60.073 38.462 29.99 25.71 40.97 3.86
164 797 7.860872 AGTGTGTAAATTTTCAGGACGAAATTC 59.139 33.333 0.00 0.00 43.12 2.17
170 803 5.681105 CACAAGTGTGTAAATTTTCAGGACG 59.319 40.000 3.17 0.00 40.96 4.79
235 868 9.588774 CGTTCAAATTCTTATTCTTACGTTTCA 57.411 29.630 0.00 0.00 0.00 2.69
236 869 9.801714 TCGTTCAAATTCTTATTCTTACGTTTC 57.198 29.630 0.00 0.00 0.00 2.78
285 918 1.078143 GGGCGAGCTCCAATGAAGT 60.078 57.895 8.47 0.00 0.00 3.01
287 920 1.221840 GAGGGCGAGCTCCAATGAA 59.778 57.895 8.47 0.00 0.00 2.57
290 923 2.688666 TGGAGGGCGAGCTCCAAT 60.689 61.111 8.47 0.00 45.68 3.16
294 927 2.391389 CGTTTTGGAGGGCGAGCTC 61.391 63.158 2.73 2.73 0.00 4.09
311 944 4.584394 AGCGCTATTTTTCCGAAAATACG 58.416 39.130 8.99 9.49 42.21 3.06
313 946 6.848451 AGAAAGCGCTATTTTTCCGAAAATA 58.152 32.000 12.05 3.92 42.21 1.40
320 953 5.562506 AGGTAAGAAAGCGCTATTTTTCC 57.437 39.130 12.05 12.30 34.60 3.13
321 954 9.569167 AAATTAGGTAAGAAAGCGCTATTTTTC 57.431 29.630 12.05 11.31 34.34 2.29
341 976 5.181245 TGAGGTTCCTGCGAAGAAAAATTAG 59.819 40.000 0.00 0.00 0.00 1.73
342 977 5.067273 TGAGGTTCCTGCGAAGAAAAATTA 58.933 37.500 0.00 0.00 0.00 1.40
343 978 3.888930 TGAGGTTCCTGCGAAGAAAAATT 59.111 39.130 0.00 0.00 0.00 1.82
344 979 3.486383 TGAGGTTCCTGCGAAGAAAAAT 58.514 40.909 0.00 0.00 0.00 1.82
345 980 2.925724 TGAGGTTCCTGCGAAGAAAAA 58.074 42.857 0.00 0.00 0.00 1.94
346 981 2.631160 TGAGGTTCCTGCGAAGAAAA 57.369 45.000 0.00 0.00 0.00 2.29
348 983 1.902508 AGATGAGGTTCCTGCGAAGAA 59.097 47.619 0.00 0.00 0.00 2.52
351 986 1.623311 TGAAGATGAGGTTCCTGCGAA 59.377 47.619 0.00 0.00 0.00 4.70
354 1031 4.012374 TGATTTGAAGATGAGGTTCCTGC 58.988 43.478 0.00 0.00 0.00 4.85
357 1034 4.156739 GGTGTGATTTGAAGATGAGGTTCC 59.843 45.833 0.00 0.00 0.00 3.62
361 1038 5.121811 CCTAGGTGTGATTTGAAGATGAGG 58.878 45.833 0.00 0.00 0.00 3.86
365 1042 5.983333 ATCCCTAGGTGTGATTTGAAGAT 57.017 39.130 8.29 0.00 0.00 2.40
385 1062 7.326454 TCTCATACAGCTGGCTCATAATTATC 58.674 38.462 19.93 0.00 0.00 1.75
395 1072 2.928334 CCATTTCTCATACAGCTGGCT 58.072 47.619 19.93 0.90 0.00 4.75
398 1075 4.707030 TTTGCCATTTCTCATACAGCTG 57.293 40.909 13.48 13.48 0.00 4.24
414 1094 8.871686 TCTGACTTTTTCTTAATTCTTTTGCC 57.128 30.769 0.00 0.00 0.00 4.52
601 1281 8.779354 AAGAATGTGACATTTTAGGAGTACTC 57.221 34.615 14.87 14.87 0.00 2.59
607 1287 5.874810 CCTCGAAGAATGTGACATTTTAGGA 59.125 40.000 12.62 6.87 34.09 2.94
608 1288 5.065218 CCCTCGAAGAATGTGACATTTTAGG 59.935 44.000 12.62 10.12 34.09 2.69
609 1289 5.447818 GCCCTCGAAGAATGTGACATTTTAG 60.448 44.000 12.62 8.97 34.09 1.85
610 1290 4.394920 GCCCTCGAAGAATGTGACATTTTA 59.605 41.667 12.62 0.00 34.09 1.52
635 1315 2.242043 CTCTGTTCCATTTTGCAGGGT 58.758 47.619 0.00 0.00 0.00 4.34
2115 2854 3.997064 CTCGCTGAAGGGGAGCACG 62.997 68.421 0.00 0.00 45.57 5.34
2558 3297 1.171308 CTATTGCTGCTGCTTGTGGT 58.829 50.000 17.00 0.00 40.48 4.16
2625 3383 7.342769 TGGATTTGAATTGATCCATTCTGAG 57.657 36.000 17.67 0.00 45.14 3.35
2712 3478 3.067883 CAGAGCAGAGCATAGCAGACTTA 59.932 47.826 0.00 0.00 0.00 2.24
2857 3652 3.885901 CACTCTGCTATGCTACTACTGGA 59.114 47.826 0.00 0.00 0.00 3.86
2858 3653 3.005261 CCACTCTGCTATGCTACTACTGG 59.995 52.174 0.00 0.00 0.00 4.00
2859 3654 3.634448 ACCACTCTGCTATGCTACTACTG 59.366 47.826 0.00 0.00 0.00 2.74
2860 3655 3.634448 CACCACTCTGCTATGCTACTACT 59.366 47.826 0.00 0.00 0.00 2.57
2861 3656 3.243569 CCACCACTCTGCTATGCTACTAC 60.244 52.174 0.00 0.00 0.00 2.73
2862 3657 2.959030 CCACCACTCTGCTATGCTACTA 59.041 50.000 0.00 0.00 0.00 1.82
2877 3675 0.250513 GACCTCCTCATCACCACCAC 59.749 60.000 0.00 0.00 0.00 4.16
2878 3676 0.178906 TGACCTCCTCATCACCACCA 60.179 55.000 0.00 0.00 0.00 4.17
2879 3677 0.984230 TTGACCTCCTCATCACCACC 59.016 55.000 0.00 0.00 0.00 4.61
2952 3754 1.587066 ATGGCAAATCCCCAGCAATT 58.413 45.000 0.00 0.00 35.48 2.32
2989 3792 1.837499 CCCTCCTATGGACGGACCC 60.837 68.421 0.00 0.00 38.00 4.46
3076 3889 4.989168 AGTTCAGTCGACAGAACCAATAAC 59.011 41.667 35.84 19.71 41.48 1.89
3131 3944 7.010738 CAGCAAAATGAAGCAGAAGAAAAGAAA 59.989 33.333 0.00 0.00 0.00 2.52
3132 3945 6.477688 CAGCAAAATGAAGCAGAAGAAAAGAA 59.522 34.615 0.00 0.00 0.00 2.52
3133 3946 5.981315 CAGCAAAATGAAGCAGAAGAAAAGA 59.019 36.000 0.00 0.00 0.00 2.52
3134 3947 5.751990 ACAGCAAAATGAAGCAGAAGAAAAG 59.248 36.000 0.00 0.00 0.00 2.27
3226 4045 6.984474 CGTCTTGCTCAAGGGATTAAAGTATA 59.016 38.462 9.48 0.00 38.88 1.47
3227 4046 5.817816 CGTCTTGCTCAAGGGATTAAAGTAT 59.182 40.000 9.48 0.00 38.88 2.12
3228 4047 5.046878 TCGTCTTGCTCAAGGGATTAAAGTA 60.047 40.000 9.48 0.00 38.88 2.24
3230 4049 4.253685 TCGTCTTGCTCAAGGGATTAAAG 58.746 43.478 9.48 0.00 38.88 1.85
3231 4050 4.280436 TCGTCTTGCTCAAGGGATTAAA 57.720 40.909 9.48 0.00 38.88 1.52
3232 4051 3.973206 TCGTCTTGCTCAAGGGATTAA 57.027 42.857 9.48 0.00 38.88 1.40
3233 4052 3.432186 CCATCGTCTTGCTCAAGGGATTA 60.432 47.826 9.48 0.00 38.88 1.75
3234 4053 2.636830 CATCGTCTTGCTCAAGGGATT 58.363 47.619 9.48 0.00 38.88 3.01
3235 4054 1.134280 CCATCGTCTTGCTCAAGGGAT 60.134 52.381 9.48 9.56 38.88 3.85
3236 4055 0.250234 CCATCGTCTTGCTCAAGGGA 59.750 55.000 9.48 7.92 38.88 4.20
3237 4056 0.036010 ACCATCGTCTTGCTCAAGGG 60.036 55.000 9.48 5.33 38.88 3.95
3238 4057 1.081892 CACCATCGTCTTGCTCAAGG 58.918 55.000 9.48 0.00 38.88 3.61
3239 4058 0.445436 GCACCATCGTCTTGCTCAAG 59.555 55.000 3.32 3.32 39.71 3.02
3240 4059 0.035317 AGCACCATCGTCTTGCTCAA 59.965 50.000 0.00 0.00 43.14 3.02
3241 4060 0.671472 CAGCACCATCGTCTTGCTCA 60.671 55.000 0.00 0.00 44.87 4.26
3242 4061 1.975363 GCAGCACCATCGTCTTGCTC 61.975 60.000 0.00 0.00 44.87 4.26
3244 4063 2.482374 GCAGCACCATCGTCTTGC 59.518 61.111 0.00 0.00 36.45 4.01
3245 4064 2.743752 CGGCAGCACCATCGTCTTG 61.744 63.158 0.00 0.00 39.03 3.02
3246 4065 2.244117 ATCGGCAGCACCATCGTCTT 62.244 55.000 0.00 0.00 39.03 3.01
3247 4066 2.244117 AATCGGCAGCACCATCGTCT 62.244 55.000 0.00 0.00 39.03 4.18
3248 4067 1.815421 AATCGGCAGCACCATCGTC 60.815 57.895 0.00 0.00 39.03 4.20
3249 4068 2.108514 CAATCGGCAGCACCATCGT 61.109 57.895 0.00 0.00 39.03 3.73
3250 4069 2.108514 ACAATCGGCAGCACCATCG 61.109 57.895 0.00 0.00 39.03 3.84
3251 4070 1.026182 TCACAATCGGCAGCACCATC 61.026 55.000 0.00 0.00 39.03 3.51
3252 4071 0.394762 ATCACAATCGGCAGCACCAT 60.395 50.000 0.00 0.00 39.03 3.55
3253 4072 1.002257 ATCACAATCGGCAGCACCA 60.002 52.632 0.00 0.00 39.03 4.17
3254 4073 0.745845 AGATCACAATCGGCAGCACC 60.746 55.000 0.00 0.00 36.97 5.01
3255 4074 1.089920 AAGATCACAATCGGCAGCAC 58.910 50.000 0.00 0.00 36.97 4.40
3256 4075 1.089112 CAAGATCACAATCGGCAGCA 58.911 50.000 0.00 0.00 36.97 4.41
3257 4076 1.372582 TCAAGATCACAATCGGCAGC 58.627 50.000 0.00 0.00 36.97 5.25
3258 4077 2.743664 TGTTCAAGATCACAATCGGCAG 59.256 45.455 0.00 0.00 36.97 4.85
3259 4078 2.777094 TGTTCAAGATCACAATCGGCA 58.223 42.857 0.00 0.00 36.97 5.69
3260 4079 3.436704 TCTTGTTCAAGATCACAATCGGC 59.563 43.478 10.67 0.00 36.97 5.54
3261 4080 5.049474 TGTTCTTGTTCAAGATCACAATCGG 60.049 40.000 17.11 0.00 36.97 4.18
3262 4081 5.989249 TGTTCTTGTTCAAGATCACAATCG 58.011 37.500 17.11 0.00 36.97 3.34
3263 4082 7.074502 GTCTGTTCTTGTTCAAGATCACAATC 58.925 38.462 17.11 11.01 32.50 2.67
3264 4083 6.016777 GGTCTGTTCTTGTTCAAGATCACAAT 60.017 38.462 17.11 0.00 32.50 2.71
3265 4084 5.296780 GGTCTGTTCTTGTTCAAGATCACAA 59.703 40.000 17.11 9.43 0.00 3.33
3266 4085 4.816385 GGTCTGTTCTTGTTCAAGATCACA 59.184 41.667 17.11 16.00 0.00 3.58
3267 4086 4.084328 CGGTCTGTTCTTGTTCAAGATCAC 60.084 45.833 17.11 13.21 0.00 3.06
3268 4087 4.058124 CGGTCTGTTCTTGTTCAAGATCA 58.942 43.478 18.85 18.85 0.00 2.92
3269 4088 3.433615 CCGGTCTGTTCTTGTTCAAGATC 59.566 47.826 14.67 14.02 0.00 2.75
3270 4089 3.403038 CCGGTCTGTTCTTGTTCAAGAT 58.597 45.455 14.67 0.00 0.00 2.40
3271 4090 2.833794 CCGGTCTGTTCTTGTTCAAGA 58.166 47.619 10.67 10.67 0.00 3.02
3272 4091 1.264288 GCCGGTCTGTTCTTGTTCAAG 59.736 52.381 1.90 6.24 0.00 3.02
3273 4092 1.305201 GCCGGTCTGTTCTTGTTCAA 58.695 50.000 1.90 0.00 0.00 2.69
3274 4093 0.179234 TGCCGGTCTGTTCTTGTTCA 59.821 50.000 1.90 0.00 0.00 3.18
3275 4094 1.464997 GATGCCGGTCTGTTCTTGTTC 59.535 52.381 1.90 0.00 0.00 3.18
3276 4095 1.072331 AGATGCCGGTCTGTTCTTGTT 59.928 47.619 1.90 0.00 0.00 2.83
3277 4096 0.687354 AGATGCCGGTCTGTTCTTGT 59.313 50.000 1.90 0.00 0.00 3.16
3278 4097 1.081892 CAGATGCCGGTCTGTTCTTG 58.918 55.000 12.79 0.00 40.54 3.02
3279 4098 3.540211 CAGATGCCGGTCTGTTCTT 57.460 52.632 12.79 0.00 40.54 2.52
3285 4104 0.179000 GATCCAACAGATGCCGGTCT 59.821 55.000 1.90 0.00 34.42 3.85
3286 4105 0.179000 AGATCCAACAGATGCCGGTC 59.821 55.000 1.90 0.00 34.42 4.79
3287 4106 0.620556 AAGATCCAACAGATGCCGGT 59.379 50.000 1.90 0.00 34.42 5.28
3288 4107 1.019673 CAAGATCCAACAGATGCCGG 58.980 55.000 0.00 0.00 34.42 6.13
3289 4108 0.379669 GCAAGATCCAACAGATGCCG 59.620 55.000 0.00 0.00 34.42 5.69
3290 4109 0.379669 CGCAAGATCCAACAGATGCC 59.620 55.000 0.00 0.00 43.02 4.40
3291 4110 1.089920 ACGCAAGATCCAACAGATGC 58.910 50.000 0.00 0.00 43.62 3.91
3292 4111 2.743664 TCAACGCAAGATCCAACAGATG 59.256 45.455 0.00 0.00 43.62 2.90
3293 4112 2.744202 GTCAACGCAAGATCCAACAGAT 59.256 45.455 0.00 0.00 43.62 2.90
3294 4113 2.143122 GTCAACGCAAGATCCAACAGA 58.857 47.619 0.00 0.00 43.62 3.41
3295 4114 1.136252 CGTCAACGCAAGATCCAACAG 60.136 52.381 0.00 0.00 43.62 3.16
3296 4115 0.865111 CGTCAACGCAAGATCCAACA 59.135 50.000 0.00 0.00 43.62 3.33
3297 4116 1.144969 TCGTCAACGCAAGATCCAAC 58.855 50.000 0.00 0.00 43.62 3.77
3298 4117 1.872388 TTCGTCAACGCAAGATCCAA 58.128 45.000 0.00 0.00 43.62 3.53
3299 4118 2.093306 ATTCGTCAACGCAAGATCCA 57.907 45.000 0.00 0.00 43.62 3.41
3300 4119 3.163594 CAAATTCGTCAACGCAAGATCC 58.836 45.455 0.00 0.00 43.62 3.36
3301 4120 2.589841 GCAAATTCGTCAACGCAAGATC 59.410 45.455 0.00 0.00 43.62 2.75
3302 4121 2.031245 TGCAAATTCGTCAACGCAAGAT 60.031 40.909 0.00 0.00 43.62 2.40
3303 4122 1.332065 TGCAAATTCGTCAACGCAAGA 59.668 42.857 0.00 0.00 43.62 3.02
3305 4124 1.332065 TCTGCAAATTCGTCAACGCAA 59.668 42.857 0.00 0.00 39.60 4.85
3306 4125 0.940833 TCTGCAAATTCGTCAACGCA 59.059 45.000 0.00 0.00 39.60 5.24
3307 4126 2.247311 ATCTGCAAATTCGTCAACGC 57.753 45.000 0.00 0.00 39.60 4.84
3308 4127 4.218265 TGAAATCTGCAAATTCGTCAACG 58.782 39.130 0.00 0.00 41.45 4.10
3309 4128 5.215160 ACTGAAATCTGCAAATTCGTCAAC 58.785 37.500 0.00 0.00 0.00 3.18
3310 4129 5.437289 ACTGAAATCTGCAAATTCGTCAA 57.563 34.783 0.00 0.00 0.00 3.18
3311 4130 5.239306 AGAACTGAAATCTGCAAATTCGTCA 59.761 36.000 0.00 0.00 0.00 4.35
3312 4131 5.693814 AGAACTGAAATCTGCAAATTCGTC 58.306 37.500 0.00 0.00 0.00 4.20
3313 4132 5.695851 AGAACTGAAATCTGCAAATTCGT 57.304 34.783 0.00 0.00 0.00 3.85
3314 4133 6.376978 AGAAGAACTGAAATCTGCAAATTCG 58.623 36.000 0.00 0.00 0.00 3.34
3315 4134 8.081025 AGAAGAAGAACTGAAATCTGCAAATTC 58.919 33.333 0.00 0.00 0.00 2.17
3316 4135 7.949434 AGAAGAAGAACTGAAATCTGCAAATT 58.051 30.769 0.00 0.00 0.00 1.82
3317 4136 7.521871 AGAAGAAGAACTGAAATCTGCAAAT 57.478 32.000 0.00 0.00 0.00 2.32
3318 4137 6.949352 AGAAGAAGAACTGAAATCTGCAAA 57.051 33.333 0.00 0.00 0.00 3.68
3319 4138 6.949352 AAGAAGAAGAACTGAAATCTGCAA 57.051 33.333 0.00 0.00 0.00 4.08
3320 4139 6.543465 TGAAAGAAGAAGAACTGAAATCTGCA 59.457 34.615 0.00 0.00 0.00 4.41
3321 4140 6.963796 TGAAAGAAGAAGAACTGAAATCTGC 58.036 36.000 0.00 0.00 0.00 4.26
3322 4141 8.566260 ACATGAAAGAAGAAGAACTGAAATCTG 58.434 33.333 0.00 0.00 0.00 2.90
3323 4142 8.688747 ACATGAAAGAAGAAGAACTGAAATCT 57.311 30.769 0.00 0.00 0.00 2.40
3324 4143 9.178427 CAACATGAAAGAAGAAGAACTGAAATC 57.822 33.333 0.00 0.00 0.00 2.17
3325 4144 8.906867 TCAACATGAAAGAAGAAGAACTGAAAT 58.093 29.630 0.00 0.00 0.00 2.17
3326 4145 8.184192 GTCAACATGAAAGAAGAAGAACTGAAA 58.816 33.333 0.00 0.00 0.00 2.69
3327 4146 7.336679 TGTCAACATGAAAGAAGAAGAACTGAA 59.663 33.333 0.00 0.00 0.00 3.02
3328 4147 6.823182 TGTCAACATGAAAGAAGAAGAACTGA 59.177 34.615 0.00 0.00 0.00 3.41
3329 4148 7.019774 TGTCAACATGAAAGAAGAAGAACTG 57.980 36.000 0.00 0.00 0.00 3.16
3330 4149 7.814264 ATGTCAACATGAAAGAAGAAGAACT 57.186 32.000 0.00 0.00 34.83 3.01
3345 4164 1.097232 CCGTGCATCCATGTCAACAT 58.903 50.000 0.00 0.00 36.96 2.71
3346 4165 0.036022 TCCGTGCATCCATGTCAACA 59.964 50.000 0.00 0.00 0.00 3.33
3347 4166 0.729116 CTCCGTGCATCCATGTCAAC 59.271 55.000 0.00 0.00 0.00 3.18
3348 4167 0.392863 CCTCCGTGCATCCATGTCAA 60.393 55.000 0.00 0.00 0.00 3.18
3349 4168 1.221566 CCTCCGTGCATCCATGTCA 59.778 57.895 0.00 0.00 0.00 3.58
3350 4169 2.182842 GCCTCCGTGCATCCATGTC 61.183 63.158 0.00 0.00 0.00 3.06
3351 4170 2.124570 GCCTCCGTGCATCCATGT 60.125 61.111 0.00 0.00 0.00 3.21
3352 4171 2.124612 TGCCTCCGTGCATCCATG 60.125 61.111 0.00 0.00 36.04 3.66
3358 4177 1.064758 AGGAAAATATGCCTCCGTGCA 60.065 47.619 0.00 0.00 46.94 4.57
3359 4178 1.334869 CAGGAAAATATGCCTCCGTGC 59.665 52.381 0.00 0.00 34.22 5.34
3360 4179 2.874701 CTCAGGAAAATATGCCTCCGTG 59.125 50.000 0.00 0.00 34.22 4.94
3361 4180 2.158755 CCTCAGGAAAATATGCCTCCGT 60.159 50.000 0.00 0.00 34.22 4.69
3362 4181 2.498167 CCTCAGGAAAATATGCCTCCG 58.502 52.381 0.00 0.00 34.22 4.63
3363 4182 2.234143 GCCTCAGGAAAATATGCCTCC 58.766 52.381 0.00 0.00 30.41 4.30
3364 4183 2.234143 GGCCTCAGGAAAATATGCCTC 58.766 52.381 0.00 0.00 34.61 4.70
3365 4184 1.133356 GGGCCTCAGGAAAATATGCCT 60.133 52.381 0.84 0.00 37.55 4.75
3366 4185 1.332195 GGGCCTCAGGAAAATATGCC 58.668 55.000 0.84 0.00 36.68 4.40
3367 4186 1.959282 CTGGGCCTCAGGAAAATATGC 59.041 52.381 4.53 0.00 39.76 3.14
3377 4196 0.769873 AGATAATGCCTGGGCCTCAG 59.230 55.000 4.53 12.83 43.00 3.35
3378 4197 1.133699 CAAGATAATGCCTGGGCCTCA 60.134 52.381 4.53 0.00 41.09 3.86
3379 4198 1.613836 CAAGATAATGCCTGGGCCTC 58.386 55.000 4.53 0.00 41.09 4.70
3380 4199 0.186873 CCAAGATAATGCCTGGGCCT 59.813 55.000 4.53 0.00 41.09 5.19
3381 4200 0.106015 ACCAAGATAATGCCTGGGCC 60.106 55.000 9.28 0.00 41.09 5.80
3382 4201 1.133668 AGACCAAGATAATGCCTGGGC 60.134 52.381 4.43 4.43 42.35 5.36
3383 4202 2.441001 AGAGACCAAGATAATGCCTGGG 59.559 50.000 0.00 0.00 0.00 4.45
3384 4203 3.135348 TCAGAGACCAAGATAATGCCTGG 59.865 47.826 0.00 0.00 0.00 4.45
3385 4204 4.412796 TCAGAGACCAAGATAATGCCTG 57.587 45.455 0.00 0.00 0.00 4.85
3386 4205 5.643421 AATCAGAGACCAAGATAATGCCT 57.357 39.130 0.00 0.00 0.00 4.75
3387 4206 6.995091 AGTAAATCAGAGACCAAGATAATGCC 59.005 38.462 0.00 0.00 0.00 4.40
3388 4207 7.497249 ACAGTAAATCAGAGACCAAGATAATGC 59.503 37.037 0.00 0.00 0.00 3.56
3389 4208 8.954950 ACAGTAAATCAGAGACCAAGATAATG 57.045 34.615 0.00 0.00 0.00 1.90
3390 4209 8.762645 TGACAGTAAATCAGAGACCAAGATAAT 58.237 33.333 0.00 0.00 0.00 1.28
3391 4210 8.134202 TGACAGTAAATCAGAGACCAAGATAA 57.866 34.615 0.00 0.00 0.00 1.75
3392 4211 7.718334 TGACAGTAAATCAGAGACCAAGATA 57.282 36.000 0.00 0.00 0.00 1.98
3393 4212 6.611613 TGACAGTAAATCAGAGACCAAGAT 57.388 37.500 0.00 0.00 0.00 2.40
3394 4213 6.267699 TCTTGACAGTAAATCAGAGACCAAGA 59.732 38.462 0.00 0.00 35.41 3.02
3395 4214 6.459066 TCTTGACAGTAAATCAGAGACCAAG 58.541 40.000 0.00 0.00 0.00 3.61
3396 4215 6.419484 TCTTGACAGTAAATCAGAGACCAA 57.581 37.500 0.00 0.00 0.00 3.67
3397 4216 5.567623 GCTCTTGACAGTAAATCAGAGACCA 60.568 44.000 2.86 0.00 0.00 4.02
3398 4217 4.867608 GCTCTTGACAGTAAATCAGAGACC 59.132 45.833 2.86 0.00 0.00 3.85
3399 4218 5.473931 TGCTCTTGACAGTAAATCAGAGAC 58.526 41.667 2.86 0.00 0.00 3.36
3400 4219 5.728637 TGCTCTTGACAGTAAATCAGAGA 57.271 39.130 2.86 0.00 0.00 3.10
3401 4220 6.981762 AATGCTCTTGACAGTAAATCAGAG 57.018 37.500 0.00 0.00 0.00 3.35
3402 4221 7.164122 AGAAATGCTCTTGACAGTAAATCAGA 58.836 34.615 0.00 0.00 0.00 3.27
3403 4222 7.375106 AGAAATGCTCTTGACAGTAAATCAG 57.625 36.000 0.00 0.00 0.00 2.90
3404 4223 7.369803 GAGAAATGCTCTTGACAGTAAATCA 57.630 36.000 0.00 0.00 40.61 2.57
3418 4237 2.100605 AACACCGGAGAGAAATGCTC 57.899 50.000 9.46 0.00 44.29 4.26
3419 4238 2.039084 AGAAACACCGGAGAGAAATGCT 59.961 45.455 9.46 0.00 0.00 3.79
3420 4239 2.160417 CAGAAACACCGGAGAGAAATGC 59.840 50.000 9.46 0.00 0.00 3.56
3421 4240 3.664107 TCAGAAACACCGGAGAGAAATG 58.336 45.455 9.46 0.00 0.00 2.32
3422 4241 4.065789 GTTCAGAAACACCGGAGAGAAAT 58.934 43.478 9.46 0.00 35.36 2.17
3423 4242 3.118555 TGTTCAGAAACACCGGAGAGAAA 60.119 43.478 9.46 0.00 40.45 2.52
3424 4243 2.432874 TGTTCAGAAACACCGGAGAGAA 59.567 45.455 9.46 0.00 40.45 2.87
3425 4244 2.036387 TGTTCAGAAACACCGGAGAGA 58.964 47.619 9.46 0.00 40.45 3.10
3426 4245 2.526304 TGTTCAGAAACACCGGAGAG 57.474 50.000 9.46 0.00 40.45 3.20
3435 4254 3.569701 TGCCCTTCAGAATGTTCAGAAAC 59.430 43.478 2.87 0.00 37.40 2.78
3436 4255 3.831323 TGCCCTTCAGAATGTTCAGAAA 58.169 40.909 2.87 0.00 37.40 2.52
3437 4256 3.507162 TGCCCTTCAGAATGTTCAGAA 57.493 42.857 1.50 1.50 37.40 3.02
3438 4257 3.507162 TTGCCCTTCAGAATGTTCAGA 57.493 42.857 0.00 0.00 37.40 3.27
3439 4258 4.796038 ATTTGCCCTTCAGAATGTTCAG 57.204 40.909 0.00 0.00 37.40 3.02
3440 4259 5.076182 TGTATTTGCCCTTCAGAATGTTCA 58.924 37.500 0.00 0.00 37.40 3.18
3441 4260 5.415701 TCTGTATTTGCCCTTCAGAATGTTC 59.584 40.000 0.00 0.00 37.40 3.18
3442 4261 5.324409 TCTGTATTTGCCCTTCAGAATGTT 58.676 37.500 0.00 0.00 37.40 2.71
3443 4262 4.922206 TCTGTATTTGCCCTTCAGAATGT 58.078 39.130 0.00 0.00 37.40 2.71
3444 4263 6.293845 GCTATCTGTATTTGCCCTTCAGAATG 60.294 42.308 0.00 0.00 38.38 2.67
3445 4264 5.767168 GCTATCTGTATTTGCCCTTCAGAAT 59.233 40.000 0.00 0.00 38.38 2.40
3446 4265 5.126067 GCTATCTGTATTTGCCCTTCAGAA 58.874 41.667 0.00 0.00 38.38 3.02
3447 4266 4.708177 GCTATCTGTATTTGCCCTTCAGA 58.292 43.478 0.00 0.00 39.05 3.27
3448 4267 3.496130 CGCTATCTGTATTTGCCCTTCAG 59.504 47.826 0.00 0.00 0.00 3.02
3449 4268 3.466836 CGCTATCTGTATTTGCCCTTCA 58.533 45.455 0.00 0.00 0.00 3.02
3450 4269 2.808543 CCGCTATCTGTATTTGCCCTTC 59.191 50.000 0.00 0.00 0.00 3.46
3451 4270 2.487265 CCCGCTATCTGTATTTGCCCTT 60.487 50.000 0.00 0.00 0.00 3.95
3452 4271 1.072331 CCCGCTATCTGTATTTGCCCT 59.928 52.381 0.00 0.00 0.00 5.19
3453 4272 1.523758 CCCGCTATCTGTATTTGCCC 58.476 55.000 0.00 0.00 0.00 5.36
3454 4273 0.875059 GCCCGCTATCTGTATTTGCC 59.125 55.000 0.00 0.00 0.00 4.52
3455 4274 1.801178 GAGCCCGCTATCTGTATTTGC 59.199 52.381 0.00 0.00 0.00 3.68
3456 4275 3.111853 TGAGCCCGCTATCTGTATTTG 57.888 47.619 0.00 0.00 0.00 2.32
3457 4276 3.668447 CATGAGCCCGCTATCTGTATTT 58.332 45.455 0.00 0.00 0.00 1.40
3458 4277 2.613977 GCATGAGCCCGCTATCTGTATT 60.614 50.000 0.00 0.00 33.58 1.89
3459 4278 1.066573 GCATGAGCCCGCTATCTGTAT 60.067 52.381 0.00 0.00 33.58 2.29
3460 4279 0.318441 GCATGAGCCCGCTATCTGTA 59.682 55.000 0.00 0.00 33.58 2.74
3461 4280 1.070445 GCATGAGCCCGCTATCTGT 59.930 57.895 0.00 0.00 33.58 3.41
3462 4281 0.949588 CTGCATGAGCCCGCTATCTG 60.950 60.000 0.00 0.00 41.13 2.90
3463 4282 1.117749 TCTGCATGAGCCCGCTATCT 61.118 55.000 0.00 0.00 41.13 1.98
3464 4283 0.250038 TTCTGCATGAGCCCGCTATC 60.250 55.000 0.00 0.00 41.13 2.08
3465 4284 0.533755 GTTCTGCATGAGCCCGCTAT 60.534 55.000 0.00 0.00 41.13 2.97
3466 4285 1.153369 GTTCTGCATGAGCCCGCTA 60.153 57.895 0.00 0.00 41.13 4.26
3467 4286 2.437359 GTTCTGCATGAGCCCGCT 60.437 61.111 0.00 0.00 41.13 5.52
3468 4287 2.747460 TGTTCTGCATGAGCCCGC 60.747 61.111 0.00 0.00 41.13 6.13
3469 4288 1.078918 TCTGTTCTGCATGAGCCCG 60.079 57.895 0.00 0.00 41.13 6.13
3470 4289 0.251354 TCTCTGTTCTGCATGAGCCC 59.749 55.000 0.00 0.00 41.13 5.19
3471 4290 1.367659 GTCTCTGTTCTGCATGAGCC 58.632 55.000 0.00 0.00 41.13 4.70
3472 4291 0.997932 CGTCTCTGTTCTGCATGAGC 59.002 55.000 0.00 0.00 42.57 4.26
3473 4292 2.643933 TCGTCTCTGTTCTGCATGAG 57.356 50.000 0.00 0.00 0.00 2.90
3474 4293 2.558359 TCTTCGTCTCTGTTCTGCATGA 59.442 45.455 0.00 0.00 0.00 3.07
3475 4294 2.951726 TCTTCGTCTCTGTTCTGCATG 58.048 47.619 0.00 0.00 0.00 4.06
3476 4295 3.194329 TCATCTTCGTCTCTGTTCTGCAT 59.806 43.478 0.00 0.00 0.00 3.96
3477 4296 2.558359 TCATCTTCGTCTCTGTTCTGCA 59.442 45.455 0.00 0.00 0.00 4.41
3478 4297 3.223423 TCATCTTCGTCTCTGTTCTGC 57.777 47.619 0.00 0.00 0.00 4.26
3479 4298 3.551082 GCATCATCTTCGTCTCTGTTCTG 59.449 47.826 0.00 0.00 0.00 3.02
3480 4299 3.733380 CGCATCATCTTCGTCTCTGTTCT 60.733 47.826 0.00 0.00 0.00 3.01
3481 4300 2.533535 CGCATCATCTTCGTCTCTGTTC 59.466 50.000 0.00 0.00 0.00 3.18
3482 4301 2.094494 ACGCATCATCTTCGTCTCTGTT 60.094 45.455 0.00 0.00 0.00 3.16
3483 4302 1.474478 ACGCATCATCTTCGTCTCTGT 59.526 47.619 0.00 0.00 0.00 3.41
3484 4303 1.851053 CACGCATCATCTTCGTCTCTG 59.149 52.381 0.00 0.00 33.84 3.35
3485 4304 1.474478 ACACGCATCATCTTCGTCTCT 59.526 47.619 0.00 0.00 33.84 3.10
3486 4305 1.849219 GACACGCATCATCTTCGTCTC 59.151 52.381 0.00 0.00 33.84 3.36
3487 4306 1.202348 TGACACGCATCATCTTCGTCT 59.798 47.619 0.00 0.00 33.84 4.18
3488 4307 1.585668 CTGACACGCATCATCTTCGTC 59.414 52.381 0.00 0.00 33.84 4.20
3489 4308 1.633561 CTGACACGCATCATCTTCGT 58.366 50.000 0.00 0.00 36.84 3.85
3490 4309 0.299895 GCTGACACGCATCATCTTCG 59.700 55.000 0.00 0.00 0.00 3.79
3491 4310 1.362768 TGCTGACACGCATCATCTTC 58.637 50.000 0.00 0.00 34.44 2.87
3492 4311 3.538379 TGCTGACACGCATCATCTT 57.462 47.368 0.00 0.00 34.44 2.40
3499 4318 1.960763 GGTGTGATGCTGACACGCA 60.961 57.895 17.89 2.70 46.37 5.24
3500 4319 2.863153 GGTGTGATGCTGACACGC 59.137 61.111 0.00 0.00 43.95 5.34
3501 4320 2.382746 CCGGTGTGATGCTGACACG 61.383 63.158 0.00 0.00 43.95 4.49
3502 4321 2.680913 GCCGGTGTGATGCTGACAC 61.681 63.158 1.90 0.00 42.57 3.67
3503 4322 2.358615 GCCGGTGTGATGCTGACA 60.359 61.111 1.90 0.00 0.00 3.58
3504 4323 2.046892 AGCCGGTGTGATGCTGAC 60.047 61.111 1.90 0.00 33.23 3.51
3505 4324 2.230994 GAGAGCCGGTGTGATGCTGA 62.231 60.000 1.90 0.00 34.99 4.26
3506 4325 1.812922 GAGAGCCGGTGTGATGCTG 60.813 63.158 1.90 0.00 34.99 4.41
3507 4326 1.954362 GAGAGAGCCGGTGTGATGCT 61.954 60.000 1.90 0.00 38.24 3.79
3508 4327 1.520342 GAGAGAGCCGGTGTGATGC 60.520 63.158 1.90 0.00 0.00 3.91
3509 4328 0.102120 GAGAGAGAGCCGGTGTGATG 59.898 60.000 1.90 0.00 0.00 3.07
3510 4329 0.033601 AGAGAGAGAGCCGGTGTGAT 60.034 55.000 1.90 0.00 0.00 3.06
3511 4330 0.678366 GAGAGAGAGAGCCGGTGTGA 60.678 60.000 1.90 0.00 0.00 3.58
3512 4331 0.679640 AGAGAGAGAGAGCCGGTGTG 60.680 60.000 1.90 0.00 0.00 3.82
3513 4332 0.393808 GAGAGAGAGAGAGCCGGTGT 60.394 60.000 1.90 0.00 0.00 4.16
3514 4333 1.436195 CGAGAGAGAGAGAGCCGGTG 61.436 65.000 1.90 0.00 0.00 4.94
3515 4334 1.153249 CGAGAGAGAGAGAGCCGGT 60.153 63.158 1.90 0.00 0.00 5.28
3516 4335 1.153249 ACGAGAGAGAGAGAGCCGG 60.153 63.158 0.00 0.00 0.00 6.13
3517 4336 0.742990 ACACGAGAGAGAGAGAGCCG 60.743 60.000 0.00 0.00 0.00 5.52
3518 4337 1.014352 GACACGAGAGAGAGAGAGCC 58.986 60.000 0.00 0.00 0.00 4.70
3519 4338 1.014352 GGACACGAGAGAGAGAGAGC 58.986 60.000 0.00 0.00 0.00 4.09
3520 4339 2.006888 GTGGACACGAGAGAGAGAGAG 58.993 57.143 0.00 0.00 0.00 3.20
3521 4340 1.626321 AGTGGACACGAGAGAGAGAGA 59.374 52.381 0.00 0.00 36.20 3.10
3522 4341 2.107950 AGTGGACACGAGAGAGAGAG 57.892 55.000 0.00 0.00 36.20 3.20
3523 4342 2.428491 GAAGTGGACACGAGAGAGAGA 58.572 52.381 0.00 0.00 36.20 3.10
3524 4343 1.470890 GGAAGTGGACACGAGAGAGAG 59.529 57.143 0.00 0.00 36.20 3.20
3525 4344 1.074084 AGGAAGTGGACACGAGAGAGA 59.926 52.381 0.00 0.00 36.20 3.10
3526 4345 1.201181 CAGGAAGTGGACACGAGAGAG 59.799 57.143 0.00 0.00 36.20 3.20
3527 4346 1.248486 CAGGAAGTGGACACGAGAGA 58.752 55.000 0.00 0.00 36.20 3.10
3528 4347 0.389166 GCAGGAAGTGGACACGAGAG 60.389 60.000 0.00 0.00 36.20 3.20
3529 4348 1.112916 TGCAGGAAGTGGACACGAGA 61.113 55.000 0.00 0.00 36.20 4.04
3530 4349 0.249868 TTGCAGGAAGTGGACACGAG 60.250 55.000 0.00 0.00 36.20 4.18
3531 4350 0.531974 GTTGCAGGAAGTGGACACGA 60.532 55.000 0.00 0.00 36.20 4.35
3532 4351 0.813610 TGTTGCAGGAAGTGGACACG 60.814 55.000 0.00 0.00 36.20 4.49
3533 4352 0.947244 CTGTTGCAGGAAGTGGACAC 59.053 55.000 0.00 0.00 0.00 3.67
3534 4353 0.819259 GCTGTTGCAGGAAGTGGACA 60.819 55.000 0.00 0.00 39.41 4.02
3535 4354 1.845809 CGCTGTTGCAGGAAGTGGAC 61.846 60.000 0.00 0.00 39.64 4.02
3536 4355 1.597854 CGCTGTTGCAGGAAGTGGA 60.598 57.895 0.00 0.00 39.64 4.02
3537 4356 2.949106 CGCTGTTGCAGGAAGTGG 59.051 61.111 0.00 0.00 39.64 4.00
3538 4357 2.253452 GCGCTGTTGCAGGAAGTG 59.747 61.111 0.00 0.00 39.64 3.16
3539 4358 2.203195 TGCGCTGTTGCAGGAAGT 60.203 55.556 9.73 0.00 40.62 3.01
3546 4365 3.886329 GAACCTGCTGCGCTGTTGC 62.886 63.158 16.05 11.56 0.00 4.17
3547 4366 2.253452 GAACCTGCTGCGCTGTTG 59.747 61.111 16.05 8.63 0.00 3.33
3548 4367 3.349006 CGAACCTGCTGCGCTGTT 61.349 61.111 16.05 7.72 0.00 3.16
3553 4372 3.869272 GATGCCGAACCTGCTGCG 61.869 66.667 0.00 0.00 0.00 5.18
3554 4373 3.869272 CGATGCCGAACCTGCTGC 61.869 66.667 0.00 0.00 38.22 5.25
3555 4374 2.125552 TCGATGCCGAACCTGCTG 60.126 61.111 0.00 0.00 42.51 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.